Query psy17223
Match_columns 323
No_of_seqs 271 out of 586
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 16:30:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ugu_A S-arrestin; arrestin fo 100.0 1.9E-55 6.4E-60 428.0 20.7 204 6-311 108-328 (380)
2 1suj_A CONE arrestin; sensory 100.0 2.4E-51 8.3E-56 403.1 21.2 205 6-312 92-310 (392)
3 1g4m_A Beta-arrestin1; sensory 100.0 5.4E-46 1.8E-50 365.9 18.9 205 6-312 95-313 (393)
4 2r51_A Vacuolar protein sortin 99.4 4E-13 1.4E-17 130.0 12.1 115 17-150 103-217 (340)
5 2fau_A Vacuolar protein sortin 99.4 5.4E-12 1.9E-16 122.1 14.0 115 17-150 103-217 (341)
6 3ugu_A S-arrestin; arrestin fo 98.8 2.5E-09 8.4E-14 104.4 5.9 116 182-311 180-300 (380)
7 1suj_A CONE arrestin; sensory 98.6 2.3E-08 7.9E-13 98.3 4.1 58 193-252 172-231 (392)
8 1g4m_A Beta-arrestin1; sensory 98.0 4.6E-06 1.6E-10 82.0 4.7 54 197-252 179-234 (393)
9 2p9r_A Alpha-2-M, alpha-2-macr 88.8 0.58 2E-05 36.3 5.0 31 109-139 3-33 (102)
10 3hrz_B Cobra venom factor; ser 69.0 40 0.0014 30.3 10.8 43 104-148 78-120 (252)
11 3isy_A Bsupi, intracellular pr 68.9 6.3 0.00022 32.4 4.8 41 103-148 2-42 (120)
12 2pn5_A TEP1R, thioester-contai 62.6 13 0.00043 41.1 7.2 51 97-147 89-142 (1325)
13 2hr0_A Complement C3 beta chai 62.6 17 0.00058 36.8 7.6 48 99-146 97-145 (645)
14 2hr0_A Complement C3 beta chai 61.9 68 0.0023 32.3 12.0 85 20-145 163-250 (645)
15 4fxk_A Complement C4 beta chai 53.0 19 0.00064 36.0 6.0 39 100-138 112-150 (656)
16 1yew_A Particulate methane mon 49.9 14 0.00048 35.9 4.3 38 104-143 246-284 (382)
17 3idu_A Uncharacterized protein 47.5 40 0.0014 27.5 6.2 44 229-280 32-75 (127)
18 3vmn_A Dextranase; TIM barrel, 46.8 14 0.00048 38.4 3.9 28 110-137 9-36 (643)
19 3rfr_A PMOB; membrane, oxidore 45.3 14 0.00048 36.3 3.5 32 109-140 283-315 (419)
20 2bm3_A Type 2 cohesin, scaffol 44.7 26 0.00087 30.3 4.6 44 103-146 2-45 (166)
21 2pn5_A TEP1R, thioester-contai 41.9 1.6E+02 0.0054 32.4 11.7 39 108-146 203-242 (1325)
22 3hrz_A Cobra venom factor; ser 40.0 26 0.00089 35.8 4.7 41 99-139 95-135 (627)
23 3idu_A Uncharacterized protein 39.4 50 0.0017 26.9 5.6 40 108-148 19-58 (127)
24 1vjj_A Protein-glutamine gluta 39.2 26 0.00089 36.7 4.6 50 229-280 495-547 (692)
25 2fau_A Vacuolar protein sortin 37.4 43 0.0015 32.0 5.5 37 21-63 245-282 (341)
26 2q3z_A Transglutaminase 2; tra 36.6 26 0.00088 36.7 4.1 51 228-280 485-539 (687)
27 1ex0_A Coagulation factor XIII 36.3 26 0.0009 36.9 4.1 50 229-280 530-582 (731)
28 1g0d_A Protein-glutamine gamma 33.3 23 0.00077 37.2 3.0 51 228-280 484-537 (695)
29 2icn_B Prolactin-inducible pro 33.3 29 0.001 28.2 3.1 42 105-148 5-46 (118)
30 2r51_A Vacuolar protein sortin 32.5 24 0.00082 33.7 2.8 31 118-148 43-76 (340)
31 3cfu_A Uncharacterized lipopro 32.2 47 0.0016 28.0 4.4 53 229-282 45-105 (159)
32 3cu7_A Complement C5; Mg domai 30.8 49 0.0017 37.6 5.5 42 97-138 113-154 (1676)
33 3hrz_A Cobra venom factor; ser 30.7 2.3E+02 0.0079 28.7 10.0 34 108-141 202-237 (627)
34 4acq_A Alpha-2-macroglobulin; 30.3 88 0.003 35.2 7.3 42 98-139 94-135 (1451)
35 4fxk_A Complement C4 beta chai 29.3 1.8E+02 0.0061 28.8 8.8 26 22-63 177-202 (656)
36 3mnm_A ADP-ribosylation factor 29.2 1.2E+02 0.0042 24.3 6.3 43 101-146 12-54 (123)
37 2b39_A C3; thioester, immune d 28.4 83 0.0028 35.7 6.7 41 98-138 117-157 (1661)
38 1yew_A Particulate methane mon 28.2 63 0.0022 31.4 4.9 71 210-282 245-329 (382)
39 4fxk_B Complement C4-A alpha c 25.1 70 0.0024 33.0 5.0 43 104-148 150-192 (767)
40 3prx_B Cobra venom factor; imm 24.9 75 0.0026 36.4 5.6 42 98-139 116-157 (1642)
41 1nnx_A Protein YGIW; structura 24.3 1.3E+02 0.0045 24.0 5.5 45 100-144 54-106 (109)
42 1aoh_A Cellulosome-integrating 21.3 1.2E+02 0.0042 25.3 5.0 39 110-148 6-44 (147)
43 2k6w_A Putative uncharacterize 20.8 1.4E+02 0.0047 24.0 5.0 40 101-140 75-114 (120)
No 1
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=100.00 E-value=1.9e-55 Score=427.95 Aligned_cols=204 Identities=45% Similarity=0.633 Sum_probs=194.1
Q ss_pred ccCcHHHHHHcccCCCeeeeeEeeCCCCCCCcEEeccCCCCCCCceeeEEEEEEEEccCc---cccccceeeEEEeeeee
Q psy17223 6 YKVTFGQERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETA---EDKIHKRNSVRLAIRKI 82 (323)
Q Consensus 6 ~~lt~~Q~~l~~~~G~h~FPFsFqLP~~LP~SF~~~~~~g~~Gk~c~IrY~VKA~I~r~~---~dk~~k~~tv~l~Ir~l 82 (323)
.+||++|++|++|+|.|+|||+|+||.+|||||++|+++++.|++|+|+|+|||++++++ +++++|++++++.||+|
T Consensus 108 ~~lT~lQe~L~kKlG~nayPF~f~LP~~lPsSv~LQp~p~d~Gk~cgV~YeVKafia~~~~~~~dk~~Kr~sV~L~Irkl 187 (380)
T 3ugu_A 108 GATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRKV 187 (380)
T ss_dssp CCCCHHHHHHHHHHCTTEEEEEECCCSSCCCSEEECCCTTCCSCCEEEEEEEEEEEEBCCSSSSSBCCGGGEEEEEEEEE
T ss_pred CCCCHHHHHHHHHhCcCceeEEEeCCCCCCCEEEeccCCccCCCccceEEEEEEEEccCcccccccccccceEEEeeeec
Confidence 579999999999999999999999999999999999999999999999999999999987 78999999999999999
Q ss_pred ecCCCCCCCCCeEEEEEEeEecCCceEEEEEeCccceecCCeEEEEEEEeccCcceeeEEEeecCCCccchhhhhhhccC
Q psy17223 83 MYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVSDSGAEDDQDLKDELADS 162 (323)
Q Consensus 83 ~~~P~~~~~~~~~e~~k~f~f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk~Ikv~L~q~ed~~d~~~~~~~~ 162 (323)
+++|..+.++|..+..|.|||++|+|+|+|+|||++|+|||+|+|++.|+|+|++.|++|++.+.|
T Consensus 188 q~aP~~~~~~P~~e~~K~F~~ssGpl~L~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q-------------- 253 (380)
T 3ugu_A 188 QHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQ-------------- 253 (380)
T ss_dssp EBCCSCCCCCCEEEEEEECTTCCCEEEEEEEESCSEEETTCCEEEEEEEEECSSSCEEEEEEEEEE--------------
T ss_pred ccCCcccCCCCcceEEEEeEecCCCEEEEEEeCCccCcCCCEEEEEEEEEcCCCCeEeEEEEEEEE--------------
Confidence 999988888899999999999999999999999999999999999999999999999999888865
Q ss_pred CCCCCccCCCccccccccccceeeecccccCCCCCCCCCCcchhhhhhccCcchhhccceeeEEeecceEEEEEEEecCC
Q psy17223 163 DIDGMEEDDLPNIKAWGKNKRMYYNTDYVDDDHGGIQSGTGFVWFEWLKKGSKEKSKKKYLFLYYHGESIAVNVHVANNS 242 (323)
Q Consensus 163 di~~~~e~~lp~~~awg~~~~~~y~td~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~k~~~~yyhge~i~v~v~v~N~s 242 (323)
T Consensus 254 -------------------------------------------------------------------------------- 253 (380)
T 3ugu_A 254 -------------------------------------------------------------------------------- 253 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEeeEEeeeEEEeeCCeEeeeeccccCCCccCCCCccc--------------ccceeecccccccccCCcccccccCc
Q psy17223 243 NRTVKKIKVSDICLFSTAQYKCTVAETESDCPIAPVSMFD--------------TEDLAMLRHGFKRMFGHAFSTSLAMP 308 (323)
Q Consensus 243 ~k~vkkikv~dv~l~s~~~y~~~Va~~e~~~~i~p~~t~~--------------~~~~~~~~~~~~~~~~~a~~t~~~~~ 308 (323)
..++|||+++||+|+||.+|+++||+||+||+ |+||||||+|||+|+||||||++++|
T Consensus 254 --------~~~v~l~s~~~y~~~Va~~E~~epV~pgst~~k~~~l~P~l~~n~~krglALdG~lk~edtnLASsT~~~~~ 325 (380)
T 3ugu_A 254 --------VTNVVLYSSDYYIKTVAAEEAQEKVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEG 325 (380)
T ss_dssp --------EEEECSSSCCEEEEEEEEEECSCCBCTTEEEEEEEEECCCGGGCSCCTTSCBSSCTTCTTCCBCCCCCCCTT
T ss_pred --------EEEEEEecCCeEEEEEEEeccCCcCCCCCeEEeeEEEEEecccCCceeeEEecceeccCCCcccceeEecCC
Confidence 04899999999999999999999999999998 99999999999999999999999999
Q ss_pred ccc
Q psy17223 309 RDE 311 (323)
Q Consensus 309 ~~~ 311 (323)
.++
T Consensus 326 ~~k 328 (380)
T 3ugu_A 326 IDK 328 (380)
T ss_dssp CCG
T ss_pred CCC
Confidence 876
No 2
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=100.00 E-value=2.4e-51 Score=403.09 Aligned_cols=205 Identities=47% Similarity=0.706 Sum_probs=192.6
Q ss_pred ccCcHHHHHHcccCCCeeeeeEeeCCCCCCCcEEeccCCCCCCCceeeEEEEEEEEccCccccccceeeEEEeeeeeecC
Q psy17223 6 YKVTFGQERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETAEDKIHKRNSVRLAIRKIMYA 85 (323)
Q Consensus 6 ~~lt~~Q~~l~~~~G~h~FPFsFqLP~~LP~SF~~~~~~g~~Gk~c~IrY~VKA~I~r~~~dk~~k~~tv~l~Ir~l~~~ 85 (323)
.++|++|++|++++|.|+|||+|+||.+|||||++++++++.|++|+|+|+|||+++++++++++|++++.++|++++++
T Consensus 92 ~~~t~lQe~Ll~~~G~h~fPFsFqLP~~lPsSf~lqp~~~~eGk~g~VrY~VKa~i~~~~~dk~~Kr~tv~l~ir~l~~~ 171 (392)
T 1suj_A 92 EPLTPLQEKLMKKLGAHAYPFCFKMGTNLPCSVTLQPGPDDTGKSCGVDFEVKAFCAENLEEKIHKRNSVQLVIRKVQFA 171 (392)
T ss_dssp CCCCHHHHHHHHHHCSSEEEEEECCCSSCCCCEEECCCTTCCSCCEEEEEEEEEEEESCTTSCCCGGGEEEEEEEEEECC
T ss_pred ccccHHHHHhhhcccCeeEeEEeeCCCCCCCeEEeccCCccCCCceeEEEEEEEEEcCChhhccceEEEEEEeeeccccC
Confidence 36999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCCCCCCCeEEEEEEeEecCCceEEEEEeCccceecCCeEEEEEEEeccCcceeeEEEeecCCCccchhhhhhhccCCCC
Q psy17223 86 PSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVSDSGAEDDQDLKDELADSDID 165 (323)
Q Consensus 86 P~~~~~~~~~e~~k~f~f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk~Ikv~L~q~ed~~d~~~~~~~~di~ 165 (323)
|..+.+++..+..++|||++|+|+|+|+|||++|+|||+|.|++.|+|+|++.|++|++.+.|
T Consensus 172 P~~~~~~p~~e~~k~f~~ssGpl~l~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q----------------- 234 (392)
T 1suj_A 172 PANLGVAPKTEITRQFMLSDRPLHLEASLDKEIYYHGEPINVNVKINNTTGKIVKKIKIIVEQ----------------- 234 (392)
T ss_dssp CSSCCCCCCCEEEEEEEETTEEEEEEEEESCSEEETTCCEEEEEEEEECSSSEEEEEEEEEEE-----------------
T ss_pred ccccCCCCeeEEEEEeEecCCCEEEEEEeCCccccCCCEEEEEEEEECCCCCcEeEEEEEEEE-----------------
Confidence 987777788888999999999999999999999999999999999999999999999988865
Q ss_pred CCccCCCccccccccccceeeecccccCCCCCCCCCCcchhhhhhccCcchhhccceeeEEeecceEEEEEEEecCCcce
Q psy17223 166 GMEEDDLPNIKAWGKNKRMYYNTDYVDDDHGGIQSGTGFVWFEWLKKGSKEKSKKKYLFLYYHGESIAVNVHVANNSNRT 245 (323)
Q Consensus 166 ~~~e~~lp~~~awg~~~~~~y~td~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~k~~~~yyhge~i~v~v~v~N~s~k~ 245 (323)
T Consensus 235 -------------------------------------------------------------------------------- 234 (392)
T 1suj_A 235 -------------------------------------------------------------------------------- 234 (392)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeEEeeeEEEeeCCeEeeeeccccCCCccCCCCccc--------------ccceeecccccccccCCcccccccCcccc
Q psy17223 246 VKKIKVSDICLFSTAQYKCTVAETESDCPIAPVSMFD--------------TEDLAMLRHGFKRMFGHAFSTSLAMPRDE 311 (323)
Q Consensus 246 vkkikv~dv~l~s~~~y~~~Va~~e~~~~i~p~~t~~--------------~~~~~~~~~~~~~~~~~a~~t~~~~~~~~ 311 (323)
..++|||++++|+|+||.+|+++||+||+|++ |+||||||+|||+++||||||++++|.++
T Consensus 235 -----~~~v~l~s~~~~k~~Va~~e~~e~V~pgst~~k~~~L~P~l~~n~~k~glaldg~lk~~dTnLassti~~~~~~~ 309 (392)
T 1suj_A 235 -----VTDVVLFSLDKYVKTVCAEETNDTVAANSTLSKTFSVTPMLANNREKRGLALDGKLKHEDTNLASTTVIRPGMDK 309 (392)
T ss_dssp -----EEEECSSSCCEEEEEEEEEECCCCBCTTEEEEEEEEECCCGGGCSCCTTCCBSSCTTBSSCCBCCCCCCCTTSCG
T ss_pred -----EEEEEEecCCcEEEEEEEEecCCCcCCCCEEEEEEEEeccccCCCccceeeecccccCCCccccccccccCCCCc
Confidence 04788999999999999999999999999977 89999999999999999999999998875
Q ss_pred c
Q psy17223 312 L 312 (323)
Q Consensus 312 ~ 312 (323)
-
T Consensus 310 ~ 310 (392)
T 1suj_A 310 E 310 (392)
T ss_dssp G
T ss_pred c
Confidence 3
No 3
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=100.00 E-value=5.4e-46 Score=365.89 Aligned_cols=205 Identities=58% Similarity=0.859 Sum_probs=189.8
Q ss_pred ccCcHHHHHHcccCCCeeeeeEeeCCCCCCCcEEeccCCCCCCCceeeEEEEEEEEccCccccccceeeEEEeeeeeecC
Q psy17223 6 YKVTFGQERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETAEDKIHKRNSVRLAIRKIMYA 85 (323)
Q Consensus 6 ~~lt~~Q~~l~~~~G~h~FPFsFqLP~~LP~SF~~~~~~g~~Gk~c~IrY~VKA~I~r~~~dk~~k~~tv~l~Ir~l~~~ 85 (323)
.+||++|++|++++|.|+|||+|+||.+||+||++++++++.|++|+|+|+|+|+|+++..++++|++++.+.|++++.+
T Consensus 95 ~~lt~lqe~l~~~~G~h~fPF~f~LP~~lPsSfelq~~~~d~G~~g~IrY~Vka~i~~~~~~k~~K~~~v~l~i~~l~~~ 174 (393)
T 1g4m_A 95 KPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYA 174 (393)
T ss_dssp CCCCHHHHHHHHHSCTTEEEEEECCCTTSCCCEEEECCGGGGGGCEEEEEEEEEEEESSTTSCCCGGGEEEEEEEEEECC
T ss_pred CccchhhhhhhccCCceEEEEEeeCCCCCCceEEEccccccCCCcEEEEEEEEEEEcCCcccccceEEEEEEeccccccC
Confidence 47999999999999999999999999999999999999899999999999999999999778999999999999999988
Q ss_pred CCCCCCCCeEEEEEEeEecCCceEEEEEeCccceecCCeEEEEEEEeccCcceeeEEEeecCCCccchhhhhhhccCCCC
Q psy17223 86 PSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVSDSGAEDDQDLKDELADSDID 165 (323)
Q Consensus 86 P~~~~~~~~~e~~k~f~f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk~Ikv~L~q~ed~~d~~~~~~~~di~ 165 (323)
|..+.+++..+..++|||++|+|+|+|+|||++|+|||+|.|++.|+|+|++.|++|+++|.|
T Consensus 175 p~~~~~~~~~e~~k~fc~~sG~l~l~~sldk~~Y~pGE~I~v~v~I~N~S~k~Vk~Ikv~L~Q----------------- 237 (393)
T 1g4m_A 175 PERPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQ----------------- 237 (393)
T ss_dssp CCCCSSCCCCEEEEECBSSSSCEEEEEEESCSEEETTCCEEEEEEEEECSSCCEEEEEEEEEE-----------------
T ss_pred chhhcCCCceEEEEEEEEcCCCEEEEEEECCceEcCCCEEEEEEEEEcCCCCEEeEEEEEEEE-----------------
Confidence 876656677788899999999999999999999999999999999999999999999998865
Q ss_pred CCccCCCccccccccccceeeecccccCCCCCCCCCCcchhhhhhccCcchhhccceeeEEeecceEEEEEEEecCCcce
Q psy17223 166 GMEEDDLPNIKAWGKNKRMYYNTDYVDDDHGGIQSGTGFVWFEWLKKGSKEKSKKKYLFLYYHGESIAVNVHVANNSNRT 245 (323)
Q Consensus 166 ~~~e~~lp~~~awg~~~~~~y~td~~~~~~~~~~~~~~~~~~e~~~~~~~~~s~~k~~~~yyhge~i~v~v~v~N~s~k~ 245 (323)
T Consensus 238 -------------------------------------------------------------------------------- 237 (393)
T 1g4m_A 238 -------------------------------------------------------------------------------- 237 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeEEeeeEEEeeCCeEeeeeccccCCCccCCCCccc--------------ccceeecccccccccCCcccccccCcccc
Q psy17223 246 VKKIKVSDICLFSTAQYKCTVAETESDCPIAPVSMFD--------------TEDLAMLRHGFKRMFGHAFSTSLAMPRDE 311 (323)
Q Consensus 246 vkkikv~dv~l~s~~~y~~~Va~~e~~~~i~p~~t~~--------------~~~~~~~~~~~~~~~~~a~~t~~~~~~~~ 311 (323)
..|+|+|++++|+++||.+|++++|.||++++ ++||||||+||++++|||+||||.++.|+
T Consensus 238 -----~~~~~~~s~~~~k~~Va~~e~~~~V~~gs~~~~~~~L~P~l~p~~~~~~~aldg~lk~~dt~l~ss~ii~~~~~~ 312 (393)
T 1g4m_A 238 -----YADICLFNTAQYKCPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANR 312 (393)
T ss_dssp -----EEEECSSBCEEEEEEEEEEEECCCBCTTEEEEEEEEECCCGGGTTTCSSEEESSCTTSTTCCBCCCCCCCTTCCS
T ss_pred -----EEEEEEecCCceEEEEEEEecCCcCCCCCEEeeEEEEcCCCCCcccccceeeccccccCCcccccceeecCCCCc
Confidence 03678888999999999999999999999977 89999999999999999999999988765
Q ss_pred c
Q psy17223 312 L 312 (323)
Q Consensus 312 ~ 312 (323)
-
T Consensus 313 ~ 313 (393)
T 1g4m_A 313 E 313 (393)
T ss_dssp G
T ss_pred c
Confidence 3
No 4
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=99.44 E-value=4e-13 Score=130.00 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=84.5
Q ss_pred ccCCCeeeeeEeeCCCCCCCcEEeccCCCCCCCceeeEEEEEEEEccCccccccceeeEEEeeeeeecCCCCCCCCCeEE
Q psy17223 17 KKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETAEDKIHKRNSVRLAIRKIMYAPSKQGEQPSVE 96 (323)
Q Consensus 17 ~~~G~h~FPFsFqLP~~LP~SF~~~~~~g~~Gk~c~IrY~VKA~I~r~~~dk~~k~~tv~l~Ir~l~~~P~~~~~~~~~e 96 (323)
.++|.| |||+|+||..+|+||+ |.+| +|||.|+|.|+|++ + ....+..|.|..++..|... .+-..+
T Consensus 103 L~~G~~-fpF~F~lp~~l~eSy~-----G~~g---~IrY~vkv~i~Rp~--~-di~~~~eF~V~~~~~~p~~~-~pIk~E 169 (340)
T 2r51_A 103 ITQSQA-FDFEFTHVEKPYESYT-----GQNV---KLRYFLRATISRRL--N-DVVKEMDIVVHTLSTYPELN-SSIKME 169 (340)
T ss_dssp ECSCEE-EEEEECSBCCCSCCEE-----CSSE---EEEEEEEEEECCSS--C-CEEEEEEEEEECCCCCCCCC-CCEEEE
T ss_pred cCCCcE-EeeEeCCCCCCCcCeE-----eeeE---EEEEEEEEEEEecC--C-CceEEEEEEEEeCCCCCccC-CCEecc
Confidence 579999 9999999999999997 4455 99999999999875 3 33344556665443323221 111122
Q ss_pred EEEEeEecCCceEEEEEeCccceecCCeEEEEEEEeccCcceeeEEEeecCCCc
Q psy17223 97 VSKEFMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVSDSGAE 150 (323)
Q Consensus 97 ~~k~f~f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk~Ikv~L~q~e 150 (323)
. ++.. -+++++.+||.+|.+||+|..++.+. .|+..|+.|+++|.+-|
T Consensus 170 v----gi~~-cl~Ie~~~~ks~y~lgd~I~G~I~f~-~s~i~Ik~iel~LiR~E 217 (340)
T 2r51_A 170 V----GIED-CLHIEFEYNKSKYHLKDVIVGKIYFL-LVRIKIKHMEIDIIKRE 217 (340)
T ss_dssp E----EETT-TEEEEEEESCSEEETTCEEEEEEEEE-EECSCEEEEEEEEEEEE
T ss_pred c----cCCc-eEEEEEEECcccccCCCeEEEEEEEE-EeeceeEEEEEEEEEEE
Confidence 1 2211 18999999999999999999888888 67799999999998743
No 5
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}
Probab=99.36 E-value=5.4e-12 Score=122.11 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=85.6
Q ss_pred ccCCCeeeeeEeeCCCCCCCcEEeccCCCCCCCceeeEEEEEEEEccCccccccceeeEEEeeeeeecCCCCCCCCCeEE
Q psy17223 17 KKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETAEDKIHKRNSVRLAIRKIMYAPSKQGEQPSVE 96 (323)
Q Consensus 17 ~~~G~h~FPFsFqLP~~LP~SF~~~~~~g~~Gk~c~IrY~VKA~I~r~~~dk~~k~~tv~l~Ir~l~~~P~~~~~~~~~e 96 (323)
.++| |.|||+|++|+.+|+||+ |.+| +|||.|+|.|+|++. ....+..|.|..++..|....+ -..+
T Consensus 103 L~~g-~~fpF~F~~~~~~~eSy~-----G~~~---~IrY~vrv~i~R~~~---di~~~~eF~V~~~~~~p~~~~p-i~~e 169 (341)
T 2fau_A 103 LTQS-RSYDFEFMQVEKPYESYI-----GANV---RLRYFLKVTIVRRLT---DLVKEYDLIVHQLATYPDVNNS-IKME 169 (341)
T ss_dssp ECSC-EEEEEEECSCCCCSCCEE-----CSSE---EEEEEEEEEECCSSS---CEEEEEEEEECCCBCCCCCCCC-EEEE
T ss_pred cCCC-cEEeeEeCCCCCCCcceE-----eeEE---EEEEEEEEEEEecCc---ceeEEEEEEEEeCCCCCCCCCC-eEEE
Confidence 5788 999999999988999997 4455 999999999999752 3333455666544332322111 0111
Q ss_pred EEEEeEecCCceEEEEEeCccceecCCeEEEEEEEeccCcceeeEEEeecCCCc
Q psy17223 97 VSKEFMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVSDSGAE 150 (323)
Q Consensus 97 ~~k~f~f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk~Ikv~L~q~e 150 (323)
+ -..+++++++.++|..|.+||+|..++.+. .|+..|+.|+++|.+.|
T Consensus 170 v-----gied~L~ieF~~~ks~y~l~d~I~G~I~f~-~s~i~Ik~iel~LiR~E 217 (341)
T 2fau_A 170 V-----GIEDXLHIEFEYNKSKYHLKDVIVGKIYFL-LVRIKIQHMELQLIKKE 217 (341)
T ss_dssp E-----EETTTEEEEEEESCSEEETTCEEEEEEEEE-EECSCEEEEEEEEEEEE
T ss_pred E-----eccccEEEEEEEccccccCCCeEEEEEEEE-EeccceEEEEEEEEEEE
Confidence 1 115778999999999999999999998888 68889999999998744
No 6
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=98.83 E-value=2.5e-09 Score=104.44 Aligned_cols=116 Identities=26% Similarity=0.259 Sum_probs=81.3
Q ss_pred cceeeecccccCCCCCCCCCCcchhhhhhccCcc--hhhccceeeEEeecceEEEEEEEecCCcceEeeEEeeeEEEeeC
Q psy17223 182 KRMYYNTDYVDDDHGGIQSGTGFVWFEWLKKGSK--EKSKKKYLFLYYHGESIAVNVHVANNSNRTVKKIKVSDICLFST 259 (323)
Q Consensus 182 ~~~~y~td~~~~~~~~~~~~~~~~~~e~~~~~~~--~~s~~k~~~~yyhge~i~v~v~v~N~s~k~vkkikv~dv~l~s~ 259 (323)
.+|-.+.-..++...+.++++|..+.|+|+.|.+ +.+|.| ..|||||+|.|+|.|+|+|+|+||+||++ -
T Consensus 180 V~L~Irklq~aP~~~~~~P~~e~~K~F~~ssGpl~L~vsLdK--~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~------L 251 (380)
T 3ugu_A 180 VRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSK--EIYYHGEPIPVTVAVTNSTEKTVKKIKVL------V 251 (380)
T ss_dssp EEEEEEEEEBCCSCCCCCCEEEEEEECTTCCCEEEEEEEESC--SEEETTCCEEEEEEEEECSSSCEEEEEEE------E
T ss_pred EEEeeeecccCCcccCCCCcceEEEEeEecCCCEEEEEEeCC--ccCcCCCEEEEEEEEEcCCCCeEeEEEEE------E
Confidence 4555555333455678899999999999999988 788999 99999999999999999999999999998 3
Q ss_pred CeEeeeeccc--cCCCccCCCCccc-ccceeecccccccccCCcccccccCcccc
Q psy17223 260 AQYKCTVAET--ESDCPIAPVSMFD-TEDLAMLRHGFKRMFGHAFSTSLAMPRDE 311 (323)
Q Consensus 260 ~~y~~~Va~~--e~~~~i~p~~t~~-~~~~~~~~~~~~~~~~~a~~t~~~~~~~~ 311 (323)
-|+...++.- ...++|+ +.. ...|++-.. ..+.|-|-| +++..+|+
T Consensus 252 ~Q~~~v~l~s~~~y~~~Va---~~E~~epV~pgst-~~k~~~l~P--~l~~n~~k 300 (380)
T 3ugu_A 252 EQVTNVVLYSSDYYIKTVA---AEEAQEKVPPNSS-LTKTLTLVP--LLANNRER 300 (380)
T ss_dssp EEEEEECSSSCCEEEEEEE---EEECSCCBCTTEE-EEEEEEECC--CGGGCSCC
T ss_pred EEEEEEEEecCCeEEEEEE---EeccCCcCCCCCe-EEeeEEEEE--ecccCCce
Confidence 4555545431 1223432 111 235665555 456666666 55665554
No 7
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=98.58 E-value=2.3e-08 Score=98.33 Aligned_cols=58 Identities=36% Similarity=0.475 Sum_probs=52.0
Q ss_pred CCCCCCCCCCcchhhhhhccCcc--hhhccceeeEEeecceEEEEEEEecCCcceEeeEEee
Q psy17223 193 DDHGGIQSGTGFVWFEWLKKGSK--EKSKKKYLFLYYHGESIAVNVHVANNSNRTVKKIKVS 252 (323)
Q Consensus 193 ~~~~~~~~~~~~~~~e~~~~~~~--~~s~~k~~~~yyhge~i~v~v~v~N~s~k~vkkikv~ 252 (323)
+...+.+++++..+.|.++.|.+ +.++.| +.|||||+|.|+|.|+|+|+|+||+||+.
T Consensus 172 P~~~~~~p~~e~~k~f~~ssGpl~l~vsLdK--~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~ 231 (392)
T 1suj_A 172 PANLGVAPKTEITRQFMLSDRPLHLEASLDK--EIYYHGEPINVNVKINNTTGKIVKKIKII 231 (392)
T ss_dssp CSSCCCCCCCEEEEEEEETTEEEEEEEEESC--SEEETTCCEEEEEEEEECSSSEEEEEEEE
T ss_pred ccccCCCCeeEEEEEeEecCCCEEEEEEeCC--ccccCCCEEEEEEEEECCCCCcEeEEEEE
Confidence 33455778888899899999987 799999 99999999999999999999999999997
No 8
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=97.97 E-value=4.6e-06 Score=81.98 Aligned_cols=54 Identities=48% Similarity=0.615 Sum_probs=48.4
Q ss_pred CCCCCCcchhhhhhccCcc--hhhccceeeEEeecceEEEEEEEecCCcceEeeEEee
Q psy17223 197 GIQSGTGFVWFEWLKKGSK--EKSKKKYLFLYYHGESIAVNVHVANNSNRTVKKIKVS 252 (323)
Q Consensus 197 ~~~~~~~~~~~e~~~~~~~--~~s~~k~~~~yyhge~i~v~v~v~N~s~k~vkkikv~ 252 (323)
+.++..+..+.+.++.|.. +.++.| ..|+|||+|.|+|.|+|+|+|+||+|++.
T Consensus 179 ~~~~~~e~~k~fc~~sG~l~l~~sldk--~~Y~pGE~I~v~v~I~N~S~k~Vk~Ikv~ 234 (393)
T 1g4m_A 179 GPQPTAETTRQFLMSDKPLHLEASLDK--EIYYHGEPISVNVHVTNNTNKTVKKIKIS 234 (393)
T ss_dssp SSCCCCEEEEECBSSSSCEEEEEEESC--SEEETTCCEEEEEEEEECSSCCEEEEEEE
T ss_pred cCCCceEEEEEEEEcCCCEEEEEEECC--ceEcCCCEEEEEEEEEcCCCCEEeEEEEE
Confidence 4566778888888999977 688999 99999999999999999999999999997
No 9
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=88.83 E-value=0.58 Score=36.28 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=26.0
Q ss_pred EEEEEeCccceecCCeEEEEEEEeccCccee
Q psy17223 109 HLEASLDKELYYHGESIAVNVHVANNSNRTV 139 (323)
Q Consensus 109 ~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~V 139 (323)
.+-+..||..|.|||+|.+.+-+.|...+.+
T Consensus 3 ~~fi~tDr~iYrPGetV~~~~~~~~~~~~p~ 33 (102)
T 2p9r_A 3 LVFVQTDKSIYKPGQTVKFRVVSMDENFHPL 33 (102)
T ss_dssp EEEEEESCSEECTTCEEEEEEEEECGGGCBC
T ss_pred eEEEECCCcccCCCCEEEEEEEEECCCCcCC
Confidence 3567899999999999999999888766644
No 10
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=69.02 E-value=40 Score=30.32 Aligned_cols=43 Identities=9% Similarity=0.150 Sum_probs=35.6
Q ss_pred cCCceEEEEEeCccceecCCeEEEEEEEeccCcceeeEEEeecCC
Q psy17223 104 SPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVSDSG 148 (323)
Q Consensus 104 ~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk~Ikv~L~q 148 (323)
...++.|...||+.+ ..||.+.|.+.|-|+..+.++ ++|.+..
T Consensus 78 v~kpffv~~~LP~sv-~rGE~~~l~~~V~Ny~~~~~~-v~V~l~~ 120 (252)
T 3hrz_B 78 VMKVFFIDLQMPYSV-VKNEQVEIRAILHNYVNEDIY-VRVELLY 120 (252)
T ss_dssp BCCSEEEEECCCSCE-ETTCCEEEEEEEEECSSSCEE-EEEEECC
T ss_pred EECCEEEEcCCCcEE-eeCCEEEEEEEEEcccCceEE-EEEEEEc
Confidence 356788889999864 589999999999999998865 7777764
No 11
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=68.86 E-value=6.3 Score=32.35 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=32.2
Q ss_pred ecCCceEEEEEeCccceecCCeEEEEEEEeccCcceeeEEEeecCC
Q psy17223 103 MSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVSDSG 148 (323)
Q Consensus 103 f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk~Ikv~L~q 148 (323)
+..|.|.+++.-+. +|+.+.+.+.|.|.++..+. +.+.-.+
T Consensus 2 ~~~~~l~~~v~~~~----~g~~v~~~ltv~N~s~~~v~-l~f~Sgq 42 (120)
T 3isy_A 2 MENQEVVLSIDAIQ----EPEQIKFNMSLKNQSERAIE-FQFSTGQ 42 (120)
T ss_dssp --CCSEEEEEEEEE----CSSCEEEEEEEEECSSSCEE-EEESSSC
T ss_pred ccccEEEEEEeecc----CCCeEEEEEEEEcCCCCcEE-EEeCCCC
Confidence 45788999998887 89999999999999998876 4444444
No 12
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=62.58 E-value=13 Score=41.14 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=39.6
Q ss_pred EEEEeEecCCceEEEEEeCccceecCCeEEEEEEEeccCcceee---EEEeecC
Q psy17223 97 VSKEFMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVK---KIKVSDS 147 (323)
Q Consensus 97 ~~k~f~f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk---~Ikv~L~ 147 (323)
.++.+.+..-...+-+..||..|.|||+|.+.+-+-|..-+.+. .+.+.+.
T Consensus 89 ~~~~v~~~~~~~~~fi~TDr~iYrPGqtV~~r~~~~~~~~~p~~~~~~v~v~l~ 142 (1325)
T 2pn5_A 89 KEAELVYLSKSISGLIQVDKPVFKPGDTVNFRVIVLDTELKPPARVKSVYVTIR 142 (1325)
T ss_dssp EEEEEEECSCSEEEEEEESCSEECTTCEEEEEEEEEETTSSCCSSCCEEEEEEE
T ss_pred EEEEEEEEcccccEEEecCCCccCCCCEEEEEEEEecCCccccccCccEEEEEE
Confidence 34556677777788899999999999999999988887767654 3556554
No 13
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=62.57 E-value=17 Score=36.79 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=33.2
Q ss_pred EEeEecCCceEEEEEeCccceecCCeEEEEEEEeccCccee-eEEEeec
Q psy17223 99 KEFMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTV-KKIKVSD 146 (323)
Q Consensus 99 k~f~f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~V-k~Ikv~L 146 (323)
+...+..-...+=+..||.+|.|||+|.+.+-+.|..-+.+ ..+.+.+
T Consensus 97 ~~v~~~~~~~~~fi~TDR~iYrPGqtV~~r~i~~d~~~~p~~~~v~v~l 145 (645)
T 2hr0_A 97 KVVLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHKLLPVGRTVMVNI 145 (645)
T ss_dssp EEEEEECCCCEEEEEESCSBCCTTSEEEEEEEEECTTSCBCCCEEEEEE
T ss_pred EEEEEecCCccEEEEcCCccCCCCCEEEEEEEEECCCCcccCceEEEEE
Confidence 44445544555778999999999999999988877665543 2344444
No 14
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=61.90 E-value=68 Score=32.29 Aligned_cols=85 Identities=14% Similarity=0.334 Sum_probs=54.4
Q ss_pred CCeeeeeEeeCCCCCCCcEEeccCCCCCCCceeeEEEEEEEEccCccccccceeeEEEeeeeeecCCCCCCCCCeEEEEE
Q psy17223 20 GPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETAEDKIHKRNSVRLAIRKIMYAPSKQGEQPSVEVSK 99 (323)
Q Consensus 20 G~h~FPFsFqLP~~LP~SF~~~~~~g~~Gk~c~IrY~VKA~I~r~~~dk~~k~~tv~l~Ir~l~~~P~~~~~~~~~e~~k 99 (323)
..-.|.++|+||.+.|. | .|+|+|..... .....+..|.|.+ +.| |
T Consensus 163 ~~G~~~~~f~Lp~~~~~-----------G-----~w~I~v~~~~~----~~~~~~~~F~Vee--Yvl------P------ 208 (645)
T 2hr0_A 163 QLGVLPLSWDIPELVNM-----------G-----QWKIRAYYENS----PQQVFSTEFEVKE--YVL------P------ 208 (645)
T ss_dssp TTTEEEEEEECCSSCCC-----------S-----EEEEEEEETTC----TTSEEEEEEECCC--SCC------C------
T ss_pred cCCeEEEEEECCCcccc-----------c-----cEEEEEEECCC----CCceEEEEEEEee--ccC------C------
Confidence 34567788899887443 4 28998887421 1112333444433 111 1
Q ss_pred EeEecCCceEEEEEeCccceecC--CeEEEEEEEeccCcceeeE-EEee
Q psy17223 100 EFMMSPNKLHLEASLDKELYYHG--ESIAVNVHVANNSNRTVKK-IKVS 145 (323)
Q Consensus 100 ~f~f~sG~I~L~a~LdK~~Y~PG--E~I~V~v~IdN~Ssk~Vk~-Ikv~ 145 (323)
...+++..++..|..| +.+.++++......+.|.. ..++
T Consensus 209 -------~feV~i~~~~~~~~~~~~~~~~v~v~a~Y~~G~Pv~G~a~v~ 250 (645)
T 2hr0_A 209 -------SFEVIVEPTEKFYYIYNEKGLEVTITARFLYGKKVEGTAFVI 250 (645)
T ss_dssp -------CCEEEEEESSSSEETTCTTCEEEEEEEECTTSCBCCEEEEEE
T ss_pred -------eEEEEEEcCceeEecCCCcEEEEEEEEEEcCCCeeeeEEEEE
Confidence 3456677888888888 8899998888888888875 4444
No 15
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=52.99 E-value=19 Score=36.01 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=27.3
Q ss_pred EeEecCCceEEEEEeCccceecCCeEEEEEEEeccCcce
Q psy17223 100 EFMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRT 138 (323)
Q Consensus 100 ~f~f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~ 138 (323)
.+.+..-.-.+=++.||.+|.|||+|.+.+-+-|..-+.
T Consensus 112 ~v~~~~~~~~vFIqTDr~iYrPGqtV~~r~i~~d~~~~p 150 (656)
T 4fxk_A 112 NLLFSSRRGHLFLQTDQPIYNPGQRVRYRVFALDQKMRP 150 (656)
T ss_dssp EEEECCCCSEEEEEESCSEECTTCEEEEEEEEECSSSSB
T ss_pred EEEEeccCccEEEECCCCCcCCCCEEEEEEEEECCccCc
Confidence 344442222344668999999999999998887776554
No 16
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=49.90 E-value=14 Score=35.89 Aligned_cols=38 Identities=11% Similarity=0.336 Sum_probs=28.7
Q ss_pred cCCceEEEEEeCccce-ecCCeEEEEEEEeccCcceeeEEE
Q psy17223 104 SPNKLHLEASLDKELY-YHGESIAVNVHVANNSNRTVKKIK 143 (323)
Q Consensus 104 ~sG~I~L~a~LdK~~Y-~PGE~I~V~v~IdN~Ssk~Vk~Ik 143 (323)
..++|+ +.+.+-.| .||-++.++++|+|+++..|+==+
T Consensus 246 ~~~~V~--~~v~~A~Y~vpgR~l~~~~~VtN~g~~pvrlge 284 (382)
T 1yew_A 246 PAPTVS--VKVEDATYRVPGRAMRMKLTITNHGNSPIRLGE 284 (382)
T ss_dssp CCCSEE--EEEEEEEEESSCSEEEEEEEEEECSSSCEEEEE
T ss_pred CCCceE--EEeeccEEecCCcEEEEEEEEEcCCCCceEeee
Confidence 345544 44556666 899999999999999999887433
No 17
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=47.46 E-value=40 Score=27.51 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=32.4
Q ss_pred cceEEEEEEEecCCcceEeeEEeeeEEEeeCCeEeeeeccccCCCccCCCCc
Q psy17223 229 GESIAVNVHVANNSNRTVKKIKVSDICLFSTAQYKCTVAETESDCPIAPVSM 280 (323)
Q Consensus 229 ge~i~v~v~v~N~s~k~vkkikv~dv~l~s~~~y~~~Va~~e~~~~i~p~~t 280 (323)
|+++.++|.|.|.-.+.+...+| .||.|+.... .. ...++||++
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V---~lyvng~~v~---t~--~v~La~G~s 75 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKV---RVYINGTLYK---NW--TVSLGPKEE 75 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEE---EEEETTEEEE---EE--EEEECTTCE
T ss_pred CCEEEEEEEEEECCCCccCCcEE---EEEECCEEEe---eE--EeccCCCCe
Confidence 99999999999999999887654 5787887432 11 114777765
No 18
>3vmn_A Dextranase; TIM barrel, immunoglobrin fold, greek-KEY-motif, glycoside H family 66, hydrolase; 1.60A {Streptococcus mutans} PDB: 3vmo_A* 3vmp_A*
Probab=46.79 E-value=14 Score=38.40 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=24.8
Q ss_pred EEEEeCccceecCCeEEEEEEEeccCcc
Q psy17223 110 LEASLDKELYYHGESIAVNVHVANNSNR 137 (323)
Q Consensus 110 L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk 137 (323)
..+..||..|.|||.|.+++.+.|.+.+
T Consensus 9 ~~v~tDKA~Y~PGe~V~l~~~l~n~t~~ 36 (643)
T 3vmn_A 9 INLTTDKAVYQAGEAVHLNLTLNNTTSL 36 (643)
T ss_dssp CCCEESCSSBCTTSCEEEECEEECCSSS
T ss_pred eeeeccccccCCCCeEEEEEEEecccCc
Confidence 3577999999999999999999997755
No 19
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=45.31 E-value=14 Score=36.27 Aligned_cols=32 Identities=25% Similarity=0.565 Sum_probs=27.7
Q ss_pred EEEEEeCccce-ecCCeEEEEEEEeccCcceee
Q psy17223 109 HLEASLDKELY-YHGESIAVNVHVANNSNRTVK 140 (323)
Q Consensus 109 ~L~a~LdK~~Y-~PGE~I~V~v~IdN~Ssk~Vk 140 (323)
.+++.+.+-.| .||-++.++++|+|+++..|+
T Consensus 283 ~V~~~v~~A~Y~vpgR~l~~~~~VtN~g~~pvr 315 (419)
T 3rfr_A 283 QVTTELNGGVYKVPGRELTINVKVKNGTSQPVR 315 (419)
T ss_dssp CCEEEEEEEEEESSSSEEEEEEEEECCSSSCBE
T ss_pred ceEEEEeceEEecCCcEEEEEEEEecCCCCceE
Confidence 46667777777 899999999999999999885
No 20
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=44.72 E-value=26 Score=30.33 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=34.2
Q ss_pred ecCCceEEEEEeCccceecCCeEEEEEEEeccCcceeeEEEeec
Q psy17223 103 MSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVSD 146 (323)
Q Consensus 103 f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk~Ikv~L 146 (323)
+.+....+++.|||+.-.-||.|..++.|+|-++-.=-.|-++-
T Consensus 2 ~a~~~~~I~~~lDKT~~~VGdII~Atv~vnnI~nfAGYQvNIKY 45 (166)
T 2bm3_A 2 ASDKASSIELKFDRNKGEVGDILIGTVRINNIKNFAGFQVNIVY 45 (166)
T ss_dssp ---CCCEEEEEESCSCCCTTCEEEEEEEEESCTTEEEEEEEEEC
T ss_pred CcCCCCeEEEEecCcceeeCCEEEEEEEEcccccccceEEEEEE
Confidence 56677889999999999999999999999998876554444444
No 21
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=41.87 E-value=1.6e+02 Score=32.41 Aligned_cols=39 Identities=8% Similarity=0.084 Sum_probs=25.9
Q ss_pred eEEEEEeCccceecCCeEEEEEEEeccCcceeeE-EEeec
Q psy17223 108 LHLEASLDKELYYHGESIAVNVHVANNSNRTVKK-IKVSD 146 (323)
Q Consensus 108 I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk~-Ikv~L 146 (323)
..+++..++..|..|+.+.++++..-...++|.+ .+|.+
T Consensus 203 feV~i~~~~~~~~~~~~~~v~v~a~Y~~G~Pv~G~~~v~v 242 (1325)
T 2pn5_A 203 FDVQVMPSVIPLEEHQAVNLTIEANYHFGKPVQGVAKVEL 242 (1325)
T ss_dssp EEEEEEESSCCBGGGCEEEEEEEEEESSSCBCEEEEEEEE
T ss_pred EEEEEecCceEEecCCeEEEEEEEEEcCCCeeeeEEEEEE
Confidence 3455566777777777777777777777777765 44443
No 22
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*
Probab=40.02 E-value=26 Score=35.76 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=28.0
Q ss_pred EEeEecCCceEEEEEeCccceecCCeEEEEEEEeccCccee
Q psy17223 99 KEFMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTV 139 (323)
Q Consensus 99 k~f~f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~V 139 (323)
+...++.-.-.+=+..||.+|.|||+|.+.+-..|...+.+
T Consensus 95 ~~v~v~~~~~~~fi~TDr~iYrPGqtV~~r~i~~d~~~~p~ 135 (627)
T 3hrz_A 95 KVVLLSYQSSFLFIQTDKGIYTPGSPVLYRVFSMDHNTSKM 135 (627)
T ss_dssp EEEEEECCCSCEEEEESCSEECTTCEECEEEEESCC-----
T ss_pred EEEEEEcCCCcEEEECCCCccCCCCEEEEEEEEECCCCccc
Confidence 44455544455567899999999999999998888765554
No 23
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=39.42 E-value=50 Score=26.91 Aligned_cols=40 Identities=23% Similarity=0.060 Sum_probs=31.7
Q ss_pred eEEEEEeCccceecCCeEEEEEEEeccCcceeeEEEeecCC
Q psy17223 108 LHLEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVSDSG 148 (323)
Q Consensus 108 I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk~Ikv~L~q 148 (323)
+.++++-|. ...+|+.+.+++.|.|.-..++...+|.|+-
T Consensus 19 L~V~is~P~-~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyv 58 (127)
T 3idu_A 19 LTVEIKGPD-VVGVNKLAEYEVHVKNLGGIGVPSTKVRVYI 58 (127)
T ss_dssp EEEEEESCS-EECTTCCEEEEEEEEECSSSCEEEEEEEEEE
T ss_pred eEEEecCCC-cccCCCEEEEEEEEEECCCCccCCcEEEEEE
Confidence 334444444 4578999999999999999999999999864
No 24
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=39.16 E-value=26 Score=36.69 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=39.0
Q ss_pred cceEEEEEEEecCCcceEeeEEee---eEEEeeCCeEeeeeccccCCCccCCCCc
Q psy17223 229 GESIAVNVHVANNSNRTVKKIKVS---DICLFSTAQYKCTVAETESDCPIAPVSM 280 (323)
Q Consensus 229 ge~i~v~v~v~N~s~k~vkkikv~---dv~l~s~~~y~~~Va~~e~~~~i~p~~t 280 (323)
|+++.|.|.+.|.|+.. |.+++. ..++| |+.-...+-.....-.+.|+.+
T Consensus 495 G~df~v~l~~~N~s~~~-~~v~~~l~a~~v~Y-tG~~~~~~~~~~~~v~L~p~~~ 547 (692)
T 1vjj_A 495 GKEVNLVLLLKNLSRDT-KTVTVNMTAWTIIY-NGTLVHEVWKDSATMSLDPEEE 547 (692)
T ss_dssp TSCEEEEEEEEECSSSC-EEEEEEEEEEEECT-TCCEEEEEEEEEEEEEECTTCE
T ss_pred CCCEEEEEEEEECCCCC-EEEEEEEEEEEEee-CCccccceEEeeEEEEECCCce
Confidence 99999999999999866 777775 78888 7776666665555557777765
No 25
>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}
Probab=37.45 E-value=43 Score=31.99 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=27.3
Q ss_pred CeeeeeEeeCCC-CCCCcEEeccCCCCCCCceeeEEEEEEEEcc
Q psy17223 21 PNAFPFFFELPP-SCPASVTLQPAPGDTGKPCGVDYELKAFVGE 63 (323)
Q Consensus 21 ~h~FPFsFqLP~-~LP~SF~~~~~~g~~Gk~c~IrY~VKA~I~r 63 (323)
.-..||.+.||. .++||+.-. .+...|+|.|.+.+..
T Consensus 245 ge~IPirl~Lp~~~l~PT~~~~------~~~fsV~Y~Lnlvlvd 282 (341)
T 2fau_A 245 GESIPIRLFLAGYDPTPTMRDV------NKKFSVRYFLNLVLVD 282 (341)
T ss_dssp --CEEEEEESTTTCCCCCEEEE------ETTEEEEEEEEEEEEE
T ss_pred CCEEEEEEEcCCCCCCCcchhc------CCeEEEEEEEEEEEEe
Confidence 358999999998 688988611 2245799999999854
No 26
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=36.65 E-value=26 Score=36.70 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=36.6
Q ss_pred ecceEEEEEEEecCCcceEeeEEee---eEEEeeCCeEeeee-ccccCCCccCCCCc
Q psy17223 228 HGESIAVNVHVANNSNRTVKKIKVS---DICLFSTAQYKCTV-AETESDCPIAPVSM 280 (323)
Q Consensus 228 hge~i~v~v~v~N~s~k~vkkikv~---dv~l~s~~~y~~~V-a~~e~~~~i~p~~t 280 (323)
-|+++.|.|.+.|.|+.. |.+++. ..++| |+.-...+ ......-.+.|+.+
T Consensus 485 ~G~df~v~v~~~N~s~~~-~~v~~~l~a~~v~Y-tG~~~~~~~~~~~~~~~l~p~~~ 539 (687)
T 2q3z_A 485 MGSDFDVFAHITNNTAEE-YVCRLLLCARTVSY-NGILGPECGTKYLLNLTLEPFSE 539 (687)
T ss_dssp TTCCEEEEEEEEECSSSC-EEEEEEEEEEEECT-TCCEEEEEEEEEEEEEEECTTEE
T ss_pred CCCCEEEEEEEEECCCCC-EEEEEEEEEEEEee-CCcccceEeeeeeeEEEECCCce
Confidence 499999999999999876 777776 78888 77766666 33333345555543
No 27
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=36.27 E-value=26 Score=36.88 Aligned_cols=50 Identities=22% Similarity=0.393 Sum_probs=37.6
Q ss_pred cceEEEEEEEecCCcceEeeEEee---eEEEeeCCeEeeeeccccCCCccCCCCc
Q psy17223 229 GESIAVNVHVANNSNRTVKKIKVS---DICLFSTAQYKCTVAETESDCPIAPVSM 280 (323)
Q Consensus 229 ge~i~v~v~v~N~s~k~vkkikv~---dv~l~s~~~y~~~Va~~e~~~~i~p~~t 280 (323)
|+++.|.|.+.|.|+.. |.+++. ..++| |+.-...+-.....-.+.|+.+
T Consensus 530 G~df~v~l~~~N~s~~~-~~v~~~l~a~~v~Y-tG~~~~~~~~~~~~~~L~p~~~ 582 (731)
T 1ex0_A 530 GKDFKLSITFRNNSHNR-YTITAYLSANITFY-TGVPKAEFKKETFDVTLEPLSF 582 (731)
T ss_dssp TCCEEEEEEEEECSSSC-EEEEEEEEEEEECT-TSCEEEEEEEEEEEEEECTTEE
T ss_pred CCCEEEEEEEEECCCCC-EEEEEEEEEEEEee-CCccccceeEeeEEEEECCCce
Confidence 99999999999999977 777775 77788 6765666655444456666654
No 28
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=33.34 E-value=23 Score=37.17 Aligned_cols=51 Identities=12% Similarity=0.187 Sum_probs=36.4
Q ss_pred ecceEEEEEEEecCCcceEeeEEee---eEEEeeCCeEeeeeccccCCCccCCCCc
Q psy17223 228 HGESIAVNVHVANNSNRTVKKIKVS---DICLFSTAQYKCTVAETESDCPIAPVSM 280 (323)
Q Consensus 228 hge~i~v~v~v~N~s~k~vkkikv~---dv~l~s~~~y~~~Va~~e~~~~i~p~~t 280 (323)
-|+++.|.|.+.|.|+.. |.+++. ..++| |+.-...+-.....-.+.|+++
T Consensus 484 ~G~df~v~v~~~N~s~~~-~~v~~~l~a~~v~Y-tG~~~~~~~~~~~~~~L~p~~~ 537 (695)
T 1g0d_A 484 FGTDFDVIVEVKNEGGRD-AHAQLTMLAMAVTY-NSLRRGECQRKTISVTVPAHKA 537 (695)
T ss_dssp TTCCEEEEEEEEECSSSC-EEEEEEEEEEEECT-TCBCCCCCCEEEEEEEECTTEE
T ss_pred CCCCEEEEEEEEECCCCC-EEEEEEEEEEEEee-CCcccCceeEeeEEEEECCCce
Confidence 499999999999998877 777776 77778 6664544444444446666654
No 29
>2icn_B Prolactin-inducible protein; beta-pleated sheet, complex, seminal fluid; HET: NAG BMA MAN P6G; 3.23A {Homo sapiens} PDB: 3es6_B*
Probab=33.30 E-value=29 Score=28.23 Aligned_cols=42 Identities=7% Similarity=0.064 Sum_probs=34.4
Q ss_pred CCceEEEEEeCccceecCCeEEEEEEEeccCcceeeEEEeecCC
Q psy17223 105 PNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVSDSG 148 (323)
Q Consensus 105 sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk~Ikv~L~q 148 (323)
.-|..|+.+||..+ ..||.+.+.+.|-|.=+..|. |++.|..
T Consensus 5 ~qPffveltlPySv-~rgE~f~lkatVfNyL~~Ci~-V~v~L~~ 46 (118)
T 2icn_B 5 RKIIIKNFDIPKSV-RPNDEVTAVLAVQTELKECMV-VKTYLIS 46 (118)
T ss_dssp CCCSEECCCCCSEE-CSSCCEEEEEEEEECCSSCEE-EEEEEEE
T ss_pred cCCEEEEEeCCCcc-cCCCEEEEEEEEEeccCcCEE-EEEEEcC
Confidence 34677888888864 899999999999999988875 7777754
No 30
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=32.49 E-value=24 Score=33.70 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=27.5
Q ss_pred ceecCCeEEEEEEEecc---CcceeeEEEeecCC
Q psy17223 118 LYYHGESIAVNVHVANN---SNRTVKKIKVSDSG 148 (323)
Q Consensus 118 ~Y~PGE~I~V~v~IdN~---Ssk~Vk~Ikv~L~q 148 (323)
+|+|||+|.=+|.|+.. ....+++|++.+.+
T Consensus 43 vY~~GE~VsG~V~I~~~~~~k~l~h~GIki~~~G 76 (340)
T 2r51_A 43 LFYDGETVSGKVSLSLKNPNKRLEHQGIKIEFIG 76 (340)
T ss_dssp EEETBCCEEEEEEEEESSTTSCEEESCEEEEEEE
T ss_pred cCCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEE
Confidence 79999999999999887 66789999999987
No 31
>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis}
Probab=32.25 E-value=47 Score=28.00 Aligned_cols=53 Identities=9% Similarity=0.106 Sum_probs=33.5
Q ss_pred c-ceEEEEEEEecCCcceEeeEEeeeEEEee-CC-eEeeeeccccCC-----CccCCCCccc
Q psy17223 229 G-ESIAVNVHVANNSNRTVKKIKVSDICLFS-TA-QYKCTVAETESD-----CPIAPVSMFD 282 (323)
Q Consensus 229 g-e~i~v~v~v~N~s~k~vkkikv~dv~l~s-~~-~y~~~Va~~e~~-----~~i~p~~t~~ 282 (323)
| +.+.|+|.|.|++.+.+- +-.++.-|+. ++ .|.........+ ..|+||.+.+
T Consensus 45 G~~fviV~VTIeN~g~e~~~-~s~~~F~L~d~dG~~~~~~~~~~~~~~~l~~g~L~pG~kvt 105 (159)
T 3cfu_A 45 DEERLIIEVTMENIGEDSIS-YNFIGFDLRDKNDQSVRPVFSIEEKGRILMGGTLVSGKKVT 105 (159)
T ss_dssp CSEEEEEEEEEEECSSSCEE-EEGGGEEEECTTCCBCCCEECSTTTTTBCCEEEECTTCEEE
T ss_pred CCEEEEEEEEEEECCCCcee-eCcccEEEEeCCCCEEeceeeecccCCcccccccCCCCEEE
Confidence 5 689999999999887662 3333888873 33 343333222222 3788998877
No 32
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=30.84 E-value=49 Score=37.58 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=32.8
Q ss_pred EEEEeEecCCceEEEEEeCccceecCCeEEEEEEEeccCcce
Q psy17223 97 VSKEFMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRT 138 (323)
Q Consensus 97 ~~k~f~f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~ 138 (323)
..+...+..-...+=+..||.+|.|||+|.+.+-+.|..-+.
T Consensus 113 ~~~~v~~~~~~~~~fiqTDR~iYrPGqtV~~r~i~~d~~~~p 154 (1676)
T 3cu7_A 113 KSKRMPITYDNGFLFIHTDKPVYTPDQSVKVRVYSLNDDLKP 154 (1676)
T ss_dssp EEEEECEECCCSEEEEEESCSEECTTCEECEEEEEECTTCSC
T ss_pred EEEEEEEEcCCCcEEEECCCCccCCCCEEEEEEEEECCCCcc
Confidence 345566776667778999999999999999998877765443
No 33
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*
Probab=30.74 E-value=2.3e+02 Score=28.69 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=21.1
Q ss_pred eEEEEEeCcccee-c-CCeEEEEEEEeccCcceeeE
Q psy17223 108 LHLEASLDKELYY-H-GESIAVNVHVANNSNRTVKK 141 (323)
Q Consensus 108 I~L~a~LdK~~Y~-P-GE~I~V~v~IdN~Ssk~Vk~ 141 (323)
..+++..++..|. . ||.+.++++......++|.+
T Consensus 202 feV~~~~~~~~~~~~~~~~~~~~v~a~y~~G~Pv~G 237 (627)
T 3hrz_A 202 FEVRLQPSEKFFYIDGNENFHVSITARYLYGEEVEG 237 (627)
T ss_dssp EEEEEEESSSEEETTCCCCEEEEEEEEETTSCBCCE
T ss_pred EEEEEecCcceEEecCCCEEEEEEEEEECCCCEecc
Confidence 4455556666552 3 67777777777777666654
No 34
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=30.30 E-value=88 Score=35.22 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=32.0
Q ss_pred EEEeEecCCceEEEEEeCccceecCCeEEEEEEEeccCccee
Q psy17223 98 SKEFMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTV 139 (323)
Q Consensus 98 ~k~f~f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~V 139 (323)
.+.+.+..-.-.+=+..||.+|.|||+|.+.+-.-|..-+.+
T Consensus 94 ~~~v~v~~~~~~~fiqTDK~iY~Pgq~V~~rv~~~~~~~~p~ 135 (1451)
T 4acq_A 94 RTTVMVKNEDSLVFVQTDKSIYKPGQTVKFRVVSMDENFHPL 135 (1451)
T ss_dssp EEEEEEECCCCEEEEEESCSEECTTCEEEEEEEEECTTCCBC
T ss_pred EEEEEEEccCccEEEECCCCcCCCCCEEEEEEEEECCCCcCc
Confidence 344566655555677899999999999999988887765554
No 35
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=29.28 E-value=1.8e+02 Score=28.77 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=17.8
Q ss_pred eeeeeEeeCCCCCCCcEEeccCCCCCCCceeeEEEEEEEEcc
Q psy17223 22 NAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGE 63 (323)
Q Consensus 22 h~FPFsFqLP~~LP~SF~~~~~~g~~Gk~c~IrY~VKA~I~r 63 (323)
-.|.+.|+||.+.+. | .|+|.|....
T Consensus 177 G~~~~~f~Lp~~~~~-----------G-----~w~i~v~~~~ 202 (656)
T 4fxk_A 177 SIFQDDFVIPDISEP-----------G-----TWKISARFSD 202 (656)
T ss_dssp SEEEEEEECCTTCCS-----------E-----EEEEEEEESS
T ss_pred ceEEEEecCCCCCCC-----------c-----CEEEEEEEcC
Confidence 467788888876433 3 2888887743
No 36
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=29.21 E-value=1.2e+02 Score=24.32 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=35.5
Q ss_pred eEecCCceEEEEEeCccceecCCeEEEEEEEeccCcceeeEEEeec
Q psy17223 101 FMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVSD 146 (323)
Q Consensus 101 f~f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk~Ikv~L 146 (323)
.++.+..+.+...+-|.. +| .+.|.+.+.|.|...|..+.++.
T Consensus 12 ~~~~~~~l~I~~~~~~~~--~~-~~~i~~~fsN~s~~~it~f~fqa 54 (123)
T 3mnm_A 12 LVNQSPNLKIEFEISRES--NS-VIRIXSFFTNLSSSPISNLVFLL 54 (123)
T ss_dssp EEEECSSEEEEEEEEECS--SS-CEEEEEEEEECSSSCEEEEEEEE
T ss_pred EEEeCCCEEEEEEEEeCC--CC-eEEEEEEEecCCCCccccEEEEE
Confidence 456777888888888865 54 78899999999999999988876
No 37
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=28.36 E-value=83 Score=35.75 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=29.9
Q ss_pred EEEeEecCCceEEEEEeCccceecCCeEEEEEEEeccCcce
Q psy17223 98 SKEFMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRT 138 (323)
Q Consensus 98 ~k~f~f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~ 138 (323)
.+...+..-.-.+-+..||.+|.|||+|.+.+-+-|..-+.
T Consensus 117 ~~~v~~~~~~~~~fiqTDR~iYrPGqtV~~r~i~~d~~~~p 157 (1661)
T 2b39_A 117 EKVVLISLQSGYLFIQTDKTIYTPGSTVLYRVFTVDHKLLP 157 (1661)
T ss_dssp EEEEEECCCCCEEEEEESCSEECTTSEEEEEEEEECTTSCC
T ss_pred EEEEEEecCCCcEEEecCCCccCCCCEEEEEEEEECCCCcc
Confidence 34445543333477889999999999999998887765553
No 38
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=28.19 E-value=63 Score=31.38 Aligned_cols=71 Identities=15% Similarity=0.279 Sum_probs=43.0
Q ss_pred hccCcchhhccceeeEEe-ecceEEEEEEEecCCcceEeeEEee--eEEEeeCCe------Eee-eecc----ccCCCcc
Q psy17223 210 LKKGSKEKSKKKYLFLYY-HGESIAVNVHVANNSNRTVKKIKVS--DICLFSTAQ------YKC-TVAE----TESDCPI 275 (323)
Q Consensus 210 ~~~~~~~~s~~k~~~~yy-hge~i~v~v~v~N~s~k~vkkikv~--dv~l~s~~~------y~~-~Va~----~e~~~~i 275 (323)
+..+.++.-.++ |.|. -|..+.+++.|+|++++-|+==... +|..-.-+- |-. .+|. +....||
T Consensus 245 ~~~~~V~~~v~~--A~Y~vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI 322 (382)
T 1yew_A 245 LPAPTVSVKVED--ATYRVPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPL 322 (382)
T ss_dssp CCCCSEEEEEEE--EEEESSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCB
T ss_pred CCCCceEEEeec--cEEecCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCc
Confidence 434455555556 6665 6999999999999999887644443 444432111 211 1222 2334599
Q ss_pred CCCCccc
Q psy17223 276 APVSMFD 282 (323)
Q Consensus 276 ~p~~t~~ 282 (323)
+||.|-+
T Consensus 323 ~PGETr~ 329 (382)
T 1yew_A 323 APGETRT 329 (382)
T ss_dssp CTTCEEE
T ss_pred CCCceeE
Confidence 9998744
No 39
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=25.09 E-value=70 Score=33.00 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=36.2
Q ss_pred cCCceEEEEEeCccceecCCeEEEEEEEeccCcceeeEEEeecCC
Q psy17223 104 SPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVSDSG 148 (323)
Q Consensus 104 ~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk~Ikv~L~q 148 (323)
...|+.|+..||+. ..+||.+.|.+.|.|.+.+.++ +.|.+.-
T Consensus 150 v~kpf~v~~~lP~~-v~~GD~~~i~~~V~N~~~~~~~-v~v~l~~ 192 (767)
T 4fxk_B 150 VFREFHLHLRLPMS-VRRFEQLELRPVLYNYLDKNLT-VSVHVSP 192 (767)
T ss_dssp CCCSEEEECCCCSC-EETTCEEEECCEEEECSSSCEE-EEEEECC
T ss_pred EeccEEEecCCCCe-eccCCEEEEEEEEEECCCCCEE-EEEEEEe
Confidence 36788899999986 6899999999999999988775 7777753
No 40
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=24.91 E-value=75 Score=36.36 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=28.5
Q ss_pred EEEeEecCCceEEEEEeCccceecCCeEEEEEEEeccCccee
Q psy17223 98 SKEFMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTV 139 (323)
Q Consensus 98 ~k~f~f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~V 139 (323)
.+...++.-.-.+=++.||.+|.|||+|.+.+-.-|..-+.+
T Consensus 116 ~k~V~v~~~~~~~FiqTDk~iYrPGqtV~~rvi~~~~~~~p~ 157 (1642)
T 3prx_B 116 EKVVLLSYQSSFLFIQTDKGIYTPGSPVLYRVFSMDHNTSKM 157 (1642)
T ss_dssp EEEEEEECCCCCEEEEESCSEECTTCEEEEEEEECCC-----
T ss_pred EEEEEEEcCCCeEEEEcCCCcCCCCCEEEEEEEEEcCCCccc
Confidence 344556655555667899999999999999988877665543
No 41
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=24.26 E-value=1.3e+02 Score=23.96 Aligned_cols=45 Identities=13% Similarity=0.295 Sum_probs=33.7
Q ss_pred EeEecCCceEEEEEeCcccee-----cCCeEEEEEEEeccCcc---eeeEEEe
Q psy17223 100 EFMMSPNKLHLEASLDKELYY-----HGESIAVNVHVANNSNR---TVKKIKV 144 (323)
Q Consensus 100 ~f~f~sG~I~L~a~LdK~~Y~-----PGE~I~V~v~IdN~Ssk---~Vk~Ikv 144 (323)
.+.|+++.=+|.|.||...+. |++.|.|.-+|+..-+. .|++|++
T Consensus 54 ~Y~F~D~TG~I~VeId~~~w~g~~v~p~~~Vri~GevDkd~~~~eIdV~~i~~ 106 (109)
T 1nnx_A 54 LYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRK 106 (109)
T ss_dssp EEEEEETTEEEEEECCGGGSTTCCCCTTSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEEEECCCccEEEEEChhhcCCcccCCCCEEEEEEEECCCCCceEEEEEEEEE
Confidence 467888888899999998664 88999999999974322 4555543
No 42
>1aoh_A Cellulosome-integrating protein CIPA; cellulosome subunit, B-barrel, cellulose degradation; 1.70A {Clostridium thermocellum} SCOP: b.2.2.2 PDB: 1anu_A
Probab=21.28 E-value=1.2e+02 Score=25.28 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=34.1
Q ss_pred EEEEeCccceecCCeEEEEEEEeccCcceeeEEEeecCC
Q psy17223 110 LEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVSDSG 148 (323)
Q Consensus 110 L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk~Ikv~L~q 148 (323)
+++.+.+.--.+|+++.|-|.+.|-.++-|....+.+.=
T Consensus 6 ~~v~ig~~~~~~Gdtv~VpV~~~~vp~~gI~s~~f~l~Y 44 (147)
T 1aoh_A 6 VRIKVDTVNAKPGDTVRIPVRFSGIPSKGIANCDFVYSY 44 (147)
T ss_dssp EEEEECEEEECTTCEEEEEEEEESCCTTCBSEEEEEEEC
T ss_pred EEEEEccccccCCCEEEEEEEEecCCccCeEEEEEEEEE
Confidence 677778888899999999999999988889988888864
No 43
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=20.82 E-value=1.4e+02 Score=24.01 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=32.6
Q ss_pred eEecCCceEEEEEeCccceecCCeEEEEEEEeccCcceee
Q psy17223 101 FMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVK 140 (323)
Q Consensus 101 f~f~sG~I~L~a~LdK~~Y~PGE~I~V~v~IdN~Ssk~Vk 140 (323)
.-|..|-.+|-..=-+.-..+||.+++++..+|.....|.
T Consensus 75 v~l~PGG~HvML~gl~~~l~~G~~v~ltL~Fe~~~~v~v~ 114 (120)
T 2k6w_A 75 VELKPGGYHFMLLGLKRPLKAGEEVELDLLFAGGKVLKVV 114 (120)
T ss_dssp EEECTTTEEEEEEEESSCBCTTCEEEEEEEETTTEEEEEE
T ss_pred EeccCCceEEEEeCCCCCCCCCCEEEEEEEECCCCeEEEE
Confidence 3467888887777667889999999999999998876653
Done!