RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17223
(323 letters)
>d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus),
beta-arrestin 1 [TaxId: 9913]}
Length = 171
Score = 150 bits (381), Expect = 1e-45
Identities = 54/75 (72%), Positives = 62/75 (82%)
Query: 12 QERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETAEDKIHK 71
QERL+KKLG +A+PF FE+PP+ P SVTLQP P DTGK CGVDYE+KAF E E+KIHK
Sbjct: 97 QERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHK 156
Query: 72 RNSVRLAIRKIMYAP 86
RNSVRL IRK+ YAP
Sbjct: 157 RNSVRLVIRKVQYAP 171
>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual
arrestin [TaxId: 9913]}
Length = 173
Score = 143 bits (363), Expect = 7e-43
Identities = 44/78 (56%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 12 QERLMKKLGPNAFPFFFELPPSCPASVTLQPAPGDTGKPCGVDYELKAFVGETA---EDK 68
QE L+KKLG N +PF P P SV LQPAP D GK CGVD+E+KAF + EDK
Sbjct: 95 QESLIKKLGANTYPFLLTFPDYLPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDK 154
Query: 69 IHKRNSVRLAIRKIMYAP 86
I K++SVRL IRK+ +AP
Sbjct: 155 IPKKSSVRLLIRKVQHAP 172
>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus),
beta-arrestin 1 [TaxId: 9913]}
Length = 218
Score = 90.9 bits (225), Expect = 2e-22
Identities = 38/58 (65%), Positives = 49/58 (84%)
Query: 88 KQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVS 145
+ G QP+ E +++F+MS LHLEASLDKE+YYHGE I+VNVHV NN+N+TVKKIK+S
Sbjct: 2 RPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKIS 59
Score = 63.6 bits (154), Expect = 2e-12
Identities = 40/61 (65%), Positives = 47/61 (77%), Gaps = 5/61 (8%)
Query: 226 YYHGESIAVNVHVANNSNRTVKKIKVS-----DICLFSTAQYKCTVAETESDCPIAPVSM 280
YYHGE I+VNVHV NN+N+TVKKIK+S DICLF+TAQYKC VA E+D +AP S
Sbjct: 33 YYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEADDTVAPSST 92
Query: 281 F 281
F
Sbjct: 93 F 93
>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual
arrestin [TaxId: 9913]}
Length = 211
Score = 87.8 bits (217), Expect = 3e-21
Identities = 31/56 (55%), Positives = 36/56 (64%)
Query: 90 GEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIAVNVHVANNSNRTVKKIKVS 145
G QP E S +F MS L L SL KE+YYHGE I V V V N++ +TVKKIKV
Sbjct: 3 GPQPRAEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVL 58
Score = 68.9 bits (168), Expect = 2e-14
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 226 YYHGESIAVNVHVANNSNRTVKKIKVS-----DICLFSTAQYKCTVAETESDCPIAPVSM 280
YYHGE I V V V N++ +TVKKIKV ++ L+S+ Y TVA E+ + P S
Sbjct: 32 YYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQEKVPPNSS 91
Query: 281 F 281
Sbjct: 92 L 92
>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida
albicans) [TaxId: 5476]}
Length = 394
Score = 27.2 bits (59), Expect = 3.1
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 3/61 (4%)
Query: 169 EDDLPNIKAWGKNK-RMYYNTDYVDDDHGGIQSGTGFVWFEWLKKGSKEKSKKKYLFLYY 227
E D I G N R+ + E +++ +++
Sbjct: 71 EQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLEKALGWARK--NNIRVWIDL 128
Query: 228 H 228
H
Sbjct: 129 H 129
>d1lm4a_ d.167.1.1 (A:) Peptide deformylase {Staphylococcus aureus
[TaxId: 1280]}
Length = 194
Score = 26.3 bits (57), Expect = 4.1
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 67 DKIHKRNSVRLAIRKIMYAPSKQGEQPSVEVSKEFMMSPNKLHLEASLDKELYYHGESIA 126
DKIH + L ++ I+ Q + E+ + L A + + E IA
Sbjct: 3 DKIHHHHHHMLTMKDIIRDGHPTLRQKAAELELPLTKEEKET-LIAMREFLVNSQDEEIA 61
Query: 127 VNVHVANNSNRTVKKIKVS 145
+ + +I +S
Sbjct: 62 KRYGLRSGVGLAAPQINIS 80
>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 152
Score = 25.3 bits (55), Expect = 8.4
Identities = 7/40 (17%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 141 KIKVSDSGAEDDQDLKDELADSDIDGMEEDDL-PNIKAWG 179
++K + + + + +++ A D +++ DL + WG
Sbjct: 19 ELKKAGNPLDVRERIENIYAKQGFDSIDKTDLRGRFRWWG 58
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus
influenzae [TaxId: 727]}
Length = 92
Score = 24.2 bits (53), Expect = 9.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 116 KELYYHGESIAVNVHVANNSNRTVKKIKVSDSGAEDDQDLKDEL 159
+L GES A V + N ++I + S EDD+++ ++L
Sbjct: 23 AQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDL 66
>d2ox7a1 b.172.1.1 (A:3-145) Hypothetical protein EF1440
{Enterococcus faecalis [TaxId: 1351]}
Length = 143
Score = 24.8 bits (53), Expect = 9.9
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 173 PNIKAWGK-NKRMYYNTDYVDDDHGGIQSGTGFVWFEWLKKGSKEKSKKKYLFLYY 227
P +AW K M N + DD + + + S+ + +
Sbjct: 3 PKFRAWDTYEKEMLENVTPLFDDSNSMIAIITDFQIKGSPGTSEIEIGSYDTTFNW 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.390
Gapped
Lambda K H
0.267 0.0455 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,207,566
Number of extensions: 56941
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 15
Length of query: 323
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,240,546
Effective search space: 295249948
Effective search space used: 295249948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.9 bits)