RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17223
(323 letters)
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A
{Ambystoma tigrinum}
Length = 392
Score = 196 bits (499), Expect = 3e-60
Identities = 80/138 (57%), Positives = 104/138 (75%)
Query: 8 VTFGQERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETAED 67
+T QE+LMKKLG +A+PF F++ + P SVTLQP P DTGK CGVD+E+KAF E E+
Sbjct: 94 LTPLQEKLMKKLGAHAYPFCFKMGTNLPCSVTLQPGPDDTGKSCGVDFEVKAFCAENLEE 153
Query: 68 KIHKRNSVRLAIRKIMYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAV 127
KIHKRNSV+L IRK+ +AP+ G P E++++FM+S LHLEASLDKE+YYHGE I V
Sbjct: 154 KIHKRNSVQLVIRKVQFAPANLGVAPKTEITRQFMLSDRPLHLEASLDKEIYYHGEPINV 213
Query: 128 NVHVANNSNRTVKKIKVS 145
NV + N + + VKKIK+
Sbjct: 214 NVKINNTTGKIVKKIKII 231
Score = 72.5 bits (177), Expect = 2e-14
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 225 LYYHGESIAVNVHVANNSNRTVKKIKVS-----DICLFSTAQYKCTVAETESDCPIAPVS 279
+YYHGE I VNV + N + + VKKIK+ D+ LFS +Y TV E++ +A S
Sbjct: 204 IYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVLFSLDKYVKTVCAEETNDTVAANS 263
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing,
signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11
b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A
2wtr_B 3gc3_A 3p2d_A
Length = 393
Score = 193 bits (490), Expect = 8e-59
Identities = 93/138 (67%), Positives = 113/138 (81%)
Query: 8 VTFGQERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETAED 67
+T QERL+KKLG +A+PF FE+PP+ P SVTLQP P DTGK CGVDYE+KAF E E+
Sbjct: 97 LTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEE 156
Query: 68 KIHKRNSVRLAIRKIMYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAV 127
KIHKRNSVRL IRK+ YAP + G QP+ E +++F+MS LHLEASLDKE+YYHGE I+V
Sbjct: 157 KIHKRNSVRLVIRKVQYAPERPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISV 216
Query: 128 NVHVANNSNRTVKKIKVS 145
NVHV NN+N+TVKKIK+S
Sbjct: 217 NVHVTNNTNKTVKKIKIS 234
Score = 75.2 bits (184), Expect = 2e-15
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 5/64 (7%)
Query: 226 YYHGESIAVNVHVANNSNRTVKKIKV-----SDICLFSTAQYKCTVAETESDCPIAPVSM 280
YYHGE I+VNVHV NN+N+TVKKIK+ +DICLF+TAQYKC VA E+D +AP S
Sbjct: 208 YYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEADDTVAPSST 267
Query: 281 FDTE 284
F
Sbjct: 268 FCKV 271
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment,
SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A
1ayr_A
Length = 380
Score = 189 bits (482), Expect = 8e-58
Identities = 76/142 (53%), Positives = 90/142 (63%), Gaps = 3/142 (2%)
Query: 7 KVTFGQERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETA- 65
T QE L+KKLG N +PF P P SV LQPAP D GK CGVD+E+KAF +
Sbjct: 109 ATTRLQESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTD 168
Query: 66 --EDKIHKRNSVRLAIRKIMYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGE 123
EDKI K++SVRL IRK+ +AP G QP E S +F MS L L SL KE+YYHGE
Sbjct: 169 VEEDKIPKKSSVRLLIRKVQHAPRDMGPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGE 228
Query: 124 SIAVNVHVANNSNRTVKKIKVS 145
I V V V N++ +TVKKIKV
Sbjct: 229 PIPVTVAVTNSTEKTVKKIKVL 250
Score = 72.5 bits (177), Expect = 2e-14
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 225 LYYHGESIAVNVHVANNSNRTVKKIKVS-----DICLFSTAQYKCTVAETESDCPIAPVS 279
+YYHGE I V V V N++ +TVKKIKV ++ L+S+ Y TVA E+ + P S
Sbjct: 223 IYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNS 282
Query: 280 -MFDTEDLAMLRHGFKRMFGHAFSTSLAMPRDELA 313
+ T L L + G A + LA
Sbjct: 283 SLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLA 317
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.031
Identities = 58/321 (18%), Positives = 89/321 (27%), Gaps = 120/321 (37%)
Query: 20 GPNAFP---FFFELPPSCPASVTLQPA------------PGD--------TGKPCGVDYE 56
P+ P + +P SCP +Q A PG+ TG G+
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL--- 277
Query: 57 LKAFVGETAEDKIHKRNSVRLAIRKIMY---------APSKQGEQPSVEVSKE------- 100
+ A + SVR AI +++ P+ +E S E
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAIT-VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 101 FMMS---PNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVSDSG-AEDDQDLK 156
M+S + ++ ++K + V + + N + V V SG + L
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV----V--SGPPQSLYGLN 390
Query: 157 DELADSDIDGMEEDDLPNIKAWGKNKRMYYNTDYVDDDHGGIQSGTGFVWFEWLKKGSKE 216
L KA G QS F S+
Sbjct: 391 LTLR-------------KAKA----------------PSGLDQSRIPF---------SER 412
Query: 217 KSKKKYLFLYYHGESIAVNVHVANNS---NRTVKKIK---VSDICLFSTAQYKCTVAETE 270
K K FL +A H S I V + F+ +
Sbjct: 413 KLKFSNRFL-----PVASPFH----SHLLVPASDLINKDLVKNNVSFNAKDIQI------ 457
Query: 271 SDCPIAPVSMFDTEDLAMLRH 291
PV +DT D + LR
Sbjct: 458 ------PV--YDTFDGSDLRV 470
Score = 32.3 bits (73), Expect = 0.25
Identities = 31/197 (15%), Positives = 51/197 (25%), Gaps = 72/197 (36%)
Query: 166 GMEE-DDLPNIKA-WGKNKRMYYNTDYVDDDHGGIQSGTGFVWFEWLKKGSKEKSKKKYL 223
GM+ + W R D+H + GF + + +
Sbjct: 1632 GMDLYKTSKAAQDVW---NRA--------DNH--FKDTYGFSILDIVINNPVNLT---IH 1675
Query: 224 FLYYHGESIAVN-----VHVANNSNRTVKKI------KVSDIC-------LFST------ 259
F G+ I N + +KI + L +T
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 260 ------AQYKCTVAETESDCPI-------------APVSM---FDTEDLAMLRHGFKRMF 297
A ++ +++ P A S+ E L + F R
Sbjct: 1736 LTLMEKAAFE--DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV--FYR-- 1789
Query: 298 GHAFSTSLAMPRDELAG 314
G A+PRDEL
Sbjct: 1790 GMTMQV--AVPRDELGR 1804
Score = 28.1 bits (62), Expect = 5.8
Identities = 54/303 (17%), Positives = 80/303 (26%), Gaps = 128/303 (42%)
Query: 28 FELPPS--CPASVTLQ-------PAPGDTGKPCGVDYELKAFVGETAEDKIHKRNSVRLA 78
+P + AS LQ P P + D E AE L
Sbjct: 20 LLVPTASFFIASQ-LQEQFNKILPEPTEG---FAADDEPTT----PAE----------LV 61
Query: 79 IRKIMY-----APSKQGEQPSV--EVSKEF---MMSPNKLH-LEASLDKEL--------- 118
+ + Y PSK G+ V EF + N +H L A L +E
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 119 ----YYHGESIAVNVHVANNSNRTVKKIKVSDSG---AEDDQDLK--------------- 156
Y +A R K S+S A + + +
Sbjct: 122 LIKNYITARIMA---------KRPFDK--KSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 157 DELAD---------SD-IDGMEEDDLPNIKAWGKNKRMYYNTDYVDDDHGGIQSGTGFVW 206
+EL D D I E I+ ++++ G
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF---------------TQGLNI 215
Query: 207 FEWLKKGSKEKSKKKYLFLYYHGESIAVNVHVANNSNRTVKKIKVSDICLFSTAQYKCTV 266
EWL+ S K YL SI ++ + I + A Y
Sbjct: 216 LEWLENPSNTPDKD-YL------LSIPISCPL---------------IGVIQLAHY-VVT 252
Query: 267 AET 269
A+
Sbjct: 253 AKL 255
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 30.7 bits (69), Expect = 0.66
Identities = 20/151 (13%), Positives = 39/151 (25%), Gaps = 16/151 (10%)
Query: 68 KIHKRNSVRLAIRKIMYAPS-KQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIA 126
K H N +R+ ++ P + ++ + LD+ Y G
Sbjct: 63 KTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAV-LDRCFYLAGLPRP 121
Query: 127 VNVHVANNSNRTVKKIKVSDSGAEDDQDLKDELADSDIDGME-EDDLPNIKAWGKNKRMY 185
++ K E Q + +DG + +
Sbjct: 122 DVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLE-------------I 168
Query: 186 YNTDYVDDDHGGIQSGTGFVWFEWLKKGSKE 216
N + + G F F+ L S +
Sbjct: 169 SNALEISSEMGLKILEDVFPEFKDLTAVSSK 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 30.1 bits (68), Expect = 0.89
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 14/95 (14%)
Query: 130 HVANNSNRTVKKIKVSDSGAEDDQDLKDELADSDIDGMEEDDLP-NIKAWGKNKRMYYNT 188
+V + K +++ G E + + D G D P + K+
Sbjct: 164 NVEVKGEKPAKLCVIAECG-ELKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKIL-- 220
Query: 189 DYVDDDHGGI-QSGTGFVWFEWLKKGSKEKSKKKY 222
+D + G + K + E + KKY
Sbjct: 221 LISED----LKNIGN-----TFFKSQNWEMAIKKY 246
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 29.9 bits (67), Expect = 1.2
Identities = 20/151 (13%), Positives = 39/151 (25%), Gaps = 16/151 (10%)
Query: 68 KIHKRNSVRLAIRKIMYAPS-KQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIA 126
K H N +R+ ++ P + ++ + LD+ Y G
Sbjct: 63 KTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAV-LDRCFYLAGLPRP 121
Query: 127 VNVHVANNSNRTVKKIKVSDSGAEDDQDLKDELADSDIDGME-EDDLPNIKAWGKNKRMY 185
++ K E Q + +DG + +
Sbjct: 122 DVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLE-------------I 168
Query: 186 YNTDYVDDDHGGIQSGTGFVWFEWLKKGSKE 216
N + + G F F+ L S +
Sbjct: 169 SNALEISSEMGLKILEDVFPEFKDLTAVSSK 199
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 29.9 bits (67), Expect = 1.3
Identities = 20/151 (13%), Positives = 39/151 (25%), Gaps = 16/151 (10%)
Query: 68 KIHKRNSVRLAIRKIMYAPS-KQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIA 126
K H N +R+ ++ P + ++ + LD+ Y G
Sbjct: 63 KTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAV-LDRCFYLAGLPRP 121
Query: 127 VNVHVANNSNRTVKKIKVSDSGAEDDQDLKDELADSDIDGME-EDDLPNIKAWGKNKRMY 185
++ K E Q + +DG + +
Sbjct: 122 DVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLE-------------I 168
Query: 186 YNTDYVDDDHGGIQSGTGFVWFEWLKKGSKE 216
N + + G F F+ L S +
Sbjct: 169 SNALEISSEMGLKILEDVFPEFKDLTAVSSK 199
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.8
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 12 QERLMKKLGPNAFPFFFELPPSCPA---SVTLQ 41
+++ +KKL + + S PA T++
Sbjct: 18 EKQALKKL-QASLKLY--ADDSAPALAIKATME 47
Score = 27.6 bits (60), Expect = 4.2
Identities = 6/46 (13%), Positives = 18/46 (39%), Gaps = 17/46 (36%)
Query: 71 KRNSVR-LAIRKIMYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLD 115
++ +++ L +YA P+ L ++A+++
Sbjct: 18 EKQALKKLQASLKLYAD---DSAPA-------------LAIKATME 47
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 29.1 bits (65), Expect = 2.5
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 17/86 (19%)
Query: 150 EDDQDLKDELADSDIDGMEEDDLPNIKAWG-----KNKRMYYNTDYVDDDHGGIQSGTGF 204
D+ +D+L D + + K + + YN D + + T
Sbjct: 84 TPDKAFQDKLYPFTWDAVRYNG----KLIAYPIAVEALSLIYNKDLLPN-----PPKT-- 132
Query: 205 VWFEWLKKGSKEKSKKKYLFLYYHGE 230
W E + K+K K ++ E
Sbjct: 133 -WEEIPALDKELKAKGKSALMFNLQE 157
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 3.2
Identities = 30/248 (12%), Positives = 73/248 (29%), Gaps = 68/248 (27%)
Query: 22 NAFPFFFELPPSCP-------ASVTLQPAPGDTGKPCGVDYE-----------LKAFVGE 63
NAF SC VT + T + L ++
Sbjct: 260 NAFNL------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 64 TAED---KIHKRNSVRLAI----RKIMYAPSKQGEQPSVE-VSKEFMMSPNKLHLEASLD 115
+D ++ N RL+I + A + + + ++ S N LE +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN--VLEPAEY 371
Query: 116 KELYYHGESIAV---NVHVANNSNRTVKKIKV--SDSGAEDDQDLKDELADSDIDGMEED 170
++++ + ++V + H+ + + D D + ++L +
Sbjct: 372 RKMF---DRLSVFPPSAHI------PTILLSLIWFDVIKSDVMVVVNKLHKYSL------ 416
Query: 171 DLPNIKAWGKNKRMYYNTDYVD-----DD----HGG-IQSGTGFVWFEWLKKGSKEKSKK 220
++ K + + Y++ ++ H + F+ +
Sbjct: 417 ----VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 221 KYLFLYYH 228
Y + +H
Sbjct: 473 FYSHIGHH 480
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 28.4 bits (63), Expect = 3.7
Identities = 20/151 (13%), Positives = 39/151 (25%), Gaps = 16/151 (10%)
Query: 68 KIHKRNSVRLAIRKIMYAPS-KQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIA 126
K H N +R+ ++ P + ++ + LD+ Y G
Sbjct: 63 KTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAV-LDRCFYLAGLPRP 121
Query: 127 VNVHVANNSNRTVKKIKVSDSGAEDDQDLKDELADSDIDGME-EDDLPNIKAWGKNKRMY 185
++ K E Q + +DG + +
Sbjct: 122 DVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLE-------------I 168
Query: 186 YNTDYVDDDHGGIQSGTGFVWFEWLKKGSKE 216
N + + G F F+ L S +
Sbjct: 169 SNALEISSEMGLKILEDVFPEFKDLTAVSSK 199
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 28.0 bits (62), Expect = 4.5
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 191 VDDDHGGIQSGTGFVWFEWLKKGSKEKSKKKYLFLY 226
V +Q G F+ L K + + + ++LFL
Sbjct: 231 VRGQGDLLQPGREFLKEGTLMKVTGKNRRPRHLFLM 266
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 28.1 bits (63), Expect = 5.2
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 17/82 (20%)
Query: 150 EDDQDLKDELADSDIDGMEEDDLPNIKAWG-----KNKRMYYNTDYVDDDHGGIQSGTGF 204
+D+L D + + K + + YN D + + T
Sbjct: 80 TPAAAFQDKLYPFTWDAVRYNG----KLIAYPIAVEALSLIYNKDLLPN-----PPKT-- 128
Query: 205 VWFEWLKKGSKEKSKKKYLFLY 226
W E + K+K K ++
Sbjct: 129 -WEEIPALDKELKAKGKSALMF 149
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera;
TEM, beta-lactamase, MBP, allosteric regulation, zinc
bindin maltose binding; 2.29A {Escherichia coli} PDB:
4dxc_A
Length = 637
Score = 27.2 bits (60), Expect = 7.9
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 17/86 (19%)
Query: 150 EDDQDLKDELADSDIDGMEEDDLPNIKAWG-----KNKRMYYNTDYVDDDHGGIQSGTGF 204
D+ +D+L D + + K + + YN D + + T
Sbjct: 80 TPDKAFQDKLYPFTWDAVRYNG----KLIAYPIAVEALSLIYNKDLLPNP-----PKT-- 128
Query: 205 VWFEWLKKGSKEKSKKKYLFLYYHGE 230
W E + K+K K ++ E
Sbjct: 129 -WEEIPALDKELKAKGKSALMFNLQE 153
>3qc5_X Platelet binding protein GSPB; carbohydrate/sugar binding, sugar
binding protein; HET: GOL; 1.40A {Streptococcus
gordonii} PDB: 3qc6_X 3qd1_X*
Length = 360
Score = 27.0 bits (58), Expect = 8.4
Identities = 19/167 (11%), Positives = 47/167 (28%), Gaps = 6/167 (3%)
Query: 85 APSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAVNVHV------ANNSNRT 138
+ + + S ++ ++P ++ + + E+ V ++ ++
Sbjct: 22 SVTTSFDDTSRLLTWTINLTPRQVKSNLGALVSISGNQETRTVTINGKNAANGGVYNSGG 81
Query: 139 VKKIKVSDSGAEDDQDLKDELADSDIDGMEEDDLPNIKAWGKNKRMYYNTDYVDDDHGGI 198
+ +S + + ++ D+ + L + V G
Sbjct: 82 AWNLYTGESVNNNVLRITTQVNDTGGEVKLGLRLVTSDKKITKTNLPLEFSQVAATTNGS 141
Query: 199 QSGTGFVWFEWLKKGSKEKSKKKYLFLYYHGESIAVNVHVANNSNRT 245
G+ K + Y GES V +NSN
Sbjct: 142 WDKAGYNTTIVEKDTERPVVNVPSEITVYRGESFEYFATVTDNSNAF 188
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 8.8
Identities = 24/164 (14%), Positives = 56/164 (34%), Gaps = 43/164 (26%)
Query: 152 DQDLKDELADSDIDG------ME-------EDDLPNIKAWGKNKRMYYNTDYVDDDHGGI 198
D K+ + D D+ +E E +L N K + + V++D
Sbjct: 878 DSKTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEKKEMI--QEVIVEED---- 931
Query: 199 QSGTGFVWFEWLKKGSKEKSKKKYLFLYYHGESIAVNVHVANNSNRTVKKIKVSDICLFS 258
FE SKE +++ F + HG+ + + + +VK +K + + +
Sbjct: 932 -----LEPFE----ASKETAEQ---FKHQHGDKVDI-FEIPETGEYSVKLLKGATLYIPK 978
Query: 259 TAQYKCTVA-ETESDCPIAPVSMFDTEDLAMLRHGFKRM--FGH 299
++ VA + + ++ + + ++
Sbjct: 979 ALRFDRLVAGQIPTG--------WNAKTYGISDDIISQVDPITL 1014
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.390
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,919,130
Number of extensions: 291413
Number of successful extensions: 715
Number of sequences better than 10.0: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 29
Length of query: 323
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 229
Effective length of database: 4,077,219
Effective search space: 933683151
Effective search space used: 933683151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.1 bits)