BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17227
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QOW|A Chain A, Dot1l Structure In Complex With Sam
pdb|3QOX|A Chain A, Dot1l Structure In Complex With Sah
Length = 426
Score = 246 bits (629), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 115/187 (61%), Positives = 139/187 (74%), Gaps = 1/187 (0%)
Query: 2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I T DD+F
Sbjct: 112 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 171
Query: 62 XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
T CK +GVEKAD+PAKYAE M F++WM+WYGK+H E+ L +G
Sbjct: 172 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 231
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
DFL+EE RE+I S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI
Sbjct: 232 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 291
Query: 181 RNLTDGG 187
RNL+D G
Sbjct: 292 RNLSDIG 298
>pdb|3SX0|A Chain A, Crystal Structure Of Dot1l In Complex With A Brominated
Sah Analog
pdb|4EQZ|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed2
pdb|4ER0|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed1
pdb|4ER7|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0947
Length = 421
Score = 246 bits (629), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 115/187 (61%), Positives = 139/187 (74%), Gaps = 1/187 (0%)
Query: 2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I T DD+F
Sbjct: 103 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 162
Query: 62 XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
T CK +GVEKAD+PAKYAE M F++WM+WYGK+H E+ L +G
Sbjct: 163 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 222
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
DFL+EE RE+I S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI
Sbjct: 223 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 282
Query: 181 RNLTDGG 187
RNL+D G
Sbjct: 283 RNLSDIG 289
>pdb|3UWP|A Chain A, Crystal Structure Of Dot1l In Complex With
5-Iodotubercidin
Length = 438
Score = 246 bits (629), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 115/187 (61%), Positives = 139/187 (74%), Gaps = 1/187 (0%)
Query: 2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I T DD+F
Sbjct: 120 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 179
Query: 62 XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
T CK +GVEKAD+PAKYAE M F++WM+WYGK+H E+ L +G
Sbjct: 180 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
DFL+EE RE+I S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI
Sbjct: 240 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 299
Query: 181 RNLTDGG 187
RNL+D G
Sbjct: 300 RNLSDIG 306
>pdb|1NW3|A Chain A, Structure Of The Catalytic Domain Of Human Dot1l, A
Non-Set Domain Nucleosomal Histone Methyltransferase
Length = 416
Score = 246 bits (628), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 115/187 (61%), Positives = 139/187 (74%), Gaps = 1/187 (0%)
Query: 2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I T DD+F
Sbjct: 102 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 161
Query: 62 XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
T CK +GVEKAD+PAKYAE M F++WM+WYGK+H E+ L +G
Sbjct: 162 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 221
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
DFL+EE RE+I S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI
Sbjct: 222 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 281
Query: 181 RNLTDGG 187
RNL+D G
Sbjct: 282 RNLSDIG 288
>pdb|4EK9|A Chain A, Crystal Structure Of Dot1l In Complex With Epz000004
pdb|4EKG|A Chain A, Crystal Structure Of Dot1l In Complex With Epz003696
pdb|4EKI|A Chain A, Crystal Structure Of Dot1l In Complex With Epz004777
Length = 425
Score = 246 bits (628), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 115/187 (61%), Positives = 139/187 (74%), Gaps = 1/187 (0%)
Query: 2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I T DD+F
Sbjct: 111 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 170
Query: 62 XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
T CK +GVEKAD+PAKYAE M F++WM+WYGK+H E+ L +G
Sbjct: 171 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 230
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
DFL+EE RE+I S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI
Sbjct: 231 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 290
Query: 181 RNLTDGG 187
RNL+D G
Sbjct: 291 RNLSDIG 297
>pdb|4ER5|A Chain A, Crystal Structure Of Human Dot1l In Complex With 2
Molecules Of Epz004777
pdb|4ER6|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0946
Length = 413
Score = 246 bits (628), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 115/187 (61%), Positives = 139/187 (74%), Gaps = 1/187 (0%)
Query: 2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I T DD+F
Sbjct: 103 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 162
Query: 62 XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
T CK +GVEKAD+PAKYAE M F++WM+WYGK+H E+ L +G
Sbjct: 163 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 222
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
DFL+EE RE+I S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI
Sbjct: 223 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 282
Query: 181 RNLTDGG 187
RNL+D G
Sbjct: 283 RNLSDIG 289
>pdb|3SR4|A Chain A, Crystal Structure Of Human Dot1l In Complex With A
Selective Inhibitor
Length = 351
Score = 246 bits (628), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 118/202 (58%), Positives = 145/202 (71%), Gaps = 6/202 (2%)
Query: 2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I T DD+F
Sbjct: 102 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 161
Query: 62 XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
T CK +GVEKAD+PAKYAE M F++WM+WYGK+H E+ L +G
Sbjct: 162 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 221
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
DFL+EE RE+I S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI
Sbjct: 222 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 281
Query: 181 RNLTDGGK-----KVPPGRGCV 197
RNL+D G ++ P +G V
Sbjct: 282 RNLSDIGTIMRVVELSPLKGSV 303
>pdb|4ER3|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Epz004777
Length = 352
Score = 246 bits (627), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 118/202 (58%), Positives = 145/202 (71%), Gaps = 6/202 (2%)
Query: 2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXX 61
PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I T DD+F
Sbjct: 103 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 162
Query: 62 XXXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
T CK +GVEKAD+PAKYAE M F++WM+WYGK+H E+ L +G
Sbjct: 163 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 222
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
DFL+EE RE+I S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI
Sbjct: 223 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 282
Query: 181 RNLTDGGK-----KVPPGRGCV 197
RNL+D G ++ P +G V
Sbjct: 283 RNLSDIGTIMRVVELSPLKGSV 304
>pdb|1U2Z|A Chain A, Crystal Structure Of Histone K79 Methyltransferase Dot1p
From Yeast
pdb|1U2Z|B Chain B, Crystal Structure Of Histone K79 Methyltransferase Dot1p
From Yeast
pdb|1U2Z|C Chain C, Crystal Structure Of Histone K79 Methyltransferase Dot1p
From Yeast
Length = 433
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 4/184 (2%)
Query: 4 RGLLRHIIQQTYNQSVT-EPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFXXX 62
R + + Y +S+ + KL Y+ FS +VYGE + +S + Q D F
Sbjct: 190 RSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDL 249
Query: 63 XXXXXXXXXXXXXXTGCKICWGVEKADLPAKYAEM-HTVFKRWMQWYGKR--HGEFRLVK 119
GC + +G E D + + + K+ + YG R + EF L K
Sbjct: 250 GSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309
Query: 120 GDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRIT 179
E I Q ++ VNNF F ++ +++ Q K G +I+S KS L ++I
Sbjct: 310 SFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLTYQIN 369
Query: 180 DRNL 183
N+
Sbjct: 370 FYNV 373
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,463,082
Number of Sequences: 62578
Number of extensions: 277130
Number of successful extensions: 630
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 9
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)