Query psy17227
Match_columns 268
No_of_seqs 241 out of 2050
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 16:35:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08123 DOT1: Histone methyla 99.9 4.5E-27 9.8E-32 197.5 14.7 172 15-186 1-175 (205)
2 COG2226 UbiE Methylase involve 99.9 9.4E-25 2E-29 186.4 15.1 151 8-173 10-160 (238)
3 PF01209 Ubie_methyltran: ubiE 99.9 5.1E-23 1.1E-27 176.8 9.0 151 9-174 7-158 (233)
4 PLN02233 ubiquinone biosynthes 99.8 2.7E-20 5.7E-25 162.9 16.1 150 8-171 32-184 (261)
5 COG2230 Cfa Cyclopropane fatty 99.8 2.9E-20 6.2E-25 161.7 13.9 188 41-252 58-248 (283)
6 KOG1540|consensus 99.8 3.2E-20 6.9E-25 156.7 13.2 150 5-168 56-213 (296)
7 PF02353 CMAS: Mycolic acid cy 99.8 3.4E-21 7.4E-26 169.0 7.4 191 43-258 50-247 (273)
8 PTZ00098 phosphoethanolamine N 99.8 3.5E-19 7.5E-24 156.0 15.2 199 41-261 38-239 (263)
9 PLN02244 tocopherol O-methyltr 99.8 6.9E-19 1.5E-23 159.5 14.6 157 2-169 52-223 (340)
10 TIGR02752 MenG_heptapren 2-hep 99.8 2.3E-18 5E-23 147.7 16.0 147 8-170 4-152 (231)
11 PF08241 Methyltransf_11: Meth 99.7 5.9E-18 1.3E-22 124.1 7.9 94 60-167 1-95 (95)
12 PRK14103 trans-aconitate 2-met 99.7 1.2E-17 2.6E-22 145.6 10.5 108 43-168 17-125 (255)
13 PRK05785 hypothetical protein; 99.7 1.5E-17 3.3E-22 142.5 10.8 133 8-163 8-141 (226)
14 PF12847 Methyltransf_18: Meth 99.7 4.8E-17 1E-21 123.6 10.2 104 55-168 1-110 (112)
15 PRK10258 biotin biosynthesis p 99.7 3.9E-17 8.4E-22 141.9 10.3 133 8-168 6-139 (251)
16 PF13847 Methyltransf_31: Meth 99.7 1.8E-16 3.8E-21 127.5 11.4 104 54-168 2-109 (152)
17 PRK01683 trans-aconitate 2-met 99.7 1.4E-16 3.1E-21 138.9 11.2 110 43-168 19-129 (258)
18 PLN02336 phosphoethanolamine N 99.7 3.9E-16 8.4E-21 147.6 14.1 116 43-170 254-370 (475)
19 PRK11705 cyclopropane fatty ac 99.7 6.3E-16 1.4E-20 142.0 14.6 185 43-259 155-343 (383)
20 PRK15068 tRNA mo(5)U34 methylt 99.7 4.3E-16 9.2E-21 140.1 12.3 113 45-168 112-225 (322)
21 PRK11036 putative S-adenosyl-L 99.7 2.6E-16 5.7E-21 137.2 10.1 114 43-168 33-148 (255)
22 PLN02490 MPBQ/MSBQ methyltrans 99.7 5.3E-16 1.2E-20 139.6 11.6 116 43-171 100-217 (340)
23 PLN02396 hexaprenyldihydroxybe 99.7 4.3E-16 9.4E-21 139.6 9.9 105 54-168 130-234 (322)
24 KOG3924|consensus 99.7 3.2E-16 6.9E-21 139.9 8.7 170 4-173 140-312 (419)
25 PRK11873 arsM arsenite S-adeno 99.6 1.8E-15 3.9E-20 133.0 12.9 112 50-171 72-185 (272)
26 PRK11207 tellurite resistance 99.6 2.2E-15 4.8E-20 126.5 12.3 110 46-168 21-133 (197)
27 TIGR00452 methyltransferase, p 99.6 2.2E-15 4.8E-20 134.6 12.2 112 46-168 112-224 (314)
28 PRK15451 tRNA cmo(5)U34 methyl 99.6 3.9E-15 8.4E-20 129.3 12.8 110 53-173 54-168 (247)
29 PRK00107 gidB 16S rRNA methylt 99.6 7.4E-15 1.6E-19 122.1 13.0 102 53-168 43-144 (187)
30 PRK08317 hypothetical protein; 99.6 7.9E-15 1.7E-19 125.4 13.2 114 45-169 9-124 (241)
31 TIGR02469 CbiT precorrin-6Y C5 99.6 2.1E-14 4.7E-19 110.5 14.2 113 44-168 8-121 (124)
32 TIGR00740 methyltransferase, p 99.6 7.7E-15 1.7E-19 126.7 12.4 111 53-174 51-166 (239)
33 TIGR00138 gidB 16S rRNA methyl 99.6 1E-14 2.2E-19 120.9 11.8 100 55-168 42-141 (181)
34 PRK00216 ubiE ubiquinone/menaq 99.6 2.9E-14 6.3E-19 122.2 14.8 146 10-170 12-159 (239)
35 COG4106 Tam Trans-aconitate me 99.6 2.5E-15 5.5E-20 124.3 7.6 109 44-168 19-128 (257)
36 TIGR00477 tehB tellurite resis 99.6 1.7E-14 3.7E-19 120.9 12.2 110 45-168 20-132 (195)
37 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 3.1E-14 6.7E-19 120.8 12.6 140 12-169 2-143 (223)
38 TIGR02716 C20_methyl_CrtF C-20 99.6 1.8E-14 3.9E-19 128.9 11.6 115 45-171 139-256 (306)
39 smart00828 PKS_MT Methyltransf 99.6 1.6E-14 3.5E-19 123.2 10.7 104 57-170 1-105 (224)
40 PRK06922 hypothetical protein; 99.6 1.3E-14 2.9E-19 138.5 10.6 113 50-173 413-541 (677)
41 PRK13944 protein-L-isoaspartat 99.6 7.5E-14 1.6E-18 117.9 13.5 114 41-168 58-172 (205)
42 COG2227 UbiG 2-polyprenyl-3-me 99.6 8.2E-15 1.8E-19 123.8 7.1 102 54-168 58-160 (243)
43 PRK13942 protein-L-isoaspartat 99.5 1.3E-13 2.7E-18 117.1 13.5 115 39-168 60-175 (212)
44 PRK11088 rrmA 23S rRNA methylt 99.5 3.6E-14 7.7E-19 124.9 10.4 94 54-168 84-180 (272)
45 TIGR02072 BioC biotin biosynth 99.5 6.4E-14 1.4E-18 119.9 11.2 110 45-168 21-134 (240)
46 PRK04266 fibrillarin; Provisio 99.5 1.3E-13 2.8E-18 118.0 12.8 107 50-168 67-175 (226)
47 TIGR00080 pimt protein-L-isoas 99.5 2.3E-13 5E-18 115.7 13.5 113 41-168 63-176 (215)
48 COG2242 CobL Precorrin-6B meth 99.5 4.3E-13 9.4E-18 109.6 14.4 117 39-168 17-134 (187)
49 PRK00121 trmB tRNA (guanine-N( 99.5 1.2E-13 2.7E-18 116.3 11.7 111 47-168 33-155 (202)
50 PF08242 Methyltransf_12: Meth 99.5 9.6E-15 2.1E-19 108.8 4.1 97 60-165 1-99 (99)
51 PF13649 Methyltransf_25: Meth 99.5 2E-14 4.4E-19 107.6 5.8 94 59-163 1-101 (101)
52 PRK08287 cobalt-precorrin-6Y C 99.5 5.1E-13 1.1E-17 111.1 14.8 116 39-168 14-130 (187)
53 KOG1270|consensus 99.5 1.4E-14 3.1E-19 123.3 4.6 101 56-168 90-194 (282)
54 TIGR03438 probable methyltrans 99.5 3E-13 6.5E-18 120.7 13.0 152 2-168 18-176 (301)
55 TIGR00091 tRNA (guanine-N(7)-) 99.5 1.5E-13 3.3E-18 115.0 10.5 104 55-168 16-131 (194)
56 PRK07402 precorrin-6B methylas 99.5 5.8E-13 1.3E-17 111.6 13.9 117 39-168 23-141 (196)
57 PRK00377 cbiT cobalt-precorrin 99.5 7.7E-13 1.7E-17 111.1 14.3 119 39-168 23-144 (198)
58 PF13489 Methyltransf_23: Meth 99.5 5.2E-14 1.1E-18 113.2 6.5 97 53-171 20-117 (161)
59 PRK12335 tellurite resistance 99.5 3.1E-13 6.7E-18 119.9 11.9 106 49-168 114-222 (287)
60 TIGR03587 Pse_Me-ase pseudamin 99.5 2.9E-13 6.3E-18 114.2 10.9 103 53-173 41-146 (204)
61 PLN03075 nicotianamine synthas 99.5 9.2E-13 2E-17 116.1 14.0 115 46-168 114-232 (296)
62 PRK11188 rrmJ 23S rRNA methylt 99.5 5.6E-13 1.2E-17 112.9 12.1 103 45-168 40-164 (209)
63 PTZ00146 fibrillarin; Provisio 99.5 6.5E-13 1.4E-17 116.6 12.1 108 49-168 126-236 (293)
64 TIGR00537 hemK_rel_arch HemK-r 99.5 7.4E-13 1.6E-17 109.4 11.4 108 46-168 10-139 (179)
65 PF05175 MTS: Methyltransferas 99.4 9.6E-13 2.1E-17 107.9 11.6 114 44-168 20-139 (170)
66 smart00138 MeTrc Methyltransfe 99.4 4.9E-13 1.1E-17 117.2 10.4 119 48-168 92-241 (264)
67 PLN02336 phosphoethanolamine N 99.4 4.5E-13 9.7E-18 126.8 10.8 113 45-171 27-144 (475)
68 PRK15001 SAM-dependent 23S rib 99.4 1.6E-12 3.4E-17 118.8 13.7 117 43-168 216-339 (378)
69 PRK14121 tRNA (guanine-N(7)-)- 99.4 1.4E-12 3.1E-17 118.8 12.8 114 45-168 112-234 (390)
70 TIGR03840 TMPT_Se_Te thiopurin 99.4 9.7E-13 2.1E-17 111.7 10.8 123 42-167 21-150 (213)
71 TIGR01177 conserved hypothetic 99.4 2.9E-12 6.2E-17 115.8 13.5 118 39-168 166-293 (329)
72 PRK14967 putative methyltransf 99.4 2.6E-12 5.6E-17 109.9 12.5 113 43-168 24-158 (223)
73 PF03848 TehB: Tellurite resis 99.4 2.5E-12 5.3E-17 106.8 11.4 109 46-168 21-132 (192)
74 KOG4300|consensus 99.4 1.3E-12 2.8E-17 107.6 9.4 105 57-172 78-185 (252)
75 PRK00312 pcm protein-L-isoaspa 99.4 7.6E-12 1.6E-16 106.1 14.3 112 40-168 63-174 (212)
76 TIGR02021 BchM-ChlM magnesium 99.4 3.6E-12 7.7E-17 108.6 12.1 111 44-168 42-157 (219)
77 PF13659 Methyltransf_26: Meth 99.4 7.8E-13 1.7E-17 101.1 7.1 103 56-168 1-114 (117)
78 KOG1271|consensus 99.4 3.1E-12 6.7E-17 103.5 10.4 147 7-168 17-180 (227)
79 PRK09489 rsmC 16S ribosomal RN 99.4 6.8E-12 1.5E-16 113.7 12.9 112 44-168 185-302 (342)
80 COG4123 Predicted O-methyltran 99.4 3.1E-12 6.7E-17 109.7 9.9 115 47-168 36-169 (248)
81 PRK14968 putative methyltransf 99.4 1.1E-11 2.3E-16 102.5 12.6 113 45-168 13-147 (188)
82 PRK00517 prmA ribosomal protei 99.4 5.8E-12 1.3E-16 109.6 11.3 96 53-168 117-212 (250)
83 TIGR00406 prmA ribosomal prote 99.4 1E-11 2.2E-16 110.3 12.8 107 47-168 152-258 (288)
84 PRK13943 protein-L-isoaspartat 99.4 1.2E-11 2.6E-16 111.0 13.3 113 41-168 66-179 (322)
85 PRK13255 thiopurine S-methyltr 99.3 1E-11 2.2E-16 105.8 11.7 122 42-166 24-152 (218)
86 TIGR03534 RF_mod_PrmC protein- 99.3 2E-11 4.4E-16 105.6 13.7 116 41-168 74-216 (251)
87 PF01135 PCMT: Protein-L-isoas 99.3 4.7E-12 1E-16 107.0 9.4 115 39-168 56-171 (209)
88 TIGR00438 rrmJ cell division p 99.3 1.3E-11 2.7E-16 102.8 11.8 102 46-168 22-145 (188)
89 PRK06202 hypothetical protein; 99.3 9.9E-12 2.1E-16 106.8 11.4 102 52-168 57-165 (232)
90 PF07021 MetW: Methionine bios 99.3 1.5E-12 3.2E-17 107.1 5.7 96 53-168 11-108 (193)
91 PF08003 Methyltransf_9: Prote 99.3 1.8E-11 3.9E-16 107.2 12.4 114 44-168 104-218 (315)
92 TIGR03533 L3_gln_methyl protei 99.3 2.9E-11 6.3E-16 107.1 14.0 116 43-168 108-250 (284)
93 TIGR02081 metW methionine bios 99.3 6.3E-12 1.4E-16 105.1 9.3 99 44-162 4-105 (194)
94 PRK10901 16S rRNA methyltransf 99.3 3.2E-11 6.8E-16 112.7 14.7 114 44-168 233-371 (427)
95 TIGR00563 rsmB ribosomal RNA s 99.3 2.8E-11 6.1E-16 113.1 13.9 120 42-168 225-367 (426)
96 smart00650 rADc Ribosomal RNA 99.3 2.6E-11 5.6E-16 99.3 11.8 109 44-168 2-112 (169)
97 COG2518 Pcm Protein-L-isoaspar 99.3 4.4E-11 9.5E-16 99.8 12.9 109 41-168 58-168 (209)
98 PRK05134 bifunctional 3-demeth 99.3 2.6E-11 5.6E-16 104.1 11.9 113 43-168 36-150 (233)
99 TIGR03704 PrmC_rel_meth putati 99.3 4.1E-11 8.8E-16 104.3 13.0 114 44-168 74-215 (251)
100 PF06325 PrmA: Ribosomal prote 99.3 1.2E-11 2.6E-16 109.5 9.4 106 46-168 153-258 (295)
101 COG2264 PrmA Ribosomal protein 99.3 1.6E-11 3.5E-16 108.0 9.9 109 46-168 154-262 (300)
102 PRK09328 N5-glutamine S-adenos 99.3 6.3E-11 1.4E-15 104.1 13.8 116 42-168 95-237 (275)
103 TIGR00536 hemK_fam HemK family 99.3 7.1E-11 1.5E-15 104.6 13.9 118 41-168 99-243 (284)
104 PRK14966 unknown domain/N5-glu 99.3 5.4E-11 1.2E-15 109.3 13.3 106 53-168 249-380 (423)
105 PRK14902 16S rRNA methyltransf 99.3 5.6E-11 1.2E-15 111.6 13.8 114 46-168 241-378 (444)
106 PRK11805 N5-glutamine S-adenos 99.3 7.2E-11 1.6E-15 105.6 13.4 103 56-168 134-262 (307)
107 TIGR00446 nop2p NOL1/NOP2/sun 99.3 5.9E-11 1.3E-15 104.1 11.8 111 48-168 64-198 (264)
108 PF05401 NodS: Nodulation prot 99.2 1.8E-11 3.9E-16 101.0 7.6 104 50-168 38-145 (201)
109 COG2519 GCD14 tRNA(1-methylade 99.2 1.2E-10 2.6E-15 99.4 12.8 121 37-171 76-197 (256)
110 PLN02585 magnesium protoporphy 99.2 1.1E-10 2.4E-15 104.6 13.1 114 43-167 129-248 (315)
111 cd02440 AdoMet_MTases S-adenos 99.2 6.5E-11 1.4E-15 86.6 9.3 101 58-168 1-103 (107)
112 TIGR01983 UbiG ubiquinone bios 99.2 1E-10 2.2E-15 99.6 11.5 103 55-168 45-148 (224)
113 PRK14901 16S rRNA methyltransf 99.2 2.1E-10 4.6E-15 107.4 14.1 113 46-168 243-383 (434)
114 PRK07580 Mg-protoporphyrin IX 99.2 1.8E-10 3.9E-15 98.4 12.5 98 53-164 61-161 (230)
115 PRK14904 16S rRNA methyltransf 99.2 2.1E-10 4.6E-15 107.7 13.7 112 46-168 241-376 (445)
116 PRK14903 16S rRNA methyltransf 99.2 2.8E-10 6.1E-15 106.3 13.7 112 47-168 229-365 (431)
117 PF08704 GCD14: tRNA methyltra 99.2 2.1E-10 4.6E-15 99.1 11.7 123 35-168 20-145 (247)
118 KOG1269|consensus 99.2 7.5E-11 1.6E-15 107.1 8.2 113 50-171 105-217 (364)
119 PRK04457 spermidine synthase; 99.2 2E-10 4.4E-15 100.5 10.3 108 53-168 64-176 (262)
120 KOG1541|consensus 99.2 1.2E-10 2.6E-15 97.0 8.1 111 42-168 35-159 (270)
121 COG2813 RsmC 16S RNA G1207 met 99.1 4.3E-10 9.3E-15 98.6 11.6 114 43-168 146-265 (300)
122 PRK13256 thiopurine S-methyltr 99.1 6.7E-10 1.4E-14 94.7 12.3 124 42-168 30-162 (226)
123 PHA03411 putative methyltransf 99.1 3.7E-10 8E-15 98.4 10.9 101 52-168 61-182 (279)
124 PRK15128 23S rRNA m(5)C1962 me 99.1 2.9E-10 6.3E-15 104.9 10.8 108 54-168 219-338 (396)
125 PRK00811 spermidine synthase; 99.1 3.5E-10 7.7E-15 100.1 10.5 110 54-168 75-190 (283)
126 PF00891 Methyltransf_2: O-met 99.1 3.1E-10 6.8E-15 98.0 9.7 109 46-174 91-204 (241)
127 PLN02781 Probable caffeoyl-CoA 99.1 5.6E-10 1.2E-14 96.2 11.2 109 51-168 64-177 (234)
128 PLN02232 ubiquinone biosynthes 99.1 1.2E-10 2.6E-15 94.6 6.6 82 83-171 1-83 (160)
129 KOG2899|consensus 99.1 3.5E-10 7.5E-15 95.5 9.1 110 53-168 56-208 (288)
130 KOG3010|consensus 99.1 1.5E-10 3.2E-15 97.8 6.7 99 58-167 36-134 (261)
131 PRK01544 bifunctional N5-gluta 99.1 8.8E-10 1.9E-14 104.9 12.7 104 55-168 138-268 (506)
132 PRK00274 ksgA 16S ribosomal RN 99.1 7.1E-10 1.5E-14 97.7 10.9 91 39-144 26-116 (272)
133 COG2890 HemK Methylase of poly 99.1 1.5E-09 3.3E-14 95.8 12.8 99 58-168 113-237 (280)
134 PF03291 Pox_MCEL: mRNA cappin 99.1 5.1E-10 1.1E-14 100.9 9.6 111 55-168 62-185 (331)
135 PF05724 TPMT: Thiopurine S-me 99.1 4.5E-10 9.8E-15 95.6 8.6 122 42-166 24-152 (218)
136 PRK10909 rsmD 16S rRNA m(2)G96 99.1 1.9E-09 4E-14 90.6 12.2 121 38-168 35-158 (199)
137 PLN02366 spermidine synthase 99.1 9.1E-10 2E-14 98.4 10.7 120 45-168 78-205 (308)
138 KOG1975|consensus 99.1 8E-10 1.7E-14 96.9 9.9 115 50-170 112-238 (389)
139 PF02390 Methyltransf_4: Putat 99.1 8.1E-10 1.7E-14 92.6 9.4 101 58-168 20-132 (195)
140 PRK14896 ksgA 16S ribosomal RN 99.0 1.5E-09 3.2E-14 94.9 10.8 90 40-145 14-103 (258)
141 KOG1499|consensus 99.0 7.4E-10 1.6E-14 98.4 8.6 104 52-166 57-164 (346)
142 PRK11783 rlmL 23S rRNA m(2)G24 99.0 9.3E-10 2E-14 108.7 10.0 107 54-168 537-655 (702)
143 COG2263 Predicted RNA methylas 99.0 2.6E-09 5.6E-14 87.4 10.7 78 50-142 40-117 (198)
144 PRK13168 rumA 23S rRNA m(5)U19 99.0 3E-09 6.6E-14 99.9 12.6 110 44-168 286-399 (443)
145 COG4976 Predicted methyltransf 99.0 1.2E-10 2.7E-15 97.5 2.1 115 39-168 109-224 (287)
146 PHA03412 putative methyltransf 99.0 2.9E-09 6.3E-14 90.9 10.4 94 55-164 49-158 (241)
147 COG1041 Predicted DNA modifica 99.0 5.2E-09 1.1E-13 93.5 11.4 122 37-170 179-311 (347)
148 PRK01581 speE spermidine synth 99.0 1.7E-09 3.7E-14 97.7 8.2 113 54-168 149-267 (374)
149 PRK03522 rumB 23S rRNA methylu 99.0 4.9E-09 1.1E-13 94.2 11.0 108 48-168 166-273 (315)
150 PF05148 Methyltransf_8: Hypot 99.0 4.7E-10 1E-14 93.3 3.7 98 43-168 59-157 (219)
151 KOG2361|consensus 98.9 1.7E-09 3.6E-14 91.4 6.5 102 58-168 74-182 (264)
152 TIGR00417 speE spermidine synt 98.9 8.2E-09 1.8E-13 90.8 10.7 109 54-168 71-185 (270)
153 TIGR00755 ksgA dimethyladenosi 98.9 1.6E-08 3.4E-13 88.2 12.3 91 40-144 14-105 (253)
154 KOG1500|consensus 98.9 7.4E-09 1.6E-13 91.3 9.7 110 47-168 169-281 (517)
155 TIGR00095 RNA methyltransferas 98.9 2.4E-08 5.2E-13 83.3 12.3 115 46-168 39-158 (189)
156 PTZ00338 dimethyladenosine tra 98.9 9.7E-09 2.1E-13 91.3 10.3 93 41-146 22-114 (294)
157 PRK03612 spermidine synthase; 98.9 4.2E-09 9E-14 100.8 8.4 113 54-168 296-414 (521)
158 PLN02672 methionine S-methyltr 98.9 9.7E-09 2.1E-13 104.3 11.3 84 56-142 119-212 (1082)
159 PF05185 PRMT5: PRMT5 arginine 98.9 9.6E-09 2.1E-13 96.2 10.4 101 56-166 187-294 (448)
160 KOG1661|consensus 98.9 5.3E-09 1.2E-13 86.7 7.6 116 44-168 69-192 (237)
161 KOG3045|consensus 98.9 6.9E-09 1.5E-13 88.5 8.2 95 44-168 168-263 (325)
162 PF05219 DREV: DREV methyltran 98.9 2.4E-08 5.2E-13 85.8 11.3 109 39-168 73-187 (265)
163 TIGR00478 tly hemolysin TlyA f 98.9 2.9E-08 6.4E-13 84.9 11.9 104 43-168 62-170 (228)
164 PF02384 N6_Mtase: N-6 DNA Met 98.9 1.7E-08 3.7E-13 90.4 10.7 149 8-168 3-182 (311)
165 PLN02476 O-methyltransferase 98.9 2.5E-08 5.5E-13 87.5 11.3 109 51-168 114-227 (278)
166 TIGR00479 rumA 23S rRNA (uraci 98.8 2.1E-08 4.5E-13 93.9 11.0 112 45-168 282-395 (431)
167 COG0220 Predicted S-adenosylme 98.8 3.2E-08 7E-13 84.5 11.2 104 56-168 49-163 (227)
168 PF01596 Methyltransf_3: O-met 98.8 1.2E-08 2.6E-13 86.0 8.4 107 53-168 43-154 (205)
169 COG4122 Predicted O-methyltran 98.8 3E-08 6.5E-13 83.9 10.3 109 51-168 55-165 (219)
170 PF01170 UPF0020: Putative RNA 98.8 1.8E-07 3.8E-12 77.4 14.0 123 37-168 10-150 (179)
171 TIGR02085 meth_trns_rumB 23S r 98.8 3.5E-08 7.7E-13 90.7 10.6 107 49-168 227-333 (374)
172 PRK04338 N(2),N(2)-dimethylgua 98.8 5.8E-08 1.3E-12 89.3 10.5 110 46-168 47-157 (382)
173 KOG1331|consensus 98.7 1.4E-08 3E-13 88.0 5.5 130 6-168 9-142 (293)
174 PF03602 Cons_hypoth95: Conser 98.7 5E-08 1.1E-12 80.9 8.2 123 38-168 23-152 (183)
175 PRK04148 hypothetical protein; 98.7 1.4E-07 2.9E-12 73.9 9.9 101 46-168 7-108 (134)
176 PF06080 DUF938: Protein of un 98.7 1.6E-07 3.4E-12 78.5 10.8 125 43-174 13-146 (204)
177 KOG2904|consensus 98.7 2.9E-07 6.4E-12 79.3 11.5 97 39-142 129-231 (328)
178 COG2521 Predicted archaeal met 98.6 6.5E-08 1.4E-12 81.6 6.4 113 47-168 126-244 (287)
179 PRK01544 bifunctional N5-gluta 98.6 1.6E-07 3.4E-12 89.6 9.6 104 55-168 347-461 (506)
180 COG0030 KsgA Dimethyladenosine 98.6 2.3E-07 5E-12 80.4 9.4 91 41-144 16-106 (259)
181 PF02475 Met_10: Met-10+ like- 98.6 1.9E-07 4.2E-12 78.3 8.6 105 46-165 94-198 (200)
182 PLN02589 caffeoyl-CoA O-methyl 98.6 4.1E-07 8.9E-12 78.8 10.4 108 52-168 76-189 (247)
183 COG1092 Predicted SAM-dependen 98.6 2E-07 4.3E-12 85.5 8.4 107 55-168 217-335 (393)
184 PRK00050 16S rRNA m(4)C1402 me 98.6 2E-07 4.3E-12 82.7 8.1 88 43-140 7-97 (296)
185 PF02527 GidB: rRNA small subu 98.6 4.7E-07 1E-11 75.1 9.7 97 58-168 51-147 (184)
186 PF01728 FtsJ: FtsJ-like methy 98.6 6.7E-08 1.5E-12 79.8 4.7 107 43-168 8-138 (181)
187 PF12147 Methyltransf_20: Puta 98.5 1.4E-06 3.1E-11 76.0 12.3 114 54-174 134-255 (311)
188 KOG3420|consensus 98.5 1E-07 2.2E-12 74.7 4.6 84 47-142 40-123 (185)
189 PRK11933 yebU rRNA (cytosine-C 98.5 1.5E-06 3.2E-11 82.0 12.7 111 48-168 104-241 (470)
190 TIGR02143 trmA_only tRNA (urac 98.5 1.1E-06 2.3E-11 80.4 10.9 70 45-125 188-257 (353)
191 KOG2940|consensus 98.5 1.7E-07 3.6E-12 78.9 4.8 110 46-168 61-173 (325)
192 PRK11727 23S rRNA mA1618 methy 98.5 1.7E-06 3.7E-11 77.6 11.4 86 55-147 114-203 (321)
193 PF10294 Methyltransf_16: Puta 98.5 1.6E-06 3.5E-11 71.2 10.2 110 52-168 42-155 (173)
194 TIGR03439 methyl_EasF probable 98.5 2E-06 4.3E-11 77.2 11.3 150 2-168 31-196 (319)
195 COG0357 GidB Predicted S-adeno 98.4 1.9E-06 4.1E-11 72.8 10.1 100 56-168 68-167 (215)
196 PLN02823 spermine synthase 98.4 1.1E-06 2.3E-11 79.6 9.1 109 55-168 103-219 (336)
197 COG0742 N6-adenine-specific me 98.4 1E-05 2.2E-10 66.8 13.5 125 36-168 22-153 (187)
198 PRK11783 rlmL 23S rRNA m(2)G24 98.4 6.3E-06 1.4E-10 81.7 14.5 123 39-168 173-346 (702)
199 COG0500 SmtA SAM-dependent met 98.4 5.2E-06 1.1E-10 64.0 10.8 101 59-169 52-155 (257)
200 PRK05031 tRNA (uracil-5-)-meth 98.4 3.1E-06 6.7E-11 77.6 10.5 107 47-168 199-319 (362)
201 PF09445 Methyltransf_15: RNA 98.3 6.5E-07 1.4E-11 72.5 5.0 75 57-140 1-76 (163)
202 PF01269 Fibrillarin: Fibrilla 98.3 7.6E-06 1.6E-10 69.0 11.0 108 49-168 67-177 (229)
203 KOG2915|consensus 98.3 8.3E-06 1.8E-10 70.4 11.3 115 42-167 92-208 (314)
204 KOG0820|consensus 98.3 4.1E-06 8.9E-11 72.3 9.4 87 41-141 44-131 (315)
205 COG0293 FtsJ 23S rRNA methylas 98.3 9.9E-06 2.1E-10 67.8 11.4 105 45-168 34-158 (205)
206 PF10672 Methyltrans_SAM: S-ad 98.3 1.8E-06 3.8E-11 76.3 7.2 116 44-168 114-237 (286)
207 COG3963 Phospholipid N-methylt 98.3 8.5E-06 1.8E-10 65.6 10.0 115 41-168 34-155 (194)
208 KOG3178|consensus 98.3 5.9E-06 1.3E-10 73.9 10.0 100 56-174 178-280 (342)
209 COG4076 Predicted RNA methylas 98.3 9.8E-07 2.1E-11 72.2 4.4 96 57-166 34-132 (252)
210 TIGR00308 TRM1 tRNA(guanine-26 98.3 6.9E-06 1.5E-10 75.4 10.3 101 56-168 45-146 (374)
211 COG2265 TrmA SAM-dependent met 98.2 7E-06 1.5E-10 76.6 9.5 113 44-168 282-395 (432)
212 COG2520 Predicted methyltransf 98.2 8E-06 1.7E-10 73.6 9.5 108 46-168 181-288 (341)
213 PF00398 RrnaAD: Ribosomal RNA 98.2 1E-05 2.2E-10 70.9 9.9 104 40-157 15-119 (262)
214 PRK10611 chemotaxis methyltran 98.2 8.6E-06 1.9E-10 72.1 8.6 112 56-168 116-261 (287)
215 KOG4058|consensus 98.2 1.5E-05 3.2E-10 62.9 8.7 123 26-168 48-171 (199)
216 COG0421 SpeE Spermidine syntha 98.1 1.5E-05 3.2E-10 70.4 8.8 107 57-168 78-189 (282)
217 PRK11760 putative 23S rRNA C24 98.1 2.7E-05 5.9E-10 69.9 10.2 94 53-168 209-304 (357)
218 PF03141 Methyltransf_29: Puta 98.1 4.7E-06 1E-10 77.7 5.3 95 57-170 119-220 (506)
219 COG0116 Predicted N6-adenine-s 98.1 7E-05 1.5E-09 68.2 12.6 121 39-168 175-343 (381)
220 PF05891 Methyltransf_PK: AdoM 98.1 9.2E-06 2E-10 68.4 6.2 119 45-175 39-167 (218)
221 PF01564 Spermine_synth: Sperm 98.1 9.5E-06 2.1E-10 70.4 6.5 110 54-168 75-190 (246)
222 KOG1663|consensus 98.0 8.9E-05 1.9E-09 62.7 11.7 114 51-173 69-187 (237)
223 PF07942 N2227: N2227-like pro 98.0 2E-05 4.3E-10 69.0 7.9 108 55-166 56-199 (270)
224 COG0144 Sun tRNA and rRNA cyto 98.0 8.9E-05 1.9E-09 67.8 12.6 114 47-168 148-287 (355)
225 PF01739 CheR: CheR methyltran 98.0 2.4E-05 5.2E-10 65.6 7.9 112 55-168 31-174 (196)
226 PF03059 NAS: Nicotianamine sy 98.0 6.9E-05 1.5E-09 65.8 10.9 103 57-168 122-229 (276)
227 PRK00536 speE spermidine synth 97.9 6.8E-05 1.5E-09 65.5 9.9 100 54-168 71-170 (262)
228 PF13679 Methyltransf_32: Meth 97.9 3.3E-05 7.2E-10 61.2 7.4 102 52-167 22-129 (141)
229 PF05958 tRNA_U5-meth_tr: tRNA 97.9 1.1E-05 2.4E-10 73.7 4.9 71 44-125 186-256 (352)
230 PF13578 Methyltransf_24: Meth 97.9 7.2E-06 1.6E-10 61.5 2.7 99 60-168 1-104 (106)
231 TIGR02987 met_A_Alw26 type II 97.8 0.00012 2.7E-09 70.3 10.6 80 55-142 31-121 (524)
232 KOG2187|consensus 97.8 1.9E-05 4.2E-10 73.7 3.7 69 47-125 375-443 (534)
233 COG1189 Predicted rRNA methyla 97.8 0.00039 8.5E-09 59.2 11.3 109 44-168 67-177 (245)
234 KOG3115|consensus 97.8 3.9E-05 8.5E-10 63.6 5.0 108 56-168 61-182 (249)
235 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.00016 3.4E-09 64.1 9.2 114 47-168 77-218 (283)
236 COG1352 CheR Methylase of chem 97.7 0.0003 6.6E-09 61.6 10.6 112 55-168 96-240 (268)
237 TIGR01444 fkbM_fam methyltrans 97.7 9.4E-05 2E-09 58.2 6.6 59 58-124 1-59 (143)
238 COG1889 NOP1 Fibrillarin-like 97.7 0.0006 1.3E-08 56.7 11.1 108 49-168 70-179 (231)
239 PF09243 Rsm22: Mitochondrial 97.7 0.00035 7.6E-09 61.6 9.7 52 45-96 23-75 (274)
240 PF11968 DUF3321: Putative met 97.7 0.00032 7E-09 59.1 8.9 82 57-164 53-139 (219)
241 KOG3987|consensus 97.6 4.8E-05 1.1E-09 63.3 3.5 109 39-168 93-206 (288)
242 KOG2730|consensus 97.6 1.9E-05 4.2E-10 66.2 1.1 63 55-126 94-156 (263)
243 COG4798 Predicted methyltransf 97.6 0.00012 2.6E-09 60.5 5.6 118 46-172 39-169 (238)
244 KOG3191|consensus 97.6 0.00069 1.5E-08 55.4 9.9 88 43-142 31-119 (209)
245 COG0286 HsdM Type I restrictio 97.6 0.00062 1.3E-08 64.9 11.2 147 9-168 144-325 (489)
246 KOG4589|consensus 97.6 0.00041 8.9E-09 57.0 8.0 97 53-168 67-183 (232)
247 COG3897 Predicted methyltransf 97.6 0.00025 5.5E-09 58.6 6.8 106 52-172 76-182 (218)
248 TIGR00006 S-adenosyl-methyltra 97.5 0.00058 1.3E-08 60.9 8.8 89 43-140 8-99 (305)
249 PRK10742 putative methyltransf 97.5 0.0005 1.1E-08 59.3 7.7 93 46-143 77-174 (250)
250 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.4 0.00014 3E-09 63.3 4.0 113 53-168 54-198 (256)
251 COG4262 Predicted spermidine s 97.3 0.0013 2.8E-08 59.4 9.0 121 53-176 287-417 (508)
252 KOG2352|consensus 97.3 0.00094 2E-08 62.4 7.9 104 53-168 45-160 (482)
253 PF04989 CmcI: Cephalosporin h 97.2 0.0029 6.3E-08 53.1 9.4 107 54-170 32-148 (206)
254 PF04672 Methyltransf_19: S-ad 97.2 0.0033 7.3E-08 54.8 9.8 118 43-168 55-189 (267)
255 PF04816 DUF633: Family of unk 97.1 0.0035 7.6E-08 52.9 8.9 99 59-168 1-100 (205)
256 PF04445 SAM_MT: Putative SAM- 97.1 0.0012 2.5E-08 56.6 5.7 89 47-142 65-160 (234)
257 KOG1709|consensus 97.0 0.004 8.7E-08 52.4 8.5 108 54-173 100-210 (271)
258 COG1064 AdhP Zn-dependent alco 96.8 0.0077 1.7E-07 54.5 9.3 100 47-168 158-258 (339)
259 KOG1596|consensus 96.6 0.012 2.6E-07 50.4 8.0 108 49-168 150-260 (317)
260 cd08283 FDH_like_1 Glutathione 96.6 0.02 4.4E-07 52.7 10.3 42 49-90 178-220 (386)
261 PF01861 DUF43: Protein of unk 96.3 0.16 3.4E-06 43.7 13.4 135 13-163 4-142 (243)
262 PF07757 AdoMet_MTase: Predict 96.3 0.0067 1.5E-07 45.4 4.3 33 55-89 58-90 (112)
263 PF05971 Methyltransf_10: Prot 96.2 0.041 8.8E-07 49.0 9.8 83 56-146 103-190 (299)
264 KOG1501|consensus 96.0 0.015 3.3E-07 53.7 6.0 100 58-166 69-172 (636)
265 PF01795 Methyltransf_5: MraW 96.0 0.025 5.4E-07 50.6 7.1 89 43-140 8-100 (310)
266 PF01555 N6_N4_Mtase: DNA meth 95.9 0.018 3.8E-07 48.4 5.8 55 38-95 175-229 (231)
267 PRK09424 pntA NAD(P) transhydr 95.7 0.041 8.8E-07 52.7 8.0 38 52-90 161-199 (509)
268 PF06962 rRNA_methylase: Putat 95.7 0.039 8.5E-07 43.5 6.5 81 81-168 1-91 (140)
269 KOG2798|consensus 95.7 0.021 4.5E-07 50.7 5.4 110 56-167 151-294 (369)
270 PF07091 FmrO: Ribosomal RNA m 95.6 0.039 8.5E-07 47.6 6.6 78 53-142 103-180 (251)
271 KOG2198|consensus 95.5 0.12 2.7E-06 46.9 9.6 111 50-168 150-295 (375)
272 PF12692 Methyltransf_17: S-ad 95.4 0.032 7E-07 44.2 5.1 112 44-172 18-137 (160)
273 COG2384 Predicted SAM-dependen 95.3 0.19 4E-06 42.6 9.7 104 54-167 15-118 (226)
274 KOG1122|consensus 95.3 0.18 3.8E-06 46.7 10.1 69 50-126 236-305 (460)
275 PF11599 AviRa: RRNA methyltra 95.2 0.48 1E-05 40.2 11.7 114 54-168 50-213 (246)
276 KOG0822|consensus 95.2 0.074 1.6E-06 50.4 7.5 100 57-166 369-475 (649)
277 KOG2793|consensus 95.1 0.25 5.3E-06 42.9 10.1 108 55-167 86-197 (248)
278 cd00315 Cyt_C5_DNA_methylase C 95.1 0.048 1E-06 48.1 5.9 70 58-142 2-71 (275)
279 COG5459 Predicted rRNA methyla 95.1 0.031 6.8E-07 50.4 4.6 111 55-176 113-232 (484)
280 PHA01634 hypothetical protein 95.1 0.057 1.2E-06 41.8 5.3 35 55-90 28-62 (156)
281 PRK11524 putative methyltransf 94.9 0.074 1.6E-06 47.1 6.5 51 43-96 197-247 (284)
282 PLN02668 indole-3-acetate carb 94.9 0.21 4.5E-06 46.1 9.6 18 56-73 64-81 (386)
283 PRK13699 putative methylase; P 94.8 0.18 3.9E-06 43.2 8.5 52 42-96 151-202 (227)
284 PRK09880 L-idonate 5-dehydroge 94.8 0.24 5.1E-06 44.7 9.7 103 48-168 162-265 (343)
285 COG0275 Predicted S-adenosylme 94.8 0.2 4.4E-06 44.5 8.7 75 43-126 11-86 (314)
286 COG1063 Tdh Threonine dehydrog 94.8 0.25 5.4E-06 45.1 9.7 105 48-168 161-268 (350)
287 TIGR00497 hsdM type I restrict 94.6 0.51 1.1E-05 45.3 11.8 45 55-99 217-265 (501)
288 cd08254 hydroxyacyl_CoA_DH 6-h 94.5 0.34 7.4E-06 43.0 9.8 98 50-168 160-262 (338)
289 KOG2671|consensus 94.4 0.036 7.9E-07 49.9 3.3 113 22-141 173-292 (421)
290 PF02005 TRM: N2,N2-dimethylgu 94.4 0.14 3E-06 47.3 7.1 104 55-168 49-153 (377)
291 KOG2651|consensus 94.4 0.17 3.7E-06 46.2 7.3 45 46-91 143-188 (476)
292 KOG3201|consensus 93.8 0.031 6.8E-07 45.1 1.5 118 46-168 20-139 (201)
293 PF11312 DUF3115: Protein of u 93.8 0.14 3E-06 45.7 5.7 159 11-170 29-243 (315)
294 cd00401 AdoHcyase S-adenosyl-L 93.8 0.52 1.1E-05 44.0 9.7 98 43-168 188-288 (413)
295 TIGR02822 adh_fam_2 zinc-bindi 93.7 0.78 1.7E-05 41.2 10.6 95 48-168 158-253 (329)
296 PF05206 TRM13: Methyltransfer 93.6 0.37 8.1E-06 42.1 8.0 77 43-127 5-87 (259)
297 KOG1562|consensus 93.6 0.32 6.9E-06 43.1 7.4 110 53-168 119-235 (337)
298 COG4301 Uncharacterized conser 93.4 1.2 2.6E-05 38.6 10.3 109 53-168 76-192 (321)
299 PTZ00357 methyltransferase; Pr 93.3 0.36 7.9E-06 47.5 8.0 107 58-164 703-830 (1072)
300 PF02636 Methyltransf_28: Puta 93.2 0.72 1.6E-05 40.0 9.2 50 45-94 7-65 (252)
301 PF02254 TrkA_N: TrkA-N domain 93.1 0.52 1.1E-05 35.3 7.2 88 64-168 4-95 (116)
302 PF05711 TylF: Macrocin-O-meth 93.0 0.36 7.8E-06 41.9 6.8 122 44-168 62-211 (248)
303 cd08230 glucose_DH Glucose deh 92.8 0.71 1.5E-05 41.8 8.9 98 52-168 169-268 (355)
304 cd08237 ribitol-5-phosphate_DH 92.8 0.86 1.9E-05 41.1 9.4 95 51-168 159-255 (341)
305 PRK01747 mnmC bifunctional tRN 92.8 0.42 9.1E-06 47.4 7.9 112 55-168 57-205 (662)
306 TIGR03451 mycoS_dep_FDH mycoth 92.7 1.1 2.3E-05 40.7 10.0 102 48-168 169-275 (358)
307 COG1867 TRM1 N2,N2-dimethylgua 92.7 0.48 1E-05 43.2 7.3 110 47-168 44-153 (380)
308 cd08281 liver_ADH_like1 Zinc-d 92.6 0.89 1.9E-05 41.5 9.4 103 47-168 183-289 (371)
309 cd08232 idonate-5-DH L-idonate 92.6 0.94 2E-05 40.5 9.4 99 49-168 159-261 (339)
310 KOG0024|consensus 92.4 0.24 5.1E-06 44.4 5.0 104 47-168 161-272 (354)
311 COG0604 Qor NADPH:quinone redu 92.3 1.7 3.7E-05 39.2 10.6 103 47-168 134-240 (326)
312 COG1062 AdhC Zn-dependent alco 92.0 1.1 2.4E-05 40.5 8.8 103 45-168 175-284 (366)
313 KOG1099|consensus 91.8 0.5 1.1E-05 40.5 6.0 93 57-168 43-162 (294)
314 TIGR03366 HpnZ_proposed putati 91.5 1.3 2.7E-05 38.8 8.7 100 48-168 113-217 (280)
315 KOG0022|consensus 91.4 0.43 9.2E-06 42.8 5.4 103 46-168 183-293 (375)
316 cd08245 CAD Cinnamyl alcohol d 91.3 2.5 5.4E-05 37.5 10.5 99 49-168 156-255 (330)
317 cd05188 MDR Medium chain reduc 91.1 2 4.4E-05 36.4 9.4 37 53-90 132-169 (271)
318 COG1565 Uncharacterized conser 91.0 0.69 1.5E-05 42.2 6.4 51 43-93 65-123 (370)
319 PLN03154 putative allyl alcoho 90.9 1.7 3.7E-05 39.4 9.2 100 49-168 152-257 (348)
320 COG4627 Uncharacterized protei 90.9 0.033 7.2E-07 44.6 -1.7 53 114-168 30-85 (185)
321 cd08255 2-desacetyl-2-hydroxye 90.7 1.4 3E-05 38.1 8.1 98 49-168 91-189 (277)
322 KOG2920|consensus 90.7 0.21 4.5E-06 43.9 2.8 36 54-90 115-150 (282)
323 PF11899 DUF3419: Protein of u 90.7 0.66 1.4E-05 42.9 6.2 50 45-96 25-74 (380)
324 TIGR00936 ahcY adenosylhomocys 90.7 2.1 4.5E-05 40.0 9.5 98 43-168 181-281 (406)
325 PLN02740 Alcohol dehydrogenase 90.5 2.1 4.6E-05 39.2 9.5 43 48-90 191-234 (381)
326 PF00145 DNA_methylase: C-5 cy 90.2 0.41 8.9E-06 42.5 4.4 68 58-142 2-70 (335)
327 PF00107 ADH_zinc_N: Zinc-bind 90.1 0.53 1.1E-05 35.8 4.4 84 65-168 1-88 (130)
328 KOG0023|consensus 90.0 1.8 4E-05 38.9 8.1 43 47-90 173-216 (360)
329 COG3510 CmcI Cephalosporin hyd 89.9 5 0.00011 33.6 10.0 104 53-171 68-182 (237)
330 COG1255 Uncharacterized protei 89.9 3.5 7.6E-05 31.4 8.3 84 54-161 13-96 (129)
331 cd08239 THR_DH_like L-threonin 89.5 1.6 3.5E-05 39.0 7.8 44 47-90 155-199 (339)
332 PLN02494 adenosylhomocysteinas 89.4 1.8 3.9E-05 41.1 8.1 97 44-168 241-340 (477)
333 TIGR00675 dcm DNA-methyltransf 89.4 0.54 1.2E-05 42.3 4.6 66 59-140 1-66 (315)
334 cd08234 threonine_DH_like L-th 89.3 3.7 8E-05 36.4 9.9 101 49-168 153-256 (334)
335 cd05278 FDH_like Formaldehyde 89.1 3.1 6.7E-05 37.1 9.3 100 50-168 162-266 (347)
336 PRK13699 putative methylase; P 89.0 0.34 7.4E-06 41.5 2.8 19 149-167 52-70 (227)
337 TIGR02825 B4_12hDH leukotriene 88.9 3.6 7.7E-05 36.6 9.5 101 47-168 130-236 (325)
338 PF06859 Bin3: Bicoid-interact 88.9 0.2 4.4E-06 37.7 1.2 35 134-168 2-43 (110)
339 PRK10309 galactitol-1-phosphat 88.8 1.8 3.9E-05 38.9 7.6 42 49-90 154-196 (347)
340 PLN02827 Alcohol dehydrogenase 88.5 3.2 6.9E-05 38.1 9.1 42 49-90 187-229 (378)
341 PRK11524 putative methyltransf 88.5 0.4 8.7E-06 42.4 3.0 54 113-168 7-79 (284)
342 TIGR00561 pntA NAD(P) transhyd 88.5 1.6 3.5E-05 41.9 7.2 97 54-166 162-281 (511)
343 PF03269 DUF268: Caenorhabditi 88.5 0.72 1.6E-05 37.3 4.1 102 56-174 2-116 (177)
344 KOG2360|consensus 88.2 1.1 2.4E-05 41.1 5.6 91 43-141 201-292 (413)
345 cd08294 leukotriene_B4_DH_like 88.1 4.7 0.0001 35.6 9.7 100 48-168 136-240 (329)
346 cd08285 NADP_ADH NADP(H)-depen 87.8 3.6 7.8E-05 37.0 8.9 101 48-168 159-265 (351)
347 cd08295 double_bond_reductase_ 87.6 3.5 7.5E-05 36.9 8.6 100 49-168 145-250 (338)
348 TIGR01202 bchC 2-desacetyl-2-h 87.5 2.1 4.6E-05 38.0 7.1 87 54-168 143-230 (308)
349 KOG0821|consensus 87.4 2.2 4.8E-05 36.4 6.5 73 43-125 38-110 (326)
350 PF03141 Methyltransf_29: Puta 87.0 1.7 3.8E-05 41.2 6.3 97 56-168 366-466 (506)
351 PRK10458 DNA cytosine methylas 86.9 3.7 8E-05 39.1 8.6 60 56-126 88-147 (467)
352 cd08236 sugar_DH NAD(P)-depend 86.8 6.2 0.00013 35.2 9.8 100 49-168 153-257 (343)
353 PRK05476 S-adenosyl-L-homocyst 86.8 4.8 0.0001 37.8 9.1 89 52-168 207-298 (425)
354 PF03686 UPF0146: Uncharacteri 86.4 3 6.6E-05 32.3 6.3 89 55-168 13-101 (127)
355 cd05213 NAD_bind_Glutamyl_tRNA 86.4 12 0.00027 33.4 11.4 78 8-90 131-213 (311)
356 cd08293 PTGR2 Prostaglandin re 86.1 11 0.00024 33.6 11.0 101 49-168 146-253 (345)
357 PRK03659 glutathione-regulated 85.7 2.3 5E-05 41.8 6.8 92 57-168 401-497 (601)
358 cd08261 Zn_ADH7 Alcohol dehydr 85.7 5.4 0.00012 35.5 8.8 100 49-168 153-257 (337)
359 PLN02586 probable cinnamyl alc 85.6 11 0.00023 34.4 10.8 96 52-168 180-277 (360)
360 KOG1098|consensus 85.3 0.94 2E-05 44.0 3.7 37 53-89 42-79 (780)
361 cd08278 benzyl_alcohol_DH Benz 85.1 7.8 0.00017 35.2 9.6 102 48-168 179-284 (365)
362 cd05285 sorbitol_DH Sorbitol d 85.1 8.6 0.00019 34.4 9.8 42 49-90 156-198 (343)
363 TIGR00518 alaDH alanine dehydr 85.1 1.3 2.8E-05 40.8 4.5 35 55-90 166-201 (370)
364 PTZ00075 Adenosylhomocysteinas 84.1 2.7 5.8E-05 40.0 6.1 86 55-168 253-340 (476)
365 cd08277 liver_alcohol_DH_like 83.7 7.6 0.00016 35.3 8.9 43 48-90 177-220 (365)
366 PRK10669 putative cation:proto 82.4 5.9 0.00013 38.5 8.0 92 57-168 418-514 (558)
367 PRK08410 2-hydroxyacid dehydro 82.1 2.6 5.6E-05 37.9 5.0 86 55-168 144-231 (311)
368 COG1568 Predicted methyltransf 81.9 7.3 0.00016 34.5 7.4 141 8-168 108-259 (354)
369 COG5379 BtaA S-adenosylmethion 81.9 3.1 6.7E-05 37.0 5.2 47 49-97 57-103 (414)
370 cd08279 Zn_ADH_class_III Class 81.6 15 0.00032 33.2 10.0 103 47-168 174-281 (363)
371 COG0270 Dcm Site-specific DNA 81.6 4.2 9.1E-05 36.7 6.3 73 56-142 3-76 (328)
372 KOG2078|consensus 81.5 0.6 1.3E-05 43.4 0.7 64 53-124 247-310 (495)
373 KOG1227|consensus 81.5 0.52 1.1E-05 41.9 0.3 101 55-168 194-296 (351)
374 PF02826 2-Hacid_dh_C: D-isome 81.4 3.4 7.4E-05 33.7 5.2 90 55-168 35-126 (178)
375 PRK10083 putative oxidoreducta 81.0 13 0.00028 33.1 9.2 105 47-168 152-258 (339)
376 TIGR02819 fdhA_non_GSH formald 80.6 19 0.00041 33.3 10.4 43 48-90 178-221 (393)
377 PRK03562 glutathione-regulated 80.5 4.5 9.7E-05 40.0 6.5 92 57-168 401-497 (621)
378 PRK15469 ghrA bifunctional gly 80.2 5.7 0.00012 35.7 6.6 89 55-168 135-225 (312)
379 PRK13243 glyoxylate reductase; 80.1 2.2 4.8E-05 38.7 4.0 89 55-168 149-239 (333)
380 PF10354 DUF2431: Domain of un 79.7 23 0.00051 28.7 9.4 102 62-168 3-124 (166)
381 PRK05786 fabG 3-ketoacyl-(acyl 79.5 15 0.00033 30.6 8.8 60 55-126 4-66 (238)
382 cd08263 Zn_ADH10 Alcohol dehyd 79.4 18 0.00038 32.8 9.7 99 51-168 183-286 (367)
383 PRK07066 3-hydroxybutyryl-CoA 79.4 12 0.00027 33.7 8.4 102 57-168 8-118 (321)
384 COG0863 DNA modification methy 79.3 7 0.00015 34.3 6.8 51 42-95 210-260 (302)
385 PRK12480 D-lactate dehydrogena 78.3 5.5 0.00012 36.1 5.9 87 55-168 145-233 (330)
386 COG0686 Ald Alanine dehydrogen 78.2 7.7 0.00017 34.9 6.5 94 58-166 170-265 (371)
387 PF07279 DUF1442: Protein of u 78.0 32 0.00069 29.2 9.9 85 45-140 30-122 (218)
388 TIGR02818 adh_III_F_hyde S-(hy 78.0 5.9 0.00013 36.1 6.1 43 48-90 178-221 (368)
389 TIGR00027 mthyl_TIGR00027 meth 77.8 16 0.00035 31.9 8.5 104 57-168 83-196 (260)
390 cd05281 TDH Threonine dehydrog 77.3 15 0.00033 32.8 8.5 38 52-89 160-198 (341)
391 PRK06487 glycerate dehydrogena 77.1 4.3 9.3E-05 36.6 4.8 84 55-168 147-232 (317)
392 TIGR03201 dearomat_had 6-hydro 77.1 4.7 0.0001 36.4 5.1 41 49-90 160-201 (349)
393 PLN02178 cinnamyl-alcohol dehy 76.8 16 0.00034 33.6 8.6 94 54-168 177-272 (375)
394 PLN02702 L-idonate 5-dehydroge 76.7 20 0.00044 32.3 9.3 42 49-90 175-217 (364)
395 PF10237 N6-adenineMlase: Prob 76.4 39 0.00085 27.3 10.0 115 34-168 5-122 (162)
396 PF03492 Methyltransf_7: SAM d 76.0 3.7 8.1E-05 37.3 4.1 99 42-145 3-119 (334)
397 PRK06932 glycerate dehydrogena 75.9 5.5 0.00012 35.8 5.2 85 55-168 146-232 (314)
398 cd08233 butanediol_DH_like (2R 75.9 21 0.00046 31.9 9.1 99 49-168 166-271 (351)
399 COG0677 WecC UDP-N-acetyl-D-ma 75.2 11 0.00024 35.0 6.9 25 144-168 100-127 (436)
400 PRK08306 dipicolinate synthase 75.1 16 0.00034 32.5 7.9 97 46-167 141-239 (296)
401 PRK06128 oxidoreductase; Provi 75.0 48 0.001 29.1 11.0 63 55-126 54-119 (300)
402 PLN02514 cinnamyl-alcohol dehy 74.6 36 0.00078 30.8 10.3 96 53-168 178-274 (357)
403 PRK07574 formate dehydrogenase 74.4 12 0.00026 34.8 7.1 91 55-168 191-283 (385)
404 cd08282 PFDH_like Pseudomonas 74.1 20 0.00043 32.7 8.5 42 49-90 170-212 (375)
405 PF05430 Methyltransf_30: S-ad 73.6 2.6 5.6E-05 32.5 2.1 53 114-168 32-89 (124)
406 PRK06035 3-hydroxyacyl-CoA deh 72.7 7.4 0.00016 34.3 5.2 34 57-91 4-38 (291)
407 PLN02545 3-hydroxybutyryl-CoA 72.6 24 0.00052 31.1 8.4 35 132-167 82-117 (295)
408 cd08296 CAD_like Cinnamyl alco 72.4 36 0.00078 30.2 9.7 99 49-168 157-258 (333)
409 PRK09260 3-hydroxybutyryl-CoA 72.3 24 0.00052 31.0 8.3 98 58-167 3-115 (288)
410 KOG2782|consensus 72.2 3.9 8.4E-05 34.9 3.0 56 41-96 29-84 (303)
411 cd08240 6_hydroxyhexanoate_dh_ 72.1 35 0.00076 30.4 9.5 97 53-168 173-273 (350)
412 PRK07806 short chain dehydroge 72.0 52 0.0011 27.6 10.2 62 55-126 5-69 (248)
413 PRK08324 short chain dehydroge 72.0 21 0.00045 35.7 8.6 60 55-126 421-483 (681)
414 cd08231 MDR_TM0436_like Hypoth 71.6 54 0.0012 29.4 10.7 42 49-90 170-213 (361)
415 PRK06436 glycerate dehydrogena 71.5 6.7 0.00015 35.1 4.6 86 55-168 121-208 (303)
416 cd08274 MDR9 Medium chain dehy 71.4 41 0.00088 29.8 9.8 98 48-168 170-272 (350)
417 cd05279 Zn_ADH1 Liver alcohol 70.8 30 0.00065 31.3 8.9 43 48-90 176-219 (365)
418 PRK11790 D-3-phosphoglycerate 70.5 10 0.00022 35.5 5.7 87 55-168 150-238 (409)
419 PF11899 DUF3419: Protein of u 70.4 3.7 8E-05 38.0 2.7 55 113-168 275-333 (380)
420 PRK09496 trkA potassium transp 70.3 47 0.001 31.0 10.3 91 58-167 2-97 (453)
421 PRK09496 trkA potassium transp 70.2 29 0.00062 32.4 8.8 92 56-165 231-327 (453)
422 PF07101 DUF1363: Protein of u 70.0 1.6 3.6E-05 31.8 0.3 14 59-72 6-19 (124)
423 PLN02928 oxidoreductase family 70.0 13 0.00028 33.9 6.2 99 55-168 158-261 (347)
424 TIGR00692 tdh L-threonine 3-de 68.9 32 0.0007 30.6 8.6 98 52-168 158-260 (340)
425 PRK11154 fadJ multifunctional 68.8 10 0.00022 38.1 5.7 101 57-168 310-424 (708)
426 PF03514 GRAS: GRAS domain fam 68.7 97 0.0021 28.6 13.4 119 46-167 101-242 (374)
427 PLN03139 formate dehydrogenase 68.7 11 0.00023 35.1 5.4 89 55-168 198-290 (386)
428 TIGR01470 cysG_Nterm siroheme 68.5 62 0.0013 27.1 9.6 89 55-166 8-97 (205)
429 cd08298 CAD2 Cinnamyl alcohol 67.9 85 0.0018 27.5 11.1 94 49-168 161-255 (329)
430 PRK15438 erythronate-4-phospha 67.8 12 0.00027 34.6 5.6 87 55-168 115-206 (378)
431 PRK13394 3-hydroxybutyrate deh 67.4 60 0.0013 27.3 9.6 61 55-126 6-69 (262)
432 cd08242 MDR_like Medium chain 67.3 55 0.0012 28.6 9.6 97 47-168 147-244 (319)
433 KOG2539|consensus 67.2 21 0.00046 33.8 7.0 111 55-174 200-320 (491)
434 COG2933 Predicted SAM-dependen 67.0 22 0.00048 31.4 6.5 89 52-162 208-296 (358)
435 cd08243 quinone_oxidoreductase 66.9 69 0.0015 27.6 10.1 96 51-168 138-237 (320)
436 PRK08293 3-hydroxybutyryl-CoA 66.4 27 0.0006 30.6 7.4 33 57-90 4-37 (287)
437 PRK06701 short chain dehydroge 66.4 82 0.0018 27.5 10.5 62 55-126 45-109 (290)
438 cd08266 Zn_ADH_like1 Alcohol d 66.2 61 0.0013 28.2 9.7 42 48-90 159-202 (342)
439 cd05283 CAD1 Cinnamyl alcohol 65.9 37 0.00081 30.2 8.3 42 48-90 162-204 (337)
440 PLN02306 hydroxypyruvate reduc 65.6 22 0.00047 33.1 6.8 105 55-168 164-271 (386)
441 cd08300 alcohol_DH_class_III c 65.5 18 0.00039 32.8 6.2 43 48-90 179-222 (368)
442 PRK11064 wecC UDP-N-acetyl-D-m 65.5 38 0.00081 31.7 8.5 33 57-90 4-37 (415)
443 TIGR02356 adenyl_thiF thiazole 65.3 29 0.00063 28.9 7.0 33 56-88 21-54 (202)
444 cd08301 alcohol_DH_plants Plan 65.3 17 0.00037 32.9 6.1 43 48-90 180-223 (369)
445 PF02737 3HCDH_N: 3-hydroxyacy 64.7 57 0.0012 26.6 8.5 100 59-168 2-113 (180)
446 PRK09422 ethanol-active dehydr 64.5 49 0.0011 29.2 8.8 41 49-90 156-198 (338)
447 cd08235 iditol_2_DH_like L-idi 64.3 55 0.0012 28.9 9.1 101 49-168 159-264 (343)
448 PRK00257 erythronate-4-phospha 64.0 19 0.00042 33.3 6.1 34 55-89 115-149 (381)
449 cd08286 FDH_like_ADH2 formalde 63.9 80 0.0017 28.0 10.1 103 49-168 160-265 (345)
450 PRK13581 D-3-phosphoglycerate 63.8 25 0.00054 34.0 7.1 89 55-168 139-229 (526)
451 cd08267 MDR1 Medium chain dehy 63.8 82 0.0018 27.2 10.0 36 52-88 140-177 (319)
452 PLN03209 translocon at the inn 63.8 22 0.00047 34.9 6.6 88 50-141 74-167 (576)
453 PRK08643 acetoin reductase; Va 62.8 92 0.002 26.2 10.6 60 56-126 2-64 (256)
454 PF03721 UDPG_MGDP_dh_N: UDP-g 62.6 86 0.0019 25.7 9.5 102 57-168 1-119 (185)
455 PRK10537 voltage-gated potassi 62.5 28 0.00061 32.4 6.9 89 57-168 241-335 (393)
456 PRK07530 3-hydroxybutyryl-CoA 62.4 67 0.0014 28.2 9.1 100 57-167 5-117 (292)
457 cd08270 MDR4 Medium chain dehy 62.4 68 0.0015 27.7 9.2 94 49-168 126-221 (305)
458 PF01262 AlaDh_PNT_C: Alanine 62.0 7.3 0.00016 31.4 2.7 100 55-167 19-137 (168)
459 KOG1253|consensus 61.6 6.7 0.00014 37.3 2.6 105 54-168 108-215 (525)
460 PRK11730 fadB multifunctional 61.0 20 0.00044 36.1 6.1 101 57-168 314-427 (715)
461 PRK05808 3-hydroxybutyryl-CoA 59.2 67 0.0015 28.0 8.5 97 58-168 5-117 (282)
462 COG3129 Predicted SAM-dependen 58.7 19 0.00041 31.1 4.6 84 55-145 78-165 (292)
463 PRK12475 thiamine/molybdopteri 58.6 33 0.00071 31.2 6.5 34 56-89 24-58 (338)
464 cd05286 QOR2 Quinone oxidoredu 58.1 1.2E+02 0.0026 25.9 10.3 40 50-90 131-172 (320)
465 PRK15409 bifunctional glyoxyla 58.1 13 0.00029 33.5 3.9 89 55-168 144-235 (323)
466 cd08258 Zn_ADH4 Alcohol dehydr 58.0 1.2E+02 0.0025 26.6 9.9 42 47-89 156-198 (306)
467 PRK07819 3-hydroxybutyryl-CoA 57.6 31 0.00068 30.4 6.1 100 58-168 7-120 (286)
468 TIGR02354 thiF_fam2 thiamine b 57.5 1.1E+02 0.0023 25.6 9.0 33 56-88 21-54 (200)
469 COG0373 HemA Glutamyl-tRNA red 57.4 84 0.0018 29.5 9.1 45 45-89 166-212 (414)
470 PRK07326 short chain dehydroge 57.4 52 0.0011 27.3 7.3 59 55-125 5-66 (237)
471 cd08241 QOR1 Quinone oxidoredu 57.4 29 0.00064 29.9 6.0 40 50-90 134-175 (323)
472 PRK10754 quinone oxidoreductas 57.4 1.3E+02 0.0029 26.2 10.5 97 51-168 136-238 (327)
473 cd08292 ETR_like_2 2-enoyl thi 56.7 87 0.0019 27.2 8.9 40 49-89 133-174 (324)
474 PRK07417 arogenate dehydrogena 56.4 32 0.0007 30.1 6.0 31 58-90 2-34 (279)
475 COG0569 TrkA K+ transport syst 56.3 46 0.00099 28.3 6.7 66 58-139 2-72 (225)
476 COG1052 LdhA Lactate dehydroge 55.4 33 0.00071 31.1 5.9 87 55-168 145-235 (324)
477 cd08269 Zn_ADH9 Alcohol dehydr 55.3 1.1E+02 0.0024 26.4 9.3 101 49-168 123-228 (312)
478 COG1748 LYS9 Saccharopine dehy 54.2 36 0.00079 31.6 6.1 69 57-139 2-74 (389)
479 PLN02989 cinnamyl-alcohol dehy 54.1 82 0.0018 27.7 8.4 79 55-142 4-86 (325)
480 KOG2811|consensus 54.0 33 0.00071 31.6 5.6 35 55-89 182-219 (420)
481 PRK06124 gluconate 5-dehydroge 53.9 80 0.0017 26.6 8.0 60 55-125 10-72 (256)
482 PF05050 Methyltransf_21: Meth 53.7 20 0.00042 28.0 3.9 30 61-90 1-34 (167)
483 PRK10637 cysG siroheme synthas 53.5 1.1E+02 0.0025 28.9 9.6 88 55-166 11-100 (457)
484 cd05288 PGDH Prostaglandin deh 53.1 1.2E+02 0.0027 26.4 9.4 39 51-90 141-181 (329)
485 PRK07904 short chain dehydroge 53.0 1.1E+02 0.0023 26.0 8.7 66 53-126 5-73 (253)
486 cd08250 Mgc45594_like Mgc45594 52.5 1.6E+02 0.0035 25.7 10.3 98 50-168 134-236 (329)
487 cd01483 E1_enzyme_family Super 52.3 95 0.0021 23.9 7.5 31 58-88 1-32 (143)
488 cd08268 MDR2 Medium chain dehy 52.3 1.5E+02 0.0033 25.4 9.8 40 50-90 139-180 (328)
489 PRK08644 thiamine biosynthesis 52.0 44 0.00096 28.1 5.9 33 56-88 28-61 (212)
490 PRK06129 3-hydroxyacyl-CoA deh 51.9 1.1E+02 0.0024 27.1 8.8 32 57-90 3-36 (308)
491 cd08238 sorbose_phosphate_red 51.8 23 0.00051 32.7 4.6 41 50-90 170-214 (410)
492 PRK07688 thiamine/molybdopteri 51.7 68 0.0015 29.2 7.4 34 56-89 24-58 (339)
493 PRK06949 short chain dehydroge 51.7 81 0.0018 26.5 7.7 60 55-125 8-70 (258)
494 cd08262 Zn_ADH8 Alcohol dehydr 51.6 1.4E+02 0.003 26.3 9.5 43 48-90 154-197 (341)
495 TIGR02279 PaaC-3OHAcCoADH 3-hy 51.4 30 0.00065 33.3 5.3 34 57-91 6-40 (503)
496 PRK07502 cyclohexadienyl dehyd 51.2 66 0.0014 28.5 7.2 34 57-90 7-42 (307)
497 PLN02353 probable UDP-glucose 51.1 46 0.00099 31.8 6.4 34 57-90 2-37 (473)
498 KOG1269|consensus 51.0 26 0.00057 32.2 4.6 65 56-126 181-245 (364)
499 PRK05562 precorrin-2 dehydroge 50.8 81 0.0018 26.9 7.3 82 55-157 24-107 (223)
500 cd08244 MDR_enoyl_red Possible 50.7 1.6E+02 0.0035 25.5 9.7 43 47-90 134-178 (324)
No 1
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=99.95 E-value=4.5e-27 Score=197.47 Aligned_cols=172 Identities=47% Similarity=0.770 Sum_probs=130.8
Q ss_pred HHhhc-CCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhH
Q psy17227 15 YNQSV-TEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAK 93 (268)
Q Consensus 15 y~~~~-~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~ 93 (268)
|++++ |++..|++|..|++..|||+.+..+..+++.++++++++++|||||.|.+...+|..+++.+++|||+.+....
T Consensus 1 y~~~v~~~~~~l~~y~~~s~~~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~ 80 (205)
T PF08123_consen 1 YNRSVSPNPKVLNKYKSFSSETYGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHD 80 (205)
T ss_dssp HHHHTGCGGGGGGCSTTTCCCCGGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHH
T ss_pred CCccccCCHHHHhccccCCCcceeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHH
Confidence 88999 89999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred HHH-HHHHHHHHHHHhccccccEEEEEcCCCCCccccc-ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227 94 YAE-MHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK-ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSF 171 (268)
Q Consensus 94 ~a~-~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~ 171 (268)
+|+ +.+.++++++..|....++++.+||+.+.++... ..++|+|++|+++|.+++...+.+++..||||.+||++.++
T Consensus 81 ~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 81 LAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp HHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred HHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 776 5566667777777766789999999998764332 35789999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCC
Q psy17227 172 CPLNFRITDRNLTDG 186 (268)
Q Consensus 172 ~~~~~~~~~~~~~~i 186 (268)
+|..+.+...+.+++
T Consensus 161 ~~~~~~~~~~~~~~~ 175 (205)
T PF08123_consen 161 CPRRRSINSRNLDDI 175 (205)
T ss_dssp S-TT----TTSTTSG
T ss_pred CCCCcccchhhccCh
Confidence 988766555454443
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.93 E-value=9.4e-25 Score=186.39 Aligned_cols=151 Identities=19% Similarity=0.271 Sum_probs=120.0
Q ss_pred HHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeC
Q psy17227 8 RHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEK 87 (268)
Q Consensus 8 ~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~ 87 (268)
+..+.++|+.+.+.+|.+|....+.- ...--+.+++.++..+|.+|||||||||.+++.+++..|..+|+|+|+
T Consensus 10 ~~~v~~vF~~ia~~YD~~n~~~S~g~------~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~ 83 (238)
T COG2226 10 QEKVQKVFDKVAKKYDLMNDLMSFGL------HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDI 83 (238)
T ss_pred HHHHHHHHHhhHHHHHhhcccccCcc------hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEEC
Confidence 46789999999999999996665553 111123577788888999999999999999999999988778999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227 88 ADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 88 s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~ 167 (268)
|+.|...++ ++ +...+. .+++|++||+++|||+|++||+ +.++..+.+.++..++|+|++|||||||++++
T Consensus 84 s~~ML~~a~--~k----~~~~~~--~~i~fv~~dAe~LPf~D~sFD~-vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 84 SESMLEVAR--EK----LKKKGV--QNVEFVVGDAENLPFPDNSFDA-VTISFGLRNVTDIDKALKEMYRVLKPGGRLLV 154 (238)
T ss_pred CHHHHHHHH--HH----hhccCc--cceEEEEechhhCCCCCCccCE-EEeeehhhcCCCHHHHHHHHHHhhcCCeEEEE
Confidence 998555544 32 223333 2499999999999999998876 55556666779999999999999999999998
Q ss_pred eCCCCC
Q psy17227 168 SKSFCP 173 (268)
Q Consensus 168 ~~~~~~ 173 (268)
.+...|
T Consensus 155 le~~~p 160 (238)
T COG2226 155 LEFSKP 160 (238)
T ss_pred EEcCCC
Confidence 744443
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.88 E-value=5.1e-23 Score=176.75 Aligned_cols=151 Identities=20% Similarity=0.264 Sum_probs=80.4
Q ss_pred HHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeC
Q psy17227 9 HIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEK 87 (268)
Q Consensus 9 ~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~ 87 (268)
+-+.++|+++.+.+|.+|....+... ..+. +.+++.++..+|.+|||||||||.+++.+++..+. .+|+|+|+
T Consensus 7 ~~v~~~Fd~ia~~YD~~n~~ls~g~~---~~wr---~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~ 80 (233)
T PF01209_consen 7 QYVRKMFDRIAPRYDRMNDLLSFGQD---RRWR---RKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDI 80 (233)
T ss_dssp ------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES
T ss_pred HHHHHHHHHHHHHhCCCccccCCcHH---HHHH---HHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecC
Confidence 45889999999999999876554321 1111 24666678899999999999999999999887653 46999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227 88 ADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 88 s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~ 167 (268)
|+.|...++ +++. ..+ ..+|+++++|++++|+++++||+ ++++..+...++....++|++|+|||||++++
T Consensus 81 s~~ML~~a~--~k~~----~~~--~~~i~~v~~da~~lp~~d~sfD~-v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 81 SPGMLEVAR--KKLK----REG--LQNIEFVQGDAEDLPFPDNSFDA-VTCSFGLRNFPDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp -HHHHHHHH--HHHH----HTT----SEEEEE-BTTB--S-TT-EEE-EEEES-GGG-SSHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHH--HHHH----hhC--CCCeeEEEcCHHHhcCCCCceeE-EEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 998665554 3222 222 24899999999999998876654 33344455668999999999999999999998
Q ss_pred eCCCCCC
Q psy17227 168 SKSFCPL 174 (268)
Q Consensus 168 ~~~~~~~ 174 (268)
.+...|.
T Consensus 152 le~~~p~ 158 (233)
T PF01209_consen 152 LEFSKPR 158 (233)
T ss_dssp EEEEB-S
T ss_pred eeccCCC
Confidence 8555554
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.85 E-value=2.7e-20 Score=162.88 Aligned_cols=150 Identities=14% Similarity=0.112 Sum_probs=109.2
Q ss_pred HHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHH-HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEE
Q psy17227 8 RHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLIS-RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGV 85 (268)
Q Consensus 8 ~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~-~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~Gi 85 (268)
...+.++|+++.+.+|.++.+..+.. ....+ .+++.+++.++.+|||||||+|.++..+++..+. .+|+|+
T Consensus 32 ~~~v~~~f~~~A~~YD~~~~~~s~g~-------~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gv 104 (261)
T PLN02233 32 ANERQALFNRIAPVYDNLNDLLSLGQ-------HRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGL 104 (261)
T ss_pred HHHHHHHHHHhhhHHHHhhhhhcCCh-------hHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEE
Confidence 45688999999988887765533321 12222 2455678889999999999999999988887653 369999
Q ss_pred eCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCCCcE
Q psy17227 86 EKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKDGAR 164 (268)
Q Consensus 86 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~LkpGG~ 164 (268)
|+|+.|+..|+ ++.... .. ....+++++++|+.++|++++++| +|+++ .++|.+++...++|++|+|||||+
T Consensus 105 D~S~~ml~~A~--~r~~~~--~~-~~~~~i~~~~~d~~~lp~~~~sfD--~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~ 177 (261)
T PLN02233 105 DFSSEQLAVAA--SRQELK--AK-SCYKNIEWIEGDATDLPFDDCYFD--AITMGYGLRNVVDRLKAMQEMYRVLKPGSR 177 (261)
T ss_pred ECCHHHHHHHH--HHhhhh--hh-ccCCCeEEEEcccccCCCCCCCEe--EEEEecccccCCCHHHHHHHHHHHcCcCcE
Confidence 99998666654 221100 00 113489999999999999876654 55554 456778999999999999999999
Q ss_pred EEEeCCC
Q psy17227 165 IVSSKSF 171 (268)
Q Consensus 165 ~i~~~~~ 171 (268)
+++.+..
T Consensus 178 l~i~d~~ 184 (261)
T PLN02233 178 VSILDFN 184 (261)
T ss_pred EEEEECC
Confidence 9987443
No 5
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=2.9e-20 Score=161.67 Aligned_cols=188 Identities=18% Similarity=0.224 Sum_probs=125.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227 41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG 120 (268)
Q Consensus 41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g 120 (268)
...+..++++++++||++|||||||+|.+++++|++++.. |+|+++|+++...+ +++.+..|.. .+++++..
T Consensus 58 ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~-V~GvTlS~~Q~~~~------~~r~~~~gl~-~~v~v~l~ 129 (283)
T COG2230 58 RAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVT-VVGVTLSEEQLAYA------EKRIAARGLE-DNVEVRLQ 129 (283)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCE-EEEeeCCHHHHHHH------HHHHHHcCCC-cccEEEec
Confidence 3455679999999999999999999999999999999887 99999999744433 3334456653 58999999
Q ss_pred CCCCCcccccccceEEEEEeccccCcC--HHHHHHHHHhcCCCCcEEEEeCCCCCC-CcccccccccCCCCCCCCCCccc
Q psy17227 121 DFLTEEHREKITQASIVFVNNFAFGPT--VDHALKERFQDLKDGARIVSSKSFCPL-NFRITDRNLTDGGKKVPPGRGCV 197 (268)
Q Consensus 121 D~~~l~~~~~~~d~dvv~~~~~~~~~~--~~~~l~e~~r~LkpGG~~i~~~~~~~~-~~~~~~~~~~~i~~~l~~~~g~~ 197 (268)
|..+++- . ||. +|++.++-|... ....|+.+++.|+|||+++...-..+. .+. .....+.+.+. ||+.
T Consensus 130 d~rd~~e--~-fDr-IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiF--PgG~ 200 (283)
T COG2230 130 DYRDFEE--P-FDR-IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIF--PGGE 200 (283)
T ss_pred ccccccc--c-cce-eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc---cchHHHHHhCC--CCCc
Confidence 9998762 2 676 888888855433 778899999999999999865222222 110 22333334443 4444
Q ss_pred ccccccccccccCCccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhhcc
Q psy17227 198 DQTLTSLSTATALPVSELHTELEIPPTPAETPYSLQMLLDILRNQYLAMIERLKS 252 (268)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (268)
.++...+.... ....+.+.......+++..+ +..|+.+|.+.++.+..
T Consensus 201 lPs~~~i~~~~------~~~~~~v~~~~~~~~hYa~T-l~~W~~~f~~~~~~a~~ 248 (283)
T COG2230 201 LPSISEILELA------SEAGFVVLDVESLRPHYART-LRLWRERFEANRDEAIA 248 (283)
T ss_pred CCCHHHHHHHH------HhcCcEEehHhhhcHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34332222110 01112222222346777777 46699999988888633
No 6
>KOG1540|consensus
Probab=99.84 E-value=3.2e-20 Score=156.71 Aligned_cols=150 Identities=12% Similarity=0.135 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHH-HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC----
Q psy17227 5 GLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLIS-RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC---- 79 (268)
Q Consensus 5 ~~~~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~-~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~---- 79 (268)
+-=++.|+.+|..+.+.+|.||. +++-. .+ +..+ ..+.+++..++++|||++||||.+++.+.+..+.
T Consensus 56 ~eke~~V~~vF~~vA~~YD~mND--~mSlG----iH-RlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~ 128 (296)
T KOG1540|consen 56 SEKERLVHHVFESVAKKYDIMND--AMSLG----IH-RLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGD 128 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH--Hhhcc----hh-HHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCC
Confidence 34478899999999988888853 33321 11 1222 3667888899999999999999999999988776
Q ss_pred --cEEEEEeCCCChhHHHHHHHHHHHHHHHhcccc-ccEEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHH
Q psy17227 80 --KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRH-GEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERF 156 (268)
Q Consensus 80 --~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~ 156 (268)
.+|+++|+||+|...++ +++. ..+.+. ..+.|+++|+++|||+++++|. ..+...+-.++++.++++|+|
T Consensus 129 ~~~~V~v~Dinp~mL~vgk--qRa~----~~~l~~~~~~~w~~~dAE~LpFdd~s~D~-yTiafGIRN~th~~k~l~EAY 201 (296)
T KOG1540|consen 129 RESKVTVLDINPHMLAVGK--QRAK----KRPLKASSRVEWVEGDAEDLPFDDDSFDA-YTIAFGIRNVTHIQKALREAY 201 (296)
T ss_pred CCceEEEEeCCHHHHHHHH--HHHh----hcCCCcCCceEEEeCCcccCCCCCCccee-EEEecceecCCCHHHHHHHHH
Confidence 67999999998655554 2222 234432 2499999999999999987765 445555667899999999999
Q ss_pred hcCCCCcEEEEe
Q psy17227 157 QDLKDGARIVSS 168 (268)
Q Consensus 157 r~LkpGG~~i~~ 168 (268)
|||||||+|.+.
T Consensus 202 RVLKpGGrf~cL 213 (296)
T KOG1540|consen 202 RVLKPGGRFSCL 213 (296)
T ss_pred HhcCCCcEEEEE
Confidence 999999999986
No 7
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.84 E-value=3.4e-21 Score=169.02 Aligned_cols=191 Identities=17% Similarity=0.190 Sum_probs=114.8
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
.+..++++++++||++|||||||+|++++.+|+++|+. |+||++|+.+... +++++++.|+. .++++.++|+
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~-v~gitlS~~Q~~~------a~~~~~~~gl~-~~v~v~~~D~ 121 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCH-VTGITLSEEQAEY------ARERIREAGLE-DRVEVRLQDY 121 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--E-EEEEES-HHHHHH------HHHHHHCSTSS-STEEEEES-G
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcE-EEEEECCHHHHHH------HHHHHHhcCCC-CceEEEEeec
Confidence 34568999999999999999999999999999999987 9999999873333 33344455653 5899999999
Q ss_pred CCCcccccccceEEEEEeccccC--cCHHHHHHHHHhcCCCCcEEEEeCCCCCCCcccc-cc-cccCCCCCCCCCCcccc
Q psy17227 123 LTEEHREKITQASIVFVNNFAFG--PTVDHALKERFQDLKDGARIVSSKSFCPLNFRIT-DR-NLTDGGKKVPPGRGCVD 198 (268)
Q Consensus 123 ~~l~~~~~~~d~dvv~~~~~~~~--~~~~~~l~e~~r~LkpGG~~i~~~~~~~~~~~~~-~~-~~~~i~~~l~~~~g~~~ 198 (268)
.+++. .||. ||++.++.|. .+....++++.+.|||||++++.....+...... .. ....+.+.+. ||+..
T Consensus 122 ~~~~~---~fD~-IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiF--Pgg~l 195 (273)
T PF02353_consen 122 RDLPG---KFDR-IVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIF--PGGYL 195 (273)
T ss_dssp GG------S-SE-EEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTS--TTS--
T ss_pred cccCC---CCCE-EEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeC--CCCCC
Confidence 88764 4777 8888888776 4578889999999999999986522222211111 00 1122333343 44444
Q ss_pred ccccccc---ccccCCccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q psy17227 199 QTLTSLS---TATALPVSELHTELEIPPTPAETPYSLQMLLDILRNQYLAMIERLKSEKYKKE 258 (268)
Q Consensus 199 ~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (268)
+....+. ...++.+.. ....++++.++ +..|+.+|.+.++.+.+. |.++
T Consensus 196 ps~~~~~~~~~~~~l~v~~---------~~~~~~hY~~T-l~~W~~~f~~~~~~i~~~-~~~~ 247 (273)
T PF02353_consen 196 PSLSEILRAAEDAGLEVED---------VENLGRHYART-LRAWRENFDANREEIIAL-FDEE 247 (273)
T ss_dssp -BHHHHHHHHHHTT-EEEE---------EEE-HHHHHHH-HHHHHHHHHHTHHHHHHH-SHHH
T ss_pred CCHHHHHHHHhcCCEEEEE---------EEEcCcCHHHH-HHHHHHHHHHHHHHHHHh-cCHH
Confidence 4443332 222222211 11225555566 566999999999887655 5554
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.82 E-value=3.5e-19 Score=156.00 Aligned_cols=199 Identities=14% Similarity=0.134 Sum_probs=126.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227 41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG 120 (268)
Q Consensus 41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g 120 (268)
.+....++..+++.++.+|||||||+|..+..++..+++. |+|+|+|+.++..++ +++. ...+++|+++
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~-v~giD~s~~~~~~a~--~~~~--------~~~~i~~~~~ 106 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAH-VHGVDICEKMVNIAK--LRNS--------DKNKIEFEAN 106 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCE-EEEEECCHHHHHHHH--HHcC--------cCCceEEEEC
Confidence 3557789999999999999999999999999998877665 999999997555443 2211 1347999999
Q ss_pred CCCCCcccccccceEEEEEe-ccccCc--CHHHHHHHHHhcCCCCcEEEEeCCCCCCCcccccccccCCCCCCCCCCccc
Q psy17227 121 DFLTEEHREKITQASIVFVN-NFAFGP--TVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRNLTDGGKKVPPGRGCV 197 (268)
Q Consensus 121 D~~~l~~~~~~~d~dvv~~~-~~~~~~--~~~~~l~e~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~ 197 (268)
|+.+.|+++.. +|+|++. .++|.+ +....+++++++|||||+|++++................+..... ....
T Consensus 107 D~~~~~~~~~~--FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~--~~~~ 182 (263)
T PTZ00098 107 DILKKDFPENT--FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKY--TLIP 182 (263)
T ss_pred CcccCCCCCCC--eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCC--CCCC
Confidence 99998887654 5667764 456664 788899999999999999999855332210000000000000000 0011
Q ss_pred ccccccccccccCCccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Q psy17227 198 DQTLTSLSTATALPVSELHTELEIPPTPAETPYSLQMLLDILRNQYLAMIERLKSEKYKKEVED 261 (268)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (268)
...+..++.+.++...... ++.. . ....+...++.+..+..+..+.. +.+|.+.|..
T Consensus 183 ~~~~~~~l~~aGF~~v~~~---d~~~--~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 239 (263)
T PTZ00098 183 IQEYGDLIKSCNFQNVVAK---DISD--Y-WLELLQVELKKLEEKKEEFLKLY-SEKEYNSLKD 239 (263)
T ss_pred HHHHHHHHHHCCCCeeeEE---eCcH--H-HHHHHHHHHHHHHHhHHHHHHhc-CHHHHHHHHH
Confidence 1233444455555443332 1111 1 12234455677777777777775 7777777765
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.80 E-value=6.9e-19 Score=159.48 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=108.9
Q ss_pred CchHHHHHHHHHHHHhhcCCccccccCCCCCCCCccc---------CcHHHHHHHHHHcCC-----CCCCEEEEEcCCCC
Q psy17227 2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGE---------TSFDLISRMIDQINA-----TPDDVFVDLGSGVG 67 (268)
Q Consensus 2 ~~~~~~~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~---------~~~~~~~~ll~~l~~-----~~~~~vLDiGCG~G 67 (268)
+|..-++.-+..-|+....-.+.+. -.++....|.. .....+..+++.+++ .++.+|||||||+|
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~~e~~~-g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G 130 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGVWEDVW-GEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIG 130 (340)
T ss_pred cchhhHHHHHHHHHccchHHHHHHh-CCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCC
Confidence 3455567777777876433222221 01222112211 112345567788877 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEE-eccccCc
Q psy17227 68 QVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFV-NNFAFGP 146 (268)
Q Consensus 68 ~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~-~~~~~~~ 146 (268)
.++..+++.+++. |+|||+|+.++..++ ++++ ..+. ..+++|+++|+.++|++++.|| +|++ ....|.+
T Consensus 131 ~~~~~La~~~g~~-v~gvD~s~~~i~~a~--~~~~----~~g~-~~~v~~~~~D~~~~~~~~~~FD--~V~s~~~~~h~~ 200 (340)
T PLN02244 131 GSSRYLARKYGAN-VKGITLSPVQAARAN--ALAA----AQGL-SDKVSFQVADALNQPFEDGQFD--LVWSMESGEHMP 200 (340)
T ss_pred HHHHHHHHhcCCE-EEEEECCHHHHHHHH--HHHH----hcCC-CCceEEEEcCcccCCCCCCCcc--EEEECCchhccC
Confidence 9999999887766 999999997544433 3332 2333 2479999999999998776655 4554 5567889
Q ss_pred CHHHHHHHHHhcCCCCcEEEEeC
Q psy17227 147 TVDHALKERFQDLKDGARIVSSK 169 (268)
Q Consensus 147 ~~~~~l~e~~r~LkpGG~~i~~~ 169 (268)
+....+++++|+|||||+|++.+
T Consensus 201 d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 201 DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999999999999999999864
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.80 E-value=2.3e-18 Score=147.69 Aligned_cols=147 Identities=14% Similarity=0.196 Sum_probs=109.9
Q ss_pred HHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEe
Q psy17227 8 RHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVE 86 (268)
Q Consensus 8 ~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD 86 (268)
+..+.+.|+++.+.+|.++.+..+.. .......++..++++++.+|||+|||+|..+..++...+ ...|+|+|
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~------~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD 77 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQR------HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLD 77 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCc------hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEE
Confidence 56788999999988888876544432 122235677888999999999999999999999988764 33699999
Q ss_pred CCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEE
Q psy17227 87 KADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARI 165 (268)
Q Consensus 87 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~ 165 (268)
+|+.++..++ +++. ..+ ..+++++++|+.+++++++.+ |+|+++.. .+.++....+++++++|||||++
T Consensus 78 ~s~~~~~~a~--~~~~----~~~--~~~v~~~~~d~~~~~~~~~~f--D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l 147 (231)
T TIGR02752 78 FSENMLSVGR--QKVK----DAG--LHNVELVHGNAMELPFDDNSF--DYVTIGFGLRNVPDYMQVLREMYRVVKPGGKV 147 (231)
T ss_pred CCHHHHHHHH--HHHH----hcC--CCceEEEEechhcCCCCCCCc--cEEEEecccccCCCHHHHHHHHHHHcCcCeEE
Confidence 9997555443 3332 122 348999999999988766544 55655444 56688999999999999999999
Q ss_pred EEeCC
Q psy17227 166 VSSKS 170 (268)
Q Consensus 166 i~~~~ 170 (268)
++.+.
T Consensus 148 ~~~~~ 152 (231)
T TIGR02752 148 VCLET 152 (231)
T ss_pred EEEEC
Confidence 97643
No 11
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.74 E-value=5.9e-18 Score=124.09 Aligned_cols=94 Identities=22% Similarity=0.340 Sum_probs=70.6
Q ss_pred EEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEE
Q psy17227 60 VDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFV 139 (268)
Q Consensus 60 LDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~ 139 (268)
||||||+|..+..+++. +...++|+|+|+.++..++ +.. ...++.++++|+.++|++++++ |+|++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~--~~~---------~~~~~~~~~~d~~~l~~~~~sf--D~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQAR--KRL---------KNEGVSFRQGDAEDLPFPDNSF--DVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHH--HHT---------TTSTEEEEESBTTSSSS-TT-E--EEEEE
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHH--hcc---------cccCchheeehHHhCccccccc--ccccc
Confidence 89999999999999887 5556999999987433332 211 1346779999999999988765 55665
Q ss_pred ecc-ccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227 140 NNF-AFGPTVDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 140 ~~~-~~~~~~~~~l~e~~r~LkpGG~~i~ 167 (268)
... .|.++....++++.|+|||||++++
T Consensus 67 ~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 67 NSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 544 5678899999999999999999985
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.74 E-value=1.2e-17 Score=145.57 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=87.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
.+..+++.++..++.+|||||||+|.+++.++...+..+|+|+|+|+.|+..++ + .+++++++|+
T Consensus 17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~------~---------~~~~~~~~d~ 81 (255)
T PRK14103 17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAAR------E---------RGVDARTGDV 81 (255)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH------h---------cCCcEEEcCh
Confidence 356788899989999999999999999999988765556999999997554442 1 2688999999
Q ss_pred CCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 123 LTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 123 ~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+++ +++ .+|+|+++.. +|.+++...+++++++|||||++++.
T Consensus 82 ~~~~-~~~--~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 82 RDWK-PKP--DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hhCC-CCC--CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 8875 233 4567777665 56688999999999999999999986
No 13
>PRK05785 hypothetical protein; Provisional
Probab=99.73 E-value=1.5e-17 Score=142.46 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=94.5
Q ss_pred HHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeC
Q psy17227 8 RHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEK 87 (268)
Q Consensus 8 ~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~ 87 (268)
...+.++|+++.+.+|.++....+... ..+...+.+.+... ..++.+|||||||||.++..+++..+. +|+|+|+
T Consensus 8 ~~~v~~~f~~iA~~YD~~n~~~s~g~~---~~wr~~~~~~l~~~-~~~~~~VLDlGcGtG~~~~~l~~~~~~-~v~gvD~ 82 (226)
T PRK05785 8 WEELQEAYNKIPKAYDRANRFISFNQD---VRWRAELVKTILKY-CGRPKKVLDVAAGKGELSYHFKKVFKY-YVVALDY 82 (226)
T ss_pred HHHHHHHHHhhhHHHHHhhhhccCCCc---HHHHHHHHHHHHHh-cCCCCeEEEEcCCCCHHHHHHHHhcCC-EEEEECC
Confidence 456789999999989998876554321 11222222222221 234779999999999999999887644 4999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEec-cccCcCHHHHHHHHHhcCCCCc
Q psy17227 88 ADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNN-FAFGPTVDHALKERFQDLKDGA 163 (268)
Q Consensus 88 s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~-~~~~~~~~~~l~e~~r~LkpGG 163 (268)
|+.|+..++ + +..++++|++++|+++++| |+|++.. +.|.+++...++|++|+|||..
T Consensus 83 S~~Ml~~a~------~----------~~~~~~~d~~~lp~~d~sf--D~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 83 AENMLKMNL------V----------ADDKVVGSFEALPFRDKSF--DVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CHHHHHHHH------h----------ccceEEechhhCCCCCCCE--EEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 998655543 1 1246899999999988765 5566554 4567899999999999999943
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.72 E-value=4.8e-17 Score=123.60 Aligned_cols=104 Identities=20% Similarity=0.223 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC-CCCcccccccc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF-LTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~-~~l~~~~~~~d 133 (268)
|+.+|||||||+|.+++.+++..+..+|+|||+|+.++..++ +++. ..+. ..+++++++|+ ...+.. ..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~--~~~~----~~~~-~~~i~~~~~d~~~~~~~~---~~ 70 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIAR--ERAA----EEGL-SDRITFVQGDAEFDPDFL---EP 70 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHH--HHHH----HTTT-TTTEEEEESCCHGGTTTS---SC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHH--HHHH----hcCC-CCCeEEEECccccCcccC---CC
Confidence 678999999999999999999666666999999998655554 3332 1222 36999999999 333322 24
Q ss_pred eEEEEEec-ccc-C---cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNN-FAF-G---PTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~-~~~-~---~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|+|++.. ..+ . ++....++++.+.|+|||++++.
T Consensus 71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 71 FDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp EEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 78888876 221 2 45677899999999999999985
No 15
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.71 E-value=3.9e-17 Score=141.94 Aligned_cols=133 Identities=12% Similarity=0.158 Sum_probs=98.0
Q ss_pred HHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeC
Q psy17227 8 RHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEK 87 (268)
Q Consensus 8 ~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~ 87 (268)
++.+.+.|+++...++. +. .........+++.++..++.+|||+|||+|.++..++.. +.. ++|+|+
T Consensus 6 k~~i~~~F~~aa~~Y~~------~~-----~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-v~~~D~ 72 (251)
T PRK10258 6 KQAIAAAFGRAAAHYEQ------HA-----ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQ-VTALDL 72 (251)
T ss_pred HHHHHHHHHHHHHhHhH------HH-----HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCe-EEEEEC
Confidence 45677788887644332 11 133445567888887777889999999999999888763 554 999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEE
Q psy17227 88 ADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIV 166 (268)
Q Consensus 88 s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i 166 (268)
|+.|+..++ ++ .....++++|+.++|++++. +|+|+++.. +|.+++...+.+++++|||||.++
T Consensus 73 s~~~l~~a~--~~-----------~~~~~~~~~d~~~~~~~~~~--fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~ 137 (251)
T PRK10258 73 SPPMLAQAR--QK-----------DAADHYLAGDIESLPLATAT--FDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVA 137 (251)
T ss_pred CHHHHHHHH--hh-----------CCCCCEEEcCcccCcCCCCc--EEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEE
Confidence 997544433 11 12457899999999886654 567777665 456789999999999999999999
Q ss_pred Ee
Q psy17227 167 SS 168 (268)
Q Consensus 167 ~~ 168 (268)
++
T Consensus 138 ~~ 139 (251)
T PRK10258 138 FT 139 (251)
T ss_pred EE
Confidence 86
No 16
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.69 E-value=1.8e-16 Score=127.52 Aligned_cols=104 Identities=23% Similarity=0.350 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHH-hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAA-TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREK 130 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~ 130 (268)
+++.+|||+|||+|.++..++.. .+..+++|+|+|+.++..++ +.++ ..+ ..+++|+++|+.+++ ++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~--~~~~----~~~--~~ni~~~~~d~~~l~~~~~-- 71 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAK--KRAK----ELG--LDNIEFIQGDIEDLPQELE-- 71 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHH--HHHH----HTT--STTEEEEESBTTCGCGCSS--
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhh--cccc----ccc--ccccceEEeehhccccccC--
Confidence 46789999999999999999954 44556999999998555544 3333 233 348999999999977 33
Q ss_pred ccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 131 ITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 131 ~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
..+|+|+++.+ ++..++...++++.+.|||||.+++.
T Consensus 72 -~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 72 -EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp -TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 36788888766 46677889999999999999999986
No 17
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.69 E-value=1.4e-16 Score=138.89 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=88.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
....++..+++.++.+|||||||+|.++..+++..+..+|+|+|+|+.|+..++ + ...+++|+.+|+
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~------~-------~~~~~~~~~~d~ 85 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEAR------S-------RLPDCQFVEADI 85 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH------H-------hCCCCeEEECch
Confidence 456788888889999999999999999999998876666999999997554443 1 124789999999
Q ss_pred CCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 123 LTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 123 ~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+++. ++ .+|+|+++.. .|.++....+++++++|||||.+++.
T Consensus 86 ~~~~~-~~--~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 86 ASWQP-PQ--ALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred hccCC-CC--CccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 87653 23 4567777665 46678899999999999999999985
No 18
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.68 E-value=3.9e-16 Score=147.61 Aligned_cols=116 Identities=14% Similarity=0.232 Sum_probs=92.6
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
....+++.+.+.++.+|||||||+|.+++.++...++. |+|+|+|+.++..|+ +++. +. ..+++|+++|+
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~-v~gvDiS~~~l~~A~--~~~~------~~-~~~v~~~~~d~ 323 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVH-VVGIDLSVNMISFAL--ERAI------GR-KCSVEFEVADC 323 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCE-EEEEECCHHHHHHHH--HHhh------cC-CCceEEEEcCc
Confidence 45678888888899999999999999999999877775 999999997555543 2221 22 24799999999
Q ss_pred CCCcccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227 123 LTEEHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKDGARIVSSKS 170 (268)
Q Consensus 123 ~~l~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~ 170 (268)
.+++++++. +|+|++. .++|.+++...+++++|+|||||++++++.
T Consensus 324 ~~~~~~~~~--fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 324 TKKTYPDNS--FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ccCCCCCCC--EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 998876654 5566664 557889999999999999999999998744
No 19
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.68 E-value=6.3e-16 Score=142.03 Aligned_cols=185 Identities=13% Similarity=0.042 Sum_probs=112.0
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
.+..++++++++++++|||||||+|.++..+++..++. |+|+|+|+.+...++ ++++ + .++++..+|+
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~-V~giDlS~~~l~~A~--~~~~------~---l~v~~~~~D~ 222 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVS-VVGVTISAEQQKLAQ--ERCA------G---LPVEIRLQDY 222 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCE-EEEEeCCHHHHHHHH--HHhc------c---CeEEEEECch
Confidence 34557888999999999999999999999999877775 999999998555443 2221 1 2588999998
Q ss_pred CCCcccccccceEEEEEeccccC--cCHHHHHHHHHhcCCCCcEEEEeCCCCCCCcccccccccCCCCCCCCCCcccccc
Q psy17227 123 LTEEHREKITQASIVFVNNFAFG--PTVDHALKERFQDLKDGARIVSSKSFCPLNFRITDRNLTDGGKKVPPGRGCVDQT 200 (268)
Q Consensus 123 ~~l~~~~~~~d~dvv~~~~~~~~--~~~~~~l~e~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~~~~ 200 (268)
.+++ +.+|. |+++..+.|. .+....++++.++|||||++++.....+... ......+.+.+. |+...+.
T Consensus 223 ~~l~---~~fD~-Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~---~~~~~~i~~yif--p~g~lps 293 (383)
T PRK11705 223 RDLN---GQFDR-IVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTD---TNVDPWINKYIF--PNGCLPS 293 (383)
T ss_pred hhcC---CCCCE-EEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC---CCCCCCceeeec--CCCcCCC
Confidence 7652 33443 3344444454 3457789999999999999998632222110 011112222222 3322222
Q ss_pred cccccc--cccCCccccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHhhcchhhHHHH
Q psy17227 201 LTSLST--ATALPVSELHTELEIPPTPAETPYSLQMLLDILRNQYLAMIERLKSEKYKKEV 259 (268)
Q Consensus 201 ~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (268)
...+.. +.++. +......++++.++ +..|+.+|.+.++.+.. .|.+..
T Consensus 294 ~~~i~~~~~~~~~---------v~d~~~~~~hy~~T-L~~W~~~f~~~~~~~~~-~~~~~~ 343 (383)
T PRK11705 294 VRQIAQASEGLFV---------MEDWHNFGADYDRT-LMAWHENFEAAWPELAD-NYSERF 343 (383)
T ss_pred HHHHHHHHHCCcE---------EEEEecChhhHHHH-HHHHHHHHHHHHHHHHH-hCCHHH
Confidence 222211 11111 11112235555555 56699999999888743 665543
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.67 E-value=4.3e-16 Score=140.15 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=84.5
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
..++..++..+|.+|||||||+|.++..++.. +...|+|||+|+.+..-+++... ..+ ...+++++.+|+.+
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g~~~V~GiD~S~~~l~q~~a~~~------~~~-~~~~i~~~~~d~e~ 183 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-GAKLVVGIDPSQLFLCQFEAVRK------LLG-NDQRAHLLPLGIEQ 183 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHH------hcC-CCCCeEEEeCCHHH
Confidence 34666777667899999999999999998876 55459999999863322221111 111 12479999999999
Q ss_pred CcccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EEHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|+ ++. +|+|++. .++|..++...+++++++|||||.+++.
T Consensus 184 lp~-~~~--FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 184 LPA-LKA--FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CCC-cCC--cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 987 443 4566665 4468889999999999999999999975
No 21
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.67 E-value=2.6e-16 Score=137.20 Aligned_cols=114 Identities=13% Similarity=0.203 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
.+..+++.+. .++.+|||+|||+|.++..+++. +.. |+|+|+|+.|+..++ +++ ...+. ..+++++++|+
T Consensus 33 ~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~-v~~vD~s~~~l~~a~--~~~----~~~g~-~~~v~~~~~d~ 102 (255)
T PRK11036 33 DLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQ-VILCDLSAEMIQRAK--QAA----EAKGV-SDNMQFIHCAA 102 (255)
T ss_pred HHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCE-EEEEECCHHHHHHHH--HHH----HhcCC-ccceEEEEcCH
Confidence 3445777776 55679999999999999999875 555 999999998655544 322 22333 24799999999
Q ss_pred CCCc-ccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 123 LTEE-HREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 123 ~~l~-~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+++ +.+. .+|+|+++.. .|.+++...+.++.++|||||++++.
T Consensus 103 ~~l~~~~~~--~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 103 QDIAQHLET--PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHHhhhcCC--CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 8864 3343 3566776655 56688999999999999999999865
No 22
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.66 E-value=5.3e-16 Score=139.65 Aligned_cols=116 Identities=15% Similarity=0.183 Sum_probs=88.2
Q ss_pred HHHHHHHHcCC-CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227 43 LISRMIDQINA-TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD 121 (268)
Q Consensus 43 ~~~~ll~~l~~-~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD 121 (268)
....+++.+.+ .++.+|||||||+|.++..+++..+...++|+|+|+.|...++ ++.. ..+++++.+|
T Consensus 100 ~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~--~k~~---------~~~i~~i~gD 168 (340)
T PLN02490 100 MRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK--QKEP---------LKECKIIEGD 168 (340)
T ss_pred HHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHH--Hhhh---------ccCCeEEecc
Confidence 33456676665 4688999999999999998888776556999999997544443 2211 2478999999
Q ss_pred CCCCcccccccceEEEEEec-cccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227 122 FLTEEHREKITQASIVFVNN-FAFGPTVDHALKERFQDLKDGARIVSSKSF 171 (268)
Q Consensus 122 ~~~l~~~~~~~d~dvv~~~~-~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~ 171 (268)
+++++++++.+ |+|+++. +.++++....+++++++|||||++++.++.
T Consensus 169 ~e~lp~~~~sF--DvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 169 AEDLPFPTDYA--DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred HHhCCCCCCce--eEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99998866544 5566554 467889999999999999999999876443
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.65 E-value=4.3e-16 Score=139.64 Aligned_cols=105 Identities=15% Similarity=0.060 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.++.+|||||||+|.++..+++ .|+. |+|||+|+.++..++ .+++ ..+. ..+++++++|++++++.+..||
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~-~g~~-V~GID~s~~~i~~Ar--~~~~----~~~~-~~~i~~~~~dae~l~~~~~~FD 200 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR-MGAT-VTGVDAVDKNVKIAR--LHAD----MDPV-TSTIEYLCTTAEKLADEGRKFD 200 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHH-cCCE-EEEEeCCHHHHHHHH--HHHH----hcCc-ccceeEEecCHHHhhhccCCCC
Confidence 4677999999999999998876 4665 999999998666654 2222 1111 2479999999999887655555
Q ss_pred eEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+ |+.++.+.|.+++...++++.++|||||.++++
T Consensus 201 ~-Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 201 A-VLSLEVIEHVANPAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred E-EEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEE
Confidence 4 444455578899999999999999999999986
No 24
>KOG3924|consensus
Probab=99.65 E-value=3.2e-16 Score=139.87 Aligned_cols=170 Identities=40% Similarity=0.689 Sum_probs=148.3
Q ss_pred hHHHHHHHHHHHHhhcCCccccc-cCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEE
Q psy17227 4 RGLLRHIIQQTYNQSVTEPEKLN-VYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKIC 82 (268)
Q Consensus 4 ~~~~~~~~~~~y~~~~~~~~~~~-~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v 82 (268)
+++...+..=.|...++|+..++ .|.+|++.+|||+.......+++.+++.+++.+.|+|+|.|.+...+|...++..-
T Consensus 140 ~sva~~~~~iaY~lsipd~~~L~~hYk~~ss~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~s 219 (419)
T KOG3924|consen 140 GSVAWTITHIAYELSIPDPAILNQHYKSFSSETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKS 219 (419)
T ss_pred hhhhhccceeEEEeccCCHHHHHHhhccccccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccc
Confidence 44455556667888999999999 78999999999999999999999999999999999999999999999988888888
Q ss_pred EEEeCCCChhHHHHHH-HHHHHHHHHhccccccEEEEEcCCCCCccccc-ccceEEEEEeccccCcCHHHHHHHHHhcCC
Q psy17227 83 WGVEKADLPAKYAEMH-TVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK-ITQASIVFVNNFAFGPTVDHALKERFQDLK 160 (268)
Q Consensus 83 ~GiD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~Lk 160 (268)
+|+++...+..++.++ +..++.|+..|.+...++.++|++.+..+... ...+++|++|++.|.|++...+.+++..+|
T Consensus 220 vG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck 299 (419)
T KOG3924|consen 220 VGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCK 299 (419)
T ss_pred cceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCC
Confidence 9999999988888754 56777888899877789999999987553222 235789999999999999999999999999
Q ss_pred CCcEEEEeCCCCC
Q psy17227 161 DGARIVSSKSFCP 173 (268)
Q Consensus 161 pGG~~i~~~~~~~ 173 (268)
+|.++|++.++.+
T Consensus 300 ~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 300 DGTRIISSKPLVP 312 (419)
T ss_pred CcceEeccccccc
Confidence 9999999988876
No 25
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.65 E-value=1.8e-15 Score=133.05 Aligned_cols=112 Identities=21% Similarity=0.279 Sum_probs=86.7
Q ss_pred HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc
Q psy17227 50 QINATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR 128 (268)
Q Consensus 50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~ 128 (268)
..+++++++|||||||+|..++.+++..+.. +|+|+|+|+.++..++ ++.. ..+ ..+++++++|+.++|++
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~--~~~~----~~g--~~~v~~~~~d~~~l~~~ 143 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKAR--ANAR----KAG--YTNVEFRLGEIEALPVA 143 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHH--HHHH----HcC--CCCEEEEEcchhhCCCC
Confidence 3467899999999999999988877776653 6999999998555443 3332 223 24899999999998876
Q ss_pred ccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227 129 EKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSKSF 171 (268)
Q Consensus 129 ~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~~~ 171 (268)
+. .+|+|+++.. .|.++....+++++++|||||++++.+..
T Consensus 144 ~~--~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 144 DN--SVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CC--ceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 55 3567777655 56778899999999999999999987443
No 26
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.64 E-value=2.2e-15 Score=126.50 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=80.7
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
.+++.++..++.+|||+|||+|..++.+|+. +.. |+|+|+|+.++..++ +.+. ..+. .+++++++|+.++
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~-V~gvD~S~~~i~~a~--~~~~----~~~~--~~v~~~~~d~~~~ 90 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFD-VTAWDKNPMSIANLE--RIKA----AENL--DNLHTAVVDLNNL 90 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCE-EEEEeCCHHHHHHHH--HHHH----HcCC--CcceEEecChhhC
Confidence 5566666777889999999999999999875 655 999999998555543 2222 2232 3689999999887
Q ss_pred cccccccceEEEEEeccc-cCc--CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 EHREKITQASIVFVNNFA-FGP--TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~~~-~~~--~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+++ . .+|+|+++..+ |.+ +....++++.+.|||||.+++.
T Consensus 91 ~~~-~--~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 91 TFD-G--EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CcC-C--CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 764 2 35667766553 333 4677899999999999996654
No 27
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.63 E-value=2.2e-15 Score=134.55 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=85.1
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
+++..++..+|++|||||||+|.++..++.. +...|+|||+|+.|...+++ +++ ..+ ...++.+..+++.++
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~---~~~---~~~-~~~~v~~~~~~ie~l 183 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGH-GAKSLVGIDPTVLFLCQFEA---VRK---LLD-NDKRAILEPLGIEQL 183 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH---HHH---Hhc-cCCCeEEEECCHHHC
Confidence 5777888888999999999999999888765 55569999999864332221 111 111 134789999999998
Q ss_pred cccccccceEEEEEec-cccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 EHREKITQASIVFVNN-FAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~-~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
|... .+|+|+++. ++|.+++...+++++++|||||.+++.
T Consensus 184 p~~~---~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 184 HELY---AFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CCCC---CcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 8532 356676665 478899999999999999999999975
No 28
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.63 E-value=3.9e-15 Score=129.28 Aligned_cols=110 Identities=20% Similarity=0.254 Sum_probs=79.5
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHH--hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAA--TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK 130 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~--~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~ 130 (268)
+.++.+|||||||+|..+..+++. .+..+++|+|+|+.|+..++ +++. ..+. ..+++++++|+.++|+++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~--~~~~----~~~~-~~~v~~~~~d~~~~~~~~- 125 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCR--RHID----AYKA-PTPVDVIEGDIRDIAIEN- 125 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHH--HHHH----hcCC-CCCeEEEeCChhhCCCCC-
Confidence 567889999999999999888774 34446999999998655554 3332 2222 247999999999887642
Q ss_pred ccceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227 131 ITQASIVFVNNF-AFGP--TVDHALKERFQDLKDGARIVSSKSFCP 173 (268)
Q Consensus 131 ~~d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~~i~~~~~~~ 173 (268)
+|+|+++.. +|.+ +....+++++++|||||.|++++.+.+
T Consensus 126 ---~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 126 ---ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred ---CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 355665544 3433 346779999999999999999865543
No 29
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.62 E-value=7.4e-15 Score=122.11 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=79.5
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
++++.+|||||||+|.+++.+++..+..+|+|+|+|+.++..++ ++++ ..+. .+++++++|+.+++. +.
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~--~~~~----~~~l--~~i~~~~~d~~~~~~-~~-- 111 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR--EVAA----ELGL--KNVTVVHGRAEEFGQ-EE-- 111 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH--HHHH----HcCC--CCEEEEeccHhhCCC-CC--
Confidence 44589999999999999999888766666999999998655554 3332 2333 359999999998775 33
Q ss_pred ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+|+|+++.+ .++...++++++.|||||++++.
T Consensus 112 ~fDlV~~~~~---~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 112 KFDVVTSRAV---ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CccEEEEccc---cCHHHHHHHHHHhcCCCeEEEEE
Confidence 4678888653 56778899999999999999985
No 30
>PRK08317 hypothetical protein; Provisional
Probab=99.61 E-value=7.9e-15 Score=125.45 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=88.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
..++..+++.++.+|||+|||+|..+..++... +..+++|+|+|+.++..++ ++.. ....+++++++|+.
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~--~~~~-------~~~~~~~~~~~d~~ 79 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAK--ERAA-------GLGPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH--HHhh-------CCCCceEEEecccc
Confidence 457788899999999999999999999999877 3446999999997544443 2111 12358999999999
Q ss_pred CCcccccccceEEEEEec-cccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227 124 TEEHREKITQASIVFVNN-FAFGPTVDHALKERFQDLKDGARIVSSK 169 (268)
Q Consensus 124 ~l~~~~~~~d~dvv~~~~-~~~~~~~~~~l~e~~r~LkpGG~~i~~~ 169 (268)
++++.+.. +|+|++.. +.|.+++...+++++++|||||.+++.+
T Consensus 80 ~~~~~~~~--~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 80 GLPFPDGS--FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred cCCCCCCC--ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 88876554 45666554 4577899999999999999999999764
No 31
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.61 E-value=2.1e-14 Score=110.52 Aligned_cols=113 Identities=20% Similarity=0.363 Sum_probs=82.1
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
...+++.+++.++++|||+|||+|.++..+++..+..+++|+|+|+.+...++ ++++ ..+ ..+++++++|+.
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~--~~~~----~~~--~~~~~~~~~~~~ 79 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIE--RNAR----RFG--VSNIVIVEGDAP 79 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHH--HHHH----HhC--CCceEEEecccc
Confidence 34577888888899999999999999999998876556999999997544443 3332 223 247999999987
Q ss_pred C-CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 124 T-EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 124 ~-l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+ ++.... .+|+|++.... ......++++++.|||||+|++.
T Consensus 80 ~~~~~~~~--~~D~v~~~~~~--~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 80 EALEDSLP--EPDRVFIGGSG--GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ccChhhcC--CCCEEEECCcc--hhHHHHHHHHHHHcCCCCEEEEE
Confidence 5 332222 45667664321 23457789999999999999975
No 32
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.61 E-value=7.7e-15 Score=126.70 Aligned_cols=111 Identities=20% Similarity=0.200 Sum_probs=80.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHh--CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAAT--GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK 130 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~--~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~ 130 (268)
+.++.+|||||||+|..+..+++.. +..+++|+|+|+.|+..++ ++++ ..+. ..+++++++|+.++++++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~--~~~~----~~~~-~~~v~~~~~d~~~~~~~~- 122 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCR--QHIA----AYHS-EIPVEILCNDIRHVEIKN- 122 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHH--HHHH----hcCC-CCCeEEEECChhhCCCCC-
Confidence 4578899999999999999988863 3345999999998555544 3332 2221 247999999999988642
Q ss_pred ccceEEEEEecc-ccC--cCHHHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227 131 ITQASIVFVNNF-AFG--PTVDHALKERFQDLKDGARIVSSKSFCPL 174 (268)
Q Consensus 131 ~~d~dvv~~~~~-~~~--~~~~~~l~e~~r~LkpGG~~i~~~~~~~~ 174 (268)
+|+|+++.. +|. .+....+++++++|||||.+++.+++.+.
T Consensus 123 ---~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~ 166 (239)
T TIGR00740 123 ---ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 166 (239)
T ss_pred ---CCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCC
Confidence 345555444 333 24577899999999999999998766543
No 33
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.60 E-value=1e-14 Score=120.88 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=76.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA 134 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~ 134 (268)
++.+|||||||+|.+++.+|...+..+|+|||+|+.++.+++ ++++ ..+. .+++++++|+.+++. + ..+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~--~~~~----~~~~--~~i~~i~~d~~~~~~-~--~~f 110 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR--EVKA----ELGL--NNVEIVNGRAEDFQH-E--EQF 110 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH--HHHH----HhCC--CCeEEEecchhhccc-c--CCc
Confidence 488999999999999999887666556999999998655543 3332 2332 479999999998753 2 246
Q ss_pred EEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 135 SIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 135 dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
|+|+++.+ .+....++.+++.|||||++++.
T Consensus 111 D~I~s~~~---~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 111 DVITSRAL---ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred cEEEehhh---hCHHHHHHHHHHhcCCCCEEEEE
Confidence 77888752 45667788889999999999985
No 34
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.59 E-value=2.9e-14 Score=122.20 Aligned_cols=146 Identities=20% Similarity=0.277 Sum_probs=100.5
Q ss_pred HHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCC
Q psy17227 10 IIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKA 88 (268)
Q Consensus 10 ~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s 88 (268)
-+...|+.+...++.++.+..+. ........++..+...++.+|||||||+|.++..++...+ ..+++|+|++
T Consensus 12 ~~~~~~~~~~~~y~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s 85 (239)
T PRK00216 12 KVAEMFDSIAPKYDLMNDLLSFG------LHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFS 85 (239)
T ss_pred HHHHHHHHhhhhHHHHHHHHhcC------CcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCC
Confidence 44567777665555443321111 1223345677777777889999999999999999988775 3459999999
Q ss_pred CChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227 89 DLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 89 ~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~ 167 (268)
+.++..++ +++. ..+. ..+++++.+|+.++++... .+|+|+++.. .+.+++...+.++.+.|+|||.+++
T Consensus 86 ~~~~~~a~--~~~~----~~~~-~~~~~~~~~d~~~~~~~~~--~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 86 EGMLAVGR--EKLR----DLGL-SGNVEFVQGDAEALPFPDN--SFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred HHHHHHHH--Hhhc----cccc-ccCeEEEecccccCCCCCC--CccEEEEecccccCCCHHHHHHHHHHhccCCcEEEE
Confidence 97444433 2221 1111 2479999999998876544 3566666544 5667889999999999999999987
Q ss_pred eCC
Q psy17227 168 SKS 170 (268)
Q Consensus 168 ~~~ 170 (268)
.+.
T Consensus 157 ~~~ 159 (239)
T PRK00216 157 LEF 159 (239)
T ss_pred EEe
Confidence 633
No 35
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.59 E-value=2.5e-15 Score=124.34 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=92.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
...++.+.++.+..+|.|||||+|+.+..++++++...++|||-|++| ++++.. ...+++|..+|+.
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~M--la~Aa~-----------rlp~~~f~~aDl~ 85 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAM--LAKAAQ-----------RLPDATFEEADLR 85 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHH--HHHHHH-----------hCCCCceecccHh
Confidence 467999999999999999999999999999999999889999999983 433211 2468999999999
Q ss_pred CCcccccccceEEEEEeccc-cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 124 TEEHREKITQASIVFVNNFA-FGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 124 ~l~~~~~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++.-+ .+.|++|+|+.+ |.||....|..+...|.|||.+.+-
T Consensus 86 ~w~p~---~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 86 TWKPE---QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred hcCCC---CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence 87632 256899999874 6699999999999999999999986
No 36
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.59 E-value=1.7e-14 Score=120.88 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=78.0
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
..+++.+...++.+|||+|||+|..++.+|+. |.. |+|+|+|+.++..++ +.+. ..+. ++++.++|+..
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~-V~~iD~s~~~l~~a~--~~~~----~~~~---~v~~~~~d~~~ 88 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYD-VRAWDHNPASIASVL--DMKA----RENL---PLRTDAYDINA 88 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCe-EEEEECCHHHHHHHH--HHHH----HhCC---CceeEeccchh
Confidence 35666666667789999999999999999874 665 999999997544433 2222 2222 47888889876
Q ss_pred CcccccccceEEEEEecccc-C--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EEHREKITQASIVFVNNFAF-G--PTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~~~~~~~d~dvv~~~~~~~-~--~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+++ + .+|+|+++.++| . .+....++++++.|||||++++.
T Consensus 89 ~~~~-~--~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 89 AALN-E--DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cccc-C--CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 6653 2 356677665533 2 34567899999999999996654
No 37
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.57 E-value=3.1e-14 Score=120.79 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=98.6
Q ss_pred HHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCC
Q psy17227 12 QQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADL 90 (268)
Q Consensus 12 ~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~ 90 (268)
+++|+.+...++..+....+.. .......++..+...++.+|||+|||+|..+..+++..+. .+++|+|+++.
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~ 75 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGL------HRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE 75 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhccc------HHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH
Confidence 5677777766555543322211 1222345666777778999999999999999999887764 35999999986
Q ss_pred hhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227 91 PAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSK 169 (268)
Q Consensus 91 ~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~ 169 (268)
++..++ ++.. ...+++++.+|+.+++++++ .+|+|+++.. .+.+++...++++.+.|||||++++.+
T Consensus 76 ~~~~~~--~~~~--------~~~~i~~~~~d~~~~~~~~~--~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 76 MLEVAK--KKSE--------LPLNIEFIQADAEALPFEDN--SFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred HHHHHH--HHhc--------cCCCceEEecchhcCCCCCC--cEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 433332 2111 13479999999999886543 4667766544 566788999999999999999999863
No 38
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.57 E-value=1.8e-14 Score=128.89 Aligned_cols=115 Identities=13% Similarity=0.155 Sum_probs=84.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
..+++.++++++.+|||||||+|.+++.+++.++..+++++|+ +.++.. ++++++ ..|. .++++++.+|+.+
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~--a~~~~~----~~gl-~~rv~~~~~d~~~ 210 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDL--VNENAA----EKGV-ADRMRGIAVDIYK 210 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHH--HHHHHH----hCCc-cceEEEEecCccC
Confidence 4477778888999999999999999999999987667999998 443333 333333 3443 2589999999987
Q ss_pred CcccccccceEEEEEecccc-CcC--HHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227 125 EEHREKITQASIVFVNNFAF-GPT--VDHALKERFQDLKDGARIVSSKSF 171 (268)
Q Consensus 125 l~~~~~~~d~dvv~~~~~~~-~~~--~~~~l~e~~r~LkpGG~~i~~~~~ 171 (268)
.+++. +|+|++..++| +++ ....+++++++|||||++++.+..
T Consensus 211 ~~~~~----~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 211 ESYPE----ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred CCCCC----CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 65532 36666666654 332 356799999999999999998543
No 39
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.57 E-value=1.6e-14 Score=123.21 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=78.5
Q ss_pred CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEE
Q psy17227 57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASI 136 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dv 136 (268)
++|||||||+|..+..+++.++..+++|+|+|+.+...++ +++ ...|. ..+++++++|+.+.|+++ .+ |+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~--~~~----~~~gl-~~~i~~~~~d~~~~~~~~-~f--D~ 70 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGR--ERI----RALGL-QGRIRIFYRDSAKDPFPD-TY--DL 70 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHH----HhcCC-CcceEEEecccccCCCCC-CC--CE
Confidence 3799999999999999998875445999999987544443 322 23343 258999999997766543 34 55
Q ss_pred EEE-eccccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227 137 VFV-NNFAFGPTVDHALKERFQDLKDGARIVSSKS 170 (268)
Q Consensus 137 v~~-~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~ 170 (268)
|++ +.+.|.++....+++++++|||||++++.+.
T Consensus 71 I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 71 VFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred eehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 655 4456778899999999999999999998744
No 40
>PRK06922 hypothetical protein; Provisional
Probab=99.56 E-value=1.3e-14 Score=138.52 Aligned_cols=113 Identities=16% Similarity=0.284 Sum_probs=84.0
Q ss_pred HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--c
Q psy17227 50 QINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--H 127 (268)
Q Consensus 50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~ 127 (268)
.+++.++.+|||||||+|.++..+++..+...++|+|+|+.|+..++ ++.. .. ..+++++++|+.++| +
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ar--arl~----~~---g~~ie~I~gDa~dLp~~f 483 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLK--KKKQ----NE---GRSWNVIKGDAINLSSSF 483 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHhh----hc---CCCeEEEEcchHhCcccc
Confidence 34556789999999999999988888776667999999998555543 2221 11 247889999999887 5
Q ss_pred cccccceEEEEEeccccC--------------cCHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227 128 REKITQASIVFVNNFAFG--------------PTVDHALKERFQDLKDGARIVSSKSFCP 173 (268)
Q Consensus 128 ~~~~~d~dvv~~~~~~~~--------------~~~~~~l~e~~r~LkpGG~~i~~~~~~~ 173 (268)
+++ .+|+|+++.++|+ .+....+++++++|||||++++.+...+
T Consensus 484 ede--SFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 484 EKE--SVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred CCC--CEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 544 4677777655442 2467889999999999999999865443
No 41
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.56 E-value=7.5e-14 Score=117.89 Aligned_cols=114 Identities=22% Similarity=0.256 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227 41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK 119 (268)
Q Consensus 41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 119 (268)
+.....+++.++++++++|||||||+|..+..+++..+ ..+|+|+|+++.++..++ +++++ .+. ..++++++
T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~--~~l~~----~~~-~~~v~~~~ 130 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAA--QNIER----LGY-WGVVEVYH 130 (205)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH--HHHHH----cCC-CCcEEEEE
Confidence 34566788889999999999999999999998888764 336999999997554443 44332 232 13699999
Q ss_pred cCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 120 GDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 120 gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|+.+...... .+|+|+++.... ....+++++|||||++++.
T Consensus 131 ~d~~~~~~~~~--~fD~Ii~~~~~~-----~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 131 GDGKRGLEKHA--PFDAIIVTAAAS-----TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred CCcccCCccCC--CccEEEEccCcc-----hhhHHHHHhcCcCcEEEEE
Confidence 99987543332 456777764422 2235788999999999874
No 42
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.55 E-value=8.2e-15 Score=123.82 Aligned_cols=102 Identities=17% Similarity=0.179 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
-+|.+|||||||-|.++..+|+. |.. |+|+|+++.++..|+. ++. +.| .++.+.+..++++......
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~-VtgiD~se~~I~~Ak~--ha~----e~g---v~i~y~~~~~edl~~~~~~-- 124 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GAS-VTGIDASEKPIEVAKL--HAL----ESG---VNIDYRQATVEDLASAGGQ-- 124 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCe-eEEecCChHHHHHHHH--hhh----hcc---ccccchhhhHHHHHhcCCC--
Confidence 48899999999999999999885 765 9999999998888763 222 112 2577888888887654334
Q ss_pred eEEEEE-eccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFV-NNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~-~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|||+| +.+.|-+++...++.+.+.+||||.++++
T Consensus 125 FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 125 FDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred ccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEe
Confidence 455655 55579999999999999999999999876
No 43
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.54 E-value=1.3e-13 Score=117.13 Aligned_cols=115 Identities=19% Similarity=0.264 Sum_probs=84.1
Q ss_pred CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227 39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL 117 (268)
Q Consensus 39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~ 117 (268)
+.+.....+++.++++++++|||||||+|.++..+++..+. .+|+|+|+++.+...++ ++++ ..+ ..++++
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~--~~l~----~~g--~~~v~~ 131 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAK--KTLK----KLG--YDNVEV 131 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH--HHHH----HcC--CCCeEE
Confidence 44556678999999999999999999999999988887654 36999999998555544 3333 233 348999
Q ss_pred EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+++|+.+.+.... .+|+|++.... ++ ....+++.|||||++++.
T Consensus 132 ~~gd~~~~~~~~~--~fD~I~~~~~~--~~---~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 132 IVGDGTLGYEENA--PYDRIYVTAAG--PD---IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred EECCcccCCCcCC--CcCEEEECCCc--cc---chHHHHHhhCCCcEEEEE
Confidence 9999987554333 45677775442 12 234667899999999884
No 44
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.54 E-value=3.6e-14 Score=124.94 Aligned_cols=94 Identities=16% Similarity=0.252 Sum_probs=70.8
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCC---cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGC---KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK 130 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~---~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~ 130 (268)
.++.+|||+|||+|.++..+++..+. ..++|+|+|+.++..|. + ..++++|.++|+.++|++++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~------~-------~~~~~~~~~~d~~~lp~~~~ 150 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAA------K-------RYPQVTFCVASSHRLPFADQ 150 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHH------H-------hCCCCeEEEeecccCCCcCC
Confidence 45678999999999999998876542 24899999997555442 1 13578999999999998776
Q ss_pred ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++ |+|++. +.+ ..+.++.|+|||||+|++.
T Consensus 151 sf--D~I~~~---~~~---~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 151 SL--DAIIRI---YAP---CKAEELARVVKPGGIVITV 180 (272)
T ss_pred ce--eEEEEe---cCC---CCHHHHHhhccCCCEEEEE
Confidence 54 566653 222 2367899999999999976
No 45
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.53 E-value=6.4e-14 Score=119.94 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=82.6
Q ss_pred HHHHHHcCC---CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227 45 SRMIDQINA---TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD 121 (268)
Q Consensus 45 ~~ll~~l~~---~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD 121 (268)
..+++.+.. ..+.+|||||||+|.++..++...+..+++|+|+|+.+...++ +. . ..+++++.+|
T Consensus 21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~--~~---------~-~~~~~~~~~d 88 (240)
T TIGR02072 21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAK--TK---------L-SENVQFICGD 88 (240)
T ss_pred HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHH--Hh---------c-CCCCeEEecc
Confidence 345444432 3457899999999999999988766556899999986433332 11 1 1378999999
Q ss_pred CCCCcccccccceEEEEEeccc-cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 122 FLTEEHREKITQASIVFVNNFA-FGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 122 ~~~l~~~~~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.+.+++++. +|+|+++..+ |..++...+.++.++|||||.+++.
T Consensus 89 ~~~~~~~~~~--fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 89 AEKLPLEDSS--FDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred hhhCCCCCCc--eeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 9998876554 5677776654 5568999999999999999999986
No 46
>PRK04266 fibrillarin; Provisional
Probab=99.53 E-value=1.3e-13 Score=117.99 Aligned_cols=107 Identities=18% Similarity=0.252 Sum_probs=76.1
Q ss_pred HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc-c
Q psy17227 50 QINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH-R 128 (268)
Q Consensus 50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~-~ 128 (268)
.+++++|++|||+|||+|.++..++...+..+|+|+|+++.|+. .+.+.+++ ..++.++.+|+.+... .
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~--~l~~~a~~--------~~nv~~i~~D~~~~~~~~ 136 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMR--ELLEVAEE--------RKNIIPILADARKPERYA 136 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHH--HHHHHhhh--------cCCcEEEECCCCCcchhh
Confidence 68999999999999999999999998876446999999997433 22233321 2479999999976210 0
Q ss_pred ccccceEEEEEeccccCcC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227 129 EKITQASIVFVNNFAFGPT-VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 129 ~~~~d~dvv~~~~~~~~~~-~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.-...+|+|+++.. .++ ....+.++.++|||||+++++
T Consensus 137 ~l~~~~D~i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 137 HVVEKVDVIYQDVA--QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred hccccCCEEEECCC--ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 00123677876422 122 234578999999999999985
No 47
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.52 E-value=2.3e-13 Score=115.69 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227 41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK 119 (268)
Q Consensus 41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 119 (268)
+..+..+++.++++++.+|||||||+|.++..+|+..+. .+|+|+|+++.++..++ ++++ ..+. .++++++
T Consensus 63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~--~~~~----~~g~--~~v~~~~ 134 (215)
T TIGR00080 63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE--RRLR----KLGL--DNVIVIV 134 (215)
T ss_pred HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH--HHHH----HCCC--CCeEEEE
Confidence 345677888999999999999999999999999987654 35999999997555443 4443 2343 4899999
Q ss_pred cCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 120 GDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 120 gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|+.+...... .+|+|+++... ......+++.|||||++++.
T Consensus 135 ~d~~~~~~~~~--~fD~Ii~~~~~-----~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 135 GDGTQGWEPLA--PYDRIYVTAAG-----PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCcccCCcccC--CCCEEEEcCCc-----ccccHHHHHhcCcCcEEEEE
Confidence 99987542222 45677765432 22345678899999999874
No 48
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.52 E-value=4.3e-13 Score=109.60 Aligned_cols=117 Identities=19% Similarity=0.367 Sum_probs=89.7
Q ss_pred CcHHHHH-HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227 39 TSFDLIS-RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL 117 (268)
Q Consensus 39 ~~~~~~~-~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~ 117 (268)
.+.+.++ -.+.+|.++||++++|||||||.+++.+|...+..+|++||-+++++.+.+ +| ++.+| .+|+++
T Consensus 17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~--~N----~~~fg--~~n~~v 88 (187)
T COG2242 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE--RN----AARFG--VDNLEV 88 (187)
T ss_pred CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH--HH----HHHhC--CCcEEE
Confidence 3444443 477899999999999999999999999997777778999999997444333 33 33455 469999
Q ss_pred EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.||+-+.-- +..++|.+|+... ......+..+...|||||++|..
T Consensus 89 v~g~Ap~~L~--~~~~~daiFIGGg---~~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 89 VEGDAPEALP--DLPSPDAIFIGGG---GNIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred EeccchHhhc--CCCCCCEEEECCC---CCHHHHHHHHHHHcCcCCeEEEE
Confidence 9999976321 2225678999765 56778888889999999999985
No 49
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.52 E-value=1.2e-13 Score=116.35 Aligned_cols=111 Identities=17% Similarity=0.131 Sum_probs=78.2
Q ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC-CCC
Q psy17227 47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF-LTE 125 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~-~~l 125 (268)
+.+.+.. ++.+|||||||+|..+..+++..+..+++|+|+|+.++..++ +++. ..+ ..+++++++|+ ..+
T Consensus 33 ~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~--~~~~----~~~--~~~v~~~~~d~~~~l 103 (202)
T PRK00121 33 WAELFGN-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKAL--KKIE----EEG--LTNLRLLCGDAVEVL 103 (202)
T ss_pred HHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHH--HHHH----HcC--CCCEEEEecCHHHHH
Confidence 3344443 678999999999999999988776556999999998555544 3322 222 25799999999 666
Q ss_pred c--ccccccceEEEEEeccccC-c--------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 E--HREKITQASIVFVNNFAFG-P--------TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~--~~~~~~d~dvv~~~~~~~~-~--------~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+ +++.. +|+|+++....+ . .....+++++++|||||.|++.
T Consensus 104 ~~~~~~~~--~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 104 LDMFPDGS--LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred HHHcCccc--cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 6 44443 456666432111 1 1466789999999999999975
No 50
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.51 E-value=9.6e-15 Score=108.75 Aligned_cols=97 Identities=16% Similarity=0.247 Sum_probs=54.5
Q ss_pred EEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc-ccccEEEEEcCCCCCcccccccceEEEE
Q psy17227 60 VDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGK-RHGEFRLVKGDFLTEEHREKITQASIVF 138 (268)
Q Consensus 60 LDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~i~~~~gD~~~l~~~~~~~d~dvv~ 138 (268)
||||||+|.++..++...+..+++|+|+|+.|+..++ +++.+ .+. ....+++...|..+.+.. . .+|+|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~--~fD~V~ 71 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERAR--ERLAE----LGNDNFERLRFDVLDLFDYDPP-E--SFDLVV 71 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTC--CCHHH----CT---EEEEE--SSS---CCC-------SEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHhhh----cCCcceeEEEeecCChhhcccc-c--ccceeh
Confidence 7999999999999999877777999999999664433 22221 111 111334444443332211 2 345555
Q ss_pred E-eccccCcCHHHHHHHHHhcCCCCcEE
Q psy17227 139 V-NNFAFGPTVDHALKERFQDLKDGARI 165 (268)
Q Consensus 139 ~-~~~~~~~~~~~~l~e~~r~LkpGG~~ 165 (268)
+ +.++|.+++...++++++.|||||+|
T Consensus 72 ~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 72 ASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 5 44567789999999999999999986
No 51
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.51 E-value=2e-14 Score=107.57 Aligned_cols=94 Identities=20% Similarity=0.244 Sum_probs=66.6
Q ss_pred EEEEcCCCCHHHHHHHHHh--C-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceE
Q psy17227 59 FVDLGSGVGQVVLQVAAAT--G-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQAS 135 (268)
Q Consensus 59 vLDiGCG~G~~~~~la~~~--~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~d 135 (268)
|||+|||+|..++.++..+ + ..+++|+|+|+.|+..++ ++.. .. ..+++|+++|+.++++.++ .+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~--~~~~----~~---~~~~~~~~~D~~~l~~~~~--~~D 69 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAK--KRFS----ED---GPKVRFVQADARDLPFSDG--KFD 69 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHH--HHSH----HT---TTTSEEEESCTTCHHHHSS--SEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHH--Hhch----hc---CCceEEEECCHhHCcccCC--Cee
Confidence 7999999999999998876 3 246999999998555543 3222 11 2389999999999987655 456
Q ss_pred EEEE-ec-cccC--cCHHHHHHHHHhcCCCCc
Q psy17227 136 IVFV-NN-FAFG--PTVDHALKERFQDLKDGA 163 (268)
Q Consensus 136 vv~~-~~-~~~~--~~~~~~l~e~~r~LkpGG 163 (268)
+|++ .. +.|. ++....++++.++|||||
T Consensus 70 ~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 70 LVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 7776 44 3332 346777899999999998
No 52
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.51 E-value=5.1e-13 Score=111.07 Aligned_cols=116 Identities=16% Similarity=0.299 Sum_probs=83.6
Q ss_pred CcHHHHHH-HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227 39 TSFDLISR-MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL 117 (268)
Q Consensus 39 ~~~~~~~~-ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~ 117 (268)
.+.+.++. +++.+++.++.+|||||||+|.+++.+++..+..+|+|+|+|+.++..++ +++++ .+. .++++
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~--~n~~~----~~~--~~i~~ 85 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIK--ENRQR----FGC--GNIDI 85 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHHH----hCC--CCeEE
Confidence 33444444 56788888999999999999999999988776556999999997555443 33332 232 47999
Q ss_pred EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+++|+.. +++ . .+|+|+++... ..+...+.++++.|||||++++.
T Consensus 86 ~~~d~~~-~~~-~--~~D~v~~~~~~--~~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 86 IPGEAPI-ELP-G--KADAIFIGGSG--GNLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred EecCchh-hcC-c--CCCEEEECCCc--cCHHHHHHHHHHhcCCCeEEEEE
Confidence 9999852 332 2 35677775432 23566788899999999999875
No 53
>KOG1270|consensus
Probab=99.50 E-value=1.4e-14 Score=123.31 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=76.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccc----cEEEEEcCCCCCcccccc
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG----EFRLVKGDFLTEEHREKI 131 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~----~i~~~~gD~~~l~~~~~~ 131 (268)
|++|||+|||+|-++..+|+ .|.. |+|||+++.|++.|++.+.. ...... ++++.+.|.+.... .
T Consensus 90 g~~ilDvGCGgGLLSepLAr-lga~-V~GID~s~~~V~vA~~h~~~------dP~~~~~~~y~l~~~~~~~E~~~~---~ 158 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLAR-LGAQ-VTGIDASDDMVEVANEHKKM------DPVLEGAIAYRLEYEDTDVEGLTG---K 158 (282)
T ss_pred CceEEEeccCccccchhhHh-hCCe-eEeecccHHHHHHHHHhhhc------Cchhccccceeeehhhcchhhccc---c
Confidence 48899999999999999998 5766 99999999988887643211 111122 47888888887542 2
Q ss_pred cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
||+ |+.++.+.|-.++...+..+.+.|||||+++++
T Consensus 159 fDa-VvcsevleHV~dp~~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 159 FDA-VVCSEVLEHVKDPQEFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred cce-eeeHHHHHHHhCHHHHHHHHHHHhCCCCceEee
Confidence 554 444455578899999999999999999999876
No 54
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.50 E-value=3e-13 Score=120.74 Aligned_cols=152 Identities=13% Similarity=0.021 Sum_probs=92.5
Q ss_pred CchHHHHHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-Cc
Q psy17227 2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CK 80 (268)
Q Consensus 2 ~~~~~~~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~ 80 (268)
||+++-..-=++.|.+++. +-.|.+.... -++.......+++.+ .++.+|||+|||+|..+..+++... ..
T Consensus 18 p~~~~yd~~G~~lf~~i~~----~peYy~tr~E--~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~ 89 (301)
T TIGR03438 18 PPKYFYDARGSELFEQICE----LPEYYPTRTE--AAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPA 89 (301)
T ss_pred CchhcccchHHHHHHHHHC----CCccccHHHH--HHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCC
Confidence 4555555555566666652 2334443221 012222333455554 4678899999999999999988763 23
Q ss_pred EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cccccccc--ceEEEEEecccc---CcCHHHHHHH
Q psy17227 81 ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEHREKIT--QASIVFVNNFAF---GPTVDHALKE 154 (268)
Q Consensus 81 ~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~~~~~~--d~dvv~~~~~~~---~~~~~~~l~e 154 (268)
+++|||+|+.|+..+. +++.+ .. ...++.++++|+.+ +++..... +..++++.+.++ ..+....+++
T Consensus 90 ~~~~iDiS~~mL~~a~--~~l~~----~~-p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~ 162 (301)
T TIGR03438 90 RYVPIDISADALKESA--AALAA----DY-PQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRR 162 (301)
T ss_pred eEEEEECCHHHHHHHH--HHHHh----hC-CCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHH
Confidence 4999999998555443 32221 11 12368889999987 44433321 333455444432 2345667999
Q ss_pred HHhcCCCCcEEEEe
Q psy17227 155 RFQDLKDGARIVSS 168 (268)
Q Consensus 155 ~~r~LkpGG~~i~~ 168 (268)
++++|+|||.|++.
T Consensus 163 i~~~L~pgG~~lig 176 (301)
T TIGR03438 163 IRQLLGPGGGLLIG 176 (301)
T ss_pred HHHhcCCCCEEEEe
Confidence 99999999999875
No 55
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.50 E-value=1.5e-13 Score=115.01 Aligned_cols=104 Identities=23% Similarity=0.206 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc---ccccc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE---HREKI 131 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~---~~~~~ 131 (268)
+..++||||||+|.++..+|+..+...++|+|+++.++..+ ++++. ..+. .+++++++|+.+++ +++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a--~~~~~----~~~l--~ni~~i~~d~~~~~~~~~~~~- 86 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAA--NNKAN----KLGL--KNLHVLCGDANELLDKFFPDG- 86 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHH--HHHHH----HhCC--CCEEEEccCHHHHHHhhCCCC-
Confidence 45689999999999999999988766699999999744443 33332 2333 48999999998754 2222
Q ss_pred cceEEEEEeccccCcCH---------HHHHHHHHhcCCCCcEEEEe
Q psy17227 132 TQASIVFVNNFAFGPTV---------DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~~~---------~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+|.|+++..-.|++. ...++++.++|||||.|++.
T Consensus 87 -~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 87 -SLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred -ceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 4667777643233221 45789999999999999875
No 56
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.49 E-value=5.8e-13 Score=111.58 Aligned_cols=117 Identities=18% Similarity=0.314 Sum_probs=83.0
Q ss_pred CcHHHHH-HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227 39 TSFDLIS-RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL 117 (268)
Q Consensus 39 ~~~~~~~-~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~ 117 (268)
.+...+. .+++.+++.++.+|||+|||+|.++..+++..+..+|+|+|+|+.++..++ ++++ ..+. .++++
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~--~n~~----~~~~--~~v~~ 94 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIR--RNCD----RFGV--KNVEV 94 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH--HHHH----HhCC--CCeEE
Confidence 3444555 467888889999999999999999999887655556999999997555443 4333 2332 47999
Q ss_pred EEcCCCC-CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 118 VKGDFLT-EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 118 ~~gD~~~-l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+++|+.+ ++.... ..|.+++.. ..+....+.++++.|||||++++.
T Consensus 95 ~~~d~~~~~~~~~~--~~d~v~~~~---~~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 95 IEGSAPECLAQLAP--APDRVCIEG---GRPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred EECchHHHHhhCCC--CCCEEEEEC---CcCHHHHHHHHHHhcCCCeEEEEE
Confidence 9999865 221111 224455432 245678899999999999999986
No 57
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.49 E-value=7.7e-13 Score=111.08 Aligned_cols=119 Identities=17% Similarity=0.316 Sum_probs=86.2
Q ss_pred CcHHHHHH-HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEE
Q psy17227 39 TSFDLISR-MIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFR 116 (268)
Q Consensus 39 ~~~~~~~~-ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 116 (268)
.+...++. .+.++++.++.+|||+|||+|.+++.+|+..+ ..+|+|+|+++.+...++ ++++ ..+. ..+++
T Consensus 23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~--~n~~----~~g~-~~~v~ 95 (198)
T PRK00377 23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR--RNAE----KFGV-LNNIV 95 (198)
T ss_pred CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHH----HhCC-CCCeE
Confidence 44444544 45788999999999999999999999887654 346999999998555443 3333 2332 25899
Q ss_pred EEEcCCCCCc-ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 117 LVKGDFLTEE-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 117 ~~~gD~~~l~-~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++++|+.+.. ... ..+|.|+++. ...++...+.++.+.|||||++++.
T Consensus 96 ~~~~d~~~~l~~~~--~~~D~V~~~~--~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 96 LIKGEAPEILFTIN--EKFDRIFIGG--GSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred EEEechhhhHhhcC--CCCCEEEECC--CcccHHHHHHHHHHHcCCCcEEEEE
Confidence 9999997642 212 2456777753 3356788899999999999999874
No 58
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.48 E-value=5.2e-14 Score=113.20 Aligned_cols=97 Identities=21% Similarity=0.238 Sum_probs=70.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
..++.+|||||||+|.++..++. .|. +++|+|+|+.++.. .++.....+....+.+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~-~~~-~~~g~D~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-- 77 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAK-RGF-EVTGVDISPQMIEK------------------RNVVFDNFDAQDPPFPDG-- 77 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHH-TTS-EEEEEESSHHHHHH------------------TTSEEEEEECHTHHCHSS--
T ss_pred cCCCCEEEEEcCCCCHHHHHHHH-hCC-EEEEEECCHHHHhh------------------hhhhhhhhhhhhhhcccc--
Confidence 67889999999999999998855 567 49999999852211 123333333334444444
Q ss_pred ceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227 133 QASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSKSF 171 (268)
Q Consensus 133 d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~~~ 171 (268)
.+|+|+++.. .|.+++...++++.+.|||||.++++.+.
T Consensus 78 ~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 78 SFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred chhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4566766655 67889999999999999999999987443
No 59
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=3.1e-13 Score=119.87 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=75.0
Q ss_pred HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc
Q psy17227 49 DQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR 128 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~ 128 (268)
..+...++.+|||||||+|..+..+|+. |.. |+|+|+|+.++..++ ++++ ..+ .++++.++|+...++
T Consensus 114 ~~~~~~~~~~vLDlGcG~G~~~~~la~~-g~~-V~avD~s~~ai~~~~--~~~~----~~~---l~v~~~~~D~~~~~~- 181 (287)
T PRK12335 114 EAVQTVKPGKALDLGCGQGRNSLYLALL-GFD-VTAVDINQQSLENLQ--EIAE----KEN---LNIRTGLYDINSASI- 181 (287)
T ss_pred HHhhccCCCCEEEeCCCCCHHHHHHHHC-CCE-EEEEECCHHHHHHHH--HHHH----HcC---CceEEEEechhcccc-
Confidence 3333334458999999999999998874 665 999999997555443 3332 222 278999999987655
Q ss_pred ccccceEEEEEeccc-cC--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 129 EKITQASIVFVNNFA-FG--PTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 129 ~~~~d~dvv~~~~~~-~~--~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++ .+|+|++..++ |. ++....++++.++|||||.+++.
T Consensus 182 ~~--~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 182 QE--EYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred cC--CccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 23 35677776553 33 35677899999999999996654
No 60
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.48 E-value=2.9e-13 Score=114.20 Aligned_cols=103 Identities=14% Similarity=0.266 Sum_probs=74.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
+.++.+|||||||+|..+..++...+...++|||+|+.|+..|+ ++ ..++.++++|+.+ |++++.
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~--~~-----------~~~~~~~~~d~~~-~~~~~s- 105 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAK--AY-----------LPNINIIQGSLFD-PFKDNF- 105 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHH--hh-----------CCCCcEEEeeccC-CCCCCC-
Confidence 45778899999999999999888755455999999998555543 11 2367889999988 766554
Q ss_pred ceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227 133 QASIVFVNNF-AFGP--TVDHALKERFQDLKDGARIVSSKSFCP 173 (268)
Q Consensus 133 d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~~i~~~~~~~ 173 (268)
+|+|+++.+ +|.+ ++...+++++|++ ++.+++.+.+.|
T Consensus 106 -fD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 106 -FDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred -EEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 567777766 3542 3677889999997 456666644443
No 61
>PLN03075 nicotianamine synthase; Provisional
Probab=99.47 E-value=9.2e-13 Score=116.05 Aligned_cols=115 Identities=10% Similarity=0.047 Sum_probs=82.6
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHHH-HHHH-HHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQVV-LQVA-AATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~~-~~la-~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
+++..+...++++|+|||||.|.++ +.++ ..++..+++|+|++++++..|+ +.+++ ..+. ..+++|.++|+.
T Consensus 114 ~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar--~~~~~---~~gL-~~rV~F~~~Da~ 187 (296)
T PLN03075 114 DLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVAR--RLVSS---DPDL-SKRMFFHTADVM 187 (296)
T ss_pred HHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH--HHhhh---ccCc-cCCcEEEECchh
Confidence 4555555557889999999988553 3333 3456667999999998655554 33321 1233 247999999998
Q ss_pred CCcccccccceEEEEEeccccC--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 124 TEEHREKITQASIVFVNNFAFG--PTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 124 ~l~~~~~~~d~dvv~~~~~~~~--~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.+.. ..++|+||+.+.+++ ++..+.+.++.+.|+|||.+++-
T Consensus 188 ~~~~~--l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 188 DVTES--LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred hcccc--cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 85421 235789999866555 67899999999999999999985
No 62
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.47 E-value=5.6e-13 Score=112.89 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=76.6
Q ss_pred HHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 45 SRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 45 ~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
.++.++++ ++++.+|||||||+|..+..+++..+. ..|+|||+++. . ...+++++++|+
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-------~------------~~~~v~~i~~D~ 100 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-------D------------PIVGVDFLQGDF 100 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-------c------------CCCCcEEEecCC
Confidence 45666666 588999999999999999999887653 36999999981 1 124699999999
Q ss_pred CCCc--------ccccccceEEEEEeccccC-cC-----------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 123 LTEE--------HREKITQASIVFVNNFAFG-PT-----------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 123 ~~l~--------~~~~~~d~dvv~~~~~~~~-~~-----------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+.+ +.+ ..+|+|+++...++ .+ ...++.+++++|||||.|++.
T Consensus 101 ~~~~~~~~i~~~~~~--~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 101 RDELVLKALLERVGD--SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CChHHHHHHHHHhCC--CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9864 322 24678888754322 21 145789999999999999985
No 63
>PTZ00146 fibrillarin; Provisional
Probab=99.46 E-value=6.5e-13 Score=116.63 Aligned_cols=108 Identities=18% Similarity=0.239 Sum_probs=76.6
Q ss_pred HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-
Q psy17227 49 DQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE- 126 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~- 126 (268)
+.++++++++|||||||+|..+.++|...+. ..|+++|+|+.+. ..+.+.+.+ ..|+.++.+|+.+..
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~--~dLl~~ak~--------r~NI~~I~~Da~~p~~ 195 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG--RDLTNMAKK--------RPNIVPIIEDARYPQK 195 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH--HHHHHHhhh--------cCCCEEEECCccChhh
Confidence 5567899999999999999999999998753 3699999997532 122222221 248999999987521
Q ss_pred ccccccceEEEEEeccccCcCH-HHHHHHHHhcCCCCcEEEEe
Q psy17227 127 HREKITQASIVFVNNFAFGPTV-DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 ~~~~~~d~dvv~~~~~~~~~~~-~~~l~e~~r~LkpGG~~i~~ 168 (268)
+......+|+|+++.. .++. ...+.++.+.|||||.|++.
T Consensus 196 y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 196 YRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred hhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEE
Confidence 1111124688988764 2443 34456889999999999985
No 64
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.45 E-value=7.4e-13 Score=109.35 Aligned_cols=108 Identities=16% Similarity=0.194 Sum_probs=76.9
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
.+...+...++.+|||+|||+|.++..++...+ +|+|+|+|+.+...++ ++++ ..+ .+++++++|+.+.
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~--~~~~----~~~---~~~~~~~~d~~~~ 78 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELR--ENAK----LNN---VGLDVVMTDLFKG 78 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHH--HHHH----HcC---CceEEEEcccccc
Confidence 344555566778999999999999998887543 5999999998555543 3332 122 3689999998775
Q ss_pred cccccccceEEEEEecccc-CcC---------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 EHREKITQASIVFVNNFAF-GPT---------------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~~~~-~~~---------------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+ .. .+|+|+++..++ .++ ....+.++.++|||||++++.
T Consensus 79 ~--~~--~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~ 139 (179)
T TIGR00537 79 V--RG--KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI 139 (179)
T ss_pred c--CC--cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence 4 22 457788876543 221 244578888999999999876
No 65
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.45 E-value=9.6e-13 Score=107.90 Aligned_cols=114 Identities=16% Similarity=0.192 Sum_probs=80.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
..-+++.+...++.+|||+|||+|.+++.+++..+..+|+++|+|+.++..++ ++++ ..+. .+++++++|..
T Consensus 20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~--~n~~----~n~~--~~v~~~~~d~~ 91 (170)
T PF05175_consen 20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK--RNAE----RNGL--ENVEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH--HHHH----HTTC--TTEEEEESSTT
T ss_pred HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH--HHHH----hcCc--ccccccccccc
Confidence 34455555555788999999999999999998877757999999998665554 3333 2332 23999999997
Q ss_pred CCcccccccceEEEEEeccccCcC------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 124 TEEHREKITQASIVFVNNFAFGPT------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 124 ~l~~~~~~~d~dvv~~~~~~~~~~------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+... + ..+|+|++|..++... ..+.+.+..+.|||||.+++.
T Consensus 92 ~~~~-~--~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 92 EALP-D--GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp TTCC-T--TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccc-c--cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 6332 2 3578999997765443 344567778999999999653
No 66
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.45 E-value=4.9e-13 Score=117.18 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=77.4
Q ss_pred HHHcCCCCCCEEEEEcCCCCH----HHHHHHHHhC-----CcEEEEEeCCCChhHHHHHHH----HHH--------HHHH
Q psy17227 48 IDQINATPDDVFVDLGSGVGQ----VVLQVAAATG-----CKICWGVEKADLPAKYAEMHT----VFK--------RWMQ 106 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG~G~----~~~~la~~~~-----~~~v~GiD~s~~~~~~a~~~~----~~~--------~~~~ 106 (268)
++.....++.+|+|+|||+|. +++.++...+ ..+|+|+|+|+.|+..|+... .++ ++..
T Consensus 92 ~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~ 171 (264)
T smart00138 92 IASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFS 171 (264)
T ss_pred HHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEE
Confidence 333334566799999999996 5555555433 236999999998666665210 000 0000
Q ss_pred Hhcc-------ccccEEEEEcCCCCCcccccccceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 107 WYGK-------RHGEFRLVKGDFLTEEHREKITQASIVFVNNF-AFGP--TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 107 ~~~~-------~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
..+. -..+|+|.++|+.+.+++++ .+|+|++.++ +|.+ +...+++++++.|||||.+++.
T Consensus 172 ~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~--~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 172 RVEDKYRVKPELKERVRFAKHNLLAESPPLG--DFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred eCCCeEEEChHHhCcCEEeeccCCCCCCccC--CCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 0000 01379999999999876444 4567777555 4443 4567899999999999999985
No 67
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.45 E-value=4.5e-13 Score=126.80 Aligned_cols=113 Identities=15% Similarity=0.242 Sum_probs=83.3
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
..+++.+...++.+|||||||+|.++..+++. +. +|+|+|+|+.++..++ +. .+ ...+++++++|+.+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~-~v~giD~s~~~l~~a~--~~-------~~-~~~~i~~~~~d~~~ 94 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AG-QVIALDFIESVIKKNE--SI-------NG-HYKNVKFMCADVTS 94 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CC-EEEEEeCCHHHHHHHH--HH-------hc-cCCceEEEEecccc
Confidence 45677777778889999999999999999876 33 4999999997544322 11 11 13589999999974
Q ss_pred --CcccccccceEEEEEecc-ccCcC--HHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227 125 --EEHREKITQASIVFVNNF-AFGPT--VDHALKERFQDLKDGARIVSSKSF 171 (268)
Q Consensus 125 --l~~~~~~~d~dvv~~~~~-~~~~~--~~~~l~e~~r~LkpGG~~i~~~~~ 171 (268)
+|++++ .+|+|+++.. +|.++ ....++++.++|||||++++.+..
T Consensus 95 ~~~~~~~~--~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 95 PDLNISDG--SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred cccCCCCC--CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 455544 4677877655 44444 577899999999999999987543
No 68
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.44 E-value=1.6e-12 Score=118.82 Aligned_cols=117 Identities=11% Similarity=0.050 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc-cccEEEEEcC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR-HGEFRLVKGD 121 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~i~~~~gD 121 (268)
..+-+++.++...+.+|||||||+|.+++.+++..+..+|+++|+|+.++..++ ++++. .+.. ..+++++.+|
T Consensus 216 GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~--~N~~~----n~~~~~~~v~~~~~D 289 (378)
T PRK15001 216 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSR--LNVET----NMPEALDRCEFMINN 289 (378)
T ss_pred HHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHHH----cCcccCceEEEEEcc
Confidence 445688888776667999999999999999998887767999999987555554 44332 1211 1378999999
Q ss_pred CCCCcccccccceEEEEEeccccCc------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 122 FLTEEHREKITQASIVFVNNFAFGP------TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 122 ~~~l~~~~~~~d~dvv~~~~~~~~~------~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.+.. +. ..+|+|++|..+|.. ...+.+..+++.|||||.+++.
T Consensus 290 ~l~~~-~~--~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 290 ALSGV-EP--FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred ccccC-CC--CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 86521 11 257899998776542 1345678888999999999875
No 69
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.43 E-value=1.4e-12 Score=118.83 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=82.6
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
..+++.+....+..+||||||+|.++..+|+..+...++|||+++.++..+ .+++. ..+. .|+.++++|+..
T Consensus 112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a--~~ka~----~~gL--~NV~~i~~DA~~ 183 (390)
T PRK14121 112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQV--LKQIE----LLNL--KNLLIINYDARL 183 (390)
T ss_pred HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHH--HHHHH----HcCC--CcEEEEECCHHH
Confidence 456777766777899999999999999999998766699999998744333 23332 2333 589999999976
Q ss_pred C--cccccccceEEEEEeccccCcCH-------HHHHHHHHhcCCCCcEEEEe
Q psy17227 125 E--EHREKITQASIVFVNNFAFGPTV-------DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l--~~~~~~~d~dvv~~~~~~~~~~~-------~~~l~e~~r~LkpGG~~i~~ 168 (268)
+ +++++ .+|.|+++-...|+.. ...+.++.|+|||||.+.+.
T Consensus 184 ll~~~~~~--s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 184 LLELLPSN--SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred hhhhCCCC--ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 4 24443 4677877633333321 45689999999999998864
No 70
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.43 E-value=9.7e-13 Score=111.67 Aligned_cols=123 Identities=14% Similarity=0.110 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHh---c-cccccEEE
Q psy17227 42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWY---G-KRHGEFRL 117 (268)
Q Consensus 42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~---~-~~~~~i~~ 117 (268)
..+..++..+.+.++.+|||+|||.|.-++.+|. .|.. |+|||+|+.++..+............. . ....++++
T Consensus 21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~-~G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 98 (213)
T TIGR03840 21 PLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAE-QGHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEI 98 (213)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHh-CCCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEE
Confidence 4555666665556778999999999999999987 5887 999999997544321100000000000 0 01247999
Q ss_pred EEcCCCCCcccccccceEEEEEecc-ccC-cC-HHHHHHHHHhcCCCCcEEEE
Q psy17227 118 VKGDFLTEEHREKITQASIVFVNNF-AFG-PT-VDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 118 ~~gD~~~l~~~~~~~d~dvv~~~~~-~~~-~~-~~~~l~e~~r~LkpGG~~i~ 167 (268)
+++|+.+++... ...+|.|+-..+ +|. ++ ....+..+.+.|||||++++
T Consensus 99 ~~~D~~~~~~~~-~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 99 FCGDFFALTAAD-LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred EEccCCCCCccc-CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 999999877421 123455554332 333 33 45568999999999998554
No 71
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.42 E-value=2.9e-12 Score=115.84 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=85.7
Q ss_pred CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227 39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV 118 (268)
Q Consensus 39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~ 118 (268)
..+.....++..++++++++|||+|||+|.+++.++. .+.. ++|+|+++.|+..++ .+++ ..|. .+++++
T Consensus 166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~-v~g~Di~~~~~~~a~--~nl~----~~g~--~~i~~~ 235 (329)
T TIGR01177 166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAK-VIGCDIDWKMVAGAR--INLE----HYGI--EDFFVK 235 (329)
T ss_pred CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCe-EEEEcCCHHHHHHHH--HHHH----HhCC--CCCeEE
Confidence 3344455677777899999999999999999988655 5665 999999998555543 3443 2343 248999
Q ss_pred EcCCCCCcccccccceEEEEEeccccC-----c----C-HHHHHHHHHhcCCCCcEEEEe
Q psy17227 119 KGDFLTEEHREKITQASIVFVNNFAFG-----P----T-VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 119 ~gD~~~l~~~~~~~d~dvv~~~~~~~~-----~----~-~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++|+.++|+.++ .+|+|+++..+.. . + ....+.++.++|||||++++.
T Consensus 236 ~~D~~~l~~~~~--~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 236 RGDATKLPLSSE--SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred ecchhcCCcccC--CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 999999987654 3567887643211 1 1 356788899999999999875
No 72
>PRK14967 putative methyltransferase; Provisional
Probab=99.42 E-value=2.6e-12 Score=109.86 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
.+..++..+++.++++|||+|||+|.+++.+++. +..+++|+|+|+.++..++ ++++. .+ .+++++++|+
T Consensus 24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~--~n~~~----~~---~~~~~~~~d~ 93 (223)
T PRK14967 24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSAR--LNALL----AG---VDVDVRRGDW 93 (223)
T ss_pred HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHH--HHHHH----hC---CeeEEEECch
Confidence 3456667778889999999999999999988774 5546999999997555543 33331 22 2688999999
Q ss_pred CCCcccccccceEEEEEeccccCc-C---------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 123 LTEEHREKITQASIVFVNNFAFGP-T---------------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 123 ~~l~~~~~~~d~dvv~~~~~~~~~-~---------------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+. +++. .+|+|+++..++.. . ....+.++++.|||||++++.
T Consensus 94 ~~~-~~~~--~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 94 ARA-VEFR--PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred hhh-ccCC--CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 763 2232 46788887543211 1 344567888999999999974
No 73
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.41 E-value=2.5e-12 Score=106.82 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=73.2
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
.+++.++.-++.++||||||.|+.++.+|++ |.. |+++|+|+. .++++++.++ ..+ -+|+..+.|+.+.
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~-VtAvD~s~~--al~~l~~~a~----~~~---l~i~~~~~Dl~~~ 89 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFD-VTAVDISPV--ALEKLQRLAE----EEG---LDIRTRVADLNDF 89 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-E-EEEEESSHH--HHHHHHHHHH----HTT----TEEEEE-BGCCB
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCe-EEEEECCHH--HHHHHHHHHh----hcC---ceeEEEEecchhc
Confidence 4555566666779999999999999999884 887 999999986 3433333332 222 3699999999887
Q ss_pred cccccccceEEEEEecc---ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 EHREKITQASIVFVNNF---AFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~~---~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.++. ++|+|++..+ ++.+.....+..+-..++|||.+++.
T Consensus 90 ~~~~---~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 90 DFPE---EYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp S-TT---TEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccC---CcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 7643 4566665322 33344566788888999999998763
No 74
>KOG4300|consensus
Probab=99.40 E-value=1.3e-12 Score=107.63 Aligned_cols=105 Identities=12% Similarity=0.019 Sum_probs=77.2
Q ss_pred CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEE-EEEcCCCCCc-ccccccce
Q psy17227 57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFR-LVKGDFLTEE-HREKITQA 134 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~-~~~gD~~~l~-~~~~~~d~ 134 (268)
..||+||||||..--..--. +..+||++|.++.|..++. +.+. +. ++.++. |+.++.+++| +++.+.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~--ks~~----E~--k~~~~~~fvva~ge~l~~l~d~s~-- 146 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIAD--KSAA----EK--KPLQVERFVVADGENLPQLADGSY-- 146 (252)
T ss_pred cceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHH--HHHh----hc--cCcceEEEEeechhcCcccccCCe--
Confidence 34899999999986543322 3345999999998766654 2222 11 355777 9999999999 666554
Q ss_pred EEEEE-eccccCcCHHHHHHHHHhcCCCCcEEEEeCCCC
Q psy17227 135 SIVFV-NNFAFGPTVDHALKERFQDLKDGARIVSSKSFC 172 (268)
Q Consensus 135 dvv~~-~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~~ 172 (268)
|+|++ ...|-..++.+.|+++.|+|+|||++++.++..
T Consensus 147 DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 147 DTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred eeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 44544 344667899999999999999999999986654
No 75
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.40 E-value=7.6e-12 Score=106.07 Aligned_cols=112 Identities=19% Similarity=0.228 Sum_probs=79.2
Q ss_pred cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227 40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK 119 (268)
Q Consensus 40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 119 (268)
.+.....++..+.+.++.+|||||||+|..+..+++..+ +++|+|+++.++..+ ++++. ..+ ..++++++
T Consensus 63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a--~~~~~----~~~--~~~v~~~~ 132 (212)
T PRK00312 63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEA--KRRLK----QLG--LHNVSVRH 132 (212)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHH--HHHHH----HCC--CCceEEEE
Confidence 445567788889999999999999999999987777643 499999998744443 34333 233 24699999
Q ss_pred cCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 120 GDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 120 gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|+.+...... .+|+|+++.... .....+++.|||||++++.
T Consensus 133 ~d~~~~~~~~~--~fD~I~~~~~~~-----~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 133 GDGWKGWPAYA--PFDRILVTAAAP-----EIPRALLEQLKEGGILVAP 174 (212)
T ss_pred CCcccCCCcCC--CcCEEEEccCch-----hhhHHHHHhcCCCcEEEEE
Confidence 99866322222 356777764322 2245678999999999985
No 76
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.40 E-value=3.6e-12 Score=108.58 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=77.2
Q ss_pred HHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227 44 ISRMIDQIN--ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD 121 (268)
Q Consensus 44 ~~~ll~~l~--~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD 121 (268)
...+++.+. ..++.+|||||||+|.++..++.. +. +++|+|+|+.++..++ +++. ..+. ..+++|.++|
T Consensus 42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~-~v~gvD~s~~~i~~a~--~~~~----~~~~-~~~i~~~~~d 112 (219)
T TIGR02021 42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GA-IVKAVDISEQMVQMAR--NRAQ----GRDV-AGNVEFEVND 112 (219)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CC-EEEEEECCHHHHHHHH--HHHH----hcCC-CCceEEEECC
Confidence 344666665 567899999999999999998874 44 4999999998655554 3322 1121 2479999999
Q ss_pred CCCCcccccccceEEEEEe-ccccCc--CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 122 FLTEEHREKITQASIVFVN-NFAFGP--TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 122 ~~~l~~~~~~~d~dvv~~~-~~~~~~--~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.+++ +.+ |+|++. .++|.+ +....+.++.+++++|+.+.+.
T Consensus 113 ~~~~~---~~f--D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 113 LLSLC---GEF--DIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hhhCC---CCc--CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 98876 334 555554 444543 3667789999999877665553
No 77
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.39 E-value=7.8e-13 Score=101.14 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=73.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--ccccccc
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKITQ 133 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~~d 133 (268)
|.+|||+|||+|.+++.+++.. ..+++|+|+++..+.+++ .++. ..+. ..+++++++|+.+.. +.+ ..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~--~~~~----~~~~-~~~~~~~~~D~~~~~~~~~~--~~ 70 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELAR--RNLP----RNGL-DDRVEVIVGDARDLPEPLPD--GK 70 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHH--HHCH----HCTT-TTTEEEEESHHHHHHHTCTT--T-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHH--HHHH----HccC-CceEEEEECchhhchhhccC--ce
Confidence 5689999999999999888765 456999999997655554 3332 2222 357999999998876 333 45
Q ss_pred eEEEEEeccccCc---------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGP---------TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~---------~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|+|++|..++.. .....++++.+.|||||.+++.
T Consensus 71 ~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 71 FDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 7889988765431 1245578888999999999874
No 78
>KOG1271|consensus
Probab=99.39 E-value=3.1e-12 Score=103.46 Aligned_cols=147 Identities=19% Similarity=0.230 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhhcCCccccccCCCCCCC---CcccCcH-HHHHHHHHHcC---CCC-CCEEEEEcCCCCHHHHHHHHHhC
Q psy17227 7 LRHIIQQTYNQSVTEPEKLNVYQPFSPF---VYGETSF-DLISRMIDQIN---ATP-DDVFVDLGSGVGQVVLQVAAATG 78 (268)
Q Consensus 7 ~~~~~~~~y~~~~~~~~~~~~y~~~~~~---~~g~~~~-~~~~~ll~~l~---~~~-~~~vLDiGCG~G~~~~~la~~~~ 78 (268)
++.--++.|.+ .++.|..+... ++|+... +.+..+..... +.+ .++|||+|||+|.+++.+++.--
T Consensus 17 tK~yWD~~Y~~------El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf 90 (227)
T KOG1271|consen 17 TKSYWDAAYEL------ELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF 90 (227)
T ss_pred hHHHHHHHHHH------HHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC
Confidence 45556777877 55556433221 4554332 23344444433 333 34899999999999999998632
Q ss_pred CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEE----ecc-ccCcCHH----
Q psy17227 79 CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFV----NNF-AFGPTVD---- 149 (268)
Q Consensus 79 ~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~----~~~-~~~~~~~---- 149 (268)
....+|+|.|+.++.+|+ ..+++ .+. ...|+|.+.|+.+..+.. .++|+|.= .++ +++..+.
T Consensus 91 ~~~L~GvDYs~~AV~LA~--niAe~----~~~-~n~I~f~q~DI~~~~~~~--~qfdlvlDKGT~DAisLs~d~~~~r~~ 161 (227)
T KOG1271|consen 91 QSKLTGVDYSEKAVELAQ--NIAER----DGF-SNEIRFQQLDITDPDFLS--GQFDLVLDKGTLDAISLSPDGPVGRLV 161 (227)
T ss_pred CCCccccccCHHHHHHHH--HHHHh----cCC-CcceeEEEeeccCCcccc--cceeEEeecCceeeeecCCCCccccee
Confidence 223899999999888865 22221 232 235999999999865433 34566652 222 2222222
Q ss_pred HHHHHHHhcCCCCcEEEEe
Q psy17227 150 HALKERFQDLKDGARIVSS 168 (268)
Q Consensus 150 ~~l~e~~r~LkpGG~~i~~ 168 (268)
..+..+-+.|+|||+|+++
T Consensus 162 ~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271|consen 162 VYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred eehhhHhhccCCCcEEEEE
Confidence 2345666899999999987
No 79
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.37 E-value=6.8e-12 Score=113.71 Aligned_cols=112 Identities=9% Similarity=0.135 Sum_probs=80.5
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
...+++.+......+|||+|||+|.+++.+++..+..+|+|+|+|+.++..++ +++++ .+. ..+++.+|+.
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~--~nl~~----n~l---~~~~~~~D~~ 255 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSR--ATLAA----NGL---EGEVFASNVF 255 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHHH----cCC---CCEEEEcccc
Confidence 34567777655566899999999999999998877656999999987555543 33332 222 4577888876
Q ss_pred CCcccccccceEEEEEeccccC------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 124 TEEHREKITQASIVFVNNFAFG------PTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 124 ~l~~~~~~~d~dvv~~~~~~~~------~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.. . ..+|+|++|..+|. ......+.++.+.|||||.+++.
T Consensus 256 ~~~--~--~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 256 SDI--K--GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred ccc--C--CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 521 2 24688988877664 12456688999999999999764
No 80
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.37 E-value=3.1e-12 Score=109.74 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=83.9
Q ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
+..+.......+|||||||+|.+++.+|++....+++|||+++.+...|+ ++.+ ..+. ..+++++++|+.++.
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~--~nv~----ln~l-~~ri~v~~~Di~~~~ 108 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQ--RNVA----LNPL-EERIQVIEADIKEFL 108 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHH--HHHH----hCcc-hhceeEehhhHHHhh
Confidence 44555666688999999999999999999866566999999998666654 3322 2222 368999999999876
Q ss_pred ccccccceEEEEEeccccCcC-------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 HREKITQASIVFVNNFAFGPT-------------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 ~~~~~~d~dvv~~~~~~~~~~-------------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
..-...++|+|+||..++... +...++...+.|||||.+.+.
T Consensus 109 ~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 109 KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 433333578999998765422 333455556799999999875
No 81
>PRK14968 putative methyltransferase; Provisional
Probab=99.36 E-value=1.1e-11 Score=102.54 Aligned_cols=113 Identities=21% Similarity=0.300 Sum_probs=77.6
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
..+++.+...++.+|||+|||+|.++..++.. +.. ++|+|+|+.+...++ ++++ ..+....++.++++|+.+
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~-v~~~D~s~~~~~~a~--~~~~----~~~~~~~~~~~~~~d~~~ 84 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKK-VVGVDINPYAVECAK--CNAK----LNNIRNNGVEVIRSDLFE 84 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhh-cce-EEEEECCHHHHHHHH--HHHH----HcCCCCcceEEEeccccc
Confidence 33455555578889999999999999999887 555 999999997555543 3332 223322238999999876
Q ss_pred CcccccccceEEEEEeccccCc----------------------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EEHREKITQASIVFVNNFAFGP----------------------TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~~~~~~~d~dvv~~~~~~~~~----------------------~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
. +.+. .+|+|+++..++.. .....++++.++|||||.+++.
T Consensus 85 ~-~~~~--~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 85 P-FRGD--KFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred c-cccc--CceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3 2232 46778776543321 1344578889999999998865
No 82
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.36 E-value=5.8e-12 Score=109.57 Aligned_cols=96 Identities=22% Similarity=0.307 Sum_probs=65.9
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
+.++.+|||+|||+|.+++.+++ .|..+|+|+|+|+.++..++ ++++. .+. ..++.+..+|.
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~--~n~~~----~~~-~~~~~~~~~~~---------- 178 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAAR--ENAEL----NGV-ELNVYLPQGDL---------- 178 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHH--HHHHH----cCC-CceEEEccCCC----------
Confidence 46889999999999999987655 56666999999997555543 33331 222 12344444432
Q ss_pred ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+|+|++|.. .......+.++.++|||||.++++
T Consensus 179 ~fD~Vvani~--~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 179 KADVIVANIL--ANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred CcCEEEEcCc--HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 3567877633 223456678999999999999986
No 83
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.36 E-value=1e-11 Score=110.26 Aligned_cols=107 Identities=14% Similarity=0.203 Sum_probs=73.8
Q ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
+++.+ ..++++|||+|||+|.+++.+++ .|..+|+|+|+|+.++..++ +++. ..+. ..++.+..+|....
T Consensus 152 ~l~~~-~~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~--~n~~----~n~~-~~~~~~~~~~~~~~- 221 (288)
T TIGR00406 152 WLEDL-DLKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESAR--KNAE----LNQV-SDRLQVKLIYLEQP- 221 (288)
T ss_pred HHHhh-cCCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHH--HHHH----HcCC-CcceEEEecccccc-
Confidence 33443 45789999999999999987765 56667999999997555543 3333 2232 23577777764322
Q ss_pred ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+. .+|+|++|.. .......+.++.+.|||||.++++
T Consensus 222 -~~~--~fDlVvan~~--~~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 222 -IEG--KADVIVANIL--AEVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred -cCC--CceEEEEecC--HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 222 4678888743 233556788999999999999986
No 84
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.35 E-value=1.2e-11 Score=110.98 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=81.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227 41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK 119 (268)
Q Consensus 41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 119 (268)
+.....+++.++++++++|||||||+|.++..+++..+. ..|+|+|+++.++..|+ ++++ ..|. .++.+++
T Consensus 66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar--~~l~----~~g~--~nV~~i~ 137 (322)
T PRK13943 66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK--RNVR----RLGI--ENVIFVC 137 (322)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH--HHHH----HcCC--CcEEEEe
Confidence 445567888889999999999999999999999987654 35999999997555443 3333 2332 4799999
Q ss_pred cCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 120 GDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 120 gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|+.+.+.... .+|+|++.... ......+++.|||||++++.
T Consensus 138 gD~~~~~~~~~--~fD~Ii~~~g~-----~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 138 GDGYYGVPEFA--PYDVIFVTVGV-----DEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred CChhhcccccC--CccEEEECCch-----HHhHHHHHHhcCCCCEEEEE
Confidence 99877553332 35677764321 22234567899999998874
No 85
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.35 E-value=1e-11 Score=105.83 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhc----cccccEEE
Q psy17227 42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYG----KRHGEFRL 117 (268)
Q Consensus 42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~----~~~~~i~~ 117 (268)
..+...+..+.+.++.+|||+|||.|..+..+|. .|+. |+|||+|+.++..+.............+ ....+|++
T Consensus 24 ~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~-~G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~ 101 (218)
T PRK13255 24 PLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAE-QGHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITI 101 (218)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHh-CCCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEE
Confidence 4455566656667788999999999999999987 5887 9999999974443210000000000000 01247999
Q ss_pred EEcCCCCCcccccccceEEEEEecc-ccC-cC-HHHHHHHHHhcCCCCcEEE
Q psy17227 118 VKGDFLTEEHREKITQASIVFVNNF-AFG-PT-VDHALKERFQDLKDGARIV 166 (268)
Q Consensus 118 ~~gD~~~l~~~~~~~d~dvv~~~~~-~~~-~~-~~~~l~e~~r~LkpGG~~i 166 (268)
.++|+.+++... ...+|.|+-..+ ++. ++ ....+..+.+.|||||+++
T Consensus 102 ~~~D~~~l~~~~-~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 102 YCGDFFALTAAD-LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred EECcccCCCccc-CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEE
Confidence 999999986322 224566664433 332 33 4566889999999998644
No 86
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.34 E-value=2e-11 Score=105.62 Aligned_cols=116 Identities=14% Similarity=0.175 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227 41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG 120 (268)
Q Consensus 41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g 120 (268)
...+..+++.+. ..+.+|||+|||+|.++..++...+...++|+|+|+.++..++ +++. ..+. .+++++++
T Consensus 74 ~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~--~~~~----~~~~--~~~~~~~~ 144 (251)
T TIGR03534 74 EELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVAR--KNAA----RLGL--DNVTFLQS 144 (251)
T ss_pred HHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHH----HcCC--CeEEEEEC
Confidence 344555666654 3456899999999999999998776667999999998555544 3332 2232 37999999
Q ss_pred CCCCCcccccccceEEEEEeccccCc--------C-------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 121 DFLTEEHREKITQASIVFVNNFAFGP--------T-------------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 121 D~~~l~~~~~~~d~dvv~~~~~~~~~--------~-------------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
|+.+ ++++ ..+|+|++|..++.. + ....+.++.+.|||||++++.
T Consensus 145 d~~~-~~~~--~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 145 DWFE-PLPG--GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred chhc-cCcC--CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9976 3333 346788886543321 1 124467888999999999985
No 87
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.34 E-value=4.7e-12 Score=107.01 Aligned_cols=115 Identities=20% Similarity=0.279 Sum_probs=78.9
Q ss_pred CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE
Q psy17227 39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL 117 (268)
Q Consensus 39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~ 117 (268)
+.+..+.++++.+.++||++|||||||+|..+..+|...+.. .|++||+.+..... ++++++ ..+ ..++++
T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~--A~~~l~----~~~--~~nv~~ 127 (209)
T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAER--ARRNLA----RLG--IDNVEV 127 (209)
T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHH--HHHHHH----HHT--THSEEE
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHH--HHHHHH----Hhc--cCceeE
Confidence 335677899999999999999999999999999999887754 59999999964333 334443 233 348999
Q ss_pred EEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 118 VKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 118 ~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+++|...... +. ..+|.|+++.... ..-..+++.||+||++|+-
T Consensus 128 ~~gdg~~g~~-~~-apfD~I~v~~a~~-----~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 128 VVGDGSEGWP-EE-APFDRIIVTAAVP-----EIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp EES-GGGTTG-GG--SEEEEEESSBBS-----S--HHHHHTEEEEEEEEEE
T ss_pred EEcchhhccc-cC-CCcCEEEEeeccc-----hHHHHHHHhcCCCcEEEEE
Confidence 9999875321 21 2467888865432 2234577889999999984
No 88
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.34 E-value=1.3e-11 Score=102.82 Aligned_cols=102 Identities=20% Similarity=0.282 Sum_probs=73.9
Q ss_pred HHHHHc-CCCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 46 RMIDQI-NATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 46 ~ll~~l-~~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
++.+++ .+.++++|||+|||+|.++..+++.. +..+++|+|+|+.+ . ..+++++++|+.
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~---------~~~i~~~~~d~~ 82 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------P---------IENVDFIRGDFT 82 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------c---------CCCceEEEeeCC
Confidence 344444 56889999999999999999888876 34469999999841 0 136889999998
Q ss_pred CCc--------ccccccceEEEEEeccc-----cCcC-------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 124 TEE--------HREKITQASIVFVNNFA-----FGPT-------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 124 ~l~--------~~~~~~d~dvv~~~~~~-----~~~~-------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.+ ++. ..+|+|+++... +..+ ....+.+++++|||||++++.
T Consensus 83 ~~~~~~~l~~~~~~--~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 83 DEEVLNKIRERVGD--DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred ChhHHHHHHHHhCC--CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 754 122 246788875421 1111 256789999999999999984
No 89
>PRK06202 hypothetical protein; Provisional
Probab=99.34 E-value=9.9e-12 Score=106.80 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=70.4
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHh---CC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227 52 NATPDDVFVDLGSGVGQVVLQVAAAT---GC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH 127 (268)
Q Consensus 52 ~~~~~~~vLDiGCG~G~~~~~la~~~---~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~ 127 (268)
...++.+|||||||+|.++..+++.. |. .+++|+|+|+.|+..++ ++. ...++++.+++..++++
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~--~~~---------~~~~~~~~~~~~~~l~~ 125 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFAR--ANP---------RRPGVTFRQAVSDELVA 125 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHH--hcc---------ccCCCeEEEEecccccc
Confidence 34577899999999999998887642 32 25999999998655543 211 12357788888777776
Q ss_pred cccccceEEEEEecc-ccCcC--HHHHHHHHHhcCCCCcEEEEe
Q psy17227 128 REKITQASIVFVNNF-AFGPT--VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 128 ~~~~~d~dvv~~~~~-~~~~~--~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+. .+|+|+++.. +|.++ ....+++++|+++ |.+++.
T Consensus 126 ~~~--~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 126 EGE--RFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred cCC--CccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 444 4566777655 45555 4578999999998 455554
No 90
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.34 E-value=1.5e-12 Score=107.09 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=72.9
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc-cccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE-HREK 130 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~-~~~~ 130 (268)
++||.+|||||||.|.+..++....++. .+|||++++ .+.++ -. ..+.++++|+.+ ++ |+++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~-g~GvEid~~--~v~~c--------v~-----rGv~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVD-GYGVEIDPD--NVAAC--------VA-----RGVSVIQGDLDEGLADFPDQ 74 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCe-EEEEecCHH--HHHHH--------HH-----cCCCEEECCHHHhHhhCCCC
Confidence 6889999999999999999887766665 899999985 33221 11 257799999986 44 7788
Q ss_pred ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+||+ ||.+....+..++...+.|+.|+ |...|++
T Consensus 75 sFD~-VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 75 SFDY-VILSQTLQAVRRPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred CccE-EehHhHHHhHhHHHHHHHHHHHh---cCeEEEE
Confidence 7776 66655667788899999999988 4455553
No 91
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.33 E-value=1.8e-11 Score=107.19 Aligned_cols=114 Identities=16% Similarity=0.212 Sum_probs=82.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
..++...+..-.|.+|||||||+|..+..++.. |.+.|+|||.++. -+.+ -+.+++ -.|. ...+.++..-++
T Consensus 104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~l--f~~Q-F~~i~~---~lg~-~~~~~~lplgvE 175 (315)
T PF08003_consen 104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPL--FYLQ-FEAIKH---FLGQ-DPPVFELPLGVE 175 (315)
T ss_pred HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChH--HHHH-HHHHHH---HhCC-CccEEEcCcchh
Confidence 456777776668899999999999999998775 7777999999974 2222 111222 1121 224455545677
Q ss_pred CCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 124 TEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 124 ~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++|. .+. +|+||+..+ +|-.++...|.++...|+|||.+|+-
T Consensus 176 ~Lp~-~~~--FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 176 DLPN-LGA--FDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred hccc-cCC--cCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 8875 343 566766555 79999999999999999999999973
No 92
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.33 E-value=2.9e-11 Score=107.09 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=77.7
Q ss_pred HHHHHHH-HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227 43 LISRMID-QINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD 121 (268)
Q Consensus 43 ~~~~ll~-~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD 121 (268)
.+...+. .+...++.+|||+|||+|.+++.++...+..+|+|+|+|+.++.+|+ ++++ ..+. ..+++++++|
T Consensus 108 lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~--~n~~----~~~~-~~~i~~~~~D 180 (284)
T TIGR03533 108 LIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAE--INIE----RHGL-EDRVTLIQSD 180 (284)
T ss_pred HHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCcEEEEECc
Confidence 3334333 33334567899999999999999998776556999999998666654 3333 2333 2479999999
Q ss_pred CCCCcccccccceEEEEEeccccC--------------cC------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 122 FLTEEHREKITQASIVFVNNFAFG--------------PT------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 122 ~~~l~~~~~~~d~dvv~~~~~~~~--------------~~------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.+. +++. .+|+|++|..+.. |. ....+.++.+.|||||++++.
T Consensus 181 ~~~~-~~~~--~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 181 LFAA-LPGR--KYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred hhhc-cCCC--CccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 8652 2222 4678888743211 10 133467777899999999974
No 93
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.33 E-value=6.3e-12 Score=105.14 Aligned_cols=99 Identities=16% Similarity=0.263 Sum_probs=70.9
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
+..+.+.+ .++.+|||||||+|.++..++...+.. ++|||+|+.++..++ ..+++++++|+.
T Consensus 4 ~~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~-~~giD~s~~~i~~a~---------------~~~~~~~~~d~~ 65 (194)
T TIGR02081 4 LESILNLI--PPGSRVLDLGCGDGELLALLRDEKQVR-GYGIEIDQDGVLACV---------------ARGVNVIQGDLD 65 (194)
T ss_pred HHHHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCc-EEEEeCCHHHHHHHH---------------HcCCeEEEEEhh
Confidence 34455553 477899999999999998887765555 899999986333321 125789999997
Q ss_pred C-Cc-ccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCC
Q psy17227 124 T-EE-HREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDG 162 (268)
Q Consensus 124 ~-l~-~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpG 162 (268)
+ ++ ++++. +|+|+++.. .|.+++...++++.|+++++
T Consensus 66 ~~l~~~~~~s--fD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 66 EGLEAFPDKS--FDYVILSQTLQATRNPEEILDEMLRVGRHA 105 (194)
T ss_pred hcccccCCCC--cCEEEEhhHhHcCcCHHHHHHHHHHhCCeE
Confidence 6 43 54444 456666554 67788999999999987753
No 94
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.32 E-value=3.2e-11 Score=112.74 Aligned_cols=114 Identities=10% Similarity=0.121 Sum_probs=80.9
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
...++..+++.+|++|||+|||+|..+..++...+...|+|+|+|+.++.. +++++++ .|. +++++++|+.
T Consensus 233 s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~--~~~n~~~----~g~---~~~~~~~D~~ 303 (427)
T PRK10901 233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLER--VRENLQR----LGL---KATVIVGDAR 303 (427)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHH--HHHHHHH----cCC---CeEEEEcCcc
Confidence 345666788899999999999999999999987654569999999974444 4444442 332 4789999998
Q ss_pred CCcc--cccccceEEEEEeccccC-------cC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 124 TEEH--REKITQASIVFVNNFAFG-------PT----------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 124 ~l~~--~~~~~d~dvv~~~~~~~~-------~~----------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+++. ... .+|.|+++..|.. |+ ....+..+++.|||||+++.+
T Consensus 304 ~~~~~~~~~--~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 304 DPAQWWDGQ--PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred cchhhcccC--CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 7642 222 3577886654321 11 124577888999999999855
No 95
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.32 E-value=2.8e-11 Score=113.06 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227 42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD 121 (268)
Q Consensus 42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD 121 (268)
.+...++..+++.+|.+|||+|||+|+.+..++...+..+++|+|+++.++.. +++++++ .|.. ..+.+.++|
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~--~~~n~~r----~g~~-~~v~~~~~d 297 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKR--VYENLKR----LGLT-IKAETKDGD 297 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHH--HHHHHHH----cCCC-eEEEEeccc
Confidence 34455667788999999999999999999999987764569999999974333 4454442 3433 245668888
Q ss_pred CCCCcccccccceEEEEEecccc-------CcC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 122 FLTEEHREKITQASIVFVNNFAF-------GPT----------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 122 ~~~l~~~~~~~d~dvv~~~~~~~-------~~~----------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
..++++......+|.|+++..|. .|+ ....+.++++.|||||+++.+
T Consensus 298 ~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred cccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 87655311112456787654321 232 245678888999999999865
No 96
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.31 E-value=2.6e-11 Score=99.26 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=78.1
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
+.++++.+++.++++|||||||+|.++..++.. +. +++|+|+++.+...++ +++. ...+++++++|+.
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~-~v~~vE~~~~~~~~~~--~~~~--------~~~~v~ii~~D~~ 69 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLER-AA-RVTAIEIDPRLAPRLR--EKFA--------AADNLTVIHGDAL 69 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CC-eEEEEECCHHHHHHHH--HHhc--------cCCCEEEEECchh
Confidence 357888899999999999999999999999886 44 4999999997444432 2221 1358999999999
Q ss_pred CCcccccccceEEEEEeccccCcCHHHHHHHHHh--cCCCCcEEEEe
Q psy17227 124 TEEHREKITQASIVFVNNFAFGPTVDHALKERFQ--DLKDGARIVSS 168 (268)
Q Consensus 124 ~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r--~LkpGG~~i~~ 168 (268)
++++++. .+|.|++|..++.. ...+..+.+ .+.++|.+++-
T Consensus 70 ~~~~~~~--~~d~vi~n~Py~~~--~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 70 KFDLPKL--QPYKVVGNLPYNIS--TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred cCCcccc--CCCEEEECCCcccH--HHHHHHHHhcCCCcceEEEEEE
Confidence 9886553 35678887665542 344444443 24578888774
No 97
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.4e-11 Score=99.85 Aligned_cols=109 Identities=21% Similarity=0.298 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227 41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG 120 (268)
Q Consensus 41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g 120 (268)
+..+.++++.+.++++++||+||||+|..+.-+|+..+ +|+.||..+..... ++++++ ..| ..|+.+++|
T Consensus 58 P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~--A~~~L~----~lg--~~nV~v~~g 127 (209)
T COG2518 58 PHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQ--ARRNLE----TLG--YENVTVRHG 127 (209)
T ss_pred cHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHH--HHHHHH----HcC--CCceEEEEC
Confidence 34678899999999999999999999999999998766 49999999863333 334444 233 557999999
Q ss_pred CCCC-CcccccccceEEEEEeccc-cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 121 DFLT-EEHREKITQASIVFVNNFA-FGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 121 D~~~-l~~~~~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
|... +|- .. .+|.|++.+.. ..| ..+.+.|||||++++-
T Consensus 128 DG~~G~~~-~a--PyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 128 DGSKGWPE-EA--PYDRIIVTAAAPEVP------EALLDQLKPGGRLVIP 168 (209)
T ss_pred CcccCCCC-CC--CcCEEEEeeccCCCC------HHHHHhcccCCEEEEE
Confidence 9987 332 12 34667665441 222 3567889999999983
No 98
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.30 E-value=2.6e-11 Score=104.12 Aligned_cols=113 Identities=13% Similarity=0.111 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
.+..+...+...++.+|||||||+|.++..+++. ++. ++|+|+++.++..++ +++.. .+ .+++++.+|+
T Consensus 36 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~-v~~iD~s~~~~~~a~--~~~~~----~~---~~~~~~~~~~ 104 (233)
T PRK05134 36 RLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GAD-VTGIDASEENIEVAR--LHALE----SG---LKIDYRQTTA 104 (233)
T ss_pred HHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCe-EEEEcCCHHHHHHHH--HHHHH----cC---CceEEEecCH
Confidence 3444555555668899999999999999888764 655 999999987444333 32221 11 2678888998
Q ss_pred CCCcc-cccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 123 LTEEH-REKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 123 ~~l~~-~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+++. ... .+|+|++... .+.+++...++.+.+.|+|||++++.
T Consensus 105 ~~~~~~~~~--~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 105 EELAAEHPG--QFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred HHhhhhcCC--CccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 87652 222 4566766544 57788899999999999999999986
No 99
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.30 E-value=4.1e-11 Score=104.31 Aligned_cols=114 Identities=15% Similarity=0.083 Sum_probs=74.6
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 44 ISRMIDQINA-TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 44 ~~~ll~~l~~-~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
+..++..+.. .++.+|||+|||+|.+++.+++..+..+|+|+|+|+.++..++ ++++. . +++++++|+
T Consensus 74 v~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~--~N~~~--------~-~~~~~~~D~ 142 (251)
T TIGR03704 74 VDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCAR--RNLAD--------A-GGTVHEGDL 142 (251)
T ss_pred HHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHHH--------c-CCEEEEeec
Confidence 3444444432 2345899999999999999988776556999999998666554 44432 1 257899998
Q ss_pred CCCcccccccceEEEEEeccccCc-----------------------C----HHHHHHHHHhcCCCCcEEEEe
Q psy17227 123 LTEEHREKITQASIVFVNNFAFGP-----------------------T----VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 123 ~~l~~~~~~~d~dvv~~~~~~~~~-----------------------~----~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+.........+|+|++|..+... + ....+..+.+.|||||++++.
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 763211011247899988654321 1 123345555899999999974
No 100
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.29 E-value=1.2e-11 Score=109.46 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=69.9
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
++++.+ ..+|++|||||||+|-+++.++ +.|+.+|+|+|++|.++..++ ++++ .++.. .++.+. ...+.
T Consensus 153 ~~l~~~-~~~g~~vLDvG~GSGILaiaA~-klGA~~v~a~DiDp~Av~~a~--~N~~----~N~~~-~~~~v~--~~~~~ 221 (295)
T PF06325_consen 153 ELLEKY-VKPGKRVLDVGCGSGILAIAAA-KLGAKKVVAIDIDPLAVEAAR--ENAE----LNGVE-DRIEVS--LSEDL 221 (295)
T ss_dssp HHHHHH-SSTTSEEEEES-TTSHHHHHHH-HTTBSEEEEEESSCHHHHHHH--HHHH----HTT-T-TCEEES--CTSCT
T ss_pred HHHHHh-ccCCCEEEEeCCcHHHHHHHHH-HcCCCeEEEecCCHHHHHHHH--HHHH----HcCCC-eeEEEE--Eeccc
Confidence 344444 5688999999999999998654 579988999999997555554 4433 23443 355442 22222
Q ss_pred cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+ . ..+|+|++|-. ..-+...+..+.+.|||||.++++
T Consensus 222 ~--~--~~~dlvvANI~--~~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 222 V--E--GKFDLVVANIL--ADVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp C--C--S-EEEEEEES---HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred c--c--ccCCEEEECCC--HHHHHHHHHHHHHhhCCCCEEEEc
Confidence 2 1 46789998833 333455556677899999999987
No 101
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.6e-11 Score=108.02 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=71.7
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
+.++.+ ..+|.+|||+|||+|-+++.+ .+.|+.+++|+|++|.++..++ ++++. ++.. ..++....+....
T Consensus 154 ~~Le~~-~~~g~~vlDvGcGSGILaIAa-~kLGA~~v~g~DiDp~AV~aa~--eNa~~----N~v~-~~~~~~~~~~~~~ 224 (300)
T COG2264 154 EALEKL-LKKGKTVLDVGCGSGILAIAA-AKLGAKKVVGVDIDPQAVEAAR--ENARL----NGVE-LLVQAKGFLLLEV 224 (300)
T ss_pred HHHHHh-hcCCCEEEEecCChhHHHHHH-HHcCCceEEEecCCHHHHHHHH--HHHHH----cCCc-hhhhcccccchhh
Confidence 344444 348899999999999999864 5589999999999997666654 44442 2221 1122333333222
Q ss_pred cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+ .+ ..+|+|++|- ...-+......+.+.|||||+++++
T Consensus 225 ~--~~-~~~DvIVANI--LA~vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 225 P--EN-GPFDVIVANI--LAEVLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred c--cc-CcccEEEehh--hHHHHHHHHHHHHHHcCCCceEEEE
Confidence 2 21 2578898873 3333455567788999999999987
No 102
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.29 E-value=6.3e-11 Score=104.10 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227 42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD 121 (268)
Q Consensus 42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD 121 (268)
..+..++..+...++.+|||+|||+|.+++.++...+..+++|+|+|+.++..++ +++. .. ...+++++++|
T Consensus 95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~--~n~~-----~~-~~~~i~~~~~d 166 (275)
T PRK09328 95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVAR--RNAK-----HG-LGARVEFLQGD 166 (275)
T ss_pred HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHH-----hC-CCCcEEEEEcc
Confidence 3444555556667888999999999999999998876667999999998655554 3322 11 13489999999
Q ss_pred CCCCcccccccceEEEEEeccccCc--------C-------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 122 FLTEEHREKITQASIVFVNNFAFGP--------T-------------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 122 ~~~l~~~~~~~d~dvv~~~~~~~~~--------~-------------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.+.. .. ..+|+|++|..+... + ....+.++.+.|||||++++.
T Consensus 167 ~~~~~-~~--~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 167 WFEPL-PG--GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred ccCcC-CC--CceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 96532 12 246788876443211 1 133456777999999999984
No 103
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.28 E-value=7.1e-11 Score=104.62 Aligned_cols=118 Identities=15% Similarity=0.170 Sum_probs=78.1
Q ss_pred HHHHHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227 41 FDLISRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK 119 (268)
Q Consensus 41 ~~~~~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 119 (268)
...+..+++.+. ..+..+|||+|||+|.+++.++...+..+|+|+|+|+.++..++ ++++ ..+. ..+++|++
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~--~n~~----~~~~-~~~v~~~~ 171 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAE--ENAE----KNQL-EHRVEFIQ 171 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHH----HcCC-CCcEEEEE
Confidence 334444554442 23336899999999999999998876556999999998666554 3333 2333 23599999
Q ss_pred cCCCCCcccccccceEEEEEecccc--------------Cc------------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 120 GDFLTEEHREKITQASIVFVNNFAF--------------GP------------TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 120 gD~~~l~~~~~~~d~dvv~~~~~~~--------------~~------------~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|+.+ +++.. .+|+|++|..+. .| .....+.++.+.|+|||.+++.
T Consensus 172 ~d~~~-~~~~~--~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 172 SNLFE-PLAGQ--KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred Cchhc-cCcCC--CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 99876 22222 467788774321 11 1233456677899999999874
No 104
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.28 E-value=5.4e-11 Score=109.26 Aligned_cols=106 Identities=14% Similarity=0.184 Sum_probs=72.9
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
+.++.+|||||||+|.+++.+++..+..+|+|+|+|+.++..++ +++++ .+ .+++++++|+.+..++.. .
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Ar--eNa~~----~g---~rV~fi~gDl~e~~l~~~-~ 318 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETAR--KNAAD----LG---ARVEFAHGSWFDTDMPSE-G 318 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHH--HHHHH----cC---CcEEEEEcchhccccccC-C
Confidence 34667999999999999999888766666999999998666554 44432 22 379999999976433211 2
Q ss_pred ceEEEEEeccccCc----------------------C----HHHHHHHHHhcCCCCcEEEEe
Q psy17227 133 QASIVFVNNFAFGP----------------------T----VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 133 d~dvv~~~~~~~~~----------------------~----~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+|+|++|..+... + ....+..+.+.|+|||.+++.
T Consensus 319 ~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 319 KWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred CccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 47889988654221 1 112234444789999998874
No 105
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=5.6e-11 Score=111.63 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=79.9
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
.+...+++.++.+|||+|||+|..+..++... +..+|+|+|+++.++.. ++++++ ..|. .+++++++|+.+
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~--~~~n~~----~~g~--~~v~~~~~D~~~ 312 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKL--IEENAK----RLGL--TNIETKALDARK 312 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHH--HHHHHH----HcCC--CeEEEEeCCccc
Confidence 35556788899999999999999999999876 34469999999874433 334443 2343 369999999987
Q ss_pred CcccccccceEEEEEeccccC-------cC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EEHREKITQASIVFVNNFAFG-------PT----------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~~~~~~~d~dvv~~~~~~~~-------~~----------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++.... ..+|+|+++..+.. |+ ....+.++++.|||||+++.+
T Consensus 313 ~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 313 VHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred ccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 641111 24677887754321 11 123578888999999999854
No 106
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.27 E-value=7.2e-11 Score=105.63 Aligned_cols=103 Identities=18% Similarity=0.179 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceE
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQAS 135 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~d 135 (268)
..+|||+|||+|.+++.++...+..+|+|+|+|+.++..|+ ++++ ..+. ..+++++++|+.+. ++.. .+|
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~--~n~~----~~~l-~~~i~~~~~D~~~~-l~~~--~fD 203 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAE--INIE----RHGL-EDRVTLIESDLFAA-LPGR--RYD 203 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHH--HHHH----HhCC-CCcEEEEECchhhh-CCCC--Ccc
Confidence 36899999999999999998876666999999998666654 3333 2332 24699999998652 2222 467
Q ss_pred EEEEecccc--------------CcC------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 136 IVFVNNFAF--------------GPT------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 136 vv~~~~~~~--------------~~~------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|++|..+. .|. ....+.++.+.|||||++++.
T Consensus 204 lIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 204 LIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred EEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 888874321 111 134467777899999999984
No 107
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.26 E-value=5.9e-11 Score=104.09 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=79.1
Q ss_pred HHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 48 IDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
...+++++|++|||+|||+|+.+..+|...+. ..|+++|+++.+ ++.+++++++ .|. .+++++++|+.+++
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~--l~~~~~n~~~----~g~--~~v~~~~~D~~~~~ 135 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSR--TKVLIANINR----CGV--LNVAVTNFDGRVFG 135 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHH--HHHHHHHHHH----cCC--CcEEEecCCHHHhh
Confidence 34568899999999999999999999887642 369999999973 3334455543 343 47999999998765
Q ss_pred ccccccceEEEEEeccccC-------cC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 HREKITQASIVFVNNFAFG-------PT----------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 ~~~~~~d~dvv~~~~~~~~-------~~----------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.... .+|+|+++..|.. |+ ..+.+.++.+.|||||+++.+
T Consensus 136 ~~~~--~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 136 AAVP--KFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred hhcc--CCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4332 3678887654322 11 123577788999999999854
No 108
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.25 E-value=1.8e-11 Score=100.98 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=70.0
Q ss_pred HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227 50 QINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE 129 (268)
Q Consensus 50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~ 129 (268)
.|+-..-.++||+|||.|.++..+|.+ |..++++|+|+.++..|+ +++. ..++|+|+++|+.+.. ++
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar------~Rl~----~~~~V~~~~~dvp~~~-P~ 104 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARAR------ERLA----GLPHVEWIQADVPEFW-PE 104 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHH------HHTT----T-SSEEEEES-TTT----S
T ss_pred hcCccccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHH------HhcC----CCCCeEEEECcCCCCC-CC
Confidence 577777789999999999999999876 566999999987433333 2221 2358999999997753 23
Q ss_pred cccceEEEEE-eccccCc---CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 130 KITQASIVFV-NNFAFGP---TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 130 ~~~d~dvv~~-~~~~~~~---~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
. .+|+|.+ +..++.. ++...+..+...|+|||.+|+.
T Consensus 105 ~--~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 105 G--RFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp S---EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred C--CeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3 3455554 4445553 3566789999999999999985
No 109
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.2e-10 Score=99.40 Aligned_cols=121 Identities=19% Similarity=0.177 Sum_probs=96.4
Q ss_pred ccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccE
Q psy17227 37 GETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEF 115 (268)
Q Consensus 37 g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i 115 (268)
..++++....++..+++.||++|||.|.|+|.++..+|...+. .+|+..|+.++..+. |++|+++ .+.. .++
T Consensus 76 QiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~--A~~Nl~~----~~l~-d~v 148 (256)
T COG2519 76 QIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKT--ARENLSE----FGLG-DRV 148 (256)
T ss_pred ceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHH--HHHHHHH----hccc-cce
Confidence 3455566778999999999999999999999999999986654 579999999974444 4466654 3543 359
Q ss_pred EEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227 116 RLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSF 171 (268)
Q Consensus 116 ~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~ 171 (268)
++..+|+.+.-+.+ ++|+++. -.|++..++..+.+.|||||.++++-|.
T Consensus 149 ~~~~~Dv~~~~~~~---~vDav~L----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 149 TLKLGDVREGIDEE---DVDAVFL----DLPDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred EEEecccccccccc---ccCEEEE----cCCChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 99999999866544 5677875 4689999999999999999999987443
No 110
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.24 E-value=1.1e-10 Score=104.57 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=69.9
Q ss_pred HHHHHHHHcCC---CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227 43 LISRMIDQINA---TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK 119 (268)
Q Consensus 43 ~~~~ll~~l~~---~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 119 (268)
.+..+++.+.. .++.+|||||||+|.+++.+++. |.. |+|+|+|+.|+..++ ++++.... .+....+++|.+
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g~~-V~gvD~S~~ml~~A~--~~~~~~~~-~~~~~~~~~f~~ 203 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-GAI-VSASDISAAMVAEAE--RRAKEALA-ALPPEVLPKFEA 203 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-CCE-EEEEECCHHHHHHHH--HHHHhccc-ccccccceEEEE
Confidence 34455555532 36789999999999999998875 655 999999998666654 33321000 000123689999
Q ss_pred cCCCCCcccccccceEEEEEecc-ccCcCH-HH-HHHHHHhcCCCCcEEEE
Q psy17227 120 GDFLTEEHREKITQASIVFVNNF-AFGPTV-DH-ALKERFQDLKDGARIVS 167 (268)
Q Consensus 120 gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~-~~-~l~e~~r~LkpGG~~i~ 167 (268)
+|+.+++ . .+|+|++... +|.++. .. .+..+. .+.+||.++.
T Consensus 204 ~Dl~~l~---~--~fD~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs 248 (315)
T PLN02585 204 NDLESLS---G--KYDTVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIIS 248 (315)
T ss_pred cchhhcC---C--CcCEEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEE
Confidence 9986542 3 3456665544 565542 22 334444 4566666664
No 111
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.23 E-value=6.5e-11 Score=86.56 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=73.5
Q ss_pred EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEE
Q psy17227 58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIV 137 (268)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv 137 (268)
+++|+|||+|..+..++. .+..+++|+|+++.+...++ +... . ....+++++.+|+.+.+.. ....+|++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~--~~~~-----~-~~~~~~~~~~~~~~~~~~~-~~~~~d~i 70 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELAR--KAAA-----A-LLADNVEVLKGDAEELPPE-ADESFDVI 70 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHH--HHHh-----c-ccccceEEEEcChhhhccc-cCCceEEE
Confidence 489999999999998877 45556999999987444333 1111 1 1235899999999886531 12357889
Q ss_pred EEecccc--CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 138 FVNNFAF--GPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 138 ~~~~~~~--~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+++..++ .......++.+.+.|||||.+++.
T Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 71 ISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 8887754 456777788999999999999874
No 112
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.23 E-value=1e-10 Score=99.60 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA 134 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~ 134 (268)
.+.+|||+|||+|.++..+++. +.. ++|+|+|+.++..++ +++. ..+ ..++++.++|+.+.+... ...+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~-v~~iD~s~~~~~~a~--~~~~----~~~--~~~~~~~~~d~~~~~~~~-~~~~ 113 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GAN-VTGIDASEENIEVAK--LHAK----KDP--LLKIEYRCTSVEDLAEKG-AKSF 113 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCe-EEEEeCCHHHHHHHH--HHHH----HcC--CCceEEEeCCHHHhhcCC-CCCc
Confidence 4789999999999999988764 555 999999987443332 3222 112 126899999998876432 1245
Q ss_pred EEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 135 SIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 135 dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
|+|+++.. .|..++...+.++.++|+|||.+++.
T Consensus 114 D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 114 DVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred cEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 67776544 56788899999999999999998876
No 113
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=2.1e-10 Score=107.39 Aligned_cols=113 Identities=14% Similarity=0.199 Sum_probs=80.8
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
.+...++..+|++|||+|||+|+.+..++...+. .+|+++|+++.++ ..++++++ ..|. .+++++++|+.+
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl--~~~~~n~~----r~g~--~~v~~~~~D~~~ 314 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL--KKLQENAQ----RLGL--KSIKILAADSRN 314 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH--HHHHHHHH----HcCC--CeEEEEeCChhh
Confidence 3555678899999999999999999999987643 4699999998743 33444444 2443 479999999988
Q ss_pred Cc----ccccccceEEEEEeccc-------cCcC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EE----HREKITQASIVFVNNFA-------FGPT----------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~----~~~~~~d~dvv~~~~~~-------~~~~----------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++ +..+ .+|.|+++..| +.|+ ....+.++++.|||||+++.+
T Consensus 315 ~~~~~~~~~~--~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvys 383 (434)
T PRK14901 315 LLELKPQWRG--YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYA 383 (434)
T ss_pred cccccccccc--cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 75 2223 35678776433 2232 234578888999999998854
No 114
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.21 E-value=1.8e-10 Score=98.43 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=65.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
..++.+|||||||+|.++..+++. +.. ++|+|+|+.++..++ +++. ..+.. .++++..+|+.. .+.
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~-v~~~D~s~~~i~~a~--~~~~----~~~~~-~~i~~~~~d~~~---~~~-- 126 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-GAK-VVASDISPQMVEEAR--ERAP----EAGLA-GNITFEVGDLES---LLG-- 126 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-CCE-EEEEECCHHHHHHHH--HHHH----hcCCc-cCcEEEEcCchh---ccC--
Confidence 467889999999999999998875 555 999999998655554 3222 22221 479999999532 233
Q ss_pred ceEEEEEecc-ccCc--CHHHHHHHHHhcCCCCcE
Q psy17227 133 QASIVFVNNF-AFGP--TVDHALKERFQDLKDGAR 164 (268)
Q Consensus 133 d~dvv~~~~~-~~~~--~~~~~l~e~~r~LkpGG~ 164 (268)
.+|+|++... +|.+ +....++++.+.+++|+.
T Consensus 127 ~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 127 RFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred CcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEE
Confidence 3566766554 3544 355667777777654443
No 115
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=2.1e-10 Score=107.73 Aligned_cols=112 Identities=15% Similarity=0.105 Sum_probs=78.9
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
..+..++..+|++|||+|||+|+.+..++...+ ..+|+|+|+|+.++.. ++++++ ..|. .+++++++|+.+
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~--~~~~~~----~~g~--~~v~~~~~Da~~ 312 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEK--IRSHAS----ALGI--TIIETIEGDARS 312 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHH--HHHHHH----HhCC--CeEEEEeCcccc
Confidence 344567888999999999999999998887653 3369999999974443 334444 3343 379999999988
Q ss_pred CcccccccceEEEEEecccc-------CcC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EEHREKITQASIVFVNNFAF-------GPT----------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~~~~~~~d~dvv~~~~~~~-------~~~----------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++ ++. .+|+|+++..|. .|+ ....+.++++.|||||+++..
T Consensus 313 ~~-~~~--~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys 376 (445)
T PRK14904 313 FS-PEE--QPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYA 376 (445)
T ss_pred cc-cCC--CCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 65 223 356777653321 111 123578888999999999965
No 116
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=2.8e-10 Score=106.35 Aligned_cols=112 Identities=12% Similarity=0.047 Sum_probs=79.9
Q ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
+...+++.+|.+|||+|||+|+.+..+|...+ ..+|+++|+|+.++ ..+++++++ .|. .+++++++|+.++
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl--~~~~~n~~r----~g~--~~v~~~~~Da~~l 300 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI--QLVEKHAKR----LKL--SSIEIKIADAERL 300 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHH--HHHHHHHHH----cCC--CeEEEEECchhhh
Confidence 44567889999999999999999999988763 34699999999743 334455443 343 3699999999887
Q ss_pred c-ccccccceEEEEEecccc-------CcC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 E-HREKITQASIVFVNNFAF-------GPT----------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~-~~~~~~d~dvv~~~~~~~-------~~~----------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+ +.+. .+|.|+++..|- .|+ ..+.+.++++.|||||.++.+
T Consensus 301 ~~~~~~--~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 301 TEYVQD--TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred hhhhhc--cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6 3233 356788765441 121 133477888999999998854
No 117
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.19 E-value=2.1e-10 Score=99.05 Aligned_cols=123 Identities=20% Similarity=0.224 Sum_probs=87.7
Q ss_pred CcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccc
Q psy17227 35 VYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG 113 (268)
Q Consensus 35 ~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 113 (268)
...-+.+..+..++..+++.||++||+.|.|+|.++..+|+..+ ..+|+..|+.++.... ++++++ ..|. ..
T Consensus 20 rtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~--A~~n~~----~~gl-~~ 92 (247)
T PF08704_consen 20 RTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEK--ARKNFE----RHGL-DD 92 (247)
T ss_dssp SS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHH--HHHHHH----HTTC-CT
T ss_pred CcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHH--HHHHHH----HcCC-CC
Confidence 33446677888899999999999999999999999999998764 4579999999863333 445555 3565 35
Q ss_pred cEEEEEcCCCCCccccc-ccceEEEEEeccccCcCHHHHHHHHHhcC-CCCcEEEEe
Q psy17227 114 EFRLVKGDFLTEEHREK-ITQASIVFVNNFAFGPTVDHALKERFQDL-KDGARIVSS 168 (268)
Q Consensus 114 ~i~~~~gD~~~l~~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~L-kpGG~~i~~ 168 (268)
++++.+.|+.+--|.+. ..++|.||.. .|++..++..+.++| ||||++++.
T Consensus 93 ~v~~~~~Dv~~~g~~~~~~~~~DavfLD----lp~Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 93 NVTVHHRDVCEEGFDEELESDFDAVFLD----LPDPWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp TEEEEES-GGCG--STT-TTSEEEEEEE----SSSGGGGHHHHHHHE-EEEEEEEEE
T ss_pred CceeEecceecccccccccCcccEEEEe----CCCHHHHHHHHHHHHhcCCceEEEE
Confidence 89999999976444221 2467888864 578899999999999 899999986
No 118
>KOG1269|consensus
Probab=99.17 E-value=7.5e-11 Score=107.12 Aligned_cols=113 Identities=16% Similarity=0.242 Sum_probs=89.6
Q ss_pred HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227 50 QINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE 129 (268)
Q Consensus 50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~ 129 (268)
+.+..++..++|+|||.|.+.++++...++. ++|+|.++. .+.+...... ..+.. .+..++.+|+.+.||++
T Consensus 105 ~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~-~~Gl~~n~~--e~~~~~~~~~----~~~l~-~k~~~~~~~~~~~~fed 176 (364)
T KOG1269|consen 105 RESCFPGSKVLDVGTGVGGPSRYIAVFKKAG-VVGLDNNAY--EAFRANELAK----KAYLD-NKCNFVVADFGKMPFED 176 (364)
T ss_pred hhcCcccccccccCcCcCchhHHHHHhccCC-ccCCCcCHH--HHHHHHHHHH----HHHhh-hhcceehhhhhcCCCCc
Confidence 3467888899999999999999998866676 999999986 3333222111 11222 34556999999999999
Q ss_pred cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227 130 KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSF 171 (268)
Q Consensus 130 ~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~ 171 (268)
+.+|+ +.++.+.+|.++...+++|++|++||||.+++.++.
T Consensus 177 n~fd~-v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 177 NTFDG-VRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cccCc-EEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 98887 778889999999999999999999999999987543
No 119
>PRK04457 spermidine synthase; Provisional
Probab=99.16 E-value=2e-10 Score=100.53 Aligned_cols=108 Identities=12% Similarity=0.060 Sum_probs=76.3
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
..++.+|||||||+|.++..+++..+..++++||+++.++.+++ +++. ..+ ..++++++++|+.+.-- ....
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~--~~f~----~~~-~~~rv~v~~~Da~~~l~-~~~~ 135 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVAR--NHFE----LPE-NGERFEVIEADGAEYIA-VHRH 135 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHH--HHcC----CCC-CCCceEEEECCHHHHHH-hCCC
Confidence 34567899999999999999988877667999999998655554 3221 111 13589999999876321 1112
Q ss_pred ceEEEEEecccc--Cc---CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 133 QASIVFVNNFAF--GP---TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 133 d~dvv~~~~~~~--~~---~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+|+|+++.+.. .+ .....++++.+.|+|||++++.
T Consensus 136 ~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 136 STDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 467888875421 11 1257789999999999999985
No 120
>KOG1541|consensus
Probab=99.16 E-value=1.2e-10 Score=96.98 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=79.3
Q ss_pred HHHHHHHHHcCCCC--CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227 42 DLISRMIDQINATP--DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK 119 (268)
Q Consensus 42 ~~~~~ll~~l~~~~--~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 119 (268)
+...+.++.+.+.. ..-|||||||+|-.+..+.. .|.. .+|+|+|+.|..+|.. . + -.-.++.
T Consensus 35 em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~-~Gh~-wiGvDiSpsML~~a~~-~---e---------~egdlil 99 (270)
T KOG1541|consen 35 EMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD-SGHQ-WIGVDISPSMLEQAVE-R---E---------LEGDLIL 99 (270)
T ss_pred HHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc-CCce-EEeecCCHHHHHHHHH-h---h---------hhcCeee
Confidence 44566777777765 66799999999999876544 5654 8999999986665542 1 1 1245788
Q ss_pred cCCCC-CcccccccceEEEEEecccc---------CcC--HHHHHHHHHhcCCCCcEEEEe
Q psy17227 120 GDFLT-EEHREKITQASIVFVNNFAF---------GPT--VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 120 gD~~~-l~~~~~~~d~dvv~~~~~~~---------~~~--~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|+-. +||...+||. +|++.++.| .|. +...|..+|.+|++|++.++-
T Consensus 100 ~DMG~GlpfrpGtFDg-~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 100 CDMGEGLPFRPGTFDG-VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eecCCCCCCCCCccce-EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 88865 8998899998 777766532 222 233467788999999999985
No 121
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=4.3e-10 Score=98.60 Aligned_cols=114 Identities=13% Similarity=0.107 Sum_probs=82.6
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
..+-+++.+....+.+|||+|||+|-+++.+|+..+..+++-+|+|..++..|+ +++. .++. .+..+...|.
T Consensus 146 GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar--~Nl~----~N~~--~~~~v~~s~~ 217 (300)
T COG2813 146 GSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESAR--KNLA----ANGV--ENTEVWASNL 217 (300)
T ss_pred HHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHH--HhHH----HcCC--CccEEEEecc
Confidence 345688899888777999999999999999999998878999999987555554 3333 2222 2336777776
Q ss_pred CCCcccccccceEEEEEeccccCcC-H-H----HHHHHHHhcCCCCcEEEEe
Q psy17227 123 LTEEHREKITQASIVFVNNFAFGPT-V-D----HALKERFQDLKDGARIVSS 168 (268)
Q Consensus 123 ~~l~~~~~~~d~dvv~~~~~~~~~~-~-~----~~l~e~~r~LkpGG~~i~~ 168 (268)
.+-- .+ .+|.|++|..+|.-. . . +.+....+.|++||.+.+.
T Consensus 218 ~~~v-~~---kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 218 YEPV-EG---KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred cccc-cc---cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 6422 12 467899998877532 2 2 3456777899999998764
No 122
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.14 E-value=6.7e-10 Score=94.74 Aligned_cols=124 Identities=10% Similarity=0.087 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHH-----HHHHHHhccccccEE
Q psy17227 42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVF-----KRWMQWYGKRHGEFR 116 (268)
Q Consensus 42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~-----~~~~~~~~~~~~~i~ 116 (268)
..+.+.+..+...++.+||+.|||.|.-+..+|. .|.. |+|+|+|+.++.-+...... ....... ....+++
T Consensus 30 p~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~-~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~-~~~~~i~ 106 (226)
T PRK13256 30 EFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLS-KGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKL-YKGDDIE 106 (226)
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHh-CCCc-EEEEecCHHHHHHHHHHcCCCcceecccccce-eccCceE
Confidence 4455556667777788999999999999999987 4887 99999999643332110000 0000000 0124799
Q ss_pred EEEcCCCCCccc-ccccceEEEEEecc-c-cCcCH-HHHHHHHHhcCCCCcEEEEe
Q psy17227 117 LVKGDFLTEEHR-EKITQASIVFVNNF-A-FGPTV-DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 117 ~~~gD~~~l~~~-~~~~d~dvv~~~~~-~-~~~~~-~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.+||+.+++.. +....+|.|+-..+ + ..++. .+..+.+.+.|+|||.++..
T Consensus 107 ~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 107 IYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred EEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 999999998632 22224556654333 3 34454 44567888999999998864
No 123
>PHA03411 putative methyltransferase; Provisional
Probab=99.14 E-value=3.7e-10 Score=98.40 Aligned_cols=101 Identities=13% Similarity=0.033 Sum_probs=69.6
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227 52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI 131 (268)
Q Consensus 52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~ 131 (268)
...++.+|||+|||+|.+++.++...+..+|+|+|+|+.++..++ ++ ..+++++++|+.++...
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar--~n-----------~~~v~~v~~D~~e~~~~--- 124 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGK--RL-----------LPEAEWITSDVFEFESN--- 124 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH--Hh-----------CcCCEEEECchhhhccc---
Confidence 344567899999999999988877654446999999997555543 11 23789999999886532
Q ss_pred cceEEEEEeccccCc---C------------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 132 TQASIVFVNNFAFGP---T------------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~---~------------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
..+|+|++|..++.. + +...+...-..|+|+|.+.+.
T Consensus 125 ~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 125 EKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred CCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 246788888664431 1 122334445789999987644
No 124
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.14 E-value=2.9e-10 Score=104.94 Aligned_cols=108 Identities=12% Similarity=0.116 Sum_probs=74.6
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--ccccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKI 131 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~ 131 (268)
.++.+|||+|||+|.+++.++. .++.+|++||+|+.++..++ ++++ .++....+++++++|+.+.- +....
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~--~N~~----~Ngl~~~~v~~i~~D~~~~l~~~~~~~ 291 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIAR--QNVE----LNKLDLSKAEFVRDDVFKLLRTYRDRG 291 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHH--HHHH----HcCCCCCcEEEEEccHHHHHHHHHhcC
Confidence 4688999999999999987654 46667999999998555543 4443 23432247999999998742 21111
Q ss_pred cceEEEEEeccccCcCHH----------HHHHHHHhcCCCCcEEEEe
Q psy17227 132 TQASIVFVNNFAFGPTVD----------HALKERFQDLKDGARIVSS 168 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~~~~----------~~l~e~~r~LkpGG~~i~~ 168 (268)
..+|+|+++...+..... ..+....+.|||||.++++
T Consensus 292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 246889998776654421 2223456899999999965
No 125
>PRK00811 spermidine synthase; Provisional
Probab=99.13 E-value=3.5e-10 Score=100.12 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc-ccccEEEEEcCCCCCccccccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGK-RHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
.+..+|||||||+|.+++.+++..+..+|++||+++.++.+++ +.+.... .+. ..++++++.+|+.+.-- ....
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~--~~~~~~~--~~~~~d~rv~v~~~Da~~~l~-~~~~ 149 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCR--KYLPEIA--GGAYDDPRVELVIGDGIKFVA-ETEN 149 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHH--HHhHHhc--cccccCCceEEEECchHHHHh-hCCC
Confidence 3567899999999999999887656667999999998666654 3332210 011 24689999999876321 1123
Q ss_pred ceEEEEEeccc-cCcC----HHHHHHHHHhcCCCCcEEEEe
Q psy17227 133 QASIVFVNNFA-FGPT----VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 133 d~dvv~~~~~~-~~~~----~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+|+|+++..- +.+. ....++.+.+.|+|||++++.
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 150 SFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 56888887542 2221 144567888999999999974
No 126
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.12 E-value=3.1e-10 Score=98.00 Aligned_cols=109 Identities=17% Similarity=0.260 Sum_probs=79.6
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
.+....++.+..+|||||+|.|.++..+++.++.-+++.+|+-+ .+..++ + .++++++.||+. -
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v~~~~~--~------------~~rv~~~~gd~f-~ 154 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPE-VIEQAK--E------------ADRVEFVPGDFF-D 154 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HH-HHCCHH--H------------TTTEEEEES-TT-T
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHh-hhhccc--c------------ccccccccccHH-h
Confidence 45566678888899999999999999999999988899999953 122211 1 359999999998 4
Q ss_pred cccccccceEEEEEeccccC-cC--HHHHHHHHHhcCCCC--cEEEEeCCCCCC
Q psy17227 126 EHREKITQASIVFVNNFAFG-PT--VDHALKERFQDLKDG--ARIVSSKSFCPL 174 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~~~~~-~~--~~~~l~e~~r~LkpG--G~~i~~~~~~~~ 174 (268)
+++. +|+|++..++|. ++ ....|+++++.|+|| |++++.+.+.|+
T Consensus 155 ~~P~----~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 155 PLPV----ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp CCSS----ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred hhcc----ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 4433 678888777654 33 445589999999999 999998665443
No 127
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.12 E-value=5.6e-10 Score=96.17 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=78.2
Q ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-c-c
Q psy17227 51 INATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-E-H 127 (268)
Q Consensus 51 l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~-~ 127 (268)
+...++.+|||||||+|..++.+|+..+ ..+++++|+++.+..+|+ ++++ ..|.. .+++++.||+.+. + +
T Consensus 64 ~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~--~n~~----~~gl~-~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 64 VKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL--EFIK----KAGVD-HKINFIQSDALSALDQL 136 (234)
T ss_pred HHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----HcCCC-CcEEEEEccHHHHHHHH
Confidence 3556778999999999999888887653 447999999997555443 4444 34543 5899999999773 2 1
Q ss_pred ccc--ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 128 REK--ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 128 ~~~--~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
..+ ...+|+||++.. .+.....+..+.+.|||||.+++-
T Consensus 137 ~~~~~~~~fD~VfiDa~--k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 137 LNNDPKPEFDFAFVDAD--KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HhCCCCCCCCEEEECCC--HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 111 134678988643 234556788889999999999885
No 128
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.12 E-value=1.2e-10 Score=94.59 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=59.7
Q ss_pred EEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEe-ccccCcCHHHHHHHHHhcCCC
Q psy17227 83 WGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVN-NFAFGPTVDHALKERFQDLKD 161 (268)
Q Consensus 83 ~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~-~~~~~~~~~~~l~e~~r~Lkp 161 (268)
+|+|+|+.|+.+|+.+.... ..+. ..+++|+++|+.++|++++.+| +|++. .+.+.+++...+++++|+|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~----~~~~-~~~i~~~~~d~~~lp~~~~~fD--~v~~~~~l~~~~d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLK----ARSC-YKCIEWIEGDAIDLPFDDCEFD--AVTMGYGLRNVVDRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcc----cccC-CCceEEEEechhhCCCCCCCee--EEEecchhhcCCCHHHHHHHHHHHcCc
Confidence 59999999777765222111 0111 2379999999999998776555 45544 445678999999999999999
Q ss_pred CcEEEEeCCC
Q psy17227 162 GARIVSSKSF 171 (268)
Q Consensus 162 GG~~i~~~~~ 171 (268)
||.+++.+..
T Consensus 74 GG~l~i~d~~ 83 (160)
T PLN02232 74 GSRVSILDFN 83 (160)
T ss_pred CeEEEEEECC
Confidence 9999987443
No 129
>KOG2899|consensus
Probab=99.11 E-value=3.5e-10 Score=95.53 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc---------------------
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR--------------------- 111 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~--------------------- 111 (268)
+..+..+|||||-.|.++..+|+.+++..+.|+||++. .+.+|+++++..+...+..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~--LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPV--LIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHH--HHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 44567799999999999999999999999999999996 4444556555433222110
Q ss_pred ---------------cccEEEEEcCCCCCcccccccceEEEEEecc---cc----CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 112 ---------------HGEFRLVKGDFLTEEHREKITQASIVFVNNF---AF----GPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 112 ---------------~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~---~~----~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
..|..+...|+.++ ....+|+|+|-++ .| +..+...|+++++.|.|||++|+-
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDM----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhh----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 01222223333221 1124567766543 22 344888899999999999999994
No 130
>KOG3010|consensus
Probab=99.11 E-value=1.5e-10 Score=97.82 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=68.0
Q ss_pred EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEE
Q psy17227 58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIV 137 (268)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv 137 (268)
..+|||||+|..++.+|..+ . +|+|+|+|+.|+.+++ +..+.. -.....++...++.+|--.+ .++|+|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~-k-~VIatD~s~~mL~~a~--k~~~~~-----y~~t~~~ms~~~~v~L~g~e--~SVDlI 104 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY-K-EVIATDVSEAMLKVAK--KHPPVT-----YCHTPSTMSSDEMVDLLGGE--ESVDLI 104 (261)
T ss_pred eEEEeccCCCcchHHHHHhh-h-hheeecCCHHHHHHhh--cCCCcc-----cccCCccccccccccccCCC--cceeee
Confidence 79999999998888777653 3 3999999998666554 111000 00123445555555444223 467899
Q ss_pred EEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227 138 FVNNFAFGPTVDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 138 ~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~ 167 (268)
.+...+||-++...+++++|+|||.|.++.
T Consensus 105 ~~Aqa~HWFdle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 105 TAAQAVHWFDLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred hhhhhHHhhchHHHHHHHHHHcCCCCCEEE
Confidence 888778999999999999999988664443
No 131
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.10 E-value=8.8e-10 Score=104.95 Aligned_cols=104 Identities=11% Similarity=0.095 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA 134 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~ 134 (268)
++.+|||||||+|.+++.++...+..+|+|+|+|+.++..|+ +++. ..+. ..+++++++|+.+. +++. .+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~--~N~~----~~~l-~~~v~~~~~D~~~~-~~~~--~f 207 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAK--SNAI----KYEV-TDRIQIIHSNWFEN-IEKQ--KF 207 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHH--HHHH----HcCC-ccceeeeecchhhh-CcCC--Cc
Confidence 356899999999999999988776667999999998666554 4333 2333 24799999998642 2122 46
Q ss_pred EEEEEeccccCc-----------------------C----HHHHHHHHHhcCCCCcEEEEe
Q psy17227 135 SIVFVNNFAFGP-----------------------T----VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 135 dvv~~~~~~~~~-----------------------~----~~~~l~e~~r~LkpGG~~i~~ 168 (268)
|+|++|..+... + ....+.++.+.|||||.+++.
T Consensus 208 DlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 208 DFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred cEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 788886542211 0 112345566799999999874
No 132
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.10 E-value=7.1e-10 Score=97.65 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=67.5
Q ss_pred CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227 39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV 118 (268)
Q Consensus 39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~ 118 (268)
.....+..+++.+++.++++|||||||+|.++..+++.. . +|+|+|+++.++..++ +++. ..+++++
T Consensus 26 ~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~-~v~avE~d~~~~~~~~--~~~~---------~~~v~~i 92 (272)
T PRK00274 26 IDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA-A-KVTAVEIDRDLAPILA--ETFA---------EDNLTII 92 (272)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-C-cEEEEECCHHHHHHHH--Hhhc---------cCceEEE
Confidence 344567788899999999999999999999999998874 3 4999999997544432 2211 2589999
Q ss_pred EcCCCCCcccccccceEEEEEecccc
Q psy17227 119 KGDFLTEEHREKITQASIVFVNNFAF 144 (268)
Q Consensus 119 ~gD~~~l~~~~~~~d~dvv~~~~~~~ 144 (268)
++|+.++++++-. .+.|++|..++
T Consensus 93 ~~D~~~~~~~~~~--~~~vv~NlPY~ 116 (272)
T PRK00274 93 EGDALKVDLSELQ--PLKVVANLPYN 116 (272)
T ss_pred EChhhcCCHHHcC--cceEEEeCCcc
Confidence 9999998865321 24677775443
No 133
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.5e-09 Score=95.83 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=69.3
Q ss_pred EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEE
Q psy17227 58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIV 137 (268)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv 137 (268)
+|||||||+|.+++.+|...+...|+|+|+|+.++.+|+ +++.. +|. .++.++++|..+-- ...+|+|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~--~Na~~----~~l--~~~~~~~~dlf~~~----~~~fDlI 180 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR--ENAER----NGL--VRVLVVQSDLFEPL----RGKFDLI 180 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH--HHHHH----cCC--ccEEEEeeeccccc----CCceeEE
Confidence 799999999999999999887667999999998666655 44442 343 46777887865421 1257888
Q ss_pred EEeccccCcC------------H----------HHH----HHHHHhcCCCCcEEEEe
Q psy17227 138 FVNNFAFGPT------------V----------DHA----LKERFQDLKDGARIVSS 168 (268)
Q Consensus 138 ~~~~~~~~~~------------~----------~~~----l~e~~r~LkpGG~~i~~ 168 (268)
++|..+...+ + ... +.++-+.|+|||.+++-
T Consensus 181 VsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 181 VSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred EeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 8886543221 1 112 34445789999999875
No 134
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.08 E-value=5.1e-10 Score=100.89 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=70.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc----cccEEEEEcCCCCCcc---
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR----HGEFRLVKGDFLTEEH--- 127 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~----~~~i~~~~gD~~~l~~--- 127 (268)
++.+|||||||-|+-+..+.. .+...++|+|+|+. .++++++++++..+..... .-...|+.+|...-.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~-~~i~~~vg~Dis~~--si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQK-AKIKHYVGIDISEE--SIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHH-TT-SEEEEEES-HH--HHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred CCCeEEEecCCCchhHHHHHh-cCCCEEEEEeCCHH--HHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence 789999999999998888766 46677999999986 4444555553211110000 1257889999886442
Q ss_pred -cccccceEEEEEecccc-C--c--CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 128 -REKITQASIVFVNNFAF-G--P--TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 128 -~~~~~d~dvv~~~~~~~-~--~--~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
......+|+|++.-.+| . . .....++.+.+.|||||.||.|
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22223578998864332 2 2 2445688999999999999987
No 135
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.08 E-value=4.5e-10 Score=95.62 Aligned_cols=122 Identities=18% Similarity=0.281 Sum_probs=77.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhc----cccccEEE
Q psy17227 42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYG----KRHGEFRL 117 (268)
Q Consensus 42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~----~~~~~i~~ 117 (268)
..+.++++.++..++.+||+.|||.|.-+..+|.+ |.. |+|||+|+.++..+.............+ -..++|++
T Consensus 24 p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 24 PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 45666777788889999999999999999999875 776 9999999863333210000000000000 01247899
Q ss_pred EEcCCCCCcccccccceEEEEEeccc--cCcCH-HHHHHHHHhcCCCCcEEE
Q psy17227 118 VKGDFLTEEHREKITQASIVFVNNFA--FGPTV-DHALKERFQDLKDGARIV 166 (268)
Q Consensus 118 ~~gD~~~l~~~~~~~d~dvv~~~~~~--~~~~~-~~~l~e~~r~LkpGG~~i 166 (268)
.+||+++++... ...+|+|+=..++ ..|+. .+..+.+.+.|||||.++
T Consensus 102 ~~gDfF~l~~~~-~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 102 YCGDFFELPPED-VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp EES-TTTGGGSC-HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred EEcccccCChhh-cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 999999987432 2246777744332 34554 445677789999999943
No 136
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.08 E-value=1.9e-09 Score=90.55 Aligned_cols=121 Identities=17% Similarity=0.065 Sum_probs=78.8
Q ss_pred cCcHHHHHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEE
Q psy17227 38 ETSFDLISRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFR 116 (268)
Q Consensus 38 ~~~~~~~~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 116 (268)
++.......+++.+. ..++.+|||+|||+|.+++.++.. ++.+|+++|+++.++..++ ++++. .+. .+++
T Consensus 35 p~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr-~a~~V~~vE~~~~a~~~a~--~Nl~~----~~~--~~v~ 105 (199)
T PRK10909 35 PTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSR-YAAGATLLEMDRAVAQQLI--KNLAT----LKA--GNAR 105 (199)
T ss_pred cCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHH--HHHHH----hCC--CcEE
Confidence 344444455666653 356789999999999999865443 4557999999997555543 44432 332 3799
Q ss_pred EEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHh--cCCCCcEEEEe
Q psy17227 117 LVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQ--DLKDGARIVSS 168 (268)
Q Consensus 117 ~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r--~LkpGG~~i~~ 168 (268)
++++|+.+.-. .....+|+|+++..+...-....+..+.. .|+|++.+++.
T Consensus 106 ~~~~D~~~~l~-~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 106 VVNTNALSFLA-QPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred EEEchHHHHHh-hcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 99999876321 11124789999877543333344444443 48999988875
No 137
>PLN02366 spermidine synthase
Probab=99.07 E-value=9.1e-10 Score=98.37 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=79.3
Q ss_pred HHHHHHcC---CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227 45 SRMIDQIN---ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD 121 (268)
Q Consensus 45 ~~ll~~l~---~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD 121 (268)
.+++..+. ..+..+||+||||.|.+++.+++..+..+|+.+|+++.++.+++ +.+... ..+...++++++.+|
T Consensus 78 ~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar--~~f~~~--~~~~~dpRv~vi~~D 153 (308)
T PLN02366 78 QEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSK--KFFPDL--AVGFDDPRVNLHIGD 153 (308)
T ss_pred HHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHH--Hhhhhh--ccccCCCceEEEECh
Confidence 44554433 35568899999999999999987655567999999998666654 333321 112345689999999
Q ss_pred CCCCcccccccceEEEEEeccc-cCcC----HHHHHHHHHhcCCCCcEEEEe
Q psy17227 122 FLTEEHREKITQASIVFVNNFA-FGPT----VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 122 ~~~l~~~~~~~d~dvv~~~~~~-~~~~----~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.+.--......+|+|++...- +.+. -...++.+.+.|+|||.+++.
T Consensus 154 a~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 154 GVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred HHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 8653110001246788886542 1121 234578888999999999863
No 138
>KOG1975|consensus
Probab=99.07 E-value=8e-10 Score=96.86 Aligned_cols=115 Identities=20% Similarity=0.264 Sum_probs=77.6
Q ss_pred HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc-cccEEEEEcCCCCC---
Q psy17227 50 QINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR-HGEFRLVKGDFLTE--- 125 (268)
Q Consensus 50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~i~~~~gD~~~l--- 125 (268)
..-.++++.++|+|||.|+-++.+-+ .|...++|+||++. .+.+++++++. +...-.+ .-.+.|++||...-
T Consensus 112 ~~y~~~~~~~~~LgCGKGGDLlKw~k-AgI~~~igiDIAev--SI~qa~~RYrd-m~~r~~~~~f~a~f~~~Dc~~~~l~ 187 (389)
T KOG1975|consen 112 NLYTKRGDDVLDLGCGKGGDLLKWDK-AGIGEYIGIDIAEV--SINQARKRYRD-MKNRFKKFIFTAVFIAADCFKERLM 187 (389)
T ss_pred HHHhccccccceeccCCcccHhHhhh-hcccceEeeehhhc--cHHHHHHHHHH-HHhhhhcccceeEEEEeccchhHHH
Confidence 33467889999999999999988754 57777999999986 44445555543 1111100 11588999998863
Q ss_pred ---cccccccceEEEEEeccc---cC--cCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227 126 ---EHREKITQASIVFVNNFA---FG--PTVDHALKERFQDLKDGARIVSSKS 170 (268)
Q Consensus 126 ---~~~~~~~d~dvv~~~~~~---~~--~~~~~~l~e~~r~LkpGG~~i~~~~ 170 (268)
+++++ .+|+|++.-.+ |. .....+++++.+.|||||.||.|.|
T Consensus 188 d~~e~~dp--~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 188 DLLEFKDP--RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred HhccCCCC--CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 33333 26778764332 22 2355568999999999999998733
No 139
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.06 E-value=8.1e-10 Score=92.56 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=67.4
Q ss_pred EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc--ccccccce
Q psy17227 58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE--HREKITQA 134 (268)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~--~~~~~~d~ 134 (268)
.+||||||.|.+++.+|...+...++|||++.. .++++...+. ..+ ..|+.++++|+.. ++ ++++ .+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~--~v~~a~~~~~----~~~--l~Nv~~~~~da~~~l~~~~~~~--~v 89 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKK--RVAKALRKAE----KRG--LKNVRFLRGDARELLRRLFPPG--SV 89 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HH--HHHHHHHHHH----HHT--TSSEEEEES-CTTHHHHHSTTT--SE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchH--HHHHHHHHHH----hhc--ccceEEEEccHHHHHhhcccCC--ch
Confidence 899999999999999999998888999999986 4444333333 233 4699999999988 43 2222 45
Q ss_pred EEEEEeccccCcCH---------HHHHHHHHhcCCCCcEEEEe
Q psy17227 135 SIVFVNNFAFGPTV---------DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 135 dvv~~~~~~~~~~~---------~~~l~e~~r~LkpGG~~i~~ 168 (268)
|-|+++-.--|+.. ...+..+.++|||||.|.+.
T Consensus 90 ~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 90 DRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp EEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred heEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 66776532222221 23467788999999999754
No 140
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.05 E-value=1.5e-09 Score=94.89 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=68.9
Q ss_pred cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227 40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK 119 (268)
Q Consensus 40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 119 (268)
....+..+++.+++.++++|||||||+|.++..+++. +. +++|+|+++.++..++ +++. ..+++++++
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~-~v~~vEid~~~~~~l~--~~~~--------~~~~v~ii~ 81 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AK-KVYAIELDPRLAEFLR--DDEI--------AAGNVEIIE 81 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CC-EEEEEECCHHHHHHHH--HHhc--------cCCCEEEEE
Confidence 4566778999999999999999999999999999886 44 4999999997544433 2221 135899999
Q ss_pred cCCCCCcccccccceEEEEEeccccC
Q psy17227 120 GDFLTEEHREKITQASIVFVNNFAFG 145 (268)
Q Consensus 120 gD~~~l~~~~~~~d~dvv~~~~~~~~ 145 (268)
+|+.+++++ ++|.|++|..++.
T Consensus 82 ~D~~~~~~~----~~d~Vv~NlPy~i 103 (258)
T PRK14896 82 GDALKVDLP----EFNKVVSNLPYQI 103 (258)
T ss_pred eccccCCch----hceEEEEcCCccc
Confidence 999988764 2467888766554
No 141
>KOG1499|consensus
Probab=99.04 E-value=7.4e-10 Score=98.43 Aligned_cols=104 Identities=20% Similarity=0.326 Sum_probs=71.4
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227 52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI 131 (268)
Q Consensus 52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~ 131 (268)
.+-.+.+|||||||||-++...|+ .|+.+|+|||.|.- +..| .+.+ +..+.. ..|++++|.++++.+| .
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~ak-AGA~~V~aVe~S~i-a~~a--~~iv----~~N~~~-~ii~vi~gkvEdi~LP--~ 125 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAK-AGARKVYAVEASSI-ADFA--RKIV----KDNGLE-DVITVIKGKVEDIELP--V 125 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHH-hCcceEEEEechHH-HHHH--HHHH----HhcCcc-ceEEEeecceEEEecC--c
Confidence 356789999999999999986555 68888999999972 2222 2322 234443 4699999999997665 3
Q ss_pred cceEEEEEe---ccccCcCHHHHHHHHH-hcCCCCcEEE
Q psy17227 132 TQASIVFVN---NFAFGPTVDHALKERF-QDLKDGARIV 166 (268)
Q Consensus 132 ~d~dvv~~~---~~~~~~~~~~~l~e~~-r~LkpGG~~i 166 (268)
..+|+|+++ .+++...+...+.-.. +.|+|||.++
T Consensus 126 eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 126 EKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred cceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 467888765 1223333333333333 7899999986
No 142
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.03 E-value=9.3e-10 Score=108.70 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=75.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.+|.+|||+|||+|.+++.+|+ .|..+|++||+|+.++..++ ++++ ..+....+++++++|+.+.-- .....
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~-~Ga~~V~~vD~s~~al~~a~--~N~~----~ng~~~~~v~~i~~D~~~~l~-~~~~~ 608 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAAL-GGAKSTTTVDMSNTYLEWAE--RNFA----LNGLSGRQHRLIQADCLAWLK-EAREQ 608 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHH--HHHH----HhCCCccceEEEEccHHHHHH-HcCCC
Confidence 4578999999999999998876 47767999999998555544 4443 234432479999999876321 10125
Q ss_pred eEEEEEeccccCc------------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGP------------TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~------------~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|+|+++...+.. +....+..+.+.|+|||.+++.
T Consensus 609 fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 609 FDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred cCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 6889988654432 1233456667899999999875
No 143
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.6e-09 Score=87.41 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=58.5
Q ss_pred HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227 50 QINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE 129 (268)
Q Consensus 50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~ 129 (268)
..+.-.|.+|+|+|||||.+++.++ ..|..+|+|+|++++++.+++ +++.+ -.++++|+++|+.+..-
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~-~lGa~~V~~vdiD~~a~ei~r--~N~~~-------l~g~v~f~~~dv~~~~~-- 107 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAA-LLGASRVLAVDIDPEALEIAR--ANAEE-------LLGDVEFVVADVSDFRG-- 107 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHH-hcCCcEEEEEecCHHHHHHHH--HHHHh-------hCCceEEEEcchhhcCC--
Confidence 4466678899999999999998654 478888999999998666655 33332 13689999999998663
Q ss_pred cccceEEEEEecc
Q psy17227 130 KITQASIVFVNNF 142 (268)
Q Consensus 130 ~~~d~dvv~~~~~ 142 (268)
.+|.+++|..
T Consensus 108 ---~~dtvimNPP 117 (198)
T COG2263 108 ---KFDTVIMNPP 117 (198)
T ss_pred ---ccceEEECCC
Confidence 2346777754
No 144
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.02 E-value=3e-09 Score=99.91 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=75.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
+..+++.+.+.++.+|||+|||+|.+++.+|+.. .+|+|+|+|+.|+..|+ ++++ ..+. .+++|+++|+.
T Consensus 286 ~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~--~n~~----~~~~--~~v~~~~~d~~ 355 (443)
T PRK13168 286 VARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERAR--ENAR----RNGL--DNVTFYHANLE 355 (443)
T ss_pred HHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHH--HHHH----HcCC--CceEEEEeChH
Confidence 3456677788889999999999999999988763 35999999998666654 3333 2232 47999999997
Q ss_pred CC----cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 124 TE----EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 124 ~l----~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+. ++.+. .+|+|+++...-. ....+..+.+ ++|++.++++
T Consensus 356 ~~l~~~~~~~~--~fD~Vi~dPPr~g--~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 356 EDFTDQPWALG--GFDKVLLDPPRAG--AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred HhhhhhhhhcC--CCCEEEECcCCcC--hHHHHHHHHh-cCCCeEEEEE
Confidence 52 22222 3578888654322 3344544434 7888887765
No 145
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.01 E-value=1.2e-10 Score=97.51 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=77.5
Q ss_pred CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227 39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV 118 (268)
Q Consensus 39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~ 118 (268)
..+..+..++.+++..+=.++||||||||-.+..+-... ...+|+|||++|+..|..+-.+. ++.
T Consensus 109 ~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD-------------~L~ 173 (287)
T COG4976 109 SVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYD-------------TLY 173 (287)
T ss_pred ccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchH-------------HHH
Confidence 456788899999988888899999999999987664432 33899999998655554222121 122
Q ss_pred EcCCCCCcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 119 KGDFLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 119 ~gD~~~l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++|...+--......+|+|....+ .+.-++...+.-+...|+|||.|+++
T Consensus 174 ~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 174 VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEE
Confidence 223221100001124567665444 56778888999999999999999986
No 146
>PHA03412 putative methyltransferase; Provisional
Probab=99.00 E-value=2.9e-09 Score=90.85 Aligned_cols=94 Identities=18% Similarity=0.109 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHh---CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAAT---GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI 131 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~---~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~ 131 (268)
.+.+|||+|||+|.+++.++++. +...|+|||+++.+..+|+ ++ ..++.++++|+.+.++.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar--~n-----------~~~~~~~~~D~~~~~~~--- 112 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGK--RI-----------VPEATWINADALTTEFD--- 112 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHH--hh-----------ccCCEEEEcchhccccc---
Confidence 46799999999999999888753 2336999999997555554 11 13688999999876542
Q ss_pred cceEEEEEeccccCcC-------------HHHHHHHHHhcCCCCcE
Q psy17227 132 TQASIVFVNNFAFGPT-------------VDHALKERFQDLKDGAR 164 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~~-------------~~~~l~e~~r~LkpGG~ 164 (268)
..+|+|++|..++... ....+....+.++||+.
T Consensus 113 ~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 113 TLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 2568899987654211 23345666676666665
No 147
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.98 E-value=5.2e-09 Score=93.48 Aligned_cols=122 Identities=18% Similarity=0.264 Sum_probs=87.3
Q ss_pred ccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEE
Q psy17227 37 GETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFR 116 (268)
Q Consensus 37 g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 116 (268)
+...+.....+++...+++|+.|||==||||++++.+. ..|+. ++|.|++..|+.-+ +.|++.+ + .....
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEag-l~G~~-viG~Did~~mv~ga--k~Nl~~y----~--i~~~~ 248 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAG-LMGAR-VIGSDIDERMVRGA--KINLEYY----G--IEDYP 248 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhh-hcCce-EeecchHHHHHhhh--hhhhhhh----C--cCcee
Confidence 44555555667788899999999999999999999854 47888 99999999755554 4555532 2 23565
Q ss_pred EEEc-CCCCCcccccccceEEEEEeccc------cCcC----HHHHHHHHHhcCCCCcEEEEeCC
Q psy17227 117 LVKG-DFLTEEHREKITQASIVFVNNFA------FGPT----VDHALKERFQDLKDGARIVSSKS 170 (268)
Q Consensus 117 ~~~g-D~~~l~~~~~~~d~dvv~~~~~~------~~~~----~~~~l~e~~r~LkpGG~~i~~~~ 170 (268)
+..+ |+.++|++++++ |.|.+...+ .... ..+.+....++||+||++++.-+
T Consensus 249 ~~~~~Da~~lpl~~~~v--daIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 249 VLKVLDATNLPLRDNSV--DAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEEecccccCCCCCCcc--ceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 6666 999999887644 556665432 2222 34556777899999999998634
No 148
>PRK01581 speE spermidine synthase; Validated
Probab=98.97 E-value=1.7e-09 Score=97.66 Aligned_cols=113 Identities=10% Similarity=-0.054 Sum_probs=74.8
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
....+||+||||+|..++.+++..+..+|++||+++.++.+|+....+... ...+...++++++.+|+.+.-. .....
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~-~~~~~~DpRV~vvi~Da~~fL~-~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSL-NKSAFFDNRVNVHVCDAKEFLS-SPSSL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchh-ccccCCCCceEEEECcHHHHHH-hcCCC
Confidence 344689999999999998888755556799999999877776621111110 0011234699999999987321 11234
Q ss_pred eEEEEEeccccC----cC--HHHHHHHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFG----PT--VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~----~~--~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|+|+++..-.. .. -...+..+.+.|+|||++++.
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 788988743110 00 134578888999999999875
No 149
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.96 E-value=4.9e-09 Score=94.24 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=71.9
Q ss_pred HHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227 48 IDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH 127 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~ 127 (268)
.+.+...++.+|||+|||+|.+++.+|.. +. +|+|+|+|+.++..++ ++++ ..+. .+++|+++|+.++..
T Consensus 166 ~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~-~V~gvD~s~~av~~A~--~n~~----~~~l--~~v~~~~~D~~~~~~ 235 (315)
T PRK03522 166 RDWVRELPPRSMWDLFCGVGGFGLHCATP-GM-QLTGIEISAEAIACAK--QSAA----ELGL--TNVQFQALDSTQFAT 235 (315)
T ss_pred HHHHHhcCCCEEEEccCCCCHHHHHHHhc-CC-EEEEEeCCHHHHHHHH--HHHH----HcCC--CceEEEEcCHHHHHH
Confidence 34444446789999999999999998874 44 5999999998655544 3333 2333 479999999987542
Q ss_pred cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 128 REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 128 ~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.. ...+|+|+++... ......+.+....++|++.++++
T Consensus 236 ~~-~~~~D~Vv~dPPr--~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 236 AQ-GEVPDLVLVNPPR--RGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred hc-CCCCeEEEECCCC--CCccHHHHHHHHHcCCCeEEEEE
Confidence 11 1246788887441 12233444555567888877765
No 150
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.95 E-value=4.7e-10 Score=93.33 Aligned_cols=98 Identities=14% Similarity=0.180 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCCC-CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227 43 LISRMIDQINATP-DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD 121 (268)
Q Consensus 43 ~~~~ll~~l~~~~-~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD 121 (268)
-+..+++.+.-.| +..|-|+|||.+.++..+. .+. +|...|+-.. +-.++.+|
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~--~~~-~V~SfDLva~-----------------------n~~Vtacd 112 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP--NKH-KVHSFDLVAP-----------------------NPRVTACD 112 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH----S----EEEEESS-S-----------------------STTEEES-
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc--cCc-eEEEeeccCC-----------------------CCCEEEec
Confidence 4566777776444 5689999999999985321 223 4999999852 22378899
Q ss_pred CCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 122 FLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 122 ~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.+.|+++.+ +|++++...+...+....+.|.+|+|||||.+.+.
T Consensus 113 ia~vPL~~~s--vDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 113 IANVPLEDES--VDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp TTS-S--TT---EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEE
T ss_pred CccCcCCCCc--eeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEE
Confidence 9999998765 45555555568899999999999999999999987
No 151
>KOG2361|consensus
Probab=98.94 E-value=1.7e-09 Score=91.44 Aligned_cols=102 Identities=13% Similarity=0.208 Sum_probs=71.3
Q ss_pred EEEEEcCCCCHHHHHHHHHhCC--cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC----cccccc
Q psy17227 58 VFVDLGSGVGQVVLQVAAATGC--KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE----EHREKI 131 (268)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~~~--~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l----~~~~~~ 131 (268)
++|+||||.|+....+.+..+. -++++.|.||.++.+-+.+... ...++.-.+-|+... |....+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~---------~e~~~~afv~Dlt~~~~~~~~~~~s 144 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY---------DESRVEAFVWDLTSPSLKEPPEEGS 144 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc---------chhhhcccceeccchhccCCCCcCc
Confidence 7999999999999999887655 4799999999855554421111 122444444455432 222333
Q ss_pred cce-EEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 132 TQA-SIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 132 ~d~-dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.|. .+||+-+.++......++.+++++|||||.+++.
T Consensus 145 vD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 145 VDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred cceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 443 3456656678888999999999999999999996
No 152
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.93 E-value=8.2e-09 Score=90.81 Aligned_cols=109 Identities=13% Similarity=0.119 Sum_probs=73.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-ccccccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-EHREKIT 132 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~~~~~~~ 132 (268)
..+.+||+||||+|.++..+++..+..+++++|+++.++..++ +.+.... .....++++++.+|..+. .... .
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~--~~~~~~~--~~~~~~~v~i~~~D~~~~l~~~~--~ 144 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSK--KFLPSLA--GSYDDPRVDLQIDDGFKFLADTE--N 144 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHH--HHhHhhc--ccccCCceEEEECchHHHHHhCC--C
Confidence 3455999999999999998877654567999999997555544 3332211 012235799999998652 1111 2
Q ss_pred ceEEEEEecccc-CcC----HHHHHHHHHhcCCCCcEEEEe
Q psy17227 133 QASIVFVNNFAF-GPT----VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 133 d~dvv~~~~~~~-~~~----~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+|+|+++.... .+. ....++.+.+.|+|||++++.
T Consensus 145 ~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 145 TFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 467888876521 111 345678888999999999975
No 153
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.92 E-value=1.6e-08 Score=88.19 Aligned_cols=91 Identities=16% Similarity=0.218 Sum_probs=66.5
Q ss_pred cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227 40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK 119 (268)
Q Consensus 40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 119 (268)
....+.++++.+++.++++|||||||+|.++..+++.. .. ++|+|+++.+...++ +++. ...++++++
T Consensus 14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~-v~~iE~d~~~~~~l~--~~~~--------~~~~v~v~~ 81 (253)
T TIGR00755 14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KK-VTAIEIDPRLAEILR--KLLS--------LYERLEVIE 81 (253)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-Cc-EEEEECCHHHHHHHH--HHhC--------cCCcEEEEE
Confidence 45667889999999999999999999999999998865 33 999999997444332 2211 135899999
Q ss_pred cCCCCCcccccccce-EEEEEecccc
Q psy17227 120 GDFLTEEHREKITQA-SIVFVNNFAF 144 (268)
Q Consensus 120 gD~~~l~~~~~~~d~-dvv~~~~~~~ 144 (268)
+|+.++++.. ++. ++|++|..++
T Consensus 82 ~D~~~~~~~~--~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 82 GDALKVDLPD--FPKQLKVVSNLPYN 105 (253)
T ss_pred CchhcCChhH--cCCcceEEEcCChh
Confidence 9999988652 221 2566664444
No 154
>KOG1500|consensus
Probab=98.91 E-value=7.4e-09 Score=91.30 Aligned_cols=110 Identities=16% Similarity=0.303 Sum_probs=77.7
Q ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
+++.--.-.+..|||+|||.|-++..+| ..|+++|++|+.|+ |...|+ +.+....+ .++|.+|.|-++++.
T Consensus 169 il~N~sDF~~kiVlDVGaGSGILS~FAa-qAGA~~vYAvEAS~-MAqyA~------~Lv~~N~~-~~rItVI~GKiEdie 239 (517)
T KOG1500|consen 169 ILENHSDFQDKIVLDVGAGSGILSFFAA-QAGAKKVYAVEASE-MAQYAR------KLVASNNL-ADRITVIPGKIEDIE 239 (517)
T ss_pred HHhcccccCCcEEEEecCCccHHHHHHH-HhCcceEEEEehhH-HHHHHH------HHHhcCCc-cceEEEccCcccccc
Confidence 3333333467889999999999998655 57898999999997 344433 32323333 368999999999988
Q ss_pred ccccccceEEEEEecc---ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 HREKITQASIVFVNNF---AFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 ~~~~~~d~dvv~~~~~---~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+++ .+|+++++.. ++.+.+....-...+.|||.|..+=+
T Consensus 240 LPE---k~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 240 LPE---KVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred Cch---hccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 775 5788888644 34444555555555899999987643
No 155
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.91 E-value=2.4e-08 Score=83.28 Aligned_cols=115 Identities=14% Similarity=0.147 Sum_probs=74.8
Q ss_pred HHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 46 RMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 46 ~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
.++..+. .-++.+|||++||+|.+++.++.+ |+.+|++||.++.++..++ ++++. .+. ..+++++++|+.+
T Consensus 39 a~f~~l~~~~~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~--~N~~~----~~~-~~~~~~~~~D~~~ 110 (189)
T TIGR00095 39 LFFNILRPEIQGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLK--ENLAL----LKS-GEQAEVVRNSALR 110 (189)
T ss_pred HHHHHHHHhcCCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHH--HHHHH----hCC-cccEEEEehhHHH
Confidence 3444442 346889999999999999987764 6667999999997555543 44432 232 2479999999965
Q ss_pred C-c-ccccccceEEEEEeccccCcCHHHHHHHHH--hcCCCCcEEEEe
Q psy17227 125 E-E-HREKITQASIVFVNNFAFGPTVDHALKERF--QDLKDGARIVSS 168 (268)
Q Consensus 125 l-~-~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~--r~LkpGG~~i~~ 168 (268)
. . +......+|+|+....+........+..+. ..|+++|.+++-
T Consensus 111 ~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 111 ALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred HHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 3 2 111111247888776654333444555444 478999988874
No 156
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.90 E-value=9.7e-09 Score=91.28 Aligned_cols=93 Identities=13% Similarity=0.180 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227 41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG 120 (268)
Q Consensus 41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g 120 (268)
...+.++++.+++.++++|||||||+|.++..++.. +. +|+|+|+++.++..++ +++. ..+. .++++++++
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~-~V~avEiD~~li~~l~--~~~~----~~~~-~~~v~ii~~ 92 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AK-KVIAIEIDPRMVAELK--KRFQ----NSPL-ASKLEVIEG 92 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CC-cEEEEECCHHHHHHHH--HHHH----hcCC-CCcEEEEEC
Confidence 466778999999999999999999999999988875 33 4999999997555443 3332 1221 358999999
Q ss_pred CCCCCcccccccceEEEEEeccccCc
Q psy17227 121 DFLTEEHREKITQASIVFVNNFAFGP 146 (268)
Q Consensus 121 D~~~l~~~~~~~d~dvv~~~~~~~~~ 146 (268)
|+.+.+++ .+|+|++|..++..
T Consensus 93 Dal~~~~~----~~d~VvaNlPY~Is 114 (294)
T PTZ00338 93 DALKTEFP----YFDVCVANVPYQIS 114 (294)
T ss_pred CHhhhccc----ccCEEEecCCcccC
Confidence 99886643 34677777665543
No 157
>PRK03612 spermidine synthase; Provisional
Probab=98.90 E-value=4.2e-09 Score=100.78 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=74.8
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
+++.+|||||||+|..++.+++..+..+++++|+++.++.+++.+..+.. ........++++++++|..+.-- .....
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~-~~~~~~~dprv~vi~~Da~~~l~-~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRA-LNGGALDDPRVTVVNDDAFNWLR-KLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchh-hhccccCCCceEEEEChHHHHHH-hCCCC
Confidence 45678999999999999998874333679999999987666652101111 00011234689999999987321 11135
Q ss_pred eEEEEEecccc-CcCH-----HHHHHHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAF-GPTV-----DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~-~~~~-----~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|+|+++.... .+.. ...++.+.+.|||||++++.
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 68888875422 1211 23577888999999999975
No 158
>PLN02672 methionine S-methyltransferase
Probab=98.90 E-value=9.7e-09 Score=104.25 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=57.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHH-HHhc---------cccccEEEEEcCCCCC
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWM-QWYG---------KRHGEFRLVKGDFLTE 125 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~-~~~~---------~~~~~i~~~~gD~~~l 125 (268)
+.+|||||||+|.+++.+++..+..+|+|+|+|+.++.+|+ ++++... ...| ....+++|+++|+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~--~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW--INLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH--HHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence 46899999999999999999877567999999998777765 3333200 0000 0113799999999764
Q ss_pred cccccccceEEEEEecc
Q psy17227 126 EHREKITQASIVFVNNF 142 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~~ 142 (268)
. .+....+|+|++|..
T Consensus 197 ~-~~~~~~fDlIVSNPP 212 (1082)
T PLN02672 197 C-RDNNIELDRIVGCIP 212 (1082)
T ss_pred c-cccCCceEEEEECCC
Confidence 3 111114788888765
No 159
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.89 E-value=9.6e-09 Score=96.21 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHH---h-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAA---T-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI 131 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~---~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~ 131 (268)
+..|+|||||+|-++..+++. . +..+|++||.|+.+....+ +. ++..+. .++|+++++|++++..++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~--~~----v~~n~w-~~~V~vi~~d~r~v~lpe-- 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ--KR----VNANGW-GDKVTVIHGDMREVELPE-- 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH--HH----HHHTTT-TTTEEEEES-TTTSCHSS--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH--HH----HHhcCC-CCeEEEEeCcccCCCCCC--
Confidence 578999999999998655432 2 3457999999986333222 11 122333 258999999999988664
Q ss_pred cceEEEEEecc-c--cCcCHHHHHHHHHhcCCCCcEEE
Q psy17227 132 TQASIVFVNNF-A--FGPTVDHALKERFQDLKDGARIV 166 (268)
Q Consensus 132 ~d~dvv~~~~~-~--~~~~~~~~l~e~~r~LkpGG~~i 166 (268)
.+|+|+++.. . ..+-....+...-|.|||||.++
T Consensus 258 -kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 258 -KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred -ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 6899988644 2 22334455666668999999987
No 160
>KOG1661|consensus
Probab=98.89 E-value=5.3e-09 Score=86.66 Aligned_cols=116 Identities=20% Similarity=0.306 Sum_probs=84.6
Q ss_pred HHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHHhCCcEE--EEEeCCCChhHHHHHHHHHHHHHH----HhccccccE
Q psy17227 44 ISRMIDQIN--ATPDDVFVDLGSGVGQVVLQVAAATGCKIC--WGVEKADLPAKYAEMHTVFKRWMQ----WYGKRHGEF 115 (268)
Q Consensus 44 ~~~ll~~l~--~~~~~~vLDiGCG~G~~~~~la~~~~~~~v--~GiD~s~~~~~~a~~~~~~~~~~~----~~~~~~~~i 115 (268)
-..+++.|. +.||-++||||+|+|.++..++...++.-. +|||.-++.+..++ +++++... .-..+..++
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk--~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSK--KNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHH--HHHHhhccCchhhhhhccCce
Confidence 346777776 899999999999999999988877666533 99999998666655 45554331 112234689
Q ss_pred EEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 116 RLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 116 ~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.++.||.....-+. ..+|.|.+.+. ..+..+++...|||||++++-
T Consensus 147 ~ivvGDgr~g~~e~--a~YDaIhvGAa-----a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 147 SIVVGDGRKGYAEQ--APYDAIHVGAA-----ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EEEeCCccccCCcc--CCcceEEEccC-----ccccHHHHHHhhccCCeEEEe
Confidence 99999998865333 34577887633 345567888999999999983
No 161
>KOG3045|consensus
Probab=98.88 E-value=6.9e-09 Score=88.53 Aligned_cols=95 Identities=16% Similarity=0.242 Sum_probs=73.6
Q ss_pred HHHHHHHcCCCCC-CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 44 ISRMIDQINATPD-DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 44 ~~~ll~~l~~~~~-~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
+..++.++..+|+ ..|-|+|||-+.++. .... .|+..|+-+. +-+++.+|+
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~~~~-kV~SfDL~a~-----------------------~~~V~~cDm 219 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS----SERH-KVHSFDLVAV-----------------------NERVIACDM 219 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh----cccc-ceeeeeeecC-----------------------CCceeeccc
Confidence 4567888876664 468999999998864 2233 4899999752 455788999
Q ss_pred CCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 123 LTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 123 ~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+.|+++.+-| |+++...+...++...+.|++|+|||||.+.+.
T Consensus 220 ~~vPl~d~svD--vaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 220 RNVPLEDESVD--VAVFCLSLMGTNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred cCCcCccCccc--EEEeeHhhhcccHHHHHHHHHHHhccCceEEEE
Confidence 99999887554 444444457899999999999999999999987
No 162
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.87 E-value=2.4e-08 Score=85.85 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=76.1
Q ss_pred CcHHHHHHHHHHcC--C---CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccc
Q psy17227 39 TSFDLISRMIDQIN--A---TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG 113 (268)
Q Consensus 39 ~~~~~~~~ll~~l~--~---~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 113 (268)
.+.+.+.+++..-+ . ....++||||.|.|..+..++..+.. |++.|+|+. |+.++++ .
T Consensus 73 fS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~------Mr~rL~~---------k 135 (265)
T PF05219_consen 73 FSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPP------MRWRLSK---------K 135 (265)
T ss_pred ecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcce--EEeecCCHH------HHHHHHh---------C
Confidence 34456666665441 1 24567999999999999999876544 899999986 4444442 1
Q ss_pred cEEEEEcCCCCCcccccccceEEEEEeccc-cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 114 EFRLVKGDFLTEEHREKITQASIVFVNNFA-FGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 114 ~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
..+++ |..++. +....+|+|+|.+.+ ...++...++.+++.|+|+|++++.
T Consensus 136 g~~vl--~~~~w~--~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 136 GFTVL--DIDDWQ--QTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred CCeEE--ehhhhh--ccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 33333 232332 122467899998876 5678999999999999999999865
No 163
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.87 E-value=2.9e-08 Score=84.92 Aligned_cols=104 Identities=15% Similarity=0.201 Sum_probs=67.0
Q ss_pred HHHHHHHHcCC-CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccE-EEEEc
Q psy17227 43 LISRMIDQINA-TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEF-RLVKG 120 (268)
Q Consensus 43 ~~~~ll~~l~~-~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i-~~~~g 120 (268)
.+..+++.+++ .++.+|||+|||||.++..+++. |..+|+|+|+++.| +.. .+++ +.++ .+...
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~--l~~---~l~~--------~~~v~~~~~~ 127 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQ--LAE---KLRQ--------DERVKVLERT 127 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHH--HHH---HHhc--------CCCeeEeecC
Confidence 34567777776 47889999999999999988875 77779999999863 221 1211 2233 24444
Q ss_pred CCCCCcccc---cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 121 DFLTEEHRE---KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 121 D~~~l~~~~---~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
|+..+...+ +...+|++|+.. ...+..+.+.|+| |.+++.
T Consensus 128 ni~~~~~~~~~~d~~~~DvsfiS~-------~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 128 NIRYVTPADIFPDFATFDVSFISL-------ISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred CcccCCHhHcCCCceeeeEEEeeh-------HhHHHHHHHHhCc-CeEEEE
Confidence 555332111 222457666642 2357788899999 877764
No 164
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.86 E-value=1.7e-08 Score=90.40 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhcCCccccccCCCCCCCCccc--CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHH-------hC
Q psy17227 8 RHIIQQTYNQSVTEPEKLNVYQPFSPFVYGE--TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAA-------TG 78 (268)
Q Consensus 8 ~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~--~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~-------~~ 78 (268)
++++.++|...+.....- .....|. +....+..+++.+...++.+|||-.||+|+++..+... ..
T Consensus 3 ~d~~g~~yE~~l~~~~~~------~~k~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~ 76 (311)
T PF02384_consen 3 RDILGDLYEYFLKKFAKE------SRKKLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIK 76 (311)
T ss_dssp HHHHHHHHHHHHHHHHHC------TTTSCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHC
T ss_pred ccHHHHHHHHHHHHHHHH------hccccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccc
Confidence 578888898865432100 1111111 22334455666778888999999999999999887763 24
Q ss_pred CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccCc------------
Q psy17227 79 CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGP------------ 146 (268)
Q Consensus 79 ~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~------------ 146 (268)
...++|+|+++.+..+++++-.+ .+....+..+.++|....+.......+|+|++|..+-..
T Consensus 77 ~~~i~G~ei~~~~~~la~~nl~l------~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~ 150 (311)
T PF02384_consen 77 EINIYGIEIDPEAVALAKLNLLL------HGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDER 150 (311)
T ss_dssp CEEEEEEES-HHHHHHHHHHHHH------TTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCC
T ss_pred cceeEeecCcHHHHHHHHhhhhh------hccccccccccccccccccccccccccccccCCCCcccccccccccccccc
Confidence 55699999999877777643322 222233567999998765533223467889888542111
Q ss_pred ---------CH-HHHHHHHHhcCCCCcEEEEe
Q psy17227 147 ---------TV-DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 147 ---------~~-~~~l~e~~r~LkpGG~~i~~ 168 (268)
.. ...+..+.+.||+||++++.
T Consensus 151 ~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 151 FKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp CTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 01 12457788999999997654
No 165
>PLN02476 O-methyltransferase
Probab=98.86 E-value=2.5e-08 Score=87.53 Aligned_cols=109 Identities=14% Similarity=0.098 Sum_probs=78.9
Q ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc-c
Q psy17227 51 INATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE-H 127 (268)
Q Consensus 51 l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~-~ 127 (268)
+...+..+|||||||+|..++.+|...+ ..+++++|.++....+|+ ++++ ..|.. ++++++.||+.+ ++ +
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar--~n~~----~aGl~-~~I~li~GdA~e~L~~l 186 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK--RYYE----LAGVS-HKVNVKHGLAAESLKSM 186 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--HHHH----HcCCC-CcEEEEEcCHHHHHHHH
Confidence 3556678999999999999999988654 336999999997554443 4444 35654 589999999976 33 1
Q ss_pred c-cc-ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 128 R-EK-ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 128 ~-~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
. .. ...+|+||+.+. .......+..+.+.|+|||.+++-
T Consensus 187 ~~~~~~~~FD~VFIDa~--K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 187 IQNGEGSSYDFAFVDAD--KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HhcccCCCCCEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 1 11 124678998743 334566778888999999999985
No 166
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.84 E-value=2.1e-08 Score=93.94 Aligned_cols=112 Identities=18% Similarity=0.229 Sum_probs=72.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
..+++.+++.++.+|||+|||+|.+++.+|+.. .+|+|+|+++.++..++ ++++ ..+ ..+++|+++|+.+
T Consensus 282 ~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~--~n~~----~~~--~~nv~~~~~d~~~ 351 (431)
T TIGR00479 282 DRALEALELQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQ--QNAE----LNG--IANVEFLAGTLET 351 (431)
T ss_pred HHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHH--HHHH----HhC--CCceEEEeCCHHH
Confidence 345666677888999999999999999988753 35999999998655544 4443 233 2489999999976
Q ss_pred C-c-ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 E-E-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l-~-~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
. + +......+|+|+++..-.. -....+..+ ..++|++.++++
T Consensus 352 ~l~~~~~~~~~~D~vi~dPPr~G-~~~~~l~~l-~~l~~~~ivyvs 395 (431)
T TIGR00479 352 VLPKQPWAGQIPDVLLLDPPRKG-CAAEVLRTI-IELKPERIVYVS 395 (431)
T ss_pred HHHHHHhcCCCCCEEEECcCCCC-CCHHHHHHH-HhcCCCEEEEEc
Confidence 3 2 1111113577877543211 023334443 348898877664
No 167
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.84 E-value=3.2e-08 Score=84.52 Aligned_cols=104 Identities=20% Similarity=0.208 Sum_probs=72.1
Q ss_pred CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--ccccccc
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKITQ 133 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~~d 133 (268)
...+||||||.|.++..+|+..+..-++|||+... .++++.+.+. +.+. .|+.++++|+..+- +.++ ..
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~--~v~~~l~k~~----~~~l--~Nlri~~~DA~~~l~~~~~~-~s 119 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVP--GVAKALKKIK----ELGL--KNLRLLCGDAVEVLDYLIPD-GS 119 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehH--HHHHHHHHHH----HcCC--CcEEEEcCCHHHHHHhcCCC-CC
Confidence 35799999999999999999998877999999986 4555444444 3343 39999999998743 1111 13
Q ss_pred eEEEEEeccccCcCH---------HHHHHHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTV---------DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~---------~~~l~e~~r~LkpGG~~i~~ 168 (268)
.|-|+++-.--|+.. ...+..+.++|||||.|.+.
T Consensus 120 l~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 120 LDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred eeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 455665422122321 22467777999999999865
No 168
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.84 E-value=1.2e-08 Score=86.02 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=77.0
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc-ccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE-HRE 129 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~-~~~ 129 (268)
.....+||+||||+|.-++.+|...+. .+++.+|+++....+| +++++ ..|.. .+|+++.||+.+ ++ +..
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A--~~~~~----~ag~~-~~I~~~~gda~~~l~~l~~ 115 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIA--RENFR----KAGLD-DRIEVIEGDALEVLPELAN 115 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHH--HHHHH----HTTGG-GGEEEEES-HHHHHHHHHH
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHH--HHHHH----hcCCC-CcEEEEEeccHhhHHHHHh
Confidence 345578999999999999999987653 4799999999744443 34444 35553 589999999976 23 211
Q ss_pred c--ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 130 K--ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 130 ~--~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
. ...+|+||+.+. -.+....+..+.+.|+|||.+++-
T Consensus 116 ~~~~~~fD~VFiDa~--K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 116 DGEEGQFDFVFIDAD--KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp TTTTTSEEEEEEEST--GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCceeEEEEccc--ccchhhHHHHHhhhccCCeEEEEc
Confidence 1 135889999854 234566788888999999999995
No 169
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.83 E-value=3e-08 Score=83.94 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=79.7
Q ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE-cCCCCCccc
Q psy17227 51 INATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK-GDFLTEEHR 128 (268)
Q Consensus 51 l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~-gD~~~l~~~ 128 (268)
+......+||+||.+.|.-++.+|...+ ..+++.||+++++..+|+ ++++ +.|.. ++++++. ||..+.--.
T Consensus 55 ~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~--~n~~----~ag~~-~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 55 ARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIAR--ENLA----EAGVD-DRIELLLGGDALDVLSR 127 (219)
T ss_pred HHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHH--HHHH----HcCCc-ceEEEEecCcHHHHHHh
Confidence 3556778999999999999999999877 557999999998655554 4444 35553 4688888 587653211
Q ss_pred ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 129 EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 129 ~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.....+|+||+.+- ..+....+..+.+.|+|||.+++-
T Consensus 128 ~~~~~fDliFIDad--K~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 128 LLDGSFDLVFIDAD--KADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred ccCCCccEEEEeCC--hhhCHHHHHHHHHHhCCCcEEEEe
Confidence 11235688999733 344567788888999999999985
No 170
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.80 E-value=1.8e-07 Score=77.39 Aligned_cols=123 Identities=16% Similarity=0.148 Sum_probs=77.8
Q ss_pred ccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcE---------EEEEeCCCChhHHHHHHHHHHHHHHH
Q psy17227 37 GETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKI---------CWGVEKADLPAKYAEMHTVFKRWMQW 107 (268)
Q Consensus 37 g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~---------v~GiD~s~~~~~~a~~~~~~~~~~~~ 107 (268)
+++.+.....++...++++++.|||--||+|.+.+++|....... ++|.|+++.++..++ ++++.
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~--~N~~~---- 83 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAR--ENLKA---- 83 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHH--HHHHH----
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHH--HHHHh----
Confidence 335555666788888999999999999999999999887654443 789999998555444 44442
Q ss_pred hccccccEEEEEcCCCCCcccccccceEEEEEecccc---C--cCHH----HHHHHHHhcCCCCcEEEEe
Q psy17227 108 YGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAF---G--PTVD----HALKERFQDLKDGARIVSS 168 (268)
Q Consensus 108 ~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~---~--~~~~----~~l~e~~r~LkpGG~~i~~ 168 (268)
.|. ...+.+.++|+.++++.+. .+|+|++|..+- . .+.. ..+.++.++|++...++++
T Consensus 84 ag~-~~~i~~~~~D~~~l~~~~~--~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 84 AGV-EDYIDFIQWDARELPLPDG--SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp TT--CGGEEEEE--GGGGGGTTS--BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred ccc-CCceEEEecchhhcccccC--CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 343 2479999999999995444 456788886531 1 1112 2246666889995555554
No 171
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.80 E-value=3.5e-08 Score=90.72 Aligned_cols=107 Identities=18% Similarity=0.174 Sum_probs=69.8
Q ss_pred HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc
Q psy17227 49 DQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR 128 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~ 128 (268)
..++..++.+|||+|||+|.+++.+|.. + .+|+|||+++.++..++ ++++ ..+. .+++|+++|+.++...
T Consensus 227 ~~l~~~~~~~vLDL~cG~G~~~l~la~~-~-~~v~~vE~~~~av~~a~--~N~~----~~~~--~~~~~~~~d~~~~~~~ 296 (374)
T TIGR02085 227 QWVREIPVTQMWDLFCGVGGFGLHCAGP-D-TQLTGIEIESEAIACAQ--QSAQ----MLGL--DNLSFAALDSAKFATA 296 (374)
T ss_pred HHHHhcCCCEEEEccCCccHHHHHHhhc-C-CeEEEEECCHHHHHHHH--HHHH----HcCC--CcEEEEECCHHHHHHh
Confidence 3344456789999999999999988853 4 45999999998655544 4443 2232 3899999999764311
Q ss_pred ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 129 EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 129 ~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
....+|+|+++... . .....+.+....++|++.++++
T Consensus 297 -~~~~~D~vi~DPPr-~-G~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 297 -QMSAPELVLVNPPR-R-GIGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred -cCCCCCEEEECCCC-C-CCcHHHHHHHHhcCCCeEEEEE
Confidence 11236788887542 1 2222333333458999888875
No 172
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.75 E-value=5.8e-08 Score=89.33 Aligned_cols=110 Identities=15% Similarity=0.155 Sum_probs=77.9
Q ss_pred HHHHHcCCC-CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 46 RMIDQINAT-PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 46 ~ll~~l~~~-~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
.+++.+... ++.+|||++||+|..++.+|...+..+|+++|+++.++..++ ++++ .++. .++++.++|+.+
T Consensus 47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~--~N~~----~N~~--~~~~v~~~Da~~ 118 (382)
T PRK04338 47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK--KNLE----LNGL--ENEKVFNKDANA 118 (382)
T ss_pred HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH--HHHH----HhCC--CceEEEhhhHHH
Confidence 344444332 457899999999999999998877667999999998666554 3333 2232 367899999976
Q ss_pred CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.... ..+|+|.++.+ ......+....+.+++||.+.++
T Consensus 119 ~l~~~--~~fD~V~lDP~---Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 119 LLHEE--RKFDVVDIDPF---GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred HHhhc--CCCCEEEECCC---CCcHHHHHHHHHHhcCCCEEEEE
Confidence 43211 24678888754 33456677778889999999987
No 173
>KOG1331|consensus
Probab=98.74 E-value=1.4e-08 Score=88.04 Aligned_cols=130 Identities=19% Similarity=0.240 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEE
Q psy17227 6 LLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGV 85 (268)
Q Consensus 6 ~~~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~Gi 85 (268)
+=+..++.||+.+.++ |+...+ ..+..+..++.... .|..++|+|||.|..+.. ..++. ++|.
T Consensus 9 leqeyVh~IYd~ia~~---------fs~tr~--~~Wp~v~qfl~~~~--~gsv~~d~gCGngky~~~---~p~~~-~ig~ 71 (293)
T KOG1331|consen 9 LEQEYVHSIYDKIATH---------FSATRA--APWPMVRQFLDSQP--TGSVGLDVGCGNGKYLGV---NPLCL-IIGC 71 (293)
T ss_pred HHHHHhHHHHHHhhhh---------cccccc--CccHHHHHHHhccC--CcceeeecccCCcccCcC---CCcce-eeec
Confidence 3356688899998854 333222 23455667766654 488899999999998742 23454 8999
Q ss_pred eCCCChhHHHHHHHHHHHHHHHhccccccE-EEEEcCCCCCcccccccceEEEEEeccccCcC---HHHHHHHHHhcCCC
Q psy17227 86 EKADLPAKYAEMHTVFKRWMQWYGKRHGEF-RLVKGDFLTEEHREKITQASIVFVNNFAFGPT---VDHALKERFQDLKD 161 (268)
Q Consensus 86 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~i-~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~---~~~~l~e~~r~Lkp 161 (268)
|++...+..++ ..+. ....+|+.++|+.+.++|+ ++.+..++|... ...+++|+.|+|+|
T Consensus 72 D~c~~l~~~ak---------------~~~~~~~~~ad~l~~p~~~~s~d~-~lsiavihhlsT~~RR~~~l~e~~r~lrp 135 (293)
T KOG1331|consen 72 DLCTGLLGGAK---------------RSGGDNVCRADALKLPFREESFDA-ALSIAVIHHLSTRERRERALEELLRVLRP 135 (293)
T ss_pred chhhhhccccc---------------cCCCceeehhhhhcCCCCCCcccc-chhhhhhhhhhhHHHHHHHHHHHHHHhcC
Confidence 99976333332 1233 6888999999999888877 555554545432 45678999999999
Q ss_pred CcEEEEe
Q psy17227 162 GARIVSS 168 (268)
Q Consensus 162 GG~~i~~ 168 (268)
||...++
T Consensus 136 gg~~lvy 142 (293)
T KOG1331|consen 136 GGNALVY 142 (293)
T ss_pred CCceEEE
Confidence 9997665
No 174
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.72 E-value=5e-08 Score=80.91 Aligned_cols=123 Identities=19% Similarity=0.206 Sum_probs=79.5
Q ss_pred cCcHHHHHHHHHHcCC--CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccE
Q psy17227 38 ETSFDLISRMIDQINA--TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEF 115 (268)
Q Consensus 38 ~~~~~~~~~ll~~l~~--~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i 115 (268)
++....-+.+++.++. -+|.+|||+-||+|.+++.++. .|+.+|+.||.++.+..+ .+++++. .+.. .++
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALS-RGA~~v~fVE~~~~a~~~--i~~N~~~----l~~~-~~~ 94 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALS-RGAKSVVFVEKNRKAIKI--IKKNLEK----LGLE-DKI 94 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHH-TT-SEEEEEES-HHHHHH--HHHHHHH----HT-G-GGE
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHh-cCCCeEEEEECCHHHHHH--HHHHHHH----hCCC-cce
Confidence 3444444556666654 4789999999999999998654 688889999999863333 4455443 3332 369
Q ss_pred EEEEcCCCC-Cc-ccccccceEEEEEeccccCcCH-HHHHHHHH--hcCCCCcEEEEe
Q psy17227 116 RLVKGDFLT-EE-HREKITQASIVFVNNFAFGPTV-DHALKERF--QDLKDGARIVSS 168 (268)
Q Consensus 116 ~~~~gD~~~-l~-~~~~~~d~dvv~~~~~~~~~~~-~~~l~e~~--r~LkpGG~~i~~ 168 (268)
+++++|+.. ++ .......+|+||+...+..... ...+..+. ..|+++|.+++-
T Consensus 95 ~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 95 RVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp EEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred eeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 999999754 32 1112346899999877665553 66777776 689999999984
No 175
>PRK04148 hypothetical protein; Provisional
Probab=98.71 E-value=1.4e-07 Score=73.85 Aligned_cols=101 Identities=10% Similarity=0.142 Sum_probs=68.6
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCH-HHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQ-VVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~-~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
.+.+.+...++.+|||||||+|. ++..+++ .|+. |+|+|+++.++.. +++ ..++++++|+++
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~-~G~~-ViaIDi~~~aV~~------a~~---------~~~~~v~dDlf~ 69 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKE-SGFD-VIVIDINEKAVEK------AKK---------LGLNAFVDDLFN 69 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHH-CCCE-EEEEECCHHHHHH------HHH---------hCCeEEECcCCC
Confidence 35555656677899999999996 8877764 5776 9999999963222 221 247899999998
Q ss_pred CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.++. -..++|+|.+- --.+++...+.++.+.+. .-+++.
T Consensus 70 p~~~-~y~~a~liysi--rpp~el~~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 70 PNLE-IYKNAKLIYSI--RPPRDLQPFILELAKKIN--VPLIIK 108 (134)
T ss_pred CCHH-HHhcCCEEEEe--CCCHHHHHHHHHHHHHcC--CCEEEE
Confidence 6642 22356676652 345677777777776544 555554
No 176
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.71 E-value=1.6e-07 Score=78.49 Aligned_cols=125 Identities=15% Similarity=0.110 Sum_probs=77.7
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
.+..+++..=...+.+||+||||||..+.++|+.++.-.-.--|.++. .+..++.++.+.+..+- ..-+.-|+
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~------~~~sI~a~~~~~~~~Nv-~~P~~lDv 85 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDN------LRPSIRAWIAEAGLPNV-RPPLALDV 85 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChH------HHhhHHHHHHhcCCccc-CCCeEeec
Confidence 344555554222333599999999999999999998766677777765 22233344444443211 12334466
Q ss_pred CCCc--ccc----cccceEEEEEeccccCc---CHHHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227 123 LTEE--HRE----KITQASIVFVNNFAFGP---TVDHALKERFQDLKDGARIVSSKSFCPL 174 (268)
Q Consensus 123 ~~l~--~~~----~~~d~dvv~~~~~~~~~---~~~~~l~e~~r~LkpGG~~i~~~~~~~~ 174 (268)
.+.+ ... ....+|+|++-+++|.. .....|+...+.|+|||.++++-||..+
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~ 146 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD 146 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC
Confidence 5532 110 11245677776665543 3555688888999999999999777543
No 177
>KOG2904|consensus
Probab=98.67 E-value=2.9e-07 Score=79.34 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=63.6
Q ss_pred CcHHHHHHHHHHcC---CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccE
Q psy17227 39 TSFDLISRMIDQIN---ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEF 115 (268)
Q Consensus 39 ~~~~~~~~ll~~l~---~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i 115 (268)
.++..+..+++.++ ...+..+||+|||+|.++..++...+...|++||.|+.++.+|. +++.+ .++ .+.+
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~--eN~qr----~~l-~g~i 201 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK--ENAQR----LKL-SGRI 201 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH--HHHHH----Hhh-cCce
Confidence 34455555555543 44566899999999999999988877667999999998666654 55543 233 3577
Q ss_pred EEEEcCCCC---CcccccccceEEEEEecc
Q psy17227 116 RLVKGDFLT---EEHREKITQASIVFVNNF 142 (268)
Q Consensus 116 ~~~~gD~~~---l~~~~~~~d~dvv~~~~~ 142 (268)
.+++-+++. .|.+......|++++|..
T Consensus 202 ~v~~~~me~d~~~~~~l~~~~~dllvsNPP 231 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLLEGKIDLLVSNPP 231 (328)
T ss_pred EEEecccccccccccccccCceeEEecCCC
Confidence 777554442 222222234677777754
No 178
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.64 E-value=6.5e-08 Score=81.55 Aligned_cols=113 Identities=13% Similarity=0.212 Sum_probs=81.4
Q ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-
Q psy17227 47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE- 125 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l- 125 (268)
-++....+.|.+|||...|-|..++.+++ .|+..|+.+|.+|..+.+|..+...+ ++...+++++.||+.+.
T Consensus 126 Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~-rGA~~VitvEkdp~VLeLa~lNPwSr------~l~~~~i~iilGD~~e~V 198 (287)
T COG2521 126 KVELVKVKRGERVLDTCTGLGYTAIEALE-RGAIHVITVEKDPNVLELAKLNPWSR------ELFEIAIKIILGDAYEVV 198 (287)
T ss_pred hhheeccccCCEeeeeccCccHHHHHHHH-cCCcEEEEEeeCCCeEEeeccCCCCc------cccccccEEecccHHHHH
Confidence 34555677899999999999999998665 58866999999999888877544322 12234799999999874
Q ss_pred -cccccccceEEEEEecc--ccCcC--HHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 -EHREKITQASIVFVNNF--AFGPT--VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 -~~~~~~~d~dvv~~~~~--~~~~~--~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.|+|.+| |+|+-... .+..+ -...++|++|+|||||+++-+
T Consensus 199 ~~~~D~sf--DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 199 KDFDDESF--DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred hcCCcccc--ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence 3556544 55664432 12222 245679999999999999975
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.62 E-value=1.6e-07 Score=89.62 Aligned_cols=104 Identities=17% Similarity=0.105 Sum_probs=71.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cccccc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKIT 132 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~~ 132 (268)
.+..+||||||.|.++..+|...+...++|||++.. .++++...+. ..+ ..|+.++++|+..+. ++++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~--~~~~~~~~~~----~~~--l~N~~~~~~~~~~~~~~~~~~-- 416 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLN--GVANVLKLAG----EQN--ITNFLLFPNNLDLILNDLPNN-- 416 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHH--HHHHHHHHHH----HcC--CCeEEEEcCCHHHHHHhcCcc--
Confidence 466899999999999999999988777999999975 4444333322 233 358999999876443 3333
Q ss_pred ceEEEEEeccccCcCH---------HHHHHHHHhcCCCCcEEEEe
Q psy17227 133 QASIVFVNNFAFGPTV---------DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 133 d~dvv~~~~~~~~~~~---------~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+|.|+++-.--||+. ...+..+.++|||||.+.+.
T Consensus 417 sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 417 SLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred cccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 3456666532222221 23467788999999998764
No 180
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=2.3e-07 Score=80.38 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227 41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG 120 (268)
Q Consensus 41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g 120 (268)
...+.++++.+++.++++||+||+|.|.++..+++. +.. |++||+++.++.. .++... ..++++++.+
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~-v~aiEiD~~l~~~--L~~~~~--------~~~n~~vi~~ 83 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AAR-VTAIEIDRRLAEV--LKERFA--------PYDNLTVING 83 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCe-EEEEEeCHHHHHH--HHHhcc--------cccceEEEeC
Confidence 456788999999999999999999999999999886 343 9999999962222 222211 2469999999
Q ss_pred CCCCCcccccccceEEEEEecccc
Q psy17227 121 DFLTEEHREKITQASIVFVNNFAF 144 (268)
Q Consensus 121 D~~~l~~~~~~~d~dvv~~~~~~~ 144 (268)
|+.+.+++... ..+.|++|..++
T Consensus 84 DaLk~d~~~l~-~~~~vVaNlPY~ 106 (259)
T COG0030 84 DALKFDFPSLA-QPYKVVANLPYN 106 (259)
T ss_pred chhcCcchhhc-CCCEEEEcCCCc
Confidence 99998876432 234666665543
No 181
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.61 E-value=1.9e-07 Score=78.30 Aligned_cols=105 Identities=20% Similarity=0.276 Sum_probs=65.8
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
++.+. +++|.+|||+.||.|.+++.+|+..+...|+++|++|.+... ++++++ ..+. ..++..+++|+.++
T Consensus 94 Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~--L~~Ni~----lNkv-~~~i~~~~~D~~~~ 164 (200)
T PF02475_consen 94 RIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEY--LKENIR----LNKV-ENRIEVINGDAREF 164 (200)
T ss_dssp HHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHH--HHHHHH----HTT--TTTEEEEES-GGG-
T ss_pred HHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHH--HHHHHH----HcCC-CCeEEEEcCCHHHh
Confidence 45444 688999999999999999999986666679999999974444 334443 3344 35799999999887
Q ss_pred cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEE
Q psy17227 126 EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARI 165 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~ 165 (268)
.. . ..+|-|+++.. +.-...+....+.+|+||.+
T Consensus 165 ~~-~--~~~drvim~lp---~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 165 LP-E--GKFDRVIMNLP---ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp ---T--T-EEEEEE--T---SSGGGGHHHHHHHEEEEEEE
T ss_pred cC-c--cccCEEEECCh---HHHHHHHHHHHHHhcCCcEE
Confidence 64 2 24577777644 23345566677888888875
No 182
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.59 E-value=4.1e-07 Score=78.82 Aligned_cols=108 Identities=15% Similarity=0.062 Sum_probs=76.3
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Ccc-c
Q psy17227 52 NATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEH-R 128 (268)
Q Consensus 52 ~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~-~ 128 (268)
...+..+||+||+++|.-++.+|...+ ..+++.+|.++....+| +++++ ..|.. .+|+++.||+.+ ++- .
T Consensus 76 ~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~A--r~~~~----~ag~~-~~I~~~~G~a~e~L~~l~ 148 (247)
T PLN02589 76 KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELG--LPVIQ----KAGVA-HKIDFREGPALPVLDQMI 148 (247)
T ss_pred HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHH--HHHHH----HCCCC-CceEEEeccHHHHHHHHH
Confidence 444567899999999999999987654 34699999998744443 34443 35553 689999999876 331 1
Q ss_pred c-c--ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 129 E-K--ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 129 ~-~--~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
. . ...+|+||+.+. -......+..+.+.|+|||.|++-
T Consensus 149 ~~~~~~~~fD~iFiDad--K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD--KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred hccccCCcccEEEecCC--HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 1 0 135788998744 233455677778999999999884
No 183
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.57 E-value=2e-07 Score=85.51 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cccccc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKIT 132 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~~ 132 (268)
.|++|||+=|=||++++++|. .|+.+||+||+|..++..|+ ++++ .+|....+++|+++|+.++- ....-.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~--~N~~----LNg~~~~~~~~i~~Dvf~~l~~~~~~g~ 289 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAAL-GGASEVTSVDLSKRALEWAR--ENAE----LNGLDGDRHRFIVGDVFKWLRKAERRGE 289 (393)
T ss_pred cCCeEEEecccCcHHHHHHHh-cCCCceEEEeccHHHHHHHH--HHHH----hcCCCccceeeehhhHHHHHHHHHhcCC
Confidence 399999999999999998665 68877999999998555544 3333 45655567999999998742 111123
Q ss_pred ceEEEEEeccccCcC----------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 133 QASIVFVNNFAFGPT----------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 133 d~dvv~~~~~~~~~~----------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+|+|++...-|... ....+..+.+.|+|||.++++
T Consensus 290 ~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~ 335 (393)
T COG1092 290 KFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTS 335 (393)
T ss_pred cccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 578999876544322 222345566899999999976
No 184
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.57 E-value=2e-07 Score=82.70 Aligned_cols=88 Identities=20% Similarity=0.332 Sum_probs=65.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD 121 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD 121 (268)
.+.++++.+.+.++.++||.+||.|+.+..+++..+ ..+|+|+|.++.++..++ +.+. . ..+++++++|
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak--~~L~----~----~~ri~~i~~~ 76 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAK--DRLK----P----FGRFTLVHGN 76 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH--Hhhc----c----CCcEEEEeCC
Confidence 456788889899999999999999999999998875 446999999998555543 2221 1 2489999999
Q ss_pred CCCCcc--cccccceEEEEEe
Q psy17227 122 FLTEEH--REKITQASIVFVN 140 (268)
Q Consensus 122 ~~~l~~--~~~~~d~dvv~~~ 140 (268)
+.++.. +++...+|.|+++
T Consensus 77 f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 77 FSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred HHHHHHHHHcCCCccCEEEEC
Confidence 998752 2221246677764
No 185
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.57 E-value=4.7e-07 Score=75.06 Aligned_cols=97 Identities=23% Similarity=0.206 Sum_probs=70.7
Q ss_pred EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEE
Q psy17227 58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIV 137 (268)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv 137 (268)
+++|||+|.|.+++.+|-..+..+++-+|.+.. +.+=. +..+...|+ .|++++++.+++ + .....+|+|
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~K--K~~FL----~~~~~~L~L--~nv~v~~~R~E~-~--~~~~~fd~v 119 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGK--KVAFL----KEVVRELGL--SNVEVINGRAEE-P--EYRESFDVV 119 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHH--HHHHH----HHHHHHHT---SSEEEEES-HHH-T--TTTT-EEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCch--HHHHH----HHHHHHhCC--CCEEEEEeeecc-c--ccCCCccEE
Confidence 899999999999999999988888999999974 22212 222334555 489999999988 2 122467889
Q ss_pred EEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 138 FVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 138 ~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++-++ ..+...+.-+...||+||++++.
T Consensus 120 ~aRAv---~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 120 TARAV---APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp EEESS---SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred Eeehh---cCHHHHHHHHHHhcCCCCEEEEE
Confidence 98777 45566667777899999999986
No 186
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.56 E-value=6.7e-08 Score=79.76 Aligned_cols=107 Identities=15% Similarity=0.135 Sum_probs=65.7
Q ss_pred HHHHHHHHcC-CCCC--CEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227 43 LISRMIDQIN-ATPD--DVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV 118 (268)
Q Consensus 43 ~~~~ll~~l~-~~~~--~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~ 118 (268)
.+.++.+..+ +.++ .+||||||++|+.+..++... ...+|+|+|+.+. ....++.++
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-------------------~~~~~~~~i 68 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-------------------DPLQNVSFI 68 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-------------------GS-TTEEBT
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-------------------ccccceeee
Confidence 3456777777 5554 899999999999998777654 2446999999984 012467788
Q ss_pred EcCCCCCc----cccc----ccceEEEEEecccc-----CcCH-------HHHHHHHHhcCCCCcEEEEe
Q psy17227 119 KGDFLTEE----HREK----ITQASIVFVNNFAF-----GPTV-------DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 119 ~gD~~~l~----~~~~----~~d~dvv~~~~~~~-----~~~~-------~~~l~e~~r~LkpGG~~i~~ 168 (268)
++|+.+.. +.+. ...+|+|++..... ..+. ...+.-+.+.|||||.+++-
T Consensus 69 ~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 69 QGDITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp TGGGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred ecccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 88886532 1111 13578898876211 1111 12233334679999998874
No 187
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.54 E-value=1.4e-06 Score=75.99 Aligned_cols=114 Identities=14% Similarity=0.197 Sum_probs=78.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCC--cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-cccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGC--KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-HREK 130 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~--~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-~~~~ 130 (268)
...-+||||.||.|+..+.+....+. ..|.-.|.|+. .++..++. +++.|+. .-++|.++|+.+.. +..-
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~--Nv~~g~~l----i~~~gL~-~i~~f~~~dAfd~~~l~~l 206 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPI--NVEKGRAL----IAERGLE-DIARFEQGDAFDRDSLAAL 206 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHH--HHHHHHHH----HHHcCCc-cceEEEecCCCCHhHhhcc
Confidence 35568999999999999998887775 57899999985 33333333 3345653 34599999999843 2211
Q ss_pred ccceEEEEEecc--ccCcC--HHHHHHHHHhcCCCCcEEEEe-CCCCCC
Q psy17227 131 ITQASIVFVNNF--AFGPT--VDHALKERFQDLKDGARIVSS-KSFCPL 174 (268)
Q Consensus 131 ~~d~dvv~~~~~--~~~~~--~~~~l~e~~r~LkpGG~~i~~-~~~~~~ 174 (268)
.+..+++++..+ +|.++ ....+.-+.+.+.|||.+|.| -||.|+
T Consensus 207 ~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 207 DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 223355555544 45443 445689999999999999977 467665
No 188
>KOG3420|consensus
Probab=98.54 E-value=1e-07 Score=74.74 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=59.2
Q ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
+=+..+.-.|++++|||||+|-+.+.. ..++...|+|+||+|++..+.. .++.+ . .-++.+.|+|+.++.
T Consensus 40 Ih~TygdiEgkkl~DLgcgcGmLs~a~-sm~~~e~vlGfDIdpeALEIf~--rNaeE----f---EvqidlLqcdildle 109 (185)
T KOG3420|consen 40 IHNTYGDIEGKKLKDLGCGCGMLSIAF-SMPKNESVLGFDIDPEALEIFT--RNAEE----F---EVQIDLLQCDILDLE 109 (185)
T ss_pred HHhhhccccCcchhhhcCchhhhHHHh-hcCCCceEEeeecCHHHHHHHh--hchHH----h---hhhhheeeeeccchh
Confidence 334556668899999999999999654 3467777999999998555543 33332 2 136799999999987
Q ss_pred ccccccceEEEEEecc
Q psy17227 127 HREKITQASIVFVNNF 142 (268)
Q Consensus 127 ~~~~~~d~dvv~~~~~ 142 (268)
+.... +|..++|..
T Consensus 110 ~~~g~--fDtaviNpp 123 (185)
T KOG3420|consen 110 LKGGI--FDTAVINPP 123 (185)
T ss_pred ccCCe--EeeEEecCC
Confidence 65543 455666644
No 189
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.51 E-value=1.5e-06 Score=81.99 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=77.5
Q ss_pred HHHc--CCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 48 IDQI--NATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 48 l~~l--~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
+..+ +.++|++|||++||.|+=+.++|...+. ..+++.|+++. ++..+++++++ .|. .++.+.+.|..+
T Consensus 104 ~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~--R~~~L~~nl~r----~G~--~nv~v~~~D~~~ 175 (470)
T PRK11933 104 VAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSAS--RVKVLHANISR----CGV--SNVALTHFDGRV 175 (470)
T ss_pred HHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHH----cCC--CeEEEEeCchhh
Confidence 3445 7789999999999999999999987643 36999999986 45445566554 453 479999999887
Q ss_pred Ccc-cccccceEEEEEecccc-------CcCH----------------HHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EEH-REKITQASIVFVNNFAF-------GPTV----------------DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~~-~~~~~d~dvv~~~~~~~-------~~~~----------------~~~l~e~~r~LkpGG~~i~~ 168 (268)
++- ... .+|.|++.+.|- .|+. .+.|...++.|||||++|-+
T Consensus 176 ~~~~~~~--~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 176 FGAALPE--TFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred hhhhchh--hcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 541 112 356777655432 1211 23456677899999999743
No 190
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.49 E-value=1.1e-06 Score=80.37 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=49.9
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
..+++.++..+ .+|||+|||+|.+++.+++.. .+|+|||+++.++..++ ++++ ..+. .+++|+++|+.+
T Consensus 188 ~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~--~n~~----~~~~--~~v~~~~~d~~~ 256 (353)
T TIGR02143 188 EWACEVTQGSK-GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQ--YNIA----ANNI--DNVQIIRMSAEE 256 (353)
T ss_pred HHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHH--HHHH----HcCC--CcEEEEEcCHHH
Confidence 34445554333 469999999999999888764 35999999998655544 4443 2332 379999999976
Q ss_pred C
Q psy17227 125 E 125 (268)
Q Consensus 125 l 125 (268)
+
T Consensus 257 ~ 257 (353)
T TIGR02143 257 F 257 (353)
T ss_pred H
Confidence 3
No 191
>KOG2940|consensus
Probab=98.48 E-value=1.7e-07 Score=78.92 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=79.1
Q ss_pred HHHHHc-CC-CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 46 RMIDQI-NA-TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 46 ~ll~~l-~~-~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
+++.++ ++ +...+++|||||.|.+.+++..+ +..+++-+|.|-.|++-++ . ++. ..-......+|-+
T Consensus 61 rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~------~-~qd---p~i~~~~~v~DEE 129 (325)
T KOG2940|consen 61 RLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCR------D-AQD---PSIETSYFVGDEE 129 (325)
T ss_pred HHHHHHHHHhhhCcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhh------c-cCC---CceEEEEEecchh
Confidence 455444 33 34567999999999999988665 5777999999987444332 1 100 1125678889999
Q ss_pred CCcccccccceEEEEEecccc-CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 124 TEEHREKITQASIVFVNNFAF-GPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 124 ~l~~~~~~~d~dvv~~~~~~~-~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.++|.++++| ++++...+| ..++...+..+...|||.|.|+.+
T Consensus 130 ~Ldf~ens~D--LiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 130 FLDFKENSVD--LIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred cccccccchh--hhhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 9999887654 555544444 467889999999999999999975
No 192
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.47 E-value=1.7e-06 Score=77.63 Aligned_cols=86 Identities=14% Similarity=0.081 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHh-ccccccEEEEE-cCCCCCccc--cc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWY-GKRHGEFRLVK-GDFLTEEHR--EK 130 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~i~~~~-gD~~~l~~~--~~ 130 (268)
++.++||||||+|.+...++.+....+++|+|+++.++..|+ ++++. . +. ..++++++ .|..++... ..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~--~Nv~~----Np~l-~~~I~~~~~~~~~~i~~~i~~~ 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQ--AIISA----NPGL-NGAIRLRLQKDSKAIFKGIIHK 186 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH--HHHHh----ccCC-cCcEEEEEccchhhhhhccccc
Confidence 567899999999988877776654445999999998666554 44432 2 22 24687764 343332210 11
Q ss_pred ccceEEEEEeccccCcC
Q psy17227 131 ITQASIVFVNNFAFGPT 147 (268)
Q Consensus 131 ~~d~dvv~~~~~~~~~~ 147 (268)
...+|+|++|..+|...
T Consensus 187 ~~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 187 NERFDATLCNPPFHASA 203 (321)
T ss_pred CCceEEEEeCCCCcCcc
Confidence 23578999998877543
No 193
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.46 E-value=1.6e-06 Score=71.19 Aligned_cols=110 Identities=11% Similarity=0.152 Sum_probs=60.9
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhc-cccccEEEEEcCCCCCcccc-
Q psy17227 52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYG-KRHGEFRLVKGDFLTEEHRE- 129 (268)
Q Consensus 52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~i~~~~gD~~~l~~~~- 129 (268)
...++.+||+||||+|-.++.+|+..+...|+..|.++ .+.. ++.+++. .+ ....++++...|-.+....+
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~--l~~Ni~~----N~~~~~~~v~v~~L~Wg~~~~~~~ 114 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLEL--LRRNIEL----NGSLLDGRVSVRPLDWGDELDSDL 114 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHH--HHHHHHT----T--------EEEE--TTS-HHHHH
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHH--HHHHHHh----ccccccccccCcEEEecCcccccc
Confidence 35678899999999999999888865666799999998 3333 3344332 11 11347888887764411011
Q ss_pred -cccceEEEEEeccccCcCHHHH-HHHHHhcCCCCcEEEEe
Q psy17227 130 -KITQASIVFVNNFAFGPTVDHA-LKERFQDLKDGARIVSS 168 (268)
Q Consensus 130 -~~~d~dvv~~~~~~~~~~~~~~-l~e~~r~LkpGG~~i~~ 168 (268)
....+|+|+...+++.++.... +.-+.+.|+|+|.+++.
T Consensus 115 ~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 115 LEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp HS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred cccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 1124678887777666665555 45556789998887665
No 194
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.45 E-value=2e-06 Score=77.23 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=84.7
Q ss_pred CchHHHHHHHHHHHHhhcCCccccccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC---
Q psy17227 2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG--- 78 (268)
Q Consensus 2 ~~~~~~~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~--- 78 (268)
||++|-.+-=++.|++|+ .+..|.+...+ -++.......++..+ .++.+++|+|||.|.=+..+.....
T Consensus 31 p~k~~YD~~Gs~LFe~It----~lpEYYptr~E--~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~ 102 (319)
T TIGR03439 31 PTLLLYDDEGLKLFEEIT----YSPEYYLTNDE--IEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQK 102 (319)
T ss_pred ChHhhhcchHHHHHHHHH----cCCccCChHHH--HHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcC
Confidence 555555555556666666 23344443321 112222333455554 5777899999999998777665442
Q ss_pred -CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEE--EEcCCCCC----ccc--ccccceEEEEEeccc--cC-c
Q psy17227 79 -CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRL--VKGDFLTE----EHR--EKITQASIVFVNNFA--FG-P 146 (268)
Q Consensus 79 -~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~--~~gD~~~l----~~~--~~~~d~dvv~~~~~~--~~-~ 146 (268)
....++||+|..+.. .+...+.. ...+.+++ ++||+.+. +-+ ...... ++|..+.+ +. +
T Consensus 103 ~~~~Y~plDIS~~~L~--~a~~~L~~------~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~-~~flGSsiGNf~~~ 173 (319)
T TIGR03439 103 KSVDYYALDVSRSELQ--RTLAELPL------GNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTT-ILWLGSSIGNFSRP 173 (319)
T ss_pred CCceEEEEECCHHHHH--HHHHhhhh------ccCCCeEEEEEEecHHHHHhhcccccccCCccE-EEEeCccccCCCHH
Confidence 224799999986333 22222220 12344544 99999763 211 111222 44554443 22 3
Q ss_pred CHHHHHHHHHh-cCCCCcEEEEe
Q psy17227 147 TVDHALKERFQ-DLKDGARIVSS 168 (268)
Q Consensus 147 ~~~~~l~e~~r-~LkpGG~~i~~ 168 (268)
+....|+++.+ .|+||+.+++.
T Consensus 174 ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 174 EAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEe
Confidence 34555788888 99999998875
No 195
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.43 E-value=1.9e-06 Score=72.83 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceE
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQAS 135 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~d 135 (268)
+.+++|||+|.|-+++.+|-.++..+++=||-...-+.. ++...++.++ .|++++++.++++.-.... +|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~F------L~~~~~eL~L--~nv~i~~~RaE~~~~~~~~--~D 137 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAF------LREVKKELGL--ENVEIVHGRAEEFGQEKKQ--YD 137 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHH------HHHHHHHhCC--CCeEEehhhHhhccccccc--Cc
Confidence 589999999999999999977777679999998752222 2222234454 5899999999987632221 78
Q ss_pred EEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 136 IVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 136 vv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|++-++ .++...+.-+...+|+||.++..
T Consensus 138 ~vtsRAv---a~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 138 VVTSRAV---ASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred EEEeehc---cchHHHHHHHHHhcccCCcchhh
Confidence 8988766 34455555556789999998754
No 196
>PLN02823 spermine synthase
Probab=98.43 E-value=1.1e-06 Score=79.58 Aligned_cols=109 Identities=11% Similarity=0.074 Sum_probs=73.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA 134 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~ 134 (268)
...+||.||+|.|..++.+++..+..+++.||+++.++.+++ +.+... ..+...++++++.+|..+.- ......+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar--~~~~~~--~~~~~dprv~v~~~Da~~~L-~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCR--KHLTVN--REAFCDKRLELIINDARAEL-EKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHH--Hhcccc--cccccCCceEEEEChhHHHH-hhCCCCc
Confidence 446899999999999998887656667999999998666655 332210 00123468999999998732 1122357
Q ss_pred EEEEEecccc---CcC----HHHHHH-HHHhcCCCCcEEEEe
Q psy17227 135 SIVFVNNFAF---GPT----VDHALK-ERFQDLKDGARIVSS 168 (268)
Q Consensus 135 dvv~~~~~~~---~~~----~~~~l~-e~~r~LkpGG~~i~~ 168 (268)
|+|++...-. .+- -...++ .+.+.|+|||.+++.
T Consensus 178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 8899874311 110 123455 678899999999864
No 197
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.41 E-value=1e-05 Score=66.76 Aligned_cols=125 Identities=22% Similarity=0.202 Sum_probs=85.0
Q ss_pred cccCcHHHHHHHHHHcCC--CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccc
Q psy17227 36 YGETSFDLISRMIDQINA--TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG 113 (268)
Q Consensus 36 ~g~~~~~~~~~ll~~l~~--~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 113 (268)
.-++....=..+.+.+.. -.|.+|||+=+|+|.+++.++. .|+.+++.||.+..+..+ .+++++ ..+. ..
T Consensus 22 ~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlS-RGA~~~~~vE~~~~a~~~--l~~N~~----~l~~-~~ 93 (187)
T COG0742 22 TRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALS-RGAARVVFVEKDRKAVKI--LKENLK----ALGL-EG 93 (187)
T ss_pred cCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHh-CCCceEEEEecCHHHHHH--HHHHHH----HhCC-cc
Confidence 334555555568888765 5889999999999999999665 588889999999864333 334443 3333 35
Q ss_pred cEEEEEcCCCCC-cccccccceEEEEEeccccCcCH--HHHHHH--HHhcCCCCcEEEEe
Q psy17227 114 EFRLVKGDFLTE-EHREKITQASIVFVNNFAFGPTV--DHALKE--RFQDLKDGARIVSS 168 (268)
Q Consensus 114 ~i~~~~gD~~~l-~~~~~~~d~dvv~~~~~~~~~~~--~~~l~e--~~r~LkpGG~~i~~ 168 (268)
+++++..|+... +.......+|+||+...++..-. ...+.. -...|+|||.+++-
T Consensus 94 ~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 94 EARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred ceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 899999998843 11112224789999877663333 333333 34689999999984
No 198
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.40 E-value=6.3e-06 Score=81.74 Aligned_cols=123 Identities=14% Similarity=0.079 Sum_probs=82.5
Q ss_pred CcHHHHHHHHHHcCC-CCCCEEEEEcCCCCHHHHHHHHH------------hC---------------------------
Q psy17227 39 TSFDLISRMIDQINA-TPDDVFVDLGSGVGQVVLQVAAA------------TG--------------------------- 78 (268)
Q Consensus 39 ~~~~~~~~ll~~l~~-~~~~~vLDiGCG~G~~~~~la~~------------~~--------------------------- 78 (268)
+-+.....++...++ +++..++|.+||+|.+++.+|.. ++
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 444556678888888 67899999999999999998763 11
Q ss_pred ---CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEecccc---C--cCHHH
Q psy17227 79 ---CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAF---G--PTVDH 150 (268)
Q Consensus 79 ---~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~---~--~~~~~ 150 (268)
..+++|+|+++.++..|+ +++. ..|.. ..++|.++|+.+++.+.....+|+|++|..+. . .+...
T Consensus 253 ~~~~~~i~G~Did~~av~~A~--~N~~----~~g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~ 325 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAAR--KNAR----RAGVA-ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIA 325 (702)
T ss_pred cccCceEEEEECCHHHHHHHH--HHHH----HcCCC-cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHH
Confidence 114899999998776665 3333 24543 46999999999987543222367888886542 1 12222
Q ss_pred H---HHHHHhcCCCCcEEEEe
Q psy17227 151 A---LKERFQDLKDGARIVSS 168 (268)
Q Consensus 151 ~---l~e~~r~LkpGG~~i~~ 168 (268)
. +.+.++...||+++++.
T Consensus 326 lY~~lg~~lk~~~~g~~~~ll 346 (702)
T PRK11783 326 LYSQLGRRLKQQFGGWNAALF 346 (702)
T ss_pred HHHHHHHHHHHhCCCCeEEEE
Confidence 3 34445555689887654
No 199
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.37 E-value=5.2e-06 Score=63.95 Aligned_cols=101 Identities=24% Similarity=0.265 Sum_probs=64.3
Q ss_pred EEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC--CcccccccceE
Q psy17227 59 FVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT--EEHREKITQAS 135 (268)
Q Consensus 59 vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~--l~~~~~~~d~d 135 (268)
++|+|||+|... .++...+. ..++|+|+++.+...+. .... ......+.+..+|... +++... ..+|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~d 121 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALAR--ARAE------GAGLGLVDFVVADALGGVLPFEDS-ASFD 121 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHH--hhhh------hcCCCceEEEEeccccCCCCCCCC-Ccee
Confidence 999999999976 33443332 24899999986444321 1110 0001117899999886 676542 1344
Q ss_pred EEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeC
Q psy17227 136 IVFVNNFAFGPTVDHALKERFQDLKDGARIVSSK 169 (268)
Q Consensus 136 vv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~ 169 (268)
++......+.......+.++.++|+|+|.+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 155 (257)
T COG0500 122 LVISLLVLHLLPPAKALRELLRVLKPGGRLVLSD 155 (257)
T ss_pred EEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 5544444443347888999999999999998863
No 200
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.36 E-value=3.1e-06 Score=77.58 Aligned_cols=107 Identities=16% Similarity=0.105 Sum_probs=65.0
Q ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-
Q psy17227 47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE- 125 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l- 125 (268)
+.+.+... +.+|||++||+|.+++.+++.. .+|+|||+|+.++..++ ++++ ..+. .+++|+++|+.+.
T Consensus 199 v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~--~N~~----~~~~--~~v~~~~~d~~~~l 267 (362)
T PRK05031 199 ALDATKGS-KGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQ--YNIA----ANGI--DNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHhhcC-CCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHH--HHHH----HhCC--CcEEEEECCHHHHH
Confidence 34444332 3579999999999999887753 46999999998655544 4443 2333 4899999999763
Q ss_pred c-ccc------------cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 E-HRE------------KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~-~~~------------~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+ +.. ....+|+|+++..- ..-....+..+. +|++.++++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~G~~~~~l~~l~---~~~~ivyvS 319 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPR-AGLDDETLKLVQ---AYERILYIS 319 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCCC-CCCcHHHHHHHH---ccCCEEEEE
Confidence 2 110 01135788886442 111223333333 367777764
No 201
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.34 E-value=6.5e-07 Score=72.50 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=47.6
Q ss_pred CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc-eE
Q psy17227 57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ-AS 135 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d-~d 135 (268)
.+|+|+.||.|+-++.+|+. +.+|++||+++. +++.++.+++ -.|. ..+|+|++||+.++.-...... +|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~--~~~~a~hNa~----vYGv-~~~I~~i~gD~~~~~~~~~~~~~~D 71 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPE--RLECAKHNAE----VYGV-ADNIDFICGDFFELLKRLKSNKIFD 71 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HH--HHHHHHHHHH----HTT--GGGEEEEES-HHHHGGGB------S
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHH--HHHHHHHHHH----HcCC-CCcEEEEeCCHHHHHhhcccccccc
Confidence 36999999999999999986 344999999986 4444445554 3454 3589999999987531111111 57
Q ss_pred EEEEe
Q psy17227 136 IVFVN 140 (268)
Q Consensus 136 vv~~~ 140 (268)
+||++
T Consensus 72 ~vFlS 76 (163)
T PF09445_consen 72 VVFLS 76 (163)
T ss_dssp EEEE-
T ss_pred EEEEC
Confidence 78865
No 202
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.32 E-value=7.6e-06 Score=69.04 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=71.2
Q ss_pred HHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-
Q psy17227 49 DQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE- 126 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~- 126 (268)
+.+.+++|.+||-||..+|...-+++...+ ...|++||.|+.+ .......+++ -.||--+-+|+....
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~--~rdL~~la~~--------R~NIiPIl~DAr~P~~ 136 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRS--MRDLLNLAKK--------RPNIIPILEDARHPEK 136 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHH--HHHHHHHHHH--------STTEEEEES-TTSGGG
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchh--HHHHHHHhcc--------CCceeeeeccCCChHH
Confidence 446788999999999999999999999887 4579999999852 1112222222 358999999998754
Q ss_pred ccccccceEEEEEeccccCcCHHH-HHHHHHhcCCCCcEEEEe
Q psy17227 127 HREKITQASIVFVNNFAFGPTVDH-ALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 ~~~~~~d~dvv~~~~~~~~~~~~~-~l~e~~r~LkpGG~~i~~ 168 (268)
+..-...+|+|+.... .|+..+ +..++..-||+||.+++.
T Consensus 137 Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 137 YRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp GTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 2222246899998744 344444 456666799999999875
No 203
>KOG2915|consensus
Probab=98.31 E-value=8.3e-06 Score=70.41 Aligned_cols=115 Identities=20% Similarity=0.247 Sum_probs=87.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227 42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG 120 (268)
Q Consensus 42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g 120 (268)
..+..++.+|+++||.+||+-|.|+|.++..+|+..+ ..+++..|..+. +..++++.++ +.+. .++++++.-
T Consensus 92 ~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~--Ra~ka~eeFr----~hgi-~~~vt~~hr 164 (314)
T KOG2915|consen 92 PDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHET--RAEKALEEFR----EHGI-GDNVTVTHR 164 (314)
T ss_pred ccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHH--HHHHHHHHHH----HhCC-CcceEEEEe
Confidence 3466789999999999999999999999999998863 336899999763 4444555555 3454 369999999
Q ss_pred CCCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCc-EEEE
Q psy17227 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGA-RIVS 167 (268)
Q Consensus 121 D~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG-~~i~ 167 (268)
|+...-|...+..+|+||.. .|.+..++-..+..||.+| ++++
T Consensus 165 DVc~~GF~~ks~~aDaVFLD----lPaPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 165 DVCGSGFLIKSLKADAVFLD----LPAPWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred ecccCCccccccccceEEEc----CCChhhhhhhhHHHhhhcCceEEe
Confidence 99987766555567888864 4667778878888898866 5554
No 204
>KOG0820|consensus
Probab=98.31 E-value=4.1e-06 Score=72.32 Aligned_cols=87 Identities=24% Similarity=0.432 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc-ccccEEEEE
Q psy17227 41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGK-RHGEFRLVK 119 (268)
Q Consensus 41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~i~~~~ 119 (268)
+..+..+++..++++++.||+||-|||+++..+... +.. |+++|+++. +++...++.+ |. ..++.+++.
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kk-VvA~E~Dpr--mvael~krv~------gtp~~~kLqV~~ 113 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKK-VVAVEIDPR--MVAELEKRVQ------GTPKSGKLQVLH 113 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCe-EEEEecCcH--HHHHHHHHhc------CCCccceeeEEe
Confidence 445678999999999999999999999999987764 454 999999997 3333222221 22 135899999
Q ss_pred cCCCCCcccccccceEEEEEec
Q psy17227 120 GDFLTEEHREKITQASIVFVNN 141 (268)
Q Consensus 120 gD~~~l~~~~~~~d~dvv~~~~ 141 (268)
||+.+.+++ .| |++++|.
T Consensus 114 gD~lK~d~P--~f--d~cVsNl 131 (315)
T KOG0820|consen 114 GDFLKTDLP--RF--DGCVSNL 131 (315)
T ss_pred cccccCCCc--cc--ceeeccC
Confidence 999987643 23 4555553
No 205
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=9.9e-06 Score=67.79 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=72.0
Q ss_pred HHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 45 SRMIDQIN-ATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 45 ~~ll~~l~-~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
.++.++.+ ++++++|+||||-+|+-+..+++..+.. .|+|||+.|- . ..+++.++++|+
T Consensus 34 ~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-------~------------~~~~V~~iq~d~ 94 (205)
T COG0293 34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-------K------------PIPGVIFLQGDI 94 (205)
T ss_pred HHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-------c------------cCCCceEEeeec
Confidence 34555554 4678999999999999999888887653 5999999982 1 135799999999
Q ss_pred CCCccccc----c--cceEEEEEecc-----ccCcCHHH-------HHHHHHhcCCCCcEEEEe
Q psy17227 123 LTEEHREK----I--TQASIVFVNNF-----AFGPTVDH-------ALKERFQDLKDGARIVSS 168 (268)
Q Consensus 123 ~~l~~~~~----~--~d~dvv~~~~~-----~~~~~~~~-------~l~e~~r~LkpGG~~i~~ 168 (268)
++-+..+. . ..+|+|.+.+. .+..|... ++.-+..+|+|||.|++-
T Consensus 95 ~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K 158 (205)
T COG0293 95 TDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK 158 (205)
T ss_pred cCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence 98653221 1 12588887643 22223222 123334799999999984
No 206
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.30 E-value=1.8e-06 Score=76.31 Aligned_cols=116 Identities=16% Similarity=0.237 Sum_probs=73.3
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
.+..+... ..|.+|||+=|=||+++..++ ..|+.+|++||.|..++..++ +++. .+|....+++|+++|+.
T Consensus 114 nR~~v~~~--~~gkrvLnlFsYTGgfsv~Aa-~gGA~~v~~VD~S~~al~~a~--~N~~----lNg~~~~~~~~~~~Dvf 184 (286)
T PF10672_consen 114 NRKWVRKY--AKGKRVLNLFSYTGGFSVAAA-AGGAKEVVSVDSSKRALEWAK--ENAA----LNGLDLDRHRFIQGDVF 184 (286)
T ss_dssp HHHHHHHH--CTTCEEEEET-TTTHHHHHHH-HTTESEEEEEES-HHHHHHHH--HHHH----HTT-CCTCEEEEES-HH
T ss_pred hHHHHHHH--cCCCceEEecCCCCHHHHHHH-HCCCCEEEEEeCCHHHHHHHH--HHHH----HcCCCccceEEEecCHH
Confidence 33444443 468899999999999999755 478878999999987444433 4433 34554568999999997
Q ss_pred CC-cccccccceEEEEEeccccCc-------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 124 TE-EHREKITQASIVFVNNFAFGP-------TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 124 ~l-~~~~~~~d~dvv~~~~~~~~~-------~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+. .--.....+|+|++...-|.. +....+..+.+.|+|||.++++
T Consensus 185 ~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 185 KFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp HHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 63 211112368899987654322 2233455666899999998865
No 207
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.28 E-value=8.5e-06 Score=65.55 Aligned_cols=115 Identities=15% Similarity=0.106 Sum_probs=78.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227 41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK 119 (268)
Q Consensus 41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 119 (268)
.-..++++...+...|.-||++|-|||-++..+..+. ....++.||.|++ .... +.+ ..+.++++.
T Consensus 34 s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~d---F~~~---L~~-------~~p~~~ii~ 100 (194)
T COG3963 34 SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPD---FVCH---LNQ-------LYPGVNIIN 100 (194)
T ss_pred HHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHH---HHHH---HHH-------hCCCccccc
Confidence 3445678888899999999999999999999887642 2336899999996 3221 111 246788999
Q ss_pred cCCCCCc--cccc-ccceEEEEEeccc--cCcC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227 120 GDFLTEE--HREK-ITQASIVFVNNFA--FGPT-VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 120 gD~~~l~--~~~~-~~d~dvv~~~~~~--~~~~-~~~~l~e~~r~LkpGG~~i~~ 168 (268)
||+.++. ..+. ..-+|+|++...+ +... ....++.....|.+||.++..
T Consensus 101 gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred cchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 9999986 2211 1234666665432 3333 334467777889999999853
No 208
>KOG3178|consensus
Probab=98.28 E-value=5.9e-06 Score=73.90 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=73.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceE
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQAS 135 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~d 135 (268)
-...+|+|.|.|+.+..+...++. |-|++.+.. .+-++... .. +.|+.+-||+.+- ....|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp--~v~~~a~~---------~~-~gV~~v~gdmfq~-----~P~~d 238 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLP--FVLAAAPY---------LA-PGVEHVAGDMFQD-----TPKGD 238 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHH--HHHhhhhh---------hc-CCcceeccccccc-----CCCcC
Confidence 478999999999999999887666 788888863 22111111 11 3589999999862 33557
Q ss_pred EEEEecc-ccCcC--HHHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227 136 IVFVNNF-AFGPT--VDHALKERFQDLKDGARIVSSKSFCPL 174 (268)
Q Consensus 136 vv~~~~~-~~~~~--~~~~l~e~~r~LkpGG~~i~~~~~~~~ 174 (268)
+|++-=+ .||+| ..+.|++++..|+|||.+++.+...|.
T Consensus 239 aI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 239 AIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred eEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 8887644 45654 677899999999999999998887765
No 209
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.27 E-value=9.8e-07 Score=72.16 Aligned_cols=96 Identities=23% Similarity=0.312 Sum_probs=71.2
Q ss_pred CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEE
Q psy17227 57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASI 136 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dv 136 (268)
+++.|+|.|+|-++.-+|.. +.+|++|+.+|....+|+ +++. -.| ..+++++.||+.+..|. .+|+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~--eN~~----v~g--~~n~evv~gDA~~y~fe----~ADv 99 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAE--ENLH----VPG--DVNWEVVVGDARDYDFE----NADV 99 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhh--hcCC----CCC--CcceEEEeccccccccc----ccce
Confidence 78999999999999866554 566999999996444433 3321 112 35899999999998762 5789
Q ss_pred EEEecc---ccCcCHHHHHHHHHhcCCCCcEEE
Q psy17227 137 VFVNNF---AFGPTVDHALKERFQDLKDGARIV 166 (268)
Q Consensus 137 v~~~~~---~~~~~~~~~l~e~~r~LkpGG~~i 166 (268)
|+|+.. +.......++..+..-||-.+.++
T Consensus 100 vicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 100 VICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred eHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 988754 345566777888888888888876
No 210
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.25 E-value=6.9e-06 Score=75.39 Aligned_cols=101 Identities=9% Similarity=0.040 Sum_probs=74.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA 134 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~ 134 (268)
+-+|||+.||+|..++.++.+. |...|+++|+++.++...+ ++++. .+. .+++++++|+.++-... ...+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~--~N~~~----N~~--~~~~v~~~Da~~~l~~~-~~~f 115 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIK--NNVEY----NSV--ENIEVPNEDAANVLRYR-NRKF 115 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH--HHHHH----hCC--CcEEEEchhHHHHHHHh-CCCC
Confidence 3589999999999999999874 6778999999998555433 44432 222 36899999998753211 1246
Q ss_pred EEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 135 SIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 135 dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
|+|+++.+ ..+...+..+.+.+++||.+.++
T Consensus 116 DvIdlDPf---Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 116 HVIDIDPF---GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CEEEeCCC---CCcHHHHHHHHHhcccCCEEEEE
Confidence 78988763 23456788889999999999876
No 211
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=7e-06 Score=76.65 Aligned_cols=113 Identities=19% Similarity=0.177 Sum_probs=76.4
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
+...++.++..++++|||+=||.|.+++.+|+. ..+|+|+|+++.++..|+ ++++ .++. .|++|+.+|.+
T Consensus 282 ~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~--~NA~----~n~i--~N~~f~~~~ae 351 (432)
T COG2265 282 YETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQ--ENAA----ANGI--DNVEFIAGDAE 351 (432)
T ss_pred HHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHH--HHHH----HcCC--CcEEEEeCCHH
Confidence 345777788889999999999999999999854 445999999998555544 4444 2343 47999999999
Q ss_pred CCcccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 124 TEEHRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 124 ~l~~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+....- ....+|+|+++..= ......+.+....++|-..+.++
T Consensus 352 ~~~~~~~~~~~~d~VvvDPPR--~G~~~~~lk~l~~~~p~~IvYVS 395 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVDPPR--AGADREVLKQLAKLKPKRIVYVS 395 (432)
T ss_pred HHhhhccccCCCCEEEECCCC--CCCCHHHHHHHHhcCCCcEEEEe
Confidence 866322 22456788875320 11233344444556777777664
No 212
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.21 E-value=8e-06 Score=73.61 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=79.3
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
+++++. .+|.+|||+=||.|.+++.+|+. |..+|+++|++|.+..+. +++++ .++. .+.++.++||..+.
T Consensus 181 Rva~~v--~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L--~eNi~----LN~v-~~~v~~i~gD~rev 250 (341)
T COG2520 181 RVAELV--KEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYL--KENIR----LNKV-EGRVEPILGDAREV 250 (341)
T ss_pred HHHhhh--cCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHH--HHHHH----hcCc-cceeeEEeccHHHh
Confidence 465553 45999999999999999998875 555599999999855553 34443 2333 34599999999987
Q ss_pred cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+... ..+|-|+++.. .+..+.+....+.+|+||.+-.+
T Consensus 251 ~~~~--~~aDrIim~~p---~~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 251 APEL--GVADRIIMGLP---KSAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred hhcc--ccCCEEEeCCC---CcchhhHHHHHHHhhcCcEEEEE
Confidence 7543 34677887643 44456677778889999999887
No 213
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.21 E-value=1e-05 Score=70.91 Aligned_cols=104 Identities=17% Similarity=0.288 Sum_probs=69.5
Q ss_pred cHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE
Q psy17227 40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK 119 (268)
Q Consensus 40 ~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~ 119 (268)
....+.++++.+++.++..|||||.|+|.++..++... .++++||+++. +.. .+++. .. ..++++++.
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~---~~~---~L~~~---~~-~~~~~~vi~ 82 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPD---LAK---HLKER---FA-SNPNVEVIN 82 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHH---HHH---HHHHH---CT-TCSSEEEEE
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHh---HHH---HHHHH---hh-hcccceeee
Confidence 35667889999999999999999999999999998764 55999999985 222 22211 11 246999999
Q ss_pred cCCCCCcccccc-cceEEEEEeccccCcCHHHHHHHHHh
Q psy17227 120 GDFLTEEHREKI-TQASIVFVNNFAFGPTVDHALKERFQ 157 (268)
Q Consensus 120 gD~~~l~~~~~~-~d~dvv~~~~~~~~~~~~~~l~e~~r 157 (268)
+|+.+++..... .+...|+.|..+. --...+..+..
T Consensus 83 ~D~l~~~~~~~~~~~~~~vv~NlPy~--is~~il~~ll~ 119 (262)
T PF00398_consen 83 GDFLKWDLYDLLKNQPLLVVGNLPYN--ISSPILRKLLE 119 (262)
T ss_dssp S-TTTSCGGGHCSSSEEEEEEEETGT--GHHHHHHHHHH
T ss_pred cchhccccHHhhcCCceEEEEEeccc--chHHHHHHHhh
Confidence 999998865421 1233555553331 12334444444
No 214
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.17 E-value=8.6e-06 Score=72.09 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCCHH----HHHHHHHhC----CcEEEEEeCCCChhHHHHHH----H--------HHHHHHHHh-----c-
Q psy17227 56 DDVFVDLGSGVGQV----VLQVAAATG----CKICWGVEKADLPAKYAEMH----T--------VFKRWMQWY-----G- 109 (268)
Q Consensus 56 ~~~vLDiGCG~G~~----~~~la~~~~----~~~v~GiD~s~~~~~~a~~~----~--------~~~~~~~~~-----~- 109 (268)
.-+|...||+||.= ++.+....+ .-+|+|+|+|+.++..|+.- . ..+++-... +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 36899999999963 333333222 12599999999866655521 0 011111100 0
Q ss_pred --cc---cccEEEEEcCCCCCcccccccceEEEEEecc-c-cCc-CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 110 --KR---HGEFRLVKGDFLTEEHREKITQASIVFVNNF-A-FGP-TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 110 --~~---~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~-~-~~~-~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.. ...|+|.+.|+.+.+++. ...+|+|+|.++ + +.+ ...+++.++++.|+|||.+++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~-~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAV-PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCcc-CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 00 136899999998855431 135688998655 3 433 3667789999999999998874
No 215
>KOG4058|consensus
Probab=98.16 E-value=1.5e-05 Score=62.88 Aligned_cols=123 Identities=24% Similarity=0.483 Sum_probs=83.6
Q ss_pred ccCCCCCCCCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHH
Q psy17227 26 NVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWM 105 (268)
Q Consensus 26 ~~y~~~~~~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~ 105 (268)
+-.-||-+ .+.+.+..++..+.-.+..+.+|||+|.|++....|+ .|....+|+|++|-.+.+++... .+
T Consensus 48 R~cvPYVp-----AtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar-~g~~~a~GvELNpwLVaysrl~a-~R--- 117 (199)
T KOG4058|consen 48 RLCVPYVP-----ATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAAR-CGLRPAVGVELNPWLVAYSRLHA-WR--- 117 (199)
T ss_pred eecccccC-----ccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhh-hCCCcCCceeccHHHHHHHHHHH-HH---
Confidence 33455555 6667888899998777877899999999999987665 46555799999997666655221 11
Q ss_pred HHhccccccEEEEEcCCCCCcccccccceEEEEEeccccCcCHHHHHHHHHh-cCCCCcEEEEe
Q psy17227 106 QWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQ-DLKDGARIVSS 168 (268)
Q Consensus 106 ~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r-~LkpGG~~i~~ 168 (268)
.|. .+..+|..-|+++..+.+ ...-+||- .+.++..+....+ .|..|.+++..
T Consensus 118 --~g~-~k~trf~RkdlwK~dl~d--y~~vviFg-----aes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 118 --AGC-AKSTRFRRKDLWKVDLRD--YRNVVIFG-----AESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred --Hhc-ccchhhhhhhhhhccccc--cceEEEee-----hHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 232 257889999999876543 22213332 2445555555555 78889999876
No 216
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.11 E-value=1.5e-05 Score=70.42 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=76.4
Q ss_pred CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEE
Q psy17227 57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASI 136 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dv 136 (268)
.+||=||-|.|+.++.+.+..+..+++-|||++..+.+++ +.+.... .+...++++++.+|..++-- +....+|+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar--~~l~~~~--~~~~dpRv~i~i~Dg~~~v~-~~~~~fDv 152 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELAR--KYLPEPS--GGADDPRVEIIIDDGVEFLR-DCEEKFDV 152 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHH--HhccCcc--cccCCCceEEEeccHHHHHH-hCCCcCCE
Confidence 5999999999999999998777778999999997666654 3332211 11124689999999877431 11125788
Q ss_pred EEEecccc-Cc----CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 137 VFVNNFAF-GP----TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 137 v~~~~~~~-~~----~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
|++..+=. .| --...++.+.+.|+|+|.+++.
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99876511 11 1256678889999999999985
No 217
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.09 E-value=2.7e-05 Score=69.92 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=66.2
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
+.+|+++|||||++|+.+-.+++. |. +|+|||..+ |...+. ..++|+...+|....... ..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-G~-~V~AVD~g~-------l~~~L~--------~~~~V~h~~~d~fr~~p~--~~ 269 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-GM-FVTAVDNGP-------MAQSLM--------DTGQVEHLRADGFKFRPP--RK 269 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-CC-EEEEEechh-------cCHhhh--------CCCCEEEEeccCcccCCC--CC
Confidence 368999999999999999888764 66 499999876 222221 246899999998775421 23
Q ss_pred ceEEEEEeccccCcCHHHHHHHHHhcCCCC--cEEEEe
Q psy17227 133 QASIVFVNNFAFGPTVDHALKERFQDLKDG--ARIVSS 168 (268)
Q Consensus 133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpG--G~~i~~ 168 (268)
.+|.+++... ..+.....-+.+.|..| ..+|++
T Consensus 270 ~vDwvVcDmv---e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 270 NVDWLVCDMV---EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred CCCEEEEecc---cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 5688998866 44556666666666655 345554
No 218
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.08 E-value=4.7e-06 Score=77.70 Aligned_cols=95 Identities=16% Similarity=0.061 Sum_probs=56.7
Q ss_pred CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCC-----hhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227 57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADL-----PAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI 131 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~-----~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~ 131 (268)
.++||||||+|.++.++..+ + |+.+-+.+. ++++|. +.|.. .-+-..--..|||++++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-~---V~t~s~a~~d~~~~qvqfal----------eRGvp---a~~~~~~s~rLPfp~~~ 181 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-N---VTTMSFAPNDEHEAQVQFAL----------ERGVP---AMIGVLGSQRLPFPSNA 181 (506)
T ss_pred EEEEeccceeehhHHHHhhC-C---ceEEEcccccCCchhhhhhh----------hcCcc---hhhhhhccccccCCccc
Confidence 36899999999999877653 3 444444332 222221 22321 11111123469998887
Q ss_pred cceEEEEEecc-c-cCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227 132 TQASIVFVNNF-A-FGPTVDHALKERFQDLKDGARIVSSKS 170 (268)
Q Consensus 132 ~d~dvv~~~~~-~-~~~~~~~~l~e~~r~LkpGG~~i~~~~ 170 (268)
|| +|-+... . |.++-...|-|+-|+|+|||.|+.+.+
T Consensus 182 fD--mvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 182 FD--MVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hh--hhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 65 5544333 2 334445568899999999999998733
No 219
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.07 E-value=7e-05 Score=68.19 Aligned_cols=121 Identities=15% Similarity=0.095 Sum_probs=82.6
Q ss_pred CcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC--------------------------------c------
Q psy17227 39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGC--------------------------------K------ 80 (268)
Q Consensus 39 ~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~--------------------------------~------ 80 (268)
+-+.....++...++.++..++|-=||+|.+++.+|..... .
T Consensus 175 LketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~ 254 (381)
T COG0116 175 LKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL 254 (381)
T ss_pred chHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence 44445567888889999999999999999999998875421 0
Q ss_pred -EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccc----cCcCHHH-HHHH
Q psy17227 81 -ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFA----FGPTVDH-ALKE 154 (268)
Q Consensus 81 -~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~----~~~~~~~-~l~e 154 (268)
.++|+|+++.++..|+ .|++ ..|. .+.|+|.++|+.+++-+. ..+|+|++|..+ ....... ...+
T Consensus 255 ~~~~G~Did~r~i~~Ak--~NA~----~AGv-~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~ 325 (381)
T COG0116 255 PIIYGSDIDPRHIEGAK--ANAR----AAGV-GDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEALVAKLYRE 325 (381)
T ss_pred ceEEEecCCHHHHHHHH--HHHH----hcCC-CceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChhhHHHHHHH
Confidence 2689999998766665 4443 3565 468999999999987432 345788888663 1121122 2222
Q ss_pred H----HhcCCCCcEEEEe
Q psy17227 155 R----FQDLKDGARIVSS 168 (268)
Q Consensus 155 ~----~r~LkpGG~~i~~ 168 (268)
+ .+.++-.++++++
T Consensus 326 fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 326 FGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHHHhcCCceEEEE
Confidence 2 2566666677765
No 220
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.06 E-value=9.2e-06 Score=68.42 Aligned_cols=119 Identities=14% Similarity=0.108 Sum_probs=73.0
Q ss_pred HHHHHHcCCC------CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc-ccccEEE
Q psy17227 45 SRMIDQINAT------PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGK-RHGEFRL 117 (268)
Q Consensus 45 ~~ll~~l~~~------~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~i~~ 117 (268)
+.++.++... ...+.||.|||-|+++..+.... +.+|--||.++. .+..+++. .+. ...-.++
T Consensus 39 ~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~--Fl~~a~~~-------l~~~~~~v~~~ 108 (218)
T PF05891_consen 39 RNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEK--FLEQAKEY-------LGKDNPRVGEF 108 (218)
T ss_dssp HHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HH--HHHHHHHH-------TCCGGCCEEEE
T ss_pred HHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHh-cCEeEEeccCHH--HHHHHHHH-------hcccCCCcceE
Confidence 3466666443 35689999999999998775543 556889998875 23223222 121 1234677
Q ss_pred EEcCCCCCcccccccceEEEEEec-cccC--cCHHHHHHHHHhcCCCCcEEEEeCCCCCCC
Q psy17227 118 VKGDFLTEEHREKITQASIVFVNN-FAFG--PTVDHALKERFQDLKDGARIVSSKSFCPLN 175 (268)
Q Consensus 118 ~~gD~~~l~~~~~~~d~dvv~~~~-~~~~--~~~~~~l~e~~r~LkpGG~~i~~~~~~~~~ 175 (268)
.+.-+.++.... ..+|+|++.= ..|. .++...|+++...|+|||.|++-+.....+
T Consensus 109 ~~~gLQ~f~P~~--~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~ 167 (218)
T PF05891_consen 109 YCVGLQDFTPEE--GKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG 167 (218)
T ss_dssp EES-GGG----T--T-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS
T ss_pred EecCHhhccCCC--CcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC
Confidence 877777654322 3578999752 2344 558888999999999999999976665543
No 221
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.05 E-value=9.5e-06 Score=70.44 Aligned_cols=110 Identities=16% Similarity=0.131 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc-
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT- 132 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~- 132 (268)
.+..+||=||-|.|..++.+.+..+..+++.||+++..+.+++ +.+.... .+...++++++.+|....=- ....
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~--~~f~~~~--~~~~d~r~~i~~~Dg~~~l~-~~~~~ 149 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELAR--KYFPEFS--EGLDDPRVRIIIGDGRKFLK-ETQEE 149 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHH--HHTHHHH--TTGGSTTEEEEESTHHHHHH-TSSST
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHH--Hhchhhc--cccCCCceEEEEhhhHHHHH-hccCC
Confidence 3567899999999999999877655667999999998666655 3333211 11235699999999866321 1112
Q ss_pred ceEEEEEeccc-cCcC----HHHHHHHHHhcCCCCcEEEEe
Q psy17227 133 QASIVFVNNFA-FGPT----VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 133 d~dvv~~~~~~-~~~~----~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+|+|++..+- ..+. -...++.+.+.|+|||.+++.
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 150 KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp -EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 57899987652 1111 246678888999999999974
No 222
>KOG1663|consensus
Probab=98.03 E-value=8.9e-05 Score=62.73 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=78.6
Q ss_pred cCCCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc--
Q psy17227 51 INATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE-- 126 (268)
Q Consensus 51 l~~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~-- 126 (268)
+.+-..+++||||-=||.-++.+|...+.. +|+++|++++...+.. + ..+..|. ..+|++++|++.+ ++
T Consensus 69 i~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~--~----~~k~agv-~~KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 69 IRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGL--E----LVKLAGV-DHKITFIEGPALESLDEL 141 (237)
T ss_pred HHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhH--H----HHHhccc-cceeeeeecchhhhHHHH
Confidence 344556789999999999888888876543 7999999997555542 2 2223444 4699999999875 32
Q ss_pred ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227 127 HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCP 173 (268)
Q Consensus 127 ~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~~~ 173 (268)
..+ +...+|.+|+.+. -..-...+.+..+.+|+||.+++-....+
T Consensus 142 ~~~~~~~tfDfaFvDad--K~nY~~y~e~~l~Llr~GGvi~~DNvl~~ 187 (237)
T KOG1663|consen 142 LADGESGTFDFAFVDAD--KDNYSNYYERLLRLLRVGGVIVVDNVLWP 187 (237)
T ss_pred HhcCCCCceeEEEEccc--hHHHHHHHHHHHhhcccccEEEEeccccC
Confidence 111 2345678898733 22334667888999999999998533433
No 223
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.03 E-value=2e-05 Score=68.99 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=70.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH-HHHHHHHH-----------------H--HHh------
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRW-----------------M--QWY------ 108 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~-~~~~~~~~-----------------~--~~~------ 108 (268)
...+||--|||.|+++..+|.. |.. |.|.|.|-.|..... +.....+. . +..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3568999999999999999986 776 999999987644443 22210000 0 000
Q ss_pred ------ccccccEEEEEcCCCCCcccc---cccceEEEEEeccc-cCcCHHHHHHHHHhcCCCCcEEE
Q psy17227 109 ------GKRHGEFRLVKGDFLTEEHRE---KITQASIVFVNNFA-FGPTVDHALKERFQDLKDGARIV 166 (268)
Q Consensus 109 ------~~~~~~i~~~~gD~~~l~~~~---~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~LkpGG~~i 166 (268)
-....+++...|||.+...++ +.+|+ |+++ -++ ..+++...+..|.++|||||..|
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~-VvT~-FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDV-VVTC-FFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccE-EEEE-EEeechHHHHHHHHHHHHHhccCCEEE
Confidence 001247889999998865443 34444 3333 122 23567888999999999999544
No 224
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=8.9e-05 Score=67.78 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=77.5
Q ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC--cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGC--KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~--~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
....++.+||.+|||+.++.|+=+.++|..... ..|+++|+++. ++..+.+++++ .|. .++..++.|...
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~--Rl~~l~~nl~R----lG~--~nv~~~~~d~~~ 219 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPK--RLKRLRENLKR----LGV--RNVIVVNKDARR 219 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHH--HHHHHHHHHHH----cCC--CceEEEeccccc
Confidence 445679999999999999999999999987643 33699999986 55556666654 454 468889999876
Q ss_pred Cccccccc-ceEEEEEecccc-------CcC----------------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EEHREKIT-QASIVFVNNFAF-------GPT----------------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~~~~~~~-d~dvv~~~~~~~-------~~~----------------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++-..... .+|.|++.+.|- .|+ ..+.|...++.|||||+++-+
T Consensus 220 ~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 55211111 256677554331 111 112356667899999999854
No 225
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.01 E-value=2.4e-05 Score=65.55 Aligned_cols=112 Identities=14% Similarity=0.226 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCCHH----HHHHHHH----hC-CcEEEEEeCCCChhHHHHH------------HHHHHHHH-HHhccc-
Q psy17227 55 PDDVFVDLGSGVGQV----VLQVAAA----TG-CKICWGVEKADLPAKYAEM------------HTVFKRWM-QWYGKR- 111 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~----~~~la~~----~~-~~~v~GiD~s~~~~~~a~~------------~~~~~~~~-~~~~~~- 111 (268)
+.-+|...||++|.= ++.+... .+ .-+++|.|+|+.++..|+. ....+++. ...+..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 456899999999963 3333331 12 1269999999986666552 11112221 111100
Q ss_pred ------cccEEEEEcCCCCCcccccccceEEEEEecc--ccCcC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227 112 ------HGEFRLVKGDFLTEEHREKITQASIVFVNNF--AFGPT-VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 112 ------~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~--~~~~~-~~~~l~e~~r~LkpGG~~i~~ 168 (268)
..+|+|.+.|+.+.+. ...++|+|+|-++ ++.++ ..+.+..+++.|+|||.+++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~--~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDP--PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S--------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCc--ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 1479999999998221 2246799999776 35544 455678888999999999985
No 226
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.00 E-value=6.9e-05 Score=65.79 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=60.3
Q ss_pred CEEEEEcCCCCH-HHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHH-HhccccccEEEEEcCCCCCcccccccc
Q psy17227 57 DVFVDLGSGVGQ-VVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQ-WYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 57 ~~vLDiGCG~G~-~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.+|+=||||.== .++.+++.++. ..|+++|+++.+..+++ +.++ ..|+ ..+++|+++|..+.+. +..+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~------~lv~~~~~L-~~~m~f~~~d~~~~~~--dl~~ 192 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR------RLVASDLGL-SKRMSFITADVLDVTY--DLKE 192 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH------HHHH---HH--SSEEEEES-GGGG-G--G---
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH------HHHhhcccc-cCCeEEEecchhcccc--cccc
Confidence 499999999644 46666766653 35899999998655554 2222 1233 3589999999987653 2235
Q ss_pred eEEEEEeccc--cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFA--FGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~--~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|+|++.+.. -..+..+.+..+.+.++||++++.-
T Consensus 193 ~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 193 YDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred CCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 6788876653 2347888999999999999999875
No 227
>PRK00536 speE spermidine synthase; Provisional
Probab=97.95 E-value=6.8e-05 Score=65.49 Aligned_cols=100 Identities=12% Similarity=-0.001 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
....+||=||-|.|+.++.+.+. +. +|+-|||++..+.+++ +.+..... +..+++++++.. +.+ .....
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k--~~lP~~~~--~~~DpRv~l~~~-~~~----~~~~~ 139 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFI--SFFPHFHE--VKNNKNFTHAKQ-LLD----LDIKK 139 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHH--HHCHHHHH--hhcCCCEEEeeh-hhh----ccCCc
Confidence 44578999999999999998875 44 6999999998666665 33333211 345678888762 211 11134
Q ss_pred eEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|||++.++ + ....++.+.|.|+|||.+++-
T Consensus 140 fDVIIvDs~-~---~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 140 YDLIICLQE-P---DIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CCEEEEcCC-C---ChHHHHHHHHhcCCCcEEEEC
Confidence 688888754 2 256678889999999999974
No 228
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.95 E-value=3.3e-05 Score=61.20 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=60.2
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHH-----HhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc-cccEEEEEcCCCCC
Q psy17227 52 NATPDDVFVDLGSGVGQVVLQVAA-----ATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR-HGEFRLVKGDFLTE 125 (268)
Q Consensus 52 ~~~~~~~vLDiGCG~G~~~~~la~-----~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~i~~~~gD~~~l 125 (268)
...+..+|+|+|||.|.+++.++. ..+.. |+|||.++.....+. +..+ ..+.. ..++++..+++.+.
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~-v~~iD~~~~~~~~a~--~~~~----~~~~~~~~~~~~~~~~~~~~ 94 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLR-VLGIDCNESLVESAQ--KRAQ----KLGSDLEKRLSFIQGDIADE 94 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCe-EEEEECCcHHHHHHH--HHHH----Hhcchhhccchhhccchhhh
Confidence 346788999999999999999988 44444 999999997433332 2222 22211 24677888877654
Q ss_pred cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227 126 EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~ 167 (268)
+.. ...++++.- +-..++...+-+++-. |+..+++
T Consensus 95 ~~~---~~~~~~vgL--HaCG~Ls~~~l~~~~~--~~~~~l~ 129 (141)
T PF13679_consen 95 SSS---DPPDILVGL--HACGDLSDRALRLFIR--PNARFLV 129 (141)
T ss_pred ccc---CCCeEEEEe--ecccchHHHHHHHHHH--cCCCEEE
Confidence 321 122344432 2234555554444433 6665554
No 229
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.93 E-value=1.1e-05 Score=73.69 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=47.0
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
+..+++.++..++ +|||+-||.|.+++.+|.. +.+|+|||+++.++..|+ ++++ ..+ ..|++|+++++.
T Consensus 186 ~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~--~Na~----~N~--i~n~~f~~~~~~ 254 (352)
T PF05958_consen 186 YEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDAR--ENAK----LNG--IDNVEFIRGDAE 254 (352)
T ss_dssp HHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHH--HHHH----HTT----SEEEEE--SH
T ss_pred HHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHH--HHHH----HcC--CCcceEEEeecc
Confidence 3456677777766 7999999999999998875 345999999998555554 4443 233 358999998875
Q ss_pred CC
Q psy17227 124 TE 125 (268)
Q Consensus 124 ~l 125 (268)
++
T Consensus 255 ~~ 256 (352)
T PF05958_consen 255 DF 256 (352)
T ss_dssp HC
T ss_pred ch
Confidence 53
No 230
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.91 E-value=7.2e-06 Score=61.49 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=44.2
Q ss_pred EEEcCCCCHHHHHHHHHhCCc---EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-c-ccccccce
Q psy17227 60 VDLGSGVGQVVLQVAAATGCK---ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-E-HREKITQA 134 (268)
Q Consensus 60 LDiGCG~G~~~~~la~~~~~~---~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~-~~~~~~d~ 134 (268)
|+|||..|..+..+++..... +++++|..+. .....+.++ ..+. ..+++++++|..+. + +. ...+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~---~~~~~~~~~----~~~~-~~~~~~~~g~s~~~l~~~~--~~~~ 70 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG---DEQAQEIIK----KAGL-SDRVEFIQGDSPDFLPSLP--DGPI 70 (106)
T ss_dssp --------------------------EEEESS-------------------GGG--BTEEEEES-THHHHHHHH--H--E
T ss_pred CccccccccccccccccccccccCCEEEEECCCc---ccccchhhh----hcCC-CCeEEEEEcCcHHHHHHcC--CCCE
Confidence 689999999988877643222 5899999984 111222222 2233 24799999999753 2 22 2367
Q ss_pred EEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 135 SIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 135 dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
|++++..-+-.+.....+..+...|+|||.+++-
T Consensus 71 dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 71 DLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 8999987644455677788889999999999884
No 231
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.84 E-value=0.00012 Score=70.31 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCC--------cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGC--------KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~--------~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
.+.+|||.|||+|.++..++..... ..++|+|+++.++..++ .++.. .+ ...+.++++|+....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~--~~l~~----~~--~~~~~i~~~d~l~~~ 102 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK--KLLGE----FA--LLEINVINFNSLSYV 102 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH--HHHhh----cC--CCCceeeeccccccc
Confidence 3468999999999999988876521 34899999997555554 22221 11 124566777755322
Q ss_pred c---cccccceEEEEEecc
Q psy17227 127 H---REKITQASIVFVNNF 142 (268)
Q Consensus 127 ~---~~~~~d~dvv~~~~~ 142 (268)
+ .+....+|+|+.|..
T Consensus 103 ~~~~~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 103 LLNIESYLDLFDIVITNPP 121 (524)
T ss_pred ccccccccCcccEEEeCCC
Confidence 1 111124688888865
No 232
>KOG2187|consensus
Probab=97.78 E-value=1.9e-05 Score=73.70 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=52.9
Q ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
+=+++++..+..+||+-||||.+++.+|+ +..+|+||++++.++.-|+ .++. ..| ..|++|++|-++++
T Consensus 375 i~e~~~l~~~k~llDv~CGTG~iglala~--~~~~ViGvEi~~~aV~dA~--~nA~----~Ng--isNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 375 IGEWAGLPADKTLLDVCCGTGTIGLALAR--GVKRVIGVEISPDAVEDAE--KNAQ----ING--ISNATFIVGQAEDL 443 (534)
T ss_pred HHHHhCCCCCcEEEEEeecCCceehhhhc--cccceeeeecChhhcchhh--hcch----hcC--ccceeeeecchhhc
Confidence 44678899999999999999999987776 4555999999998666554 3332 234 35999999977764
No 233
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00039 Score=59.24 Aligned_cols=109 Identities=15% Similarity=0.225 Sum_probs=73.7
Q ss_pred HHHHHHHcCCC-CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcccccc-EEEEEcC
Q psy17227 44 ISRMIDQINAT-PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGE-FRLVKGD 121 (268)
Q Consensus 44 ~~~ll~~l~~~-~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-i~~~~gD 121 (268)
+...++..++. +|..+||||+-||+++-.+ .+.|+.+|+|||..-. +++. .++ ..++ +.+...|
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~l-Lq~gAk~VyavDVG~~--Ql~~---kLR--------~d~rV~~~E~tN 132 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVL-LQRGAKHVYAVDVGYG--QLHW---KLR--------NDPRVIVLERTN 132 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHH-HHcCCcEEEEEEccCC--ccCH---hHh--------cCCcEEEEecCC
Confidence 34566777776 5788999999999999765 4578989999999986 3332 111 1223 4566667
Q ss_pred CCCCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 122 FLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 122 ~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++.+...+-....|++++... | ..+...|..+...++||+.++..
T Consensus 133 ~r~l~~~~~~~~~d~~v~DvS-F-ISL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 133 VRYLTPEDFTEKPDLIVIDVS-F-ISLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred hhhCCHHHcccCCCeEEEEee-h-hhHHHHHHHHHHhcCCCceEEEE
Confidence 766543222223456666532 1 45677888999999999998874
No 234
>KOG3115|consensus
Probab=97.77 E-value=3.9e-05 Score=63.64 Aligned_cols=108 Identities=16% Similarity=0.236 Sum_probs=62.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHH-HHhccccccEEEEEcCCCC-Ccccccccc
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWM-QWYGKRHGEFRLVKGDFLT-EEHREKITQ 133 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~i~~~~gD~~~-l~~~~~~~d 133 (268)
.-.+.|||||.|+++..++-.++..-+.|++|-......- ++++++.. ...+....|+.+...+... +| +.|.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYV--k~RI~ALR~~~a~~~~~ni~vlr~namk~lp---n~f~ 135 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYV--KERIQALRRTSAEGQYPNISVLRTNAMKFLP---NFFE 135 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHH--HHHHHHHhccccccccccceeeeccchhhcc---chhh
Confidence 3469999999999999999999998899999986433332 23333211 0111224578888877765 33 2111
Q ss_pred ---eE-EEEEe-ccccCcC-------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 134 ---AS-IVFVN-NFAFGPT-------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ---~d-vv~~~-~~~~~~~-------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+ ..++. ..+++.. -...+.+..=+|++||.++..
T Consensus 136 kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115|consen 136 KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred hcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence 11 11111 1111111 112345555689999999854
No 235
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.76 E-value=0.00016 Score=64.14 Aligned_cols=114 Identities=17% Similarity=0.217 Sum_probs=78.2
Q ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
....+...+|.+|||+.+|.|+=+.++|...+ ...+++.|+++. ++..+.+++++ .|. .++..++.|..++
T Consensus 77 ~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~--Rl~~l~~~~~r----~g~--~~v~~~~~D~~~~ 148 (283)
T PF01189_consen 77 VALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPK--RLKRLKENLKR----LGV--FNVIVINADARKL 148 (283)
T ss_dssp HHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHH--HHHHHHHHHHH----TT---SSEEEEESHHHHH
T ss_pred ccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHH--HHHHHHHHHHh----cCC--ceEEEEeeccccc
Confidence 44557889999999999999999999998876 447999999985 55555555543 443 4788888888776
Q ss_pred cccccccceEEEEEecccc-------CcCH----------------HHHHHHHHhcC----CCCcEEEEe
Q psy17227 126 EHREKITQASIVFVNNFAF-------GPTV----------------DHALKERFQDL----KDGARIVSS 168 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~~~~-------~~~~----------------~~~l~e~~r~L----kpGG~~i~~ 168 (268)
........+|.|++...|- .|+. .+.|....+.+ ||||+++-+
T Consensus 149 ~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYs 218 (283)
T PF01189_consen 149 DPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYS 218 (283)
T ss_dssp HHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEE
T ss_pred cccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEE
Confidence 3211112367788765431 1221 11245666889 999999844
No 236
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.75 E-value=0.0003 Score=61.62 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCCCH----HHHHHHHHhCC-----cEEEEEeCCCChhHHHHHH----HHH---------HHHHHHhccc-
Q psy17227 55 PDDVFVDLGSGVGQ----VVLQVAAATGC-----KICWGVEKADLPAKYAEMH----TVF---------KRWMQWYGKR- 111 (268)
Q Consensus 55 ~~~~vLDiGCG~G~----~~~~la~~~~~-----~~v~GiD~s~~~~~~a~~~----~~~---------~~~~~~~~~~- 111 (268)
..-+|.-.||+||. +++.+....+. -+|+|.|||..++..|++- ... +++-...+..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 35689999999995 45544454431 3699999999866666521 111 1111111110
Q ss_pred -------cccEEEEEcCCCCCcccccccceEEEEEecc--ccCcC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227 112 -------HGEFRLVKGDFLTEEHREKITQASIVFVNNF--AFGPT-VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 112 -------~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~--~~~~~-~~~~l~e~~r~LkpGG~~i~~ 168 (268)
...|.|.+.|..+-++ ....+|+|+|-++ ++... ..+.+...+..|+|||.+++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1368899999887552 1235789999766 35544 455677888999999999974
No 237
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.73 E-value=9.4e-05 Score=58.22 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=41.9
Q ss_pred EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
+|||||||.|..+..+++..+..+++++|.++.+... ++++++ ..+. .++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~--l~~~~~----~n~~--~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEI--LEENVK----LNNL--PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHH--HHHHHH----HcCC--CcEEEEEeeeeC
Confidence 4899999999999998887655469999999973332 223322 2232 368888887765
No 238
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.0006 Score=56.71 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=75.2
Q ss_pred HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-c
Q psy17227 49 DQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-H 127 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-~ 127 (268)
..+++++|++||=||.-+|...-+++...|...++|||.|+.+ ..+....+++ -.|+--+.+|+.... +
T Consensus 70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~--~reLl~~a~~--------R~Ni~PIL~DA~~P~~Y 139 (231)
T COG1889 70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRP--MRELLDVAEK--------RPNIIPILEDARKPEKY 139 (231)
T ss_pred ccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchh--HHHHHHHHHh--------CCCceeeecccCCcHHh
Confidence 3457899999999999999999999998886679999999963 2222222221 258889999998744 1
Q ss_pred cccccceEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 128 REKITQASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 128 ~~~~~d~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
.--...+|+|+..-. .|+..+.+ .++-.-||+||.+++.
T Consensus 140 ~~~Ve~VDviy~DVA--Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 140 RHLVEKVDVIYQDVA--QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred hhhcccccEEEEecC--CchHHHHHHHHHHHhcccCCeEEEE
Confidence 111235788887632 34544444 5556789999976654
No 239
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.66 E-value=0.00035 Score=61.63 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=36.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHH
Q psy17227 45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAE 96 (268)
Q Consensus 45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~ 96 (268)
.++-..++.-...+|||+|||+|..+..+...++ ...++++|.|+.|..+++
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~ 75 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAK 75 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHH
Confidence 3344444333456899999999988765555555 347899999998777665
No 240
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.66 E-value=0.00032 Score=59.06 Aligned_cols=82 Identities=11% Similarity=0.128 Sum_probs=57.6
Q ss_pred CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc-cccceE
Q psy17227 57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE-KITQAS 135 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~-~~~d~d 135 (268)
-++|||||=+...... ..+.-.|+.||+++. .-.+.+.||.+.|.+. +...+|
T Consensus 53 lrlLEVGals~~N~~s---~~~~fdvt~IDLns~-----------------------~~~I~qqDFm~rplp~~~~e~Fd 106 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ-----------------------HPGILQQDFMERPLPKNESEKFD 106 (219)
T ss_pred ceEEeecccCCCCccc---ccCceeeEEeecCCC-----------------------CCCceeeccccCCCCCCccccee
Confidence 5899999986655432 244445999999973 2336888999988642 234577
Q ss_pred EEEEeccc-cCcCHHH---HHHHHHhcCCCCcE
Q psy17227 136 IVFVNNFA-FGPTVDH---ALKERFQDLKDGAR 164 (268)
Q Consensus 136 vv~~~~~~-~~~~~~~---~l~e~~r~LkpGG~ 164 (268)
+|++..++ +.|++.+ .++.+++.|+|+|.
T Consensus 107 vIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 107 VISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 88776653 6666544 47788899999998
No 241
>KOG3987|consensus
Probab=97.62 E-value=4.8e-05 Score=63.33 Aligned_cols=109 Identities=14% Similarity=0.178 Sum_probs=69.6
Q ss_pred CcHHHHHHHHHHcCCC---CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccE
Q psy17227 39 TSFDLISRMIDQINAT---PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEF 115 (268)
Q Consensus 39 ~~~~~~~~ll~~l~~~---~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i 115 (268)
.+++.+++++.--+.. ...++||+|.|.|.++..++-.+. .|++.++|.. |+.++++ .+.
T Consensus 93 fSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~t------Mr~rL~k---------k~y 155 (288)
T KOG3987|consen 93 FSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWT------MRDRLKK---------KNY 155 (288)
T ss_pred ecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHH------HHHHHhh---------cCC
Confidence 3456677766544322 245899999999999998776543 3788888875 4444432 122
Q ss_pred EEEEcCCCCCcccccccceEEEEEeccc-cCcCHHHHHHHHHhcCCC-CcEEEEe
Q psy17227 116 RLVKGDFLTEEHREKITQASIVFVNNFA-FGPTVDHALKERFQDLKD-GARIVSS 168 (268)
Q Consensus 116 ~~~~gD~~~l~~~~~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~Lkp-GG~~i~~ 168 (268)
.++-. .+.- ...+..|+|++-+.+ -..++-+.++.+..+|.| +|++|+.
T Consensus 156 nVl~~--~ew~--~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 156 NVLTE--IEWL--QTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ceeee--hhhh--hcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 22111 1111 122456788876653 345678899999999999 8998875
No 242
>KOG2730|consensus
Probab=97.62 E-value=1.9e-05 Score=66.20 Aligned_cols=63 Identities=27% Similarity=0.334 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
.-..|+|.-||.|+-++..|.+ ++. |++||++|. .++.++++++ -.|.. .+|+|+|||+.++-
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-~~~-VisIdiDPi--kIa~AkhNae----iYGI~-~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-GPY-VIAIDIDPV--KIACARHNAE----VYGVP-DRITFICGDFLDLA 156 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-CCe-EEEEeccHH--HHHHHhccce----eecCC-ceeEEEechHHHHH
Confidence 4457999999999999999886 444 899999985 7777667665 34654 49999999998753
No 243
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.62 E-value=0.00012 Score=60.47 Aligned_cols=118 Identities=15% Similarity=0.154 Sum_probs=74.0
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCCChh----HHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPA----KYAEMHTVFKRWMQWYGKRHGEFRLVKG 120 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~~~~----~~a~~~~~~~~~~~~~~~~~~~i~~~~g 120 (268)
+++...++++|++|+|+=-|.|.+++.++...|.. .|++.-..+... .-.+++...+ +. ...|++.+-.
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~----e~--~~aN~e~~~~ 112 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAR----EP--VYANVEVIGK 112 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhh----hh--hhhhhhhhCC
Confidence 46677899999999999999999999988876654 577765544210 0011111111 11 1235555655
Q ss_pred CCCCCcccccccceEEEEE--------eccccCcCHHHHHHHHHhcCCCCcEEEEeCCCC
Q psy17227 121 DFLTEEHREKITQASIVFV--------NNFAFGPTVDHALKERFQDLKDGARIVSSKSFC 172 (268)
Q Consensus 121 D~~~l~~~~~~~d~dvv~~--------~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~~~ 172 (268)
+...++.+++ .|+++- +..+|.....++...+++.|||||.+++.++..
T Consensus 113 ~~~A~~~pq~---~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 113 PLVALGAPQK---LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred cccccCCCCc---ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 6555442222 233332 223454556778899999999999999986554
No 244
>KOG3191|consensus
Probab=97.61 E-value=0.00069 Score=55.44 Aligned_cols=88 Identities=11% Similarity=0.201 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD 121 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD 121 (268)
.+.+-...+.-....-++|||||+|-.+-.+++..+ .....++|++|.+... .++.++. + ..++..++.|
T Consensus 31 aLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~--Tl~TA~~----n---~~~~~~V~td 101 (209)
T KOG3191|consen 31 ALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEA--TLETARC----N---RVHIDVVRTD 101 (209)
T ss_pred HHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHH--HHHHHHh----c---CCccceeehh
Confidence 334434444444467899999999999988888654 3457999999963333 2233331 1 2368889999
Q ss_pred CCCCcccccccceEEEEEecc
Q psy17227 122 FLTEEHREKITQASIVFVNNF 142 (268)
Q Consensus 122 ~~~l~~~~~~~d~dvv~~~~~ 142 (268)
+.+--- . ..+||+..|..
T Consensus 102 l~~~l~-~--~~VDvLvfNPP 119 (209)
T KOG3191|consen 102 LLSGLR-N--ESVDVLVFNPP 119 (209)
T ss_pred HHhhhc-c--CCccEEEECCC
Confidence 875221 1 35677777654
No 245
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.60 E-value=0.00062 Score=64.90 Aligned_cols=147 Identities=20% Similarity=0.264 Sum_probs=89.4
Q ss_pred HHHHHHHHhhcCCccccccCCCCCCCCcccCc-HHHHHH-HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCC----cEE
Q psy17227 9 HIIQQTYNQSVTEPEKLNVYQPFSPFVYGETS-FDLISR-MIDQINATPDDVFVDLGSGVGQVVLQVAAATGC----KIC 82 (268)
Q Consensus 9 ~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~-~~~~~~-ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~----~~v 82 (268)
+++..+|.. .++.|+.-.....|+.+ ++.+.+ +++.+...+..+|+|-.||+|++....++..+. ..+
T Consensus 144 d~~G~~yE~------ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~ 217 (489)
T COG0286 144 DLFGDAYEY------LLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFI 217 (489)
T ss_pred cchhHHHHH------HHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeE
Confidence 455555555 33445444444445532 444544 555667778889999999999999988776642 348
Q ss_pred EEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc---cccceEEEEEecccc----C----------
Q psy17227 83 WGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE---KITQASIVFVNNFAF----G---------- 145 (268)
Q Consensus 83 ~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~---~~~d~dvv~~~~~~~----~---------- 145 (268)
+|.|+++....+++|+..+. |... ++....+|-..-|..+ ....+|.|.+|.... .
T Consensus 218 yGqE~~~~t~~l~~mN~~lh------gi~~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~ 290 (489)
T COG0286 218 YGQEINDTTYRLAKMNLILH------GIEG-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDE 290 (489)
T ss_pred EEEeCCHHHHHHHHHHHHHh------CCCc-cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccc
Confidence 99999998888888765443 3222 4566666655433221 222355565543321 0
Q ss_pred ---------cC--H-HHHHHHHHhcCCCCcEEEEe
Q psy17227 146 ---------PT--V-DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 146 ---------~~--~-~~~l~e~~r~LkpGG~~i~~ 168 (268)
+. - ...+..+...|+|||+..+.
T Consensus 291 ~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 291 RFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 11 1 34568888999998866543
No 246
>KOG4589|consensus
Probab=97.56 E-value=0.00041 Score=57.00 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=63.9
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHh-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc-CCCCCccc--
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAAT-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG-DFLTEEHR-- 128 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g-D~~~l~~~-- 128 (268)
++|+++|||+||-+|.-+.-+.++. +...|.|||+-.- .....+.++++ |+.+....
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-------------------~p~~Ga~~i~~~dvtdp~~~~k 127 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-------------------EPPEGATIIQGNDVTDPETYRK 127 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-------------------cCCCCcccccccccCCHHHHHH
Confidence 5789999999999999997666665 5557999999752 01235777777 77764310
Q ss_pred ----ccccceEEEEEeccccC-----cCHHHHHHHH-------HhcCCCCcEEEEe
Q psy17227 129 ----EKITQASIVFVNNFAFG-----PTVDHALKER-------FQDLKDGARIVSS 168 (268)
Q Consensus 129 ----~~~~d~dvv~~~~~~~~-----~~~~~~l~e~-------~r~LkpGG~~i~~ 168 (268)
.+...+|+|++.+.... .|....+.-+ ...++|+|.|++-
T Consensus 128 i~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 128 IFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred HHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 11245788988755321 2333333222 2468999999985
No 247
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.56 E-value=0.00025 Score=58.60 Aligned_cols=106 Identities=12% Similarity=0.158 Sum_probs=70.7
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227 52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI 131 (268)
Q Consensus 52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~ 131 (268)
..-.|++|||+|+|.|-.++..|+ .|...|+..|+.|......+ -+++ .+| -.+.|+..|..- + +
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~-aGA~~v~a~d~~P~~~~ai~--lNa~----ang---v~i~~~~~d~~g-~--~-- 140 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAAR-AGAAEVVAADIDPWLEQAIR--LNAA----ANG---VSILFTHADLIG-S--P-- 140 (218)
T ss_pred cccccceeeecccccChHHHHHHH-hhhHHHHhcCCChHHHHHhh--cchh----hcc---ceeEEeeccccC-C--C--
Confidence 344689999999999999986554 68888999999986222222 2222 122 378899988865 2 1
Q ss_pred cceEEEEEeccccCcCHHHHHHHHHhcCCCCcE-EEEeCCCC
Q psy17227 132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGAR-IVSSKSFC 172 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~-~i~~~~~~ 172 (268)
..+|++....+++....-..+-..++.|+..|. +++-++-+
T Consensus 141 ~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 141 PAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred cceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 256888888887777766666667766655444 44444443
No 248
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.49 E-value=0.00058 Score=60.88 Aligned_cols=89 Identities=18% Similarity=0.391 Sum_probs=65.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
.+..+++.+.+.+|..++|.=||.|+.+..++...+..+|+|+|.++.++..++ +.+.. . ..+++++++++
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak--~~L~~----~---~~R~~~i~~nF 78 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAK--ERLSD----F---EGRVVLIHDNF 78 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHH--HHHhh----c---CCcEEEEeCCH
Confidence 456788889999999999999999999999998765466999999997554443 33321 1 24899999999
Q ss_pred CCCcc--cc-cccceEEEEEe
Q psy17227 123 LTEEH--RE-KITQASIVFVN 140 (268)
Q Consensus 123 ~~l~~--~~-~~~d~dvv~~~ 140 (268)
.+++- .. +...+|.|+.+
T Consensus 79 ~~l~~~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 79 ANFFEHLDELLVTKIDGILVD 99 (305)
T ss_pred HHHHHHHHhcCCCcccEEEEe
Confidence 98652 11 22346777765
No 249
>PRK10742 putative methyltransferase; Provisional
Probab=97.46 E-value=0.0005 Score=59.34 Aligned_cols=93 Identities=17% Similarity=0.272 Sum_probs=62.6
Q ss_pred HHHHHcCCCCCC--EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHH--Hhccc-cccEEEEEc
Q psy17227 46 RMIDQINATPDD--VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQ--WYGKR-HGEFRLVKG 120 (268)
Q Consensus 46 ~ll~~l~~~~~~--~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~--~~~~~-~~~i~~~~g 120 (268)
.+++.+++++|. +|||+=+|+|..++.+|. .|+. |++||-++....+- .+.+++... +.+.. ..+++++++
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las-~G~~-V~~vEr~p~vaalL--~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLAS-VGCR-VRMLERNPVVAALL--DDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHH-cCCE-EEEEECCHHHHHHH--HHHHHHhhhccccchhhhceEEEEeC
Confidence 377788999998 999999999999998776 5888 99999999643332 233332100 00110 147999999
Q ss_pred CCCCCcccccccceEEEEEeccc
Q psy17227 121 DFLTEEHREKITQASIVFVNNFA 143 (268)
Q Consensus 121 D~~~l~~~~~~~d~dvv~~~~~~ 143 (268)
|..++--. ....+|+|+....+
T Consensus 153 da~~~L~~-~~~~fDVVYlDPMf 174 (250)
T PRK10742 153 SSLTALTD-ITPRPQVVYLDPMF 174 (250)
T ss_pred cHHHHHhh-CCCCCcEEEECCCC
Confidence 98764211 11246889987553
No 250
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.43 E-value=0.00014 Score=63.29 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=59.5
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHH------------HHHHhccc---------
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKR------------WMQWYGKR--------- 111 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~------------~~~~~~~~--------- 111 (268)
-.+|.++||||||+--.-. ++..--+..++..|.++. -....++.+++ .|...|..
T Consensus 54 ~~~g~~llDiGsGPtiy~~-lsa~~~f~~I~l~dy~~~--N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQL-LSACEWFEEIVLSDYSEQ--NREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp SS-EEEEEEES-TT--GGG-TTGGGTEEEEEEEESSHH--HHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhh-hhHHHhhcceEEeeccHh--hHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 3467899999999844432 333334556999999874 11111111111 01111110
Q ss_pred -cccE-EEEEcCCCCCc-ccc--ccc-ceEEEEEeccc--cCc---CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 112 -HGEF-RLVKGDFLTEE-HRE--KIT-QASIVFVNNFA--FGP---TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 112 -~~~i-~~~~gD~~~l~-~~~--~~~-d~dvv~~~~~~--~~~---~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
-..| +++..|+.+.+ +.. ... .+|+|++.-.+ -.+ ....+++++.+.|||||.||+.
T Consensus 131 lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp HHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 0124 37889998855 322 122 37777654221 223 3566789999999999999986
No 251
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.34 E-value=0.0013 Score=59.39 Aligned_cols=121 Identities=14% Similarity=0.118 Sum_probs=78.3
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc-cccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH-REKI 131 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~-~~~~ 131 (268)
++...+||=+|-|.|-.++++.+.-+..+++-+|++|.|+.+++-...+++ .......+++++++..|+.++-- ..+
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~-~N~~sf~dpRv~Vv~dDAf~wlr~a~~- 364 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRA-LNQGSFSDPRVTVVNDDAFQWLRTAAD- 364 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhh-hccCCccCCeeEEEeccHHHHHHhhcc-
Confidence 345678999999999999998875557789999999998888763233322 11223345689999999987542 122
Q ss_pred cceEEEEEecc-ccCcCHHHH-----HHHHHhcCCCCcEEEEe--CCCC-CCCc
Q psy17227 132 TQASIVFVNNF-AFGPTVDHA-----LKERFQDLKDGARIVSS--KSFC-PLNF 176 (268)
Q Consensus 132 ~d~dvv~~~~~-~~~~~~~~~-----l~e~~r~LkpGG~~i~~--~~~~-~~~~ 176 (268)
.+|++++... --.+...+. ..-..|.|+++|++++- +++. |+-|
T Consensus 365 -~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vf 417 (508)
T COG4262 365 -MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVF 417 (508)
T ss_pred -cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCcee
Confidence 3466776532 111222222 34445789999999965 3433 4444
No 252
>KOG2352|consensus
Probab=97.28 E-value=0.00094 Score=62.35 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=73.1
Q ss_pred CCCCC-EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227 53 ATPDD-VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI 131 (268)
Q Consensus 53 ~~~~~-~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~ 131 (268)
+.+-. ++|-+|||.-.+...+-+ .|..-++-+|+|+. .++.|..... .......+...|+..+.|++.+
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~-~G~~dI~~iD~S~V--~V~~m~~~~~-------~~~~~~~~~~~d~~~l~fedES 114 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYK-NGFEDITNIDSSSV--VVAAMQVRNA-------KERPEMQMVEMDMDQLVFEDES 114 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHh-cCCCCceeccccHH--HHHHHHhccc-------cCCcceEEEEecchhccCCCcc
Confidence 34555 999999999999987644 67777999999985 5555543211 1245799999999999998877
Q ss_pred cceEEEEEeccc---cCc--------CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 132 TQASIVFVNNFA---FGP--------TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 132 ~d~dvv~~~~~~---~~~--------~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
|+ +|+--.++ +.+ .....+.++.|+|+|||++++.
T Consensus 115 Fd--iVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 115 FD--IVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred ee--EEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 65 44432221 111 1234478899999999998864
No 253
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.21 E-value=0.0029 Score=53.14 Aligned_cols=107 Identities=14% Similarity=0.222 Sum_probs=56.6
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHH---h-CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAA---T-GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE 129 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~---~-~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~ 129 (268)
+| ++|+++|.=.|+-++..|.. . +..+|+|||++... ..+ .. ...... .++|++++||..+...-+
T Consensus 32 kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~--~~~--~a----~e~hp~-~~rI~~i~Gds~d~~~~~ 101 (206)
T PF04989_consen 32 KP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP--HNR--KA----IESHPM-SPRITFIQGDSIDPEIVD 101 (206)
T ss_dssp ---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S---G----GGG-----TTEEEEES-SSSTHHHH
T ss_pred CC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch--hch--HH----Hhhccc-cCceEEEECCCCCHHHHH
Confidence 44 68999999999999887753 2 44579999996431 110 00 011112 269999999998865222
Q ss_pred cc------cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227 130 KI------TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKS 170 (268)
Q Consensus 130 ~~------~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~~~ 170 (268)
.. ....+|+-.+-+........|+.....++||+.+|+.|+
T Consensus 102 ~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 102 QVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp TSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred HHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 11 123234333334445677778887789999999999754
No 254
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.18 E-value=0.0033 Score=54.83 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=59.9
Q ss_pred HHHHHHHHcCCC-CCCEEEEEcCCCC--HHHHHHHHH-hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227 43 LISRMIDQINAT-PDDVFVDLGSGVG--QVVLQVAAA-TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV 118 (268)
Q Consensus 43 ~~~~ll~~l~~~-~~~~vLDiGCG~G--~~~~~la~~-~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~ 118 (268)
++.+.+..+--. -=..+||||||-= ..+-.+|+. .+..+|+-+|.+|..+..++ ..+. +...+...++
T Consensus 55 Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~r--alL~------~~~~g~t~~v 126 (267)
T PF04672_consen 55 FLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHAR--ALLA------DNPRGRTAYV 126 (267)
T ss_dssp HHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCH--HHHT------T-TTSEEEEE
T ss_pred HHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHH--hhhc------CCCCccEEEE
Confidence 444444444222 2256999999953 335556665 35667999999985333323 2111 1111248999
Q ss_pred EcCCCCCc--cc--c--cccc---eEEEEEecc-ccC---cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 119 KGDFLTEE--HR--E--KITQ---ASIVFVNNF-AFG---PTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 119 ~gD~~~l~--~~--~--~~~d---~dvv~~~~~-~~~---~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++|+.+.. +. . ...| .-.+++..+ +|. .++...+......|.||..++++
T Consensus 127 ~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~is 189 (267)
T PF04672_consen 127 QADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAIS 189 (267)
T ss_dssp E--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEE
T ss_pred eCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEE
Confidence 99999853 11 0 1111 114555544 343 35788889999999999999987
No 255
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.09 E-value=0.0035 Score=52.88 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=58.4
Q ss_pred EEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-CcccccccceEEE
Q psy17227 59 FVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEHREKITQASIV 137 (268)
Q Consensus 59 vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~~~~~~d~dvv 137 (268)
|.||||--|.+.+.+++...+.+++++|+++.+...| +++++ ..|+. .+++++.+|-.+ ++..+ ++|+|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A--~~~i~----~~~l~-~~i~~rlgdGL~~l~~~e---~~d~i 70 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKA--KENIA----KYGLE-DRIEVRLGDGLEVLKPGE---DVDTI 70 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHH--HHHHH----HTT-T-TTEEEEE-SGGGG--GGG------EE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHH--HHHHH----HcCCc-ccEEEEECCcccccCCCC---CCCEE
Confidence 6899999999999999987777899999999754443 34444 34543 589999999654 43221 24455
Q ss_pred EEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 138 FVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 138 ~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++... =..-..+.+.+....+++..+||+.
T Consensus 71 vIAGM-GG~lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 71 VIAGM-GGELIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp EEEEE--HHHHHHHHHHTGGGGTT--EEEEE
T ss_pred EEecC-CHHHHHHHHHhhHHHhccCCeEEEe
Confidence 44322 1111333445555667666677765
No 256
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.07 E-value=0.0012 Score=56.65 Aligned_cols=89 Identities=18% Similarity=0.313 Sum_probs=51.7
Q ss_pred HHHHcCCCCCC--EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH-HHHHHHHHHHHhcc---ccccEEEEEc
Q psy17227 47 MIDQINATPDD--VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGK---RHGEFRLVKG 120 (268)
Q Consensus 47 ll~~l~~~~~~--~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~-~~~~~~~~~~~~~~---~~~~i~~~~g 120 (268)
+++.++++++. +|||.=||.|.-++-+|. .|++ |+|+|-||.+..+-+ ..+++.+ .... ...+++++++
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~-~G~~-V~~lErspvia~Ll~dGL~r~~~---~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLAS-LGCK-VTGLERSPVIAALLKDGLKRAQQ---DPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHH-HT---EEEEE--HHHHHHHHHHHHHHHH---STTTHHHHHHHEEEEES
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHc-cCCe-EEEEECCHHHHHHHHHHHHHHHh---CcHhHHHHHhCCEEEcC
Confidence 77778888875 899999999999998775 6887 999999996433332 2333221 1110 1138999999
Q ss_pred CCCC-CcccccccceEEEEEecc
Q psy17227 121 DFLT-EEHREKITQASIVFVNNF 142 (268)
Q Consensus 121 D~~~-l~~~~~~~d~dvv~~~~~ 142 (268)
|..+ ++.+++ .+|||++...
T Consensus 140 d~~~~L~~~~~--s~DVVY~DPM 160 (234)
T PF04445_consen 140 DALEYLRQPDN--SFDVVYFDPM 160 (234)
T ss_dssp -CCCHCCCHSS----SEEEE--S
T ss_pred CHHHHHhhcCC--CCCEEEECCC
Confidence 9987 443333 4577877644
No 257
>KOG1709|consensus
Probab=97.05 E-value=0.004 Score=52.40 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc-ccccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE-HREKI 131 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~-~~~~~ 131 (268)
.+|.+||.||-|.|-+.-.+-..-+.. =+-|+..|+ .+++|++..-. +..||-+..|--++ ++ ++++.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~-H~IiE~hp~--V~krmr~~gw~-------ek~nViil~g~WeDvl~~L~d~~ 169 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDE-HWIIEAHPD--VLKRMRDWGWR-------EKENVIILEGRWEDVLNTLPDKH 169 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcc-eEEEecCHH--HHHHHHhcccc-------cccceEEEecchHhhhccccccC
Confidence 678899999999999976654444444 488999986 55555543221 23588888887665 22 44665
Q ss_pred cceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEeCCCCC
Q psy17227 132 TQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSSKSFCP 173 (268)
Q Consensus 132 ~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~~~~~~ 173 (268)
| |-|+-..+ -+..|.......+.|.|||+|+|-...-++.
T Consensus 170 F--DGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~ 210 (271)
T KOG1709|consen 170 F--DGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGA 210 (271)
T ss_pred c--ceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCccc
Confidence 5 55766655 4667888888999999999999986644443
No 258
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.85 E-value=0.0077 Score=54.46 Aligned_cols=100 Identities=17% Similarity=0.263 Sum_probs=63.3
Q ss_pred HHHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 47 MIDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
-+...+++||++|+=+|+| .|.+++++|+..|++ |+++|.|++ +.+ .++ +.| .-.++.....+
T Consensus 158 alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~-Via~~~~~~--K~e----~a~----~lG----Ad~~i~~~~~~- 221 (339)
T COG1064 158 ALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAE-VIAITRSEE--KLE----LAK----KLG----ADHVINSSDSD- 221 (339)
T ss_pred ehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCe-EEEEeCChH--HHH----HHH----HhC----CcEEEEcCCch-
Confidence 4456789999999888887 567788899988865 999999986 221 122 223 23344433111
Q ss_pred cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
..+.-...+|+++.. .+ ...+....+.||+||++++.
T Consensus 222 ~~~~~~~~~d~ii~t----v~--~~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 222 ALEAVKEIADAIIDT----VG--PATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred hhHHhHhhCcEEEEC----CC--hhhHHHHHHHHhcCCEEEEE
Confidence 111100115566542 12 56778888999999999986
No 259
>KOG1596|consensus
Probab=96.57 E-value=0.012 Score=50.37 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=72.0
Q ss_pred HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-
Q psy17227 49 DQINATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE- 126 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~- 126 (268)
+.+.++||.+||=||.+.|...-+.+...|.. -|++||.|+..-+- ...-++ +-.||--|.-|+....
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRd--L~nmAk--------kRtNiiPIiEDArhP~K 219 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRD--LINMAK--------KRTNIIPIIEDARHPAK 219 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHH--HHHHhh--------ccCCceeeeccCCCchh
Confidence 56678999999999999999998888876544 58999999852111 001111 2358888888988633
Q ss_pred ccccccceEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 127 HREKITQASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 127 ~~~~~~d~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
+.-...-+|+||+.. -.|+....+ .+..--||+||-|+++
T Consensus 220 YRmlVgmVDvIFaDv--aqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 220 YRMLVGMVDVIFADV--AQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeeeeeEEEEeccC--CCchhhhhhhhhhhhhhccCCeEEEE
Confidence 111112357788752 345544444 4555689999999876
No 260
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.56 E-value=0.02 Score=52.70 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=36.5
Q ss_pred HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
....+.++.+||.+|||. |.++..+|+..|..++++++.++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~ 220 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPE 220 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH
Confidence 456778899999999998 899999999988756999999975
No 261
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.33 E-value=0.16 Score=43.73 Aligned_cols=135 Identities=15% Similarity=0.054 Sum_probs=64.2
Q ss_pred HHHHhhcC-CccccccCCCCCCCCcccCcHHHHHH--HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCC
Q psy17227 13 QTYNQSVT-EPEKLNVYQPFSPFVYGETSFDLISR--MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKAD 89 (268)
Q Consensus 13 ~~y~~~~~-~~~~~~~y~~~~~~~~g~~~~~~~~~--ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~ 89 (268)
+-|+.++. -|.-...|+.... +....+.+ ++..-+.-.|.+||=||=..- .++.+|......+|+-+|+++
T Consensus 4 ~~~~~i~~~RP~~~~~~DQ~~~-----T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDe 77 (243)
T PF01861_consen 4 EKFSEIVKNRPEPDVELDQGYA-----TPETTLRRAALMAERGDLEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDE 77 (243)
T ss_dssp HHHHHHHTT-----GGGT---B------HHHHHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-H
T ss_pred HHHHHHHHcCCCCccccccccc-----cHHHHHHHHHHHHhcCcccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCH
Confidence 34455554 5777777876654 44555655 334444457889999994332 234445444556799999998
Q ss_pred ChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCc
Q psy17227 90 LPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGA 163 (268)
Q Consensus 90 ~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG 163 (268)
..+. .+++.++..|. +++.+..|+.+ +|- +-...+|+++.+...-...+.-.+......||.-|
T Consensus 78 Rll~------fI~~~a~~~gl---~i~~~~~DlR~~LP~-~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 78 RLLD------FINRVAEEEGL---PIEAVHYDLRDPLPE-ELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp HHHH------HHHHHHHHHT-----EEEE---TTS---T-TTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred HHHH------HHHHHHHHcCC---ceEEEEecccccCCH-HHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 6333 23333333443 59999999986 331 22346788998766444445556778888888755
No 262
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.30 E-value=0.0067 Score=45.43 Aligned_cols=33 Identities=33% Similarity=0.630 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCC
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKAD 89 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~ 89 (268)
+...++|||||+|-+.-.+.. -|.. -+|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~-EGy~-G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNS-EGYP-GWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHh-CCCC-cccccccc
Confidence 456799999999999866555 5776 59999875
No 263
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.24 E-value=0.041 Score=48.99 Aligned_cols=83 Identities=13% Similarity=0.065 Sum_probs=40.9
Q ss_pred CCEEEEEcCCCCHHH-HHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHh-ccccccEEEEEcCCCCCcc---ccc
Q psy17227 56 DDVFVDLGSGVGQVV-LQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWY-GKRHGEFRLVKGDFLTEEH---REK 130 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~-~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~i~~~~gD~~~l~~---~~~ 130 (268)
.-++||||||.--+- +..++.++.. ++|.|+++..+..|+ ++.++ . ++ ..+|+++...-.+.-| ...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~-fvaTdID~~sl~~A~--~nv~~----N~~L-~~~I~l~~~~~~~~i~~~i~~~ 174 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWS-FVATDIDPKSLESAR--ENVER----NPNL-ESRIELRKQKNPDNIFDGIIQP 174 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--E-EEEEES-HHHHHHHH--HHHHH----T-T--TTTEEEEE--ST-SSTTTSTT-
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCe-EEEecCCHHHHHHHH--HHHHh----cccc-ccceEEEEcCCccccchhhhcc
Confidence 457999999998763 4445667776 999999997555544 44432 2 33 3578887653221111 111
Q ss_pred ccceEEEEEeccccCc
Q psy17227 131 ITQASIVFVNNFAFGP 146 (268)
Q Consensus 131 ~~d~dvv~~~~~~~~~ 146 (268)
...+|+..||..+|..
T Consensus 175 ~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 175 NERFDFTMCNPPFYSS 190 (299)
T ss_dssp -S-EEEEEE-----SS
T ss_pred cceeeEEecCCccccC
Confidence 1357788888776643
No 264
>KOG1501|consensus
Probab=96.00 E-value=0.015 Score=53.75 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=63.6
Q ss_pred EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEE
Q psy17227 58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIV 137 (268)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv 137 (268)
.|||||.|||-++..+++ .|...|++++.-.-|..+|+ +.+...|. .++|.+|.---.+..... ...+|++
T Consensus 69 ~vLdigtGTGLLSmMAvr-agaD~vtA~EvfkPM~d~ar------kI~~kng~-SdkI~vInkrStev~vg~-~~RadI~ 139 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVR-AGADSVTACEVFKPMVDLAR------KIMHKNGM-SDKINVINKRSTEVKVGG-SSRADIA 139 (636)
T ss_pred EEEEccCCccHHHHHHHH-hcCCeEEeehhhchHHHHHH------HHHhcCCC-ccceeeeccccceeeecC-cchhhhh
Confidence 589999999999986555 56777999999988777765 22223344 358888876665544221 2235555
Q ss_pred EEecc---ccCcCHHHHHHHHHh-cCCCCcEEE
Q psy17227 138 FVNNF---AFGPTVDHALKERFQ-DLKDGARIV 166 (268)
Q Consensus 138 ~~~~~---~~~~~~~~~l~e~~r-~LkpGG~~i 166 (268)
+...+ +-.......+++.++ .++||.+.+
T Consensus 140 v~e~fdtEligeGalps~qhAh~~L~~~nc~~V 172 (636)
T KOG1501|consen 140 VREDFDTELIGEGALPSLQHAHDMLLVDNCKTV 172 (636)
T ss_pred hHhhhhhhhhccccchhHHHHHHHhcccCCeec
Confidence 54332 122334556777774 677777665
No 265
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.97 E-value=0.025 Score=50.59 Aligned_cols=89 Identities=17% Similarity=0.324 Sum_probs=56.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
.+..+++.+..+++..++|.=-|.|+.+..+....+..+++|+|.++.++..++ +.+ .....++.+++++|
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~--~~l-------~~~~~r~~~~~~~F 78 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAK--ERL-------KKFDDRFIFIHGNF 78 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHH--CCT-------CCCCTTEEEEES-G
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHH--HHH-------hhccceEEEEeccH
Confidence 356788888899999999999999999999998876667999999997444433 111 11135899999999
Q ss_pred CCCcc--cc--cccceEEEEEe
Q psy17227 123 LTEEH--RE--KITQASIVFVN 140 (268)
Q Consensus 123 ~~l~~--~~--~~~d~dvv~~~ 140 (268)
.+++- .. ....+|.|++.
T Consensus 79 ~~l~~~l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 79 SNLDEYLKELNGINKVDGILFD 100 (310)
T ss_dssp GGHHHHHHHTTTTS-EEEEEEE
T ss_pred HHHHHHHHHccCCCccCEEEEc
Confidence 88651 11 22345666654
No 266
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.92 E-value=0.018 Score=48.41 Aligned_cols=55 Identities=25% Similarity=0.433 Sum_probs=37.9
Q ss_pred cCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHH
Q psy17227 38 ETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYA 95 (268)
Q Consensus 38 ~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a 95 (268)
......+++++... ..+|+.|||-=||+|..+. +|...|.. .+|+|+++....+|
T Consensus 175 ~kP~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~-aa~~l~R~-~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 175 QKPVELIERLIKAS-TNPGDIVLDPFAGSGTTAV-AAEELGRR-YIGIEIDEEYCEIA 229 (231)
T ss_dssp -S-HHHHHHHHHHH-S-TT-EEEETT-TTTHHHH-HHHHTT-E-EEEEESSHHHHHHH
T ss_pred cCCHHHHHHHHHhh-hccceeeehhhhccChHHH-HHHHcCCe-EEEEeCCHHHHHHh
Confidence 34455667777665 5789999999999999997 46667776 99999999654444
No 267
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.74 E-value=0.041 Score=52.69 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=31.5
Q ss_pred CCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 52 NATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 52 ~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
+..++.+|+=+|||. |..++..|+..|+. |+++|.++.
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~-V~a~D~~~~ 199 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLGAI-VRAFDTRPE 199 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEeCCHH
Confidence 356899999999997 44577778888985 999999985
No 268
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.72 E-value=0.039 Score=43.54 Aligned_cols=81 Identities=12% Similarity=0.037 Sum_probs=47.1
Q ss_pred EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEeccccC-c---------CHHH
Q psy17227 81 ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFG-P---------TVDH 150 (268)
Q Consensus 81 ~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~-~---------~~~~ 150 (268)
+|+|.||.+.++.. .++++ ++.+. ..++++++.+=+++.-.-....+|+++.|.-+.+ . ....
T Consensus 1 kVyaFDIQ~~Ai~~--T~~rL----~~~~~-~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~ 73 (140)
T PF06962_consen 1 KVYAFDIQEEAIEN--TRERL----EEAGL-EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLK 73 (140)
T ss_dssp EEEEEES-HHHHHH--HHHHH----HHTT--GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHH
T ss_pred CEEEEECHHHHHHH--HHHHH----HhcCC-CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHH
Confidence 48999999863332 33333 33443 2489999998877662111123566666643322 1 1345
Q ss_pred HHHHHHhcCCCCcEEEEe
Q psy17227 151 ALKERFQDLKDGARIVSS 168 (268)
Q Consensus 151 ~l~e~~r~LkpGG~~i~~ 168 (268)
+++.+.+.|+|||++++.
T Consensus 74 Al~~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 74 ALEAALELLKPGGIITIV 91 (140)
T ss_dssp HHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhccCCEEEEE
Confidence 678888999999999875
No 269
>KOG2798|consensus
Probab=95.70 E-value=0.021 Score=50.75 Aligned_cols=110 Identities=19% Similarity=0.252 Sum_probs=60.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH-HHHHHHHH------------HH-------Hhcc-----
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRW------------MQ-------WYGK----- 110 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~-~~~~~~~~------------~~-------~~~~----- 110 (268)
.-++|--|||.|+++..+|.. |.. +-|=|.|-.|.-... +....+.. +. ....
T Consensus 151 ki~iLvPGaGlGRLa~dla~~-G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL-GFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred CceEEecCCCchhHHHHHHHh-ccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 457999999999999999874 665 788888876433332 22111100 00 0000
Q ss_pred -------ccccEEEEEcCCCCCc-ccccccceEEEEEeccc-cCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227 111 -------RHGEFRLVKGDFLTEE-HREKITQASIVFVNNFA-FGPTVDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 111 -------~~~~i~~~~gD~~~l~-~~~~~~d~dvv~~~~~~-~~~~~~~~l~e~~r~LkpGG~~i~ 167 (268)
..+..+.-.|||.+.- -.....+.|+|...-+. ...+....+.-|+.+|||||.-|=
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe
Confidence 0012333447765532 11111234455443121 123467778999999999998774
No 270
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.59 E-value=0.039 Score=47.65 Aligned_cols=78 Identities=13% Similarity=0.232 Sum_probs=46.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
+.+..+|+|||||.==++..+....+...++|+||+..++.+-. +.....+ .+.++...|...-+.. .
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~------~~l~~l~---~~~~~~v~Dl~~~~~~---~ 170 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN------AFLAVLG---VPHDARVRDLLSDPPK---E 170 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH------HHHHHTT----CEEEEEE-TTTSHTT---S
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH------HHHHhhC---CCcceeEeeeeccCCC---C
Confidence 45578999999999999887766554446999999986443322 2222222 4778888898875432 2
Q ss_pred ceEEEEEecc
Q psy17227 133 QASIVFVNNF 142 (268)
Q Consensus 133 d~dvv~~~~~ 142 (268)
..|+.++.-+
T Consensus 171 ~~DlaLllK~ 180 (251)
T PF07091_consen 171 PADLALLLKT 180 (251)
T ss_dssp EESEEEEET-
T ss_pred CcchhhHHHH
Confidence 4567766444
No 271
>KOG2198|consensus
Probab=95.48 E-value=0.12 Score=46.94 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=65.9
Q ss_pred HcCCCCCCEEEEEcCCCCHHHHHHHHHhCCc----EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 50 QINATPDDVFVDLGSGVGQVVLQVAAATGCK----ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~----~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
.|+++||++|||+..-.|+=+..+....-.. .|++=|.++. ++....+.+++ ....++.+...|+...
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~--R~~~L~~q~~~------l~~~~~~v~~~~~~~~ 221 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPK--RLNMLVHQLKR------LPSPNLLVTNHDASLF 221 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHH--HHHHHHHHHhc------cCCcceeeecccceec
Confidence 4688999999999999999998776654322 5899999874 33332232321 1124566666666555
Q ss_pred ccc---c----cccceEEEEEecccc-------CcCH-----------------HHHHHHHHhcCCCCcEEEEe
Q psy17227 126 EHR---E----KITQASIVFVNNFAF-------GPTV-----------------DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~~~---~----~~~d~dvv~~~~~~~-------~~~~-----------------~~~l~e~~r~LkpGG~~i~~ 168 (268)
|-. + ....+|=|++...|- .++. ...+..-++.||+||++|-+
T Consensus 222 p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 222 PNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred cccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 421 0 111244555543321 1111 11245666899999999844
No 272
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=95.44 E-value=0.032 Score=44.21 Aligned_cols=112 Identities=17% Similarity=0.119 Sum_probs=58.7
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 44 ~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
+...+.+..--+|. |||+|=|+|+.--++-..++...++.+|-.-. .+- ....+.-.++.||+.
T Consensus 18 L~~a~~~v~~~~G~-VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~--------~hp-------~~~P~~~~~ilGdi~ 81 (160)
T PF12692_consen 18 LNWAAAQVAGLPGP-VLELGLGNGRTYDHLREIFPDRRIYVFDRALA--------CHP-------SSTPPEEDLILGDIR 81 (160)
T ss_dssp HHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS----------S-G-------GG---GGGEEES-HH
T ss_pred HHHHHHHhcCCCCc-eEEeccCCCccHHHHHHhCCCCeEEEEeeecc--------cCC-------CCCCchHheeeccHH
Confidence 34455565555665 99999999999999888888888999998632 000 011234568999987
Q ss_pred C-CcccccccceEEEEEecc--ccCcCHHHH----HHHH-HhcCCCCcEEEEeCCCC
Q psy17227 124 T-EEHREKITQASIVFVNNF--AFGPTVDHA----LKER-FQDLKDGARIVSSKSFC 172 (268)
Q Consensus 124 ~-l~~~~~~~d~dvv~~~~~--~~~~~~~~~----l~e~-~r~LkpGG~~i~~~~~~ 172 (268)
+ +|. -..+-..+.+++.= .+.++...+ +..+ ..+|.|||.+++..++.
T Consensus 82 ~tl~~-~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 82 ETLPA-LARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp HHHHH-HHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred HHhHH-HHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 6 443 11223335555432 244444443 3333 36999999999975554
No 273
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.35 E-value=0.19 Score=42.64 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=64.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
+.+.++.||||=-|.+..++.+...+..++..|+++.+...|. ++.+ ..++ .++++..++|-.. ++..+ ..
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~--~~v~----~~~l-~~~i~vr~~dgl~-~l~~~-d~ 85 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAI--RNVK----KNNL-SERIDVRLGDGLA-VLELE-DE 85 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHH--HHHH----hcCC-cceEEEeccCCcc-ccCcc-CC
Confidence 4455699999999999999999888888999999998666553 4433 2333 3589999999843 23221 12
Q ss_pred eEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227 134 ASIVFVNNFAFGPTVDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~ 167 (268)
+|++++... -..-....+.+-.+.|+.=-++|.
T Consensus 86 ~d~ivIAGM-GG~lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 86 IDVIVIAGM-GGTLIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred cCEEEEeCC-cHHHHHHHHHHhhhhhcCcceEEE
Confidence 345544322 112233334444445543234554
No 274
>KOG1122|consensus
Probab=95.30 E-value=0.18 Score=46.68 Aligned_cols=69 Identities=10% Similarity=0.143 Sum_probs=50.1
Q ss_pred HcCCCCCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 50 QINATPDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 50 ~l~~~~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
.+..+||.+|||+.|-.|+=+-++|...+. ..|++.|.+.. ++.....++. ..| ..+.-..+.|...+|
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~--r~~~l~~n~~----rlG--v~ntiv~n~D~~ef~ 305 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNEN--RLKSLKANLH----RLG--VTNTIVSNYDGREFP 305 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchH--HHHHHHHHHH----HhC--CCceEEEccCccccc
Confidence 456789999999999999998888876543 35899999986 3433333333 234 347788888988765
No 275
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.25 E-value=0.48 Score=40.16 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCCc--EEEEEeCCCChhHHHHHH------HHHHHH---------------------
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGCK--ICWGVEKADLPAKYAEMH------TVFKRW--------------------- 104 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~~--~v~GiD~s~~~~~~a~~~------~~~~~~--------------------- 104 (268)
+..-++.|-.||.|.++--+...++.. .|+|-|++++++.+|+.+ +-++++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 345589999999999987777665543 689999999887777521 001110
Q ss_pred --------HHHhccccccEEEEEcCCCCCcc---cccccceEEEEEeccc----cCcC------HHHHHHHHHhcCCCCc
Q psy17227 105 --------MQWYGKRHGEFRLVKGDFLTEEH---REKITQASIVFVNNFA----FGPT------VDHALKERFQDLKDGA 163 (268)
Q Consensus 105 --------~~~~~~~~~~i~~~~gD~~~l~~---~~~~~d~dvv~~~~~~----~~~~------~~~~l~e~~r~LkpGG 163 (268)
....|. .....+.++|+++... .+..+..|+|+....+ .|.. ..+.|..++.+|.+++
T Consensus 130 sA~RL~~~l~~~g~-~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 130 SADRLRERLAAEGG-DEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHTTS-S--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHhcCC-CCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 011121 2357899999998432 1222345777765332 3332 3445778889995556
Q ss_pred EEEEe
Q psy17227 164 RIVSS 168 (268)
Q Consensus 164 ~~i~~ 168 (268)
+++++
T Consensus 209 VV~v~ 213 (246)
T PF11599_consen 209 VVAVS 213 (246)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66564
No 276
>KOG0822|consensus
Probab=95.20 E-value=0.074 Score=50.43 Aligned_cols=100 Identities=22% Similarity=0.256 Sum_probs=67.7
Q ss_pred CEEEEEcCCCCHHHHH---HHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227 57 DVFVDLGSGVGQVVLQ---VAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~---la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
..++=+|.|-|-+... +|.....+ ++++||-+|.++..-++ .+.+ .. ..+|+++.+|+++++-+ ..
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~----~W---~~~Vtii~~DMR~w~ap--~e 438 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFE----CW---DNRVTIISSDMRKWNAP--RE 438 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchh----hh---cCeeEEEeccccccCCc--hh
Confidence 4578899999987543 44444332 57999999985443322 1111 11 35899999999998843 34
Q ss_pred ceEEEEEecc-ccCcC--HHHHHHHHHhcCCCCcEEE
Q psy17227 133 QASIVFVNNF-AFGPT--VDHALKERFQDLKDGARIV 166 (268)
Q Consensus 133 d~dvv~~~~~-~~~~~--~~~~l~e~~r~LkpGG~~i 166 (268)
.+|+++++.. .|..+ -..+|.-+-+.|||.|+.|
T Consensus 439 q~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 439 QADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred hccchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 6788887644 34332 3567888889999999887
No 277
>KOG2793|consensus
Probab=95.14 E-value=0.25 Score=42.87 Aligned_cols=108 Identities=12% Similarity=0.007 Sum_probs=54.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc---ccccc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE---HREKI 131 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~---~~~~~ 131 (268)
....||++|+|+|-.++.+|...+.. ++--|+......+. .+........+.-...+....-+=.+.+ +..+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~-v~ltD~~~~~~~L~---~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAE-VVLTDLPKVVENLK---FNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcce-eccCCchhhHHHHH---HhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 45679999999998888777666665 67777766432322 2211110011100013333333322221 11111
Q ss_pred cceEEEEEec-cccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227 132 TQASIVFVNN-FAFGPTVDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 132 ~d~dvv~~~~-~~~~~~~~~~l~e~~r~LkpGG~~i~ 167 (268)
.+|++++.. ++........+.-+...|-.++.+.+
T Consensus 162 -~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 162 -PFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred -cccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEE
Confidence 045665544 44444566666666666766775444
No 278
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.13 E-value=0.048 Score=48.11 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=46.1
Q ss_pred EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEE
Q psy17227 58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIV 137 (268)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv 137 (268)
+|+|+-||.|++..-+. ..|...+.++|+++.+. +.+++ + .+. .++++|+.++...+...++|++
T Consensus 2 ~v~dLFsG~Gg~~~gl~-~~G~~~v~a~e~~~~a~------~~~~~---N----~~~-~~~~~Di~~~~~~~~~~~~D~l 66 (275)
T cd00315 2 RVIDLFAGIGGFRLGLE-KAGFEIVAANEIDKSAA------ETYEA---N----FPN-KLIEGDITKIDEKDFIPDIDLL 66 (275)
T ss_pred cEEEEccCcchHHHHHH-HcCCEEEEEEeCCHHHH------HHHHH---h----CCC-CCccCccccCchhhcCCCCCEE
Confidence 69999999999987654 45787789999998622 22221 1 112 2678899887633212457888
Q ss_pred EEecc
Q psy17227 138 FVNNF 142 (268)
Q Consensus 138 ~~~~~ 142 (268)
+....
T Consensus 67 ~~gpP 71 (275)
T cd00315 67 TGGFP 71 (275)
T ss_pred EeCCC
Confidence 76543
No 279
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.11 E-value=0.031 Score=50.42 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC----CCcccc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL----TEEHRE 129 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~----~l~~~~ 129 (268)
...++||+|.|.|.-+..+-..++. ..++-++.|+. +.+....+.+ ..+ .....+...|+. .+|..+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~---lrkV~~tl~~---nv~--t~~td~r~s~vt~dRl~lp~ad 184 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA---LRKVGDTLAE---NVS--TEKTDWRASDVTEDRLSLPAAD 184 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHH---HHHHHHHHHh---hcc--cccCCCCCCccchhccCCCccc
Confidence 3457999999999887543333443 24677777773 2221111111 111 112223333332 233221
Q ss_pred cccceEEEEE-eccccCcC---HHHHHHHHHhcCCCCcEEEEeCCCCCCCc
Q psy17227 130 KITQASIVFV-NNFAFGPT---VDHALKERFQDLKDGARIVSSKSFCPLNF 176 (268)
Q Consensus 130 ~~~d~dvv~~-~~~~~~~~---~~~~l~e~~r~LkpGG~~i~~~~~~~~~~ 176 (268)
.+|++++ +-+++... ....++..+..+.|||.+++.+.-.|..|
T Consensus 185 ---~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 185 ---LYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred ---eeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 2344443 33333322 23357788899999999999877666655
No 280
>PHA01634 hypothetical protein
Probab=95.10 E-value=0.057 Score=41.85 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
.+.+|+|||.+.|.-+++++. .|+.+|++++.++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l-~GAK~Vva~E~~~k 62 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLL-RGASFVVQYEKEEK 62 (156)
T ss_pred cCCEEEEecCCccchhhHHhh-cCccEEEEeccCHH
Confidence 567999999999999999876 48888999999996
No 281
>PRK11524 putative methyltransferase; Provisional
Probab=94.92 E-value=0.074 Score=47.09 Aligned_cols=51 Identities=27% Similarity=0.264 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE 96 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~ 96 (268)
.+.+++... -.+|+.|||-=||+|..+.. |.+.|.+ .+|+|++++...+|+
T Consensus 197 L~erlI~~~-S~~GD~VLDPF~GSGTT~~A-A~~lgR~-~IG~Ei~~~Y~~~a~ 247 (284)
T PRK11524 197 LLKRIILAS-SNPGDIVLDPFAGSFTTGAV-AKASGRK-FIGIEINSEYIKMGL 247 (284)
T ss_pred HHHHHHHHh-CCCCCEEEECCCCCcHHHHH-HHHcCCC-EEEEeCCHHHHHHHH
Confidence 445555544 47899999999999999974 6667877 899999997665554
No 282
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.92 E-value=0.21 Score=46.14 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=14.7
Q ss_pred CCEEEEEcCCCCHHHHHH
Q psy17227 56 DDVFVDLGSGVGQVVLQV 73 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~l 73 (268)
..+|+|+|||+|..++.+
T Consensus 64 ~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred ceeEEEecCCCCccHHHH
Confidence 568999999999777544
No 283
>PRK13699 putative methylase; Provisional
Probab=94.84 E-value=0.18 Score=43.20 Aligned_cols=52 Identities=17% Similarity=0.354 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH
Q psy17227 42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE 96 (268)
Q Consensus 42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~ 96 (268)
..+.+++... ..+|+.|||-=||+|..+.. |.+.|.. ++|+|+++....++.
T Consensus 151 ~l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~a-a~~~~r~-~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 151 TSLQPLIESF-THPNAIVLDPFAGSGSTCVA-ALQSGRR-YIGIELLEQYHRAGQ 202 (227)
T ss_pred HHHHHHHHHh-CCCCCEEEeCCCCCCHHHHH-HHHcCCC-EEEEecCHHHHHHHH
Confidence 3445566543 46899999999999999974 5567777 899999997555543
No 284
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.81 E-value=0.24 Score=44.74 Aligned_cols=103 Identities=10% Similarity=0.032 Sum_probs=57.9
Q ss_pred HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
+...+..++++||=.|||. |.++..+|+..|..+|+++|.++....+++ +.|.. .-+.....|+.++.
T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~----------~lGa~-~vi~~~~~~~~~~~ 230 (343)
T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR----------EMGAD-KLVNPQNDDLDHYK 230 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH----------HcCCc-EEecCCcccHHHHh
Confidence 4455667899999998863 445667778788866999999975222221 22321 00111111111111
Q ss_pred ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.....+|+++-. . .-...+....+.|++||+++..
T Consensus 231 --~~~g~~D~vid~-~----G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 231 --AEKGYFDVSFEV-S----GHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred --ccCCCCCEEEEC-C----CCHHHHHHHHHHhhcCCEEEEE
Confidence 111124666532 1 1124577788999999999976
No 285
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.79 E-value=0.2 Score=44.46 Aligned_cols=75 Identities=19% Similarity=0.369 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD 121 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD 121 (268)
.+.+.++.|.++++...+|.=-|.|+.+..+..+.+.. +++|+|.++.++..|+ +.+.. . .+++++++++
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~--~~l~~----~---~~r~~~v~~~ 81 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAK--ERLKE----F---DGRVTLVHGN 81 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHH--HHhhc----c---CCcEEEEeCc
Confidence 45678999999999999999999999999999887643 4999999998555544 32221 1 2589999999
Q ss_pred CCCCc
Q psy17227 122 FLTEE 126 (268)
Q Consensus 122 ~~~l~ 126 (268)
|.++.
T Consensus 82 F~~l~ 86 (314)
T COG0275 82 FANLA 86 (314)
T ss_pred HHHHH
Confidence 98865
No 286
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.76 E-value=0.25 Score=45.09 Aligned_cols=105 Identities=18% Similarity=0.185 Sum_probs=61.4
Q ss_pred HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC-CCCC
Q psy17227 48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD-FLTE 125 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD-~~~l 125 (268)
.......++.+|+=+|||+ |-++..+|+..|..+|+.+|.+++...+|+ +. .+ ...+.....+ ....
T Consensus 161 a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~--~~-------~g--~~~~~~~~~~~~~~~ 229 (350)
T COG1063 161 AERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAK--EA-------GG--ADVVVNPSEDDAGAE 229 (350)
T ss_pred hhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH--Hh-------CC--CeEeecCccccHHHH
Confidence 3444455666999999998 555677888889999999999997333332 10 11 0111111111 0000
Q ss_pred cccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 EHRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.... +-.-+|+++-..- ....+..+.+.++|||+++..
T Consensus 230 ~~~~t~g~g~D~vie~~G-----~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 230 ILELTGGRGADVVIEAVG-----SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred HHHHhCCCCCCEEEECCC-----CHHHHHHHHHHhcCCCEEEEE
Confidence 0000 0012566653211 345889999999999999876
No 287
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=94.61 E-value=0.51 Score=45.26 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHh--CC--cEEEEEeCCCChhHHHHHHH
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAAT--GC--KICWGVEKADLPAKYAEMHT 99 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~--~~--~~v~GiD~s~~~~~~a~~~~ 99 (268)
|+..+.|.-||+|++.....+.. +. ..++|-+..+.+..++.|+.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 66789999999999998655432 22 24799999998877777654
No 288
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.48 E-value=0.34 Score=43.02 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=59.1
Q ss_pred HcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Cc-
Q psy17227 50 QINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EE- 126 (268)
Q Consensus 50 ~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~- 126 (268)
...+.++.+||..||| .|..++.+|+..|.. |++++.++.. . +.++ ..|. ..+..+-.. ..
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~-V~~~~~s~~~--~----~~~~----~~g~-----~~~~~~~~~~~~~ 223 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAA-VIAVDIKEEK--L----ELAK----ELGA-----DEVLNSLDDSPKD 223 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCE-EEEEcCCHHH--H----HHHH----HhCC-----CEEEcCCCcCHHH
Confidence 3457889999999987 488889999988887 8999988741 1 2221 1222 111111111 10
Q ss_pred -c-cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 -H-REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 -~-~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
. ......+|+++-.. .....+.++.+.|++||+++..
T Consensus 224 ~~~~~~~~~~D~vid~~-----g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 224 KKAAGLGGGFDVIFDFV-----GTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHHHhcCCCceEEEECC-----CCHHHHHHHHHHhhcCCEEEEE
Confidence 0 00112356665321 1135678889999999999975
No 289
>KOG2671|consensus
Probab=94.44 E-value=0.036 Score=49.85 Aligned_cols=113 Identities=21% Similarity=0.313 Sum_probs=70.2
Q ss_pred ccccccCCCCCCCCcccCcHH-HHHH-HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH---
Q psy17227 22 PEKLNVYQPFSPFVYGETSFD-LISR-MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE--- 96 (268)
Q Consensus 22 ~~~~~~y~~~~~~~~g~~~~~-~~~~-ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~--- 96 (268)
.+.+..|+--....-|.++.+ .+.- +.++.-.+||+.|+|-=-|||++....| ++|+- |+|-||+-.++...+
T Consensus 173 R~li~~y~LK~R~yiGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa-~FGa~-viGtDIDyr~vragrg~~ 250 (421)
T KOG2671|consen 173 RELIEKYDLKKRCYIGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAA-HFGAY-VIGTDIDYRTVRAGRGED 250 (421)
T ss_pred HhHhhhcccccccccCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehh-hhcce-eeccccchheeecccCCC
Confidence 344444533332233444332 2333 3345578999999999999999998654 57887 999999976555221
Q ss_pred --HHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEEEec
Q psy17227 97 --MHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNN 141 (268)
Q Consensus 97 --~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~~~~ 141 (268)
.+.++++ .|....-+.+..+|+.+.|.-.+ -.+|+|++..
T Consensus 251 ~si~aNFkQ----Yg~~~~fldvl~~D~sn~~~rsn-~~fDaIvcDP 292 (421)
T KOG2671|consen 251 ESIKANFKQ----YGSSSQFLDVLTADFSNPPLRSN-LKFDAIVCDP 292 (421)
T ss_pred cchhHhHHH----hCCcchhhheeeecccCcchhhc-ceeeEEEeCC
Confidence 2334433 34333357889999998876544 2456777653
No 290
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=94.38 E-value=0.14 Score=47.32 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHH-hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAA-TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.+-+|||.=||+|-=++..+++ .+..+|+.-|+|+.++.+.+ ++++ .++.....+++.+.|+..+=. .....
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~--~N~~----~N~~~~~~~~v~~~DAn~ll~-~~~~~ 121 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIK--RNLE----LNGLEDERIEVSNMDANVLLY-SRQER 121 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHH--HHHH----HCT-SGCCEEEEES-HHHHHC-HSTT-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHH--HhHh----hccccCceEEEehhhHHHHhh-hcccc
Confidence 4568999999999999999998 45668999999997554433 3332 344443369999999876432 12235
Q ss_pred eEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|+|=+..+ -.+...+....+.+|.||.+.+|
T Consensus 122 fD~IDlDPf---GSp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 122 FDVIDLDPF---GSPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp EEEEEE--S---S--HHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEeCCC---CCccHhHHHHHHHhhcCCEEEEe
Confidence 678877655 45677888999999999999977
No 291
>KOG2651|consensus
Probab=94.36 E-value=0.17 Score=46.25 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=35.5
Q ss_pred HHHHHc-CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCCh
Q psy17227 46 RMIDQI-NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLP 91 (268)
Q Consensus 46 ~ll~~l-~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~ 91 (268)
.++..+ ...+-+.|+|+|.|.|.++..++-.+|.. |.|||-|...
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~ls-V~aIegsq~~ 188 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLS-VKAIEGSQRL 188 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCce-EEEeccchHH
Confidence 344444 33455789999999999999999888887 9999999653
No 292
>KOG3201|consensus
Probab=93.82 E-value=0.031 Score=45.09 Aligned_cols=118 Identities=10% Similarity=0.133 Sum_probs=64.9
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHH-HHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQV-VLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~-~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
.++..-+.-.|.+||++|-|.=.+ ++.+|...+...|.-.|-++..++--+ +-... +.......+....-+...
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~--ki~~~---n~~s~~tsc~vlrw~~~~ 94 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVE--KIRNS---NMASSLTSCCVLRWLIWG 94 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHH--HHHhc---ccccccceehhhHHHHhh
Confidence 344544555678999999996555 555566666667888999875333222 11110 000112244444444432
Q ss_pred CcccccccceEEEEEecc-ccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EEHREKITQASIVFVNNF-AFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~~~~~~~d~dvv~~~~~-~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
-........+|+|.+... +|..-....+.-|.+.|+|.|+.++.
T Consensus 95 aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 95 AQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred hHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEe
Confidence 221111123566666544 45444555567778999999986653
No 293
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=93.80 E-value=0.14 Score=45.67 Aligned_cols=159 Identities=15% Similarity=0.178 Sum_probs=86.7
Q ss_pred HHHHHHhhcCCccccccC-CCCCCC---CcccCcHHHHHHHHHHcCCC----------CCCEEEEEcCCCCHHHHHHHHH
Q psy17227 11 IQQTYNQSVTEPEKLNVY-QPFSPF---VYGETSFDLISRMIDQINAT----------PDDVFVDLGSGVGQVVLQVAAA 76 (268)
Q Consensus 11 ~~~~y~~~~~~~~~~~~y-~~~~~~---~~g~~~~~~~~~ll~~l~~~----------~~~~vLDiGCG~G~~~~~la~~ 76 (268)
-.+.|..+-.+++.+.-| ..|++. -|.+++ ..+..++..+... +..+||-||-|.|.=...+|..
T Consensus 29 YnRDf~~AF~~~~~L~AYA~RWSPsRAL~Yaslf-~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~ 107 (315)
T PF11312_consen 29 YNRDFAAAFGDEEKLEAYAARWSPSRALAYASLF-ASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAA 107 (315)
T ss_pred hcchHHHHhCChhhhhhheeccCHHHHHHHHHHH-HHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHH
Confidence 334455566788888888 666652 222221 1222333333222 2358999999998766666655
Q ss_pred hC-------C-------------cEEEEEeCCCChhHHHHHHHHHHHH------H-----HHhccccccEEEEEcCCCCC
Q psy17227 77 TG-------C-------------KICWGVEKADLPAKYAEMHTVFKRW------M-----QWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 77 ~~-------~-------------~~v~GiD~s~~~~~~a~~~~~~~~~------~-----~~~~~~~~~i~~~~gD~~~l 125 (268)
+. . -.++.||+.+-...+.+....++.. . .......-+++|.+.|+..+
T Consensus 108 ~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~~~~~~~~~~~~F~~~DvL~~ 187 (315)
T PF11312_consen 108 FRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANWPLIEPDRFNVSFTQQDVLSL 187 (315)
T ss_pred HhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccccccCCccceeeeEEecccccC
Confidence 50 0 1589999998644444422222210 0 00001112789999999887
Q ss_pred ccccc--c-c--ceEEEE---EeccccCc---CHHHHHHHHHhcCCCCcEEEEeCC
Q psy17227 126 EHREK--I-T--QASIVF---VNNFAFGP---TVDHALKERFQDLKDGARIVSSKS 170 (268)
Q Consensus 126 ~~~~~--~-~--d~dvv~---~~~~~~~~---~~~~~l~e~~r~LkpGG~~i~~~~ 170 (268)
..++- . . ..++|. .-+-+|.. +-.+.|..+-..++||..+.+.|.
T Consensus 188 ~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 188 SEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 64321 1 0 122332 11113333 344557777889999999998743
No 294
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.76 E-value=0.52 Score=44.03 Aligned_cols=98 Identities=18% Similarity=0.243 Sum_probs=58.8
Q ss_pred HHHHHHHHcCC-CCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227 43 LISRMIDQINA-TPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG 120 (268)
Q Consensus 43 ~~~~ll~~l~~-~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g 120 (268)
.+..++...++ -+|++|+=+|||+ |..+...++..|+. |+.+|.++. +...+ . ..|. +.+
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~-ViV~d~d~~--R~~~A----~----~~G~-----~~~-- 249 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGAR-VIVTEVDPI--CALQA----A----MEGY-----EVM-- 249 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEECChh--hHHHH----H----hcCC-----EEc--
Confidence 34556666554 5899999999997 55555666778885 899999985 22211 1 1221 111
Q ss_pred CCCCCcccccccceEEEEEeccccCcCHHHHHHH-HHhcCCCCcEEEEe
Q psy17227 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKE-RFQDLKDGARIVSS 168 (268)
Q Consensus 121 D~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e-~~r~LkpGG~~i~~ 168 (268)
+.. +....+|+|+.. ......+.. .++.+|+||+++..
T Consensus 250 ~~~-----e~v~~aDVVI~a-----tG~~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 250 TME-----EAVKEGDIFVTT-----TGNKDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred cHH-----HHHcCCCEEEEC-----CCCHHHHHHHHHhcCCCCcEEEEe
Confidence 111 111245677642 122345554 48999999999865
No 295
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.73 E-value=0.78 Score=41.25 Aligned_cols=95 Identities=12% Similarity=0.074 Sum_probs=56.5
Q ss_pred HHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 48 IDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
+...++++|++||=.||| .|.++..+|+..|.. +++++.++. +.+. ++ ..|.. . ++ |..+..
T Consensus 158 ~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~-vi~~~~~~~--~~~~----a~----~~Ga~--~--vi--~~~~~~ 220 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGFGGSAHLTAQVALAQGAT-VHVMTRGAA--ARRL----AL----ALGAA--S--AG--GAYDTP 220 (329)
T ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCe-EEEEeCChH--HHHH----HH----HhCCc--e--ec--cccccC
Confidence 345678899999999976 344567778888886 899999875 2211 11 23321 1 11 111111
Q ss_pred ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.. .+|+++.... ....+....+.|++||++++.
T Consensus 221 --~~--~~d~~i~~~~-----~~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 221 --PE--PLDAAILFAP-----AGGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred --cc--cceEEEECCC-----cHHHHHHHHHhhCCCcEEEEE
Confidence 11 1344432111 124688888999999999876
No 296
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=93.60 E-value=0.37 Score=42.12 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=49.6
Q ss_pred HHHHHHHHcCC-CCCCEEEEEcCCCCHHHHHHHHHhC-----CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEE
Q psy17227 43 LISRMIDQINA-TPDDVFVDLGSGVGQVVLQVAAATG-----CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFR 116 (268)
Q Consensus 43 ~~~~ll~~l~~-~~~~~vLDiGCG~G~~~~~la~~~~-----~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~ 116 (268)
++-..++..++ .+...++|.|||.|.++.+++...+ ...++-||-.....+. .+.++.... ...++
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~-------D~~~~~~~~-~~~~~ 76 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKA-------DNKIRKDES-EPKFE 76 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccc-------hhhhhccCC-CCceE
Confidence 44455555554 5778899999999999999998773 3358999986542221 111111110 13577
Q ss_pred EEEcCCCCCcc
Q psy17227 117 LVKGDFLTEEH 127 (268)
Q Consensus 117 ~~~gD~~~l~~ 127 (268)
=+..|+.++.+
T Consensus 77 R~riDI~dl~l 87 (259)
T PF05206_consen 77 RLRIDIKDLDL 87 (259)
T ss_pred EEEEEeeccch
Confidence 77788888753
No 297
>KOG1562|consensus
Probab=93.59 E-value=0.32 Score=43.10 Aligned_cols=110 Identities=14% Similarity=0.159 Sum_probs=69.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREK 130 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~ 130 (268)
+...++||=||-|.|++.+..+++--...+.-+|++...+.+++ +.+...+ .|-..+++.+.-||-..+- ...+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk--~y~p~la--~gy~~~~v~l~iGDG~~fl~~~~~~ 194 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSK--QYLPTLA--CGYEGKKVKLLIGDGFLFLEDLKEN 194 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHH--HHhHHHh--cccCCCceEEEeccHHHHHHHhccC
Confidence 44567899999999999998887633445788888886455444 2333211 2334468999999976532 1133
Q ss_pred ccceEEEEEecc-ccCcC----HHHHHHHHHhcCCCCcEEEEe
Q psy17227 131 ITQASIVFVNNF-AFGPT----VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 131 ~~d~dvv~~~~~-~~~~~----~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+|||+.... .-.|. ....+.-+.+.|||||.+++.
T Consensus 195 --~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 195 --PFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred --CceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 3566776543 11222 122345566899999999865
No 298
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.36 E-value=1.2 Score=38.61 Aligned_cols=109 Identities=16% Similarity=0.106 Sum_probs=64.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCC----cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-Ccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGC----KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEH 127 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~----~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~ 127 (268)
+..+.+++|+|+|+-.=++.+...+.. .+.+-||+|.. +-+ ..++...++.. .-.+.-++||++. +..
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~---iL~--~ta~ai~~~y~--~l~v~~l~~~~~~~La~ 148 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSAS---ILR--ATATAILREYP--GLEVNALCGDYELALAE 148 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHH---HHH--HHHHHHHHhCC--CCeEeehhhhHHHHHhc
Confidence 344788999999999888777654433 35799999974 211 11222111221 1257778899863 111
Q ss_pred cccccceEEEEEeccc--cCcCHHHH-HHHHHhcCCCCcEEEEe
Q psy17227 128 REKITQASIVFVNNFA--FGPTVDHA-LKERFQDLKDGARIVSS 168 (268)
Q Consensus 128 ~~~~~d~dvv~~~~~~--~~~~~~~~-l~e~~r~LkpGG~~i~~ 168 (268)
..+...--.+|..+.+ +.|+.... +..+..+|.||-.|.+-
T Consensus 149 ~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 149 LPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred ccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 1122222245555553 55665555 45666799999888764
No 299
>PTZ00357 methyltransferase; Provisional
Probab=93.34 E-value=0.36 Score=47.47 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=63.0
Q ss_pred EEEEEcCCCCHHHHH---HHHHhCCc-EEEEEeCCCChhHHHHHHH-HHHHHHHHhccccccEEEEEcCCCCCcccc---
Q psy17227 58 VFVDLGSGVGQVVLQ---VAAATGCK-ICWGVEKADLPAKYAEMHT-VFKRWMQWYGKRHGEFRLVKGDFLTEEHRE--- 129 (268)
Q Consensus 58 ~vLDiGCG~G~~~~~---la~~~~~~-~v~GiD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~--- 129 (268)
.|+=+|+|-|-+... +++..+.. ++++||-++..+.+...+. +.+.+........+.|+++..|++.+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999988544 44445554 6899999976433333221 111111000000246999999999975332
Q ss_pred ------cccceEEEEEecc-ccCcC--HHHHHHHHHhcCCC----CcE
Q psy17227 130 ------KITQASIVFVNNF-AFGPT--VDHALKERFQDLKD----GAR 164 (268)
Q Consensus 130 ------~~~d~dvv~~~~~-~~~~~--~~~~l~e~~r~Lkp----GG~ 164 (268)
....+|+++++.+ .|..+ --+.|.-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 1125889988755 34433 23566666677765 665
No 300
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.23 E-value=0.72 Score=39.98 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=33.0
Q ss_pred HHHHHHcCCC-CCCEEEEEcCCCCHHHHHHHHHhCCc--------EEEEEeCCCChhHH
Q psy17227 45 SRMIDQINAT-PDDVFVDLGSGVGQVVLQVAAATGCK--------ICWGVEKADLPAKY 94 (268)
Q Consensus 45 ~~ll~~l~~~-~~~~vLDiGCG~G~~~~~la~~~~~~--------~v~GiD~s~~~~~~ 94 (268)
...++.++-. ..-+|+++|.|+|.++..+....... +++-||.||.+...
T Consensus 7 ~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~ 65 (252)
T PF02636_consen 7 AQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRER 65 (252)
T ss_dssp HHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHH
T ss_pred HHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHH
Confidence 3455555422 23689999999999999988765432 68999999974443
No 301
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.12 E-value=0.52 Score=35.27 Aligned_cols=88 Identities=15% Similarity=0.167 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHh--CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc--ccccceEEEEE
Q psy17227 64 SGVGQVVLQVAAAT--GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR--EKITQASIVFV 139 (268)
Q Consensus 64 CG~G~~~~~la~~~--~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~--~~~~d~dvv~~ 139 (268)
||.|.++..+++.. +...++.+|.++. ... .++ ...+.++.||..+...- .+..+++.+++
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~--~~~----~~~---------~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPE--RVE----ELR---------EEGVEVIYGDATDPEVLERAGIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHH--HHH----HHH---------HTTSEEEES-TTSHHHHHHTTGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcH--HHH----HHH---------hcccccccccchhhhHHhhcCccccCEEEE
Confidence 77888988888753 3435999999985 111 111 12477999999986521 23345666665
Q ss_pred eccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 140 NNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 140 ~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.. -.+.....+....|.+-|...+++.
T Consensus 69 ~~--~~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 69 LT--DDDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp ES--SSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred cc--CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 31 1222333455666888888888864
No 302
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.97 E-value=0.36 Score=41.92 Aligned_cols=122 Identities=18% Similarity=0.241 Sum_probs=61.3
Q ss_pred HHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHH---hC--CcEEEEEeCCCChhH--------------------HHH
Q psy17227 44 ISRMIDQIN--ATPDDVFVDLGSGVGQVVLQVAAA---TG--CKICWGVEKADLPAK--------------------YAE 96 (268)
Q Consensus 44 ~~~ll~~l~--~~~~~~vLDiGCG~G~~~~~la~~---~~--~~~v~GiD~s~~~~~--------------------~a~ 96 (268)
+..+++..- --||+ |++.||=.|+.++.++.. ++ .+++++.|-=+.+-. ++.
T Consensus 62 L~~~~~~v~~~~vpGd-ivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~ 140 (248)
T PF05711_consen 62 LYQAVEQVLAEDVPGD-IVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAV 140 (248)
T ss_dssp HHHHHHHCCHTTS-SE-EEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTH
T ss_pred HHHHHHHHHhcCCCeE-EEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhccccccc
Confidence 344555542 23564 999999999987655432 22 346899986331100 000
Q ss_pred HHHHHHHHHHHhccccccEEEEEcCCCC-CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 97 MHTVFKRWMQWYGKRHGEFRLVKGDFLT-EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
..+..++.....|...++++++.|.+.+ +|- .+...+.++.+..=++ .....+|..++-.|.|||.+++-
T Consensus 141 s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~-~p~~~IAll~lD~DlY-esT~~aLe~lyprl~~GGiIi~D 211 (248)
T PF05711_consen 141 SLEEVRENFARYGLLDDNVRFVKGWFPDTLPD-APIERIALLHLDCDLY-ESTKDALEFLYPRLSPGGIIIFD 211 (248)
T ss_dssp HHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC--TT--EEEEEE---SH-HHHHHHHHHHGGGEEEEEEEEES
T ss_pred CHHHHHHHHHHcCCCcccEEEECCcchhhhcc-CCCccEEEEEEeccch-HHHHHHHHHHHhhcCCCeEEEEe
Confidence 1122222122233334589999999965 441 1112232333322112 23566788899899999999994
No 303
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.79 E-value=0.71 Score=41.81 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=54.1
Q ss_pred CCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCC-ChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227 52 NATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKAD-LPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE 129 (268)
Q Consensus 52 ~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~-~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~ 129 (268)
+..+|++||=+|||. |.++..+|+..|+. |++++.++ ...+.+ .++ ..|.. .+.....|..+ . .
T Consensus 169 ~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~-vi~~~~~~~~~~~~~----~~~----~~Ga~--~v~~~~~~~~~--~-~ 234 (355)
T cd08230 169 PTWNPRRALVLGAGPIGLLAALLLRLRGFE-VYVLNRRDPPDPKAD----IVE----ELGAT--YVNSSKTPVAE--V-K 234 (355)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCHHHHH----HHH----HcCCE--EecCCccchhh--h-h
Confidence 467899999999875 55677788888885 99999742 101211 111 22321 11111111111 0 0
Q ss_pred cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 130 KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 130 ~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
....+|+++-..- -...+.+..+.|++||++++.
T Consensus 235 ~~~~~d~vid~~g-----~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 235 LVGEFDLIIEATG-----VPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred hcCCCCEEEECcC-----CHHHHHHHHHHccCCcEEEEE
Confidence 1123455553211 123677888999999999875
No 304
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.79 E-value=0.86 Score=41.15 Aligned_cols=95 Identities=15% Similarity=0.062 Sum_probs=53.4
Q ss_pred cCCCCCCEEEEEcCCCCH-HHHHHHHH-hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc
Q psy17227 51 INATPDDVFVDLGSGVGQ-VVLQVAAA-TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR 128 (268)
Q Consensus 51 l~~~~~~~vLDiGCG~G~-~~~~la~~-~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~ 128 (268)
+.+++|++||=+|||.=+ ++..+|+. .|..+|+++|.++. +++.+ + ..+ ....+ .+ +.
T Consensus 159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~--k~~~a----~----~~~----~~~~~-~~---~~-- 218 (341)
T cd08237 159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQE--KLDLF----S----FAD----ETYLI-DD---IP-- 218 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHh--HHHHH----h----hcC----ceeeh-hh---hh--
Confidence 456789999999986533 34455665 45555999999875 22211 1 111 11111 11 11
Q ss_pred ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 129 EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 129 ~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.. .+|+++= .+ -.+.....+....+.|++||++++.
T Consensus 219 ~~~-g~d~viD-~~-G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 219 EDL-AVDHAFE-CV-GGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred hcc-CCcEEEE-CC-CCCccHHHHHHHHHhCcCCcEEEEE
Confidence 111 2456652 22 1111345788889999999999875
No 305
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.76 E-value=0.42 Score=47.42 Aligned_cols=112 Identities=21% Similarity=0.199 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHh-------C-----CcEEEEEeCCCCh-hHHHHHHH-------HHHHHHHH-----hc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAAT-------G-----CKICWGVEKADLP-AKYAEMHT-------VFKRWMQW-----YG 109 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~-------~-----~~~v~GiD~s~~~-~~~a~~~~-------~~~~~~~~-----~~ 109 (268)
+.-+|+|+|=|+|.......+.+ + .-+++++|..|-. ..++++.. .+++.... .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999776665444 1 1258999987631 12222211 11111111 01
Q ss_pred c-----ccc--cEEEEEcCCCC-CcccccccceEEEEEeccc--cCcCH--HHHHHHHHhcCCCCcEEEEe
Q psy17227 110 K-----RHG--EFRLVKGDFLT-EEHREKITQASIVFVNNFA--FGPTV--DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 110 ~-----~~~--~i~~~~gD~~~-l~~~~~~~d~dvv~~~~~~--~~~~~--~~~l~e~~r~LkpGG~~i~~ 168 (268)
. ..+ .+++..||+.+ ++--. +.+|+++...+. ..|++ ...|+.+.|.++|||+++++
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~--~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLD--ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhcc--ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 1 011 45678888865 22111 357889988763 44553 45689999999999999965
No 306
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.70 E-value=1.1 Score=40.71 Aligned_cols=102 Identities=18% Similarity=0.157 Sum_probs=58.3
Q ss_pred HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
....++.+|++||=.|||. |.++..+|+..|..+|+++|.++....++ + ..|. . .++...-.+..
T Consensus 169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~------~----~~Ga---~-~~i~~~~~~~~ 234 (358)
T TIGR03451 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA------R----EFGA---T-HTVNSSGTDPV 234 (358)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH------H----HcCC---c-eEEcCCCcCHH
Confidence 3445788999999999864 55677788888886699999987522221 1 1221 1 12211111110
Q ss_pred --ccc--cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 --HRE--KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 --~~~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
... +...+|+++- .. - -...+...++.+++||+++..
T Consensus 235 ~~i~~~~~~~g~d~vid-~~-g---~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 235 EAIRALTGGFGADVVID-AV-G---RPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred HHHHHHhCCCCCCEEEE-CC-C---CHHHHHHHHHHhccCCEEEEE
Confidence 000 1113566653 22 1 124567778899999999975
No 307
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.65 E-value=0.48 Score=43.23 Aligned_cols=110 Identities=10% Similarity=0.086 Sum_probs=76.7
Q ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
+++.++-.-..+|||-=||+|-=++.+|...+..+|+-=|+||.+..+.+ ++++. + ...+...++.|+..+=
T Consensus 44 ~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik--~Nv~~----N--~~~~~~v~n~DAN~lm 115 (380)
T COG1867 44 VLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIK--ENVRL----N--SGEDAEVINKDANALL 115 (380)
T ss_pred HHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHH--HHHHh----c--CcccceeecchHHHHH
Confidence 44444322267899999999999999999998877999999998666644 44442 1 1236667777876543
Q ss_pred ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.. +.+.+|+|=+..+ -.+...+...++..|.||.+.+|
T Consensus 116 ~~-~~~~fd~IDiDPF---GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 116 HE-LHRAFDVIDIDPF---GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred Hh-cCCCccEEecCCC---CCCchHHHHHHHHhhcCCEEEEE
Confidence 32 2245677766644 34566777888888999999877
No 308
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.63 E-value=0.89 Score=41.50 Aligned_cols=103 Identities=18% Similarity=0.157 Sum_probs=58.5
Q ss_pred HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
+....+++++++||=.|+|. |.++..+|+..|..+|+++|.++....++ + ..|. -.++..+-.++
T Consensus 183 ~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a------~----~~Ga----~~~i~~~~~~~ 248 (371)
T cd08281 183 VVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALA------R----ELGA----TATVNAGDPNA 248 (371)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH------H----HcCC----ceEeCCCchhH
Confidence 34556788999999999864 55567777888885599999987522221 1 1221 11221111111
Q ss_pred c--cccc-ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 E--HREK-ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~--~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
. .... ...+|+++-. . .-...+....+.|++||+++..
T Consensus 249 ~~~i~~~~~~g~d~vid~-~----G~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 249 VEQVRELTGGGVDYAFEM-A----GSVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred HHHHHHHhCCCCCEEEEC-C----CChHHHHHHHHHHhcCCEEEEE
Confidence 0 0000 0124566531 1 1134677788999999999875
No 309
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.59 E-value=0.94 Score=40.46 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=57.8
Q ss_pred HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC---CCC
Q psy17227 49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD---FLT 124 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD---~~~ 124 (268)
..++..++.+||-.|||. |..+..+|+..|..++++++.++....+ ++ ..+. . .++..+ ..+
T Consensus 159 ~~~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~------~~----~~g~--~--~vi~~~~~~~~~ 224 (339)
T cd08232 159 NRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAV------AR----AMGA--D--ETVNLARDPLAA 224 (339)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH------HH----HcCC--C--EEEcCCchhhhh
Confidence 334444889999999886 7778888888888558999888742221 11 1221 1 122111 111
Q ss_pred CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+. .....+|+++-... ....+.+.++.|+++|+++..
T Consensus 225 ~~--~~~~~vd~vld~~g-----~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 225 YA--ADKGDFDVVFEASG-----APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred hh--ccCCCccEEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 11 11112566654211 134578889999999999975
No 310
>KOG0024|consensus
Probab=92.39 E-value=0.24 Score=44.44 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=64.4
Q ss_pred HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
.+...+.++|.+||=+|+|+ |-.+...|+..|+.+|+.+|+++..+.+|+ ..|.+ .+......- ..
T Consensus 161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak----------~~Ga~--~~~~~~~~~-~~ 227 (354)
T KOG0024|consen 161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAK----------KFGAT--VTDPSSHKS-SP 227 (354)
T ss_pred hhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHH----------HhCCe--EEeeccccc-cH
Confidence 45667899999999999997 555666778899999999999997444433 13321 222222111 11
Q ss_pred cc----cccc---cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 EH----REKI---TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~~----~~~~---~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+. -... ..+|+.|-. .-....++-....+|+||.++..
T Consensus 228 ~~~~~~v~~~~g~~~~d~~~dC-----sG~~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 228 QELAELVEKALGKKQPDVTFDC-----SGAEVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred HHHHHHHHhhccccCCCeEEEc-----cCchHHHHHHHHHhccCCEEEEe
Confidence 10 0000 114444432 23456677778899999998776
No 311
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=92.29 E-value=1.7 Score=39.23 Aligned_cols=103 Identities=21% Similarity=0.335 Sum_probs=64.4
Q ss_pred HHHHcCCCCCCEEEEEc--CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 47 MIDQINATPDDVFVDLG--SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiG--CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
+....++++|++||=.| .|.|.+++++|+..|.. ++++.-+++ ..+ +++..|.. .-+.+...|+.+
T Consensus 134 l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~-~v~~~~s~~--k~~--------~~~~lGAd-~vi~y~~~~~~~ 201 (326)
T COG0604 134 LFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGAT-VVAVVSSSE--KLE--------LLKELGAD-HVINYREEDFVE 201 (326)
T ss_pred HHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCc-EEEEecCHH--HHH--------HHHhcCCC-EEEcCCcccHHH
Confidence 44456789999999998 57889999999999874 677777763 111 12234421 123333344322
Q ss_pred C--cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 E--EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l--~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
- ..... ..+|+|+-. --...+.+..+.|++||++++.
T Consensus 202 ~v~~~t~g-~gvDvv~D~------vG~~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 202 QVRELTGG-KGVDVVLDT------VGGDTFAASLAALAPGGRLVSI 240 (326)
T ss_pred HHHHHcCC-CCceEEEEC------CCHHHHHHHHHHhccCCEEEEE
Confidence 1 01111 236777742 2256677889999999999986
No 312
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=92.03 E-value=1.1 Score=40.53 Aligned_cols=103 Identities=18% Similarity=0.239 Sum_probs=64.6
Q ss_pred HHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC--
Q psy17227 45 SRMIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD-- 121 (268)
Q Consensus 45 ~~ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD-- 121 (268)
-.+++.++.++|++|.=+|||. |-.++.-|+..|+.++++||+++. +++.+ + +.| -.++++..
T Consensus 175 Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~--Kl~~A----~----~fG----AT~~vn~~~~ 240 (366)
T COG1062 175 GAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE--KLELA----K----KFG----ATHFVNPKEV 240 (366)
T ss_pred HHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH--HHHHH----H----hcC----Cceeecchhh
Confidence 3578889999999999999985 556777788889999999999986 33221 1 233 33344332
Q ss_pred --CCCC--cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 122 --FLTE--EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 122 --~~~l--~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+-+. ...+. -+|..| +. ......++..+..+.++|..++.
T Consensus 241 ~~vv~~i~~~T~g--G~d~~~-e~----~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 241 DDVVEAIVELTDG--GADYAF-EC----VGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred hhHHHHHHHhcCC--CCCEEE-Ec----cCCHHHHHHHHHHHhcCCeEEEE
Confidence 1110 01111 123332 11 12234777888888889998876
No 313
>KOG1099|consensus
Probab=91.84 E-value=0.5 Score=40.46 Aligned_cols=93 Identities=18% Similarity=0.116 Sum_probs=61.4
Q ss_pred CEEEEEcCCCCHHHHHHHHHhCC------c---EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227 57 DVFVDLGSGVGQVVLQVAAATGC------K---ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH 127 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~~~------~---~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~ 127 (268)
.+++|+..-.|.-+..++++... . ++++||+.+- . ....|.-+++|+.+...
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-a------------------PI~GV~qlq~DIT~~st 103 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-A------------------PIEGVIQLQGDITSAST 103 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-C------------------ccCceEEeecccCCHhH
Confidence 57999999999999888876422 1 2899999982 0 12467788999988542
Q ss_pred ccc------ccceEEEEEecc-----ccCcC-HHH------HHHHHHhcCCCCcEEEEe
Q psy17227 128 REK------ITQASIVFVNNF-----AFGPT-VDH------ALKERFQDLKDGARIVSS 168 (268)
Q Consensus 128 ~~~------~~d~dvv~~~~~-----~~~~~-~~~------~l~e~~r~LkpGG~~i~~ 168 (268)
.+. -..+|+|++... +|.-| ..+ +|.-...+|||||.|+.-
T Consensus 104 ae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 104 AEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 111 135788888653 45433 111 233334799999999863
No 314
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.50 E-value=1.3 Score=38.78 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=56.4
Q ss_pred HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
+......++++||=+|+|. |.++..+|+..|..+|+.+|.++.-..++ + ..|.. .++. ..+..
T Consensus 113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a------~----~~Ga~----~~i~--~~~~~ 176 (280)
T TIGR03366 113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELA------L----SFGAT----ALAE--PEVLA 176 (280)
T ss_pred HHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH------H----HcCCc----EecC--chhhH
Confidence 4455667899999998853 44566677778887688998887422111 1 22221 1111 11110
Q ss_pred --ccc--cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 --HRE--KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 --~~~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
... ....+|+++-. . .-...+....+.|+|||+++..
T Consensus 177 ~~~~~~~~~~g~d~vid~-~----G~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 177 ERQGGLQNGRGVDVALEF-S----GATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred HHHHHHhCCCCCCEEEEC-C----CChHHHHHHHHHhcCCCEEEEe
Confidence 000 01135565531 1 1234677888999999999975
No 315
>KOG0022|consensus
Probab=91.44 E-value=0.43 Score=42.76 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=62.4
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHH-HHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc-CCC
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQV-VLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG-DFL 123 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~-~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g-D~~ 123 (268)
..++..+++||+++.=.|+|.=++ .+.-|+..|+.+++|||++++ +.++++ ..|. -+|++- |..
T Consensus 183 Aa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~--Kf~~ak--------~fGa----Te~iNp~d~~ 248 (375)
T KOG0022|consen 183 AAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPD--KFEKAK--------EFGA----TEFINPKDLK 248 (375)
T ss_pred hhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHH--HHHHHH--------hcCc----ceecChhhcc
Confidence 356777899999999999987554 555577789999999999986 443321 2332 233332 333
Q ss_pred CCcccccc-----cceEEEEEeccccCcCHHHHHHHHHhcCCCC-cEEEEe
Q psy17227 124 TEEHREKI-----TQASIVFVNNFAFGPTVDHALKERFQDLKDG-ARIVSS 168 (268)
Q Consensus 124 ~l~~~~~~-----~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpG-G~~i~~ 168 (268)
+ |..+-. ..+|.-| + .....+.+++.+...+.| |.-++.
T Consensus 249 ~-~i~evi~EmTdgGvDysf-E----c~G~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 249 K-PIQEVIIEMTDGGVDYSF-E----CIGNVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred c-cHHHHHHHHhcCCceEEE-E----ecCCHHHHHHHHHHhhcCCCeEEEE
Confidence 3 221110 1122222 1 123457788888888888 776654
No 316
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=91.26 E-value=2.5 Score=37.48 Aligned_cols=99 Identities=21% Similarity=0.332 Sum_probs=58.1
Q ss_pred HHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227 49 DQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH 127 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~ 127 (268)
....+.++.+||-+||| .|..+..+|+..|.. +++++.++. ..+ .++ ..|. . .++..+-....-
T Consensus 156 ~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~-v~~~~~~~~--~~~----~~~----~~g~---~-~~~~~~~~~~~~ 220 (330)
T cd08245 156 RDAGPRPGERVAVLGIGGLGHLAVQYARAMGFE-TVAITRSPD--KRE----LAR----KLGA---D-EVVDSGAELDEQ 220 (330)
T ss_pred HhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHH--HHH----HHH----HhCC---c-EEeccCCcchHH
Confidence 44678889999999997 788888888888886 899988874 211 111 1121 1 111111000000
Q ss_pred cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 128 REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 128 ~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
. ....+|+++.. . - -...+..+.+.|+++|+++..
T Consensus 221 ~-~~~~~d~vi~~-~-~---~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 221 A-AAGGADVILVT-V-V---SGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred h-ccCCCCEEEEC-C-C---cHHHHHHHHHhcccCCEEEEE
Confidence 0 01235566532 1 1 124677888999999999865
No 317
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.10 E-value=2 Score=36.39 Aligned_cols=37 Identities=30% Similarity=0.484 Sum_probs=31.0
Q ss_pred CCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 53 ATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 53 ~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
+.++.+||..|+|. |..+..+++..|.. +++++.++.
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~-v~~~~~~~~ 169 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGAR-VIVTDRSDE 169 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEcCCHH
Confidence 47899999999995 77888888888865 899999874
No 318
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=91.00 E-value=0.69 Score=42.17 Aligned_cols=51 Identities=10% Similarity=0.168 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHh--------CCcEEEEEeCCCChhH
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAAT--------GCKICWGVEKADLPAK 93 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~--------~~~~v~GiD~s~~~~~ 93 (268)
.+..+++.++....-.+++||.|.|.++..+.+.. ...++.-||.|+....
T Consensus 65 ~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~ 123 (370)
T COG1565 65 QFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA 123 (370)
T ss_pred HHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence 34456667776666789999999999998887654 2335899999996333
No 319
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=90.94 E-value=1.7 Score=39.40 Aligned_cols=100 Identities=21% Similarity=0.213 Sum_probs=59.6
Q ss_pred HHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC-CC
Q psy17227 49 DQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL-TE 125 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~-~l 125 (268)
...++++|++||=.|+ |.|.++..+|+..|+. |++++.++. ..+. +++ ..|. . .++..+-. ++
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~-Vi~~~~~~~--k~~~----~~~---~lGa---~-~vi~~~~~~~~ 217 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCY-VVGSAGSSQ--KVDL----LKN---KLGF---D-EAFNYKEEPDL 217 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEcCCHH--HHHH----HHH---hcCC---C-EEEECCCcccH
Confidence 4467889999999998 4888999999998986 899988864 2111 110 1232 1 12211100 11
Q ss_pred c--cccc-ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 E--HREK-ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~--~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
. .... ...+|+++-. . . ...+...++.|++||++++.
T Consensus 218 ~~~i~~~~~~gvD~v~d~-v--G---~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 218 DAALKRYFPEGIDIYFDN-V--G---GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred HHHHHHHCCCCcEEEEEC-C--C---HHHHHHHHHHhccCCEEEEE
Confidence 1 0000 0135666632 2 1 24678888999999999975
No 320
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.93 E-value=0.033 Score=44.58 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=36.7
Q ss_pred cEEEEEcCCCCCcccccccceEEEEEeccc-cC--cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 114 EFRLVKGDFLTEEHREKITQASIVFVNNFA-FG--PTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 114 ~i~~~~gD~~~l~~~~~~~d~dvv~~~~~~-~~--~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+.++|--....+|.++ ++|+|.++.+. |. .+-..++++++|.|||||.+-++
T Consensus 30 ~vdlvc~As~e~~F~dn--s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 30 EVDLVCRASNESMFEDN--SVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred ccchhhhhhhhccCCCc--chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 35555544455667665 46677776552 32 45667789999999999999886
No 321
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.69 E-value=1.4 Score=38.05 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=57.7
Q ss_pred HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227 49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH 127 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~ 127 (268)
...++.++++||=.|||. |..++.+|+..|..++++++.++....++ + ..|. ...+ +...-...
T Consensus 91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~------~----~~g~-~~~~--~~~~~~~~-- 155 (277)
T cd08255 91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELA------E----ALGP-ADPV--AADTADEI-- 155 (277)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHH------H----HcCC-Cccc--cccchhhh--
Confidence 456788999999999876 77778888888876689998887522111 1 1220 0111 10000000
Q ss_pred cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 128 REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 128 ~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
....+|+++-... ....+.+..+.|+++|+++..
T Consensus 156 --~~~~~d~vl~~~~-----~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 156 --GGRGADVVIEASG-----SPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred --cCCCCCEEEEccC-----ChHHHHHHHHHhcCCcEEEEE
Confidence 1123566654211 134677888999999999864
No 322
>KOG2920|consensus
Probab=90.68 E-value=0.21 Score=43.91 Aligned_cols=36 Identities=11% Similarity=0.025 Sum_probs=28.5
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
-.+++|||+|||.|-..+.+... +...+...|.|..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~ 150 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAE 150 (282)
T ss_pred ecCceeEecCCcccccchhhhhh-ccceeeeEecchh
Confidence 36889999999999999987664 4344888888864
No 323
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.66 E-value=0.66 Score=42.90 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=38.2
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH
Q psy17227 45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE 96 (268)
Q Consensus 45 ~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~ 96 (268)
.--++.|++.|+++||=|.+|-.+..-++++ +.++|++||+||.+..+-+
T Consensus 25 ~vD~~aL~i~~~d~vl~ItSaG~N~L~yL~~--~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 25 RVDMEALNIGPDDRVLTITSAGCNALDYLLA--GPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred HHHHHHhCCCCCCeEEEEccCCchHHHHHhc--CCceEEEEeCCHHHHHHHH
Confidence 4456778999999999999998888776544 3445999999997544444
No 324
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.66 E-value=2.1 Score=39.96 Aligned_cols=98 Identities=21% Similarity=0.322 Sum_probs=57.1
Q ss_pred HHHHHHHHcCC-CCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc
Q psy17227 43 LISRMIDQINA-TPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG 120 (268)
Q Consensus 43 ~~~~ll~~l~~-~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g 120 (268)
.+..++...++ ..|++|+=+|||. |......++..|+. |+.+|.++. ....+ . ..| ..+.
T Consensus 181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~-ViV~d~dp~--r~~~A----~----~~G-----~~v~-- 242 (406)
T TIGR00936 181 TIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGAR-VIVTEVDPI--RALEA----A----MDG-----FRVM-- 242 (406)
T ss_pred HHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCE-EEEEeCChh--hHHHH----H----hcC-----CEeC--
Confidence 34445544443 5799999999997 44455556667886 999999984 11111 0 011 1111
Q ss_pred CCCCCcccccccceEEEEEeccccCcCHHHHHH-HHHhcCCCCcEEEEe
Q psy17227 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALK-ERFQDLKDGARIVSS 168 (268)
Q Consensus 121 D~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~-e~~r~LkpGG~~i~~ 168 (268)
+.. +-...+|+++.. ......+. +.+..+|+|++++..
T Consensus 243 ~le-----eal~~aDVVIta-----TG~~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 243 TME-----EAAKIGDIFITA-----TGNKDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred CHH-----HHHhcCCEEEEC-----CCCHHHHHHHHHhcCCCCcEEEEE
Confidence 211 112245676542 12344554 477899999999875
No 325
>PLN02740 Alcohol dehydrogenase-like
Probab=90.47 E-value=2.1 Score=39.23 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=32.8
Q ss_pred HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
....++++|++||=+|||. |.++..+|+..|..+|+++|.++.
T Consensus 191 ~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~ 234 (381)
T PLN02740 191 WNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE 234 (381)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH
Confidence 3456788999999999863 444566777788755999999875
No 326
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=90.23 E-value=0.41 Score=42.52 Aligned_cols=68 Identities=19% Similarity=0.334 Sum_probs=44.8
Q ss_pred EEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc-ceEE
Q psy17227 58 VFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT-QASI 136 (268)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~-d~dv 136 (268)
+|+|+=||.|++..-+ ...|...+.++|+++. +.+.++. + . . ...++|+.++... ... ++|+
T Consensus 2 ~~~dlFsG~Gg~~~g~-~~ag~~~~~a~e~~~~------a~~~y~~---N----~-~-~~~~~Di~~~~~~-~l~~~~D~ 64 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGL-EQAGFEVVWAVEIDPD------ACETYKA---N----F-P-EVICGDITEIDPS-DLPKDVDL 64 (335)
T ss_dssp EEEEET-TTTHHHHHH-HHTTEEEEEEEESSHH------HHHHHHH---H----H-T-EEEESHGGGCHHH-HHHHT-SE
T ss_pred cEEEEccCccHHHHHH-HhcCcEEEEEeecCHH------HHHhhhh---c----c-c-ccccccccccccc-cccccceE
Confidence 7999999999999865 4467777899999986 2222222 1 1 2 8899999987632 222 5788
Q ss_pred EEEecc
Q psy17227 137 VFVNNF 142 (268)
Q Consensus 137 v~~~~~ 142 (268)
++....
T Consensus 65 l~ggpP 70 (335)
T PF00145_consen 65 LIGGPP 70 (335)
T ss_dssp EEEE--
T ss_pred EEeccC
Confidence 876543
No 327
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.10 E-value=0.53 Score=35.83 Aligned_cols=84 Identities=24% Similarity=0.256 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--ccccc--cceEEEEEe
Q psy17227 65 GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HREKI--TQASIVFVN 140 (268)
Q Consensus 65 G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~~~--~d~dvv~~~ 140 (268)
|.|.++..+|+..|+ +|+++|.++. +. +.++ +.|. -.++..+-.++. ..+.. ..+|+++-.
T Consensus 1 ~vG~~a~q~ak~~G~-~vi~~~~~~~--k~----~~~~----~~Ga----~~~~~~~~~~~~~~i~~~~~~~~~d~vid~ 65 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGA-KVIATDRSEE--KL----ELAK----ELGA----DHVIDYSDDDFVEQIRELTGGRGVDVVIDC 65 (130)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEESSHH--HH----HHHH----HTTE----SEEEETTTSSHHHHHHHHTTTSSEEEEEES
T ss_pred ChHHHHHHHHHHcCC-EEEEEECCHH--HH----HHHH----hhcc----cccccccccccccccccccccccceEEEEe
Confidence 468889999999995 5999999975 21 1121 2331 122222222211 11111 246676642
Q ss_pred ccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 141 NFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 141 ~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
. .....+......|+|||++++.
T Consensus 66 -~----g~~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 66 -V----GSGDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp -S----SSHHHHHHHHHHEEEEEEEEEE
T ss_pred -c----CcHHHHHHHHHHhccCCEEEEE
Confidence 1 2257888999999999999986
No 328
>KOG0023|consensus
Probab=89.96 E-value=1.8 Score=38.89 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=36.4
Q ss_pred HHHHcCCCCCCEEEEEc-CCCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 47 MIDQINATPDDVFVDLG-SGVGQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiG-CG~G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
-+...++.||++|-=+| +|-|.++..+|+..|.+ |++||-+..
T Consensus 173 pLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~r-V~vis~~~~ 216 (360)
T KOG0023|consen 173 PLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMR-VTVISTSSK 216 (360)
T ss_pred hhHHcCCCCCcEEEEecCcccchHHHHHHHHhCcE-EEEEeCCch
Confidence 45677888999987777 45899999999999998 999999973
No 329
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=89.89 E-value=5 Score=33.57 Aligned_cols=104 Identities=20% Similarity=0.176 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHH---HhCC-cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAA---ATGC-KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR 128 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~---~~~~-~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~ 128 (268)
++| +.|++.|+-.|+-++..|. ..|. .+|+|+|++-.+..-+ +. ..+.|.|+.|+-.++...
T Consensus 68 ~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~-----a~--------e~p~i~f~egss~dpai~ 133 (237)
T COG3510 68 LQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPA-----AR--------EVPDILFIEGSSTDPAIA 133 (237)
T ss_pred cCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChh-----hh--------cCCCeEEEeCCCCCHHHH
Confidence 344 5799999999999887765 3452 2599999986422111 11 136899999999886421
Q ss_pred c------cccceEEEEEeccccC-cCHHHHHHHHHhcCCCCcEEEEeCCC
Q psy17227 129 E------KITQASIVFVNNFAFG-PTVDHALKERFQDLKDGARIVSSKSF 171 (268)
Q Consensus 129 ~------~~~d~dvv~~~~~~~~-~~~~~~l~e~~r~LkpGG~~i~~~~~ 171 (268)
+ +...- +..+...-|. ......++-....|.-|-.+++-|+.
T Consensus 134 eqi~~~~~~y~k-IfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 134 EQIRRLKNEYPK-IFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred HHHHHHhcCCCc-EEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccc
Confidence 1 11222 3333333232 22333333334678888888886443
No 330
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.86 E-value=3.5 Score=31.41 Aligned_cols=84 Identities=14% Similarity=0.184 Sum_probs=55.5
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.+| +|++||-|.=.-.....++.|+. ++.+|+++. + + ...++++..|+++.... -...
T Consensus 13 ~~g-kVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~---------~--------a--~~g~~~v~DDitnP~~~-iY~~ 70 (129)
T COG1255 13 ARG-KVVEVGIGFFLDVAKRLAERGFD-VLATDINEK---------T--------A--PEGLRFVVDDITNPNIS-IYEG 70 (129)
T ss_pred cCC-cEEEEccchHHHHHHHHHHcCCc-EEEEecccc---------c--------C--cccceEEEccCCCccHH-HhhC
Confidence 344 79999998665544444567888 999999983 0 1 13688999999985531 1124
Q ss_pred eEEEEEeccccCcCHHHHHHHHHhcCCC
Q psy17227 134 ASIVFVNNFAFGPTVDHALKERFQDLKD 161 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l~e~~r~Lkp 161 (268)
+|+|.+ +--.|++...+-.+.+.++-
T Consensus 71 A~lIYS--iRpppEl~~~ildva~aVga 96 (129)
T COG1255 71 ADLIYS--IRPPPELQSAILDVAKAVGA 96 (129)
T ss_pred ccceee--cCCCHHHHHHHHHHHHhhCC
Confidence 566655 22456777777777776553
No 331
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=89.51 E-value=1.6 Score=38.97 Aligned_cols=44 Identities=23% Similarity=0.353 Sum_probs=32.7
Q ss_pred HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
.+..+++.+|++||=+|+|. |.++..+|+..|...|++++.++.
T Consensus 155 ~l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~ 199 (339)
T cd08239 155 ALRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE 199 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 34567888999999998753 344566777788876899988864
No 332
>PLN02494 adenosylhomocysteinase
Probab=89.44 E-value=1.8 Score=41.12 Aligned_cols=97 Identities=15% Similarity=0.217 Sum_probs=55.7
Q ss_pred HHHHHHHcCC-CCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227 44 ISRMIDQINA-TPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD 121 (268)
Q Consensus 44 ~~~ll~~l~~-~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD 121 (268)
+..++...++ -.|++|+=+|+|. |......++.+|+. |+.+|.++.....+. ..| ..+. +
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~-VIV~e~dp~r~~eA~----------~~G-----~~vv--~ 302 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGAR-VIVTEIDPICALQAL----------MEG-----YQVL--T 302 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchhhHHHH----------hcC-----Ceec--c
Confidence 3445544444 5689999999985 43444445567886 999999984111111 011 1121 2
Q ss_pred CCCCcccccccceEEEEEeccccCcCHHHH-HHHHHhcCCCCcEEEEe
Q psy17227 122 FLTEEHREKITQASIVFVNNFAFGPTVDHA-LKERFQDLKDGARIVSS 168 (268)
Q Consensus 122 ~~~l~~~~~~~d~dvv~~~~~~~~~~~~~~-l~e~~r~LkpGG~~i~~ 168 (268)
+. +-...+|+++.. +..... ..+.++.+|||++++-.
T Consensus 303 le-----Eal~~ADVVI~t-----TGt~~vI~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 303 LE-----DVVSEADIFVTT-----TGNKDIIMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred HH-----HHHhhCCEEEEC-----CCCccchHHHHHhcCCCCCEEEEc
Confidence 21 112245677652 222233 37788999999999975
No 333
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.41 E-value=0.54 Score=42.26 Aligned_cols=66 Identities=21% Similarity=0.385 Sum_probs=43.2
Q ss_pred EEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEEEE
Q psy17227 59 FVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVF 138 (268)
Q Consensus 59 vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dvv~ 138 (268)
|+|+-||.|++..-+- ..|...+.++|+++.+ .+.++. + .+. .++++|+.++...+ ..++|+++
T Consensus 1 vidLF~G~GG~~~Gl~-~aG~~~~~a~e~~~~a------~~ty~~---N----~~~-~~~~~Di~~~~~~~-~~~~dvl~ 64 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFE-QAGFKCVFASEIDKYA------QKTYEA---N----FGN-KVPFGDITKISPSD-IPDFDILL 64 (315)
T ss_pred CEEEecCccHHHHHHH-HcCCeEEEEEeCCHHH------HHHHHH---h----CCC-CCCccChhhhhhhh-CCCcCEEE
Confidence 6899999999997654 4688767899999852 222221 1 123 56678988875322 33567776
Q ss_pred Ee
Q psy17227 139 VN 140 (268)
Q Consensus 139 ~~ 140 (268)
..
T Consensus 65 gg 66 (315)
T TIGR00675 65 GG 66 (315)
T ss_pred ec
Confidence 54
No 334
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.25 E-value=3.7 Score=36.40 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=59.4
Q ss_pred HHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227 49 DQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH 127 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~ 127 (268)
...++.++.+||-+|+| .|..++.+|+..|+..++.++-++. .. +.++ ..+. . .++..+-.+..-
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~--~~----~~~~----~~g~---~-~~~~~~~~~~~~ 218 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEE--KL----ELAK----KLGA---T-ETVDPSREDPEA 218 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH--HH----HHHH----HhCC---e-EEecCCCCCHHH
Confidence 55678899999999976 3777888888888766788888864 11 1111 1221 1 222222111100
Q ss_pred --cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 128 --REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 128 --~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
......+|+++-... ....+.++.+.|+++|+++..
T Consensus 219 ~~~~~~~~vd~v~~~~~-----~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 219 QKEDNPYGFDVVIEATG-----VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred HHHhcCCCCcEEEECCC-----ChHHHHHHHHHHhcCCEEEEE
Confidence 001123566664211 135677888999999999865
No 335
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=89.09 E-value=3.1 Score=37.14 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=56.3
Q ss_pred HcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--
Q psy17227 50 QINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-- 126 (268)
Q Consensus 50 ~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-- 126 (268)
..++.++.+||-.|+| .|..++.+|+..|...+++++.++. .. +.++ ..|. -.++...-.++.
T Consensus 162 ~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~--~~----~~~~----~~g~----~~vi~~~~~~~~~~ 227 (347)
T cd05278 162 LAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPE--RL----DLAK----EAGA----TDIINPKNGDIVEQ 227 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHH--HH----HHHH----HhCC----cEEEcCCcchHHHH
Confidence 3457789999998886 4778888899888645888877653 11 1111 1221 112211111110
Q ss_pred cc--ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 HR--EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 ~~--~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+. .+...+|+++-. . . ....+.+..+.|+++|+++..
T Consensus 228 i~~~~~~~~~d~vld~-~--g--~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 228 ILELTGGRGVDCVIEA-V--G--FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred HHHHcCCCCCcEEEEc-c--C--CHHHHHHHHHHhhcCCEEEEE
Confidence 00 011235666532 1 1 124678888999999999865
No 336
>PRK13699 putative methylase; Provisional
Probab=88.97 E-value=0.34 Score=41.49 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCCCcEEEE
Q psy17227 149 DHALKERFQDLKDGARIVS 167 (268)
Q Consensus 149 ~~~l~e~~r~LkpGG~~i~ 167 (268)
...+.+++|+|||||.+++
T Consensus 52 ~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHcCCCCEEEE
Confidence 4678999999999999885
No 337
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=88.95 E-value=3.6 Score=36.58 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=59.7
Q ss_pred HHHHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC-C
Q psy17227 47 MIDQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF-L 123 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~-~ 123 (268)
+....++++|++||=.|. |.|.++..+|+..|.. +++++-+++ ... .+ +..|. . .++..+- .
T Consensus 130 l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~-Vi~~~~s~~--~~~----~~----~~lGa---~-~vi~~~~~~ 194 (325)
T TIGR02825 130 LLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCK-VVGAAGSDE--KVA----YL----KKLGF---D-VAFNYKTVK 194 (325)
T ss_pred HHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCE-EEEEeCCHH--HHH----HH----HHcCC---C-EEEeccccc
Confidence 345567899999998883 6888999999988886 899988864 221 11 12332 1 1111111 0
Q ss_pred CCc--ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 124 TEE--HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 124 ~l~--~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+. ... ....+|+++- .. . ...+...++.|++||+++..
T Consensus 195 ~~~~~~~~~~~~gvdvv~d-~~--G---~~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 195 SLEETLKKASPDGYDCYFD-NV--G---GEFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred cHHHHHHHhCCCCeEEEEE-CC--C---HHHHHHHHHHhCcCcEEEEe
Confidence 110 000 0013566663 22 1 23467888999999999975
No 338
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=88.91 E-value=0.2 Score=37.72 Aligned_cols=35 Identities=6% Similarity=0.206 Sum_probs=26.3
Q ss_pred eEEEEEecc---cc----CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNF---AF----GPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~---~~----~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+|+|++.++ +| +..+...|+.+++.|+|||.||+-
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 477887665 22 133777899999999999999994
No 339
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=88.83 E-value=1.8 Score=38.91 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=31.6
Q ss_pred HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
....+.++++||=.|||. |.++..+|+..|...+++++.++.
T Consensus 154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~ 196 (347)
T PRK10309 154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSE 196 (347)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH
Confidence 445677899999999854 445667778888876789988874
No 340
>PLN02827 Alcohol dehydrogenase-like
Probab=88.51 E-value=3.2 Score=38.09 Aligned_cols=42 Identities=24% Similarity=0.247 Sum_probs=31.7
Q ss_pred HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
...++.+|++||=.|||. |.+++.+|+..|...++++|.++.
T Consensus 187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~ 229 (378)
T PLN02827 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPE 229 (378)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH
Confidence 345788999999998753 445566777788866899998874
No 341
>PRK11524 putative methyltransferase; Provisional
Probab=88.49 E-value=0.4 Score=42.40 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=36.0
Q ss_pred ccEEEEEcCCCCC--cccccccceEEEEEeccccC-----------------cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 113 GEFRLVKGDFLTE--EHREKITQASIVFVNNFAFG-----------------PTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 113 ~~i~~~~gD~~~l--~~~~~~~d~dvv~~~~~~~~-----------------~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+.++++||+.+. .++++ .+|+|+++..+.. .-+...+.++.|+|||||.+++.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~--siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSE--SVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHHhcccC--cccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3567899998874 23343 4577887644321 00235678999999999999864
No 342
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.47 E-value=1.6 Score=41.89 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=57.4
Q ss_pred CCCCEEEEEcCCCC-HHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC--------
Q psy17227 54 TPDDVFVDLGSGVG-QVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-------- 124 (268)
Q Consensus 54 ~~~~~vLDiGCG~G-~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-------- 124 (268)
.++.+|+=+|||.= ..+..+++..|+. |+.+|.++. .++. ++ ..| .+++.-|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d~~~~--rle~----a~----~lG-----a~~v~v~~~e~g~~~~gY 225 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFDTRPE--VKEQ----VQ----SMG-----AEFLELDFKEEGGSGDGY 225 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCHH--HHHH----HH----HcC-----CeEEeccccccccccccc
Confidence 46789999999875 4466667777887 999999975 2221 11 122 2222222211
Q ss_pred ---C--c--------ccccccceEEEEEeccccC-cCHHHHHHHHHhcCCCCcEEE
Q psy17227 125 ---E--E--------HREKITQASIVFVNNFAFG-PTVDHALKERFQDLKDGARIV 166 (268)
Q Consensus 125 ---l--~--------~~~~~~d~dvv~~~~~~~~-~~~~~~l~e~~r~LkpGG~~i 166 (268)
+ + +.+...++|+++....... +.+.-..+++.+.+|||+.++
T Consensus 226 a~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 226 AKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred eeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 0 0 1222345788854433222 234345688899999999988
No 343
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=88.46 E-value=0.72 Score=37.31 Aligned_cols=102 Identities=16% Similarity=0.033 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcccccc-EEEEEcCCCC-Ccccccccc
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGE-FRLVKGDFLT-EEHREKITQ 133 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-i~~~~gD~~~-l~~~~~~~d 133 (268)
|++++=+|+..=.+=. +|.+.|+.+|.-||.++- .+.. .++ .+ -++...|+.+ +.-....||
T Consensus 2 ~~~g~V~GS~~PwvEv-~aL~~GA~~iltveyn~L--~i~~---~~~----------dr~ssi~p~df~~~~~~y~~~fD 65 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEV-MALQHGAAKILTVEYNKL--EIQE---EFR----------DRLSSILPVDFAKNWQKYAGSFD 65 (177)
T ss_pred CceEEEEecCCchhhH-HHHHcCCceEEEEeeccc--ccCc---ccc----------cccccccHHHHHHHHHHhhccch
Confidence 5778889988666544 456688888999998862 1111 010 11 1222223321 110112234
Q ss_pred eEEEEEecccc-----------CcCHHHHHHHHHhcCCCCcEEEEeCCCCCC
Q psy17227 134 ASIVFVNNFAF-----------GPTVDHALKERFQDLKDGARIVSSKSFCPL 174 (268)
Q Consensus 134 ~dvv~~~~~~~-----------~~~~~~~l~e~~r~LkpGG~~i~~~~~~~~ 174 (268)
+ +.+.+++-| +....+.+.++.++|||||.+++.-|+.++
T Consensus 66 ~-~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 66 F-AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred h-hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 3 222233322 112355677777899999999988777654
No 344
>KOG2360|consensus
Probab=88.22 E-value=1.1 Score=41.13 Aligned_cols=91 Identities=19% Similarity=0.265 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD 121 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD 121 (268)
+.......++..+|.+|+|.-|-.|.=+.++|.... ..+++|.|.+.+ ..+.+++.+. ..| ...++.+++|
T Consensus 201 asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~--r~~tl~~~l~----~ag--~~~~~~~~~d 272 (413)
T KOG2360|consen 201 ASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAK--RAATLRKLLK----IAG--VSIVESVEGD 272 (413)
T ss_pred hhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhH--HHHHHHHHHH----HcC--CCcccccccc
Confidence 334455567888899999999999999999988654 446999999986 4433444333 233 3467788999
Q ss_pred CCCCcccccccceEEEEEec
Q psy17227 122 FLTEEHREKITQASIVFVNN 141 (268)
Q Consensus 122 ~~~l~~~~~~~d~dvv~~~~ 141 (268)
+...+.++...++..+++..
T Consensus 273 f~~t~~~~~~~~v~~iL~Dp 292 (413)
T KOG2360|consen 273 FLNTATPEKFRDVTYILVDP 292 (413)
T ss_pred ccCCCCcccccceeEEEeCC
Confidence 99866555555665566543
No 345
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=88.09 E-value=4.7 Score=35.58 Aligned_cols=100 Identities=22% Similarity=0.282 Sum_probs=59.6
Q ss_pred HHHcCCCCCCEEEEEc--CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 48 IDQINATPDDVFVDLG--SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 48 l~~l~~~~~~~vLDiG--CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
....++.+|++||=.| .|.|.+++.+|+..|+. +++++-+++ .. +.++ ..|. . .++..+-.++
T Consensus 136 ~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~-vi~~~~s~~--~~----~~l~----~~Ga---~-~vi~~~~~~~ 200 (329)
T cd08294 136 LEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCK-VIGCAGSDD--KV----AWLK----ELGF---D-AVFNYKTVSL 200 (329)
T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEeCCHH--HH----HHHH----HcCC---C-EEEeCCCccH
Confidence 3556788999999888 46788889999998986 899988864 11 1111 2232 1 1221111111
Q ss_pred c--ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 E--HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~--~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
. ... ....+|+++- .. . ...+...++.|+++|+++..
T Consensus 201 ~~~v~~~~~~gvd~vld-~~--g---~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 201 EEALKEAAPDGIDCYFD-NV--G---GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred HHHHHHHCCCCcEEEEE-CC--C---HHHHHHHHHhhccCCEEEEE
Confidence 1 000 0023566653 11 1 24578889999999999865
No 346
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.84 E-value=3.6 Score=36.98 Aligned_cols=101 Identities=19% Similarity=0.158 Sum_probs=59.1
Q ss_pred HHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 48 IDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
+....++++++||=.||| .|..+..+|+..|...+++++.++....+++ ..|. -.++..+-.++.
T Consensus 159 ~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----------~~g~----~~~v~~~~~~~~ 224 (351)
T cd08285 159 AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK----------EYGA----TDIVDYKNGDVV 224 (351)
T ss_pred HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH----------HcCC----ceEecCCCCCHH
Confidence 345678889999999886 4566777888888866899999874222211 1221 111211111110
Q ss_pred -----ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 -----HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 -----~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.. ...+|+++-. . . -...+.+..+.|+++|+++..
T Consensus 225 ~~i~~~~~-~~~~d~vld~-~--g--~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 225 EQILKLTG-GKGVDAVIIA-G--G--GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred HHHHHHhC-CCCCcEEEEC-C--C--CHHHHHHHHHHhhcCCEEEEe
Confidence 111 1235666632 1 1 124678889999999999865
No 347
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.62 E-value=3.5 Score=36.91 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=59.4
Q ss_pred HHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE-cCCCCC
Q psy17227 49 DQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK-GDFLTE 125 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~-gD~~~l 125 (268)
...++++|++||=.|+ |.|.++..+|+..|.. +++++.++. .... +++ ..|.. . ++. .+-.++
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~-Vi~~~~~~~--~~~~----~~~---~lGa~--~--vi~~~~~~~~ 210 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCY-VVGSAGSDE--KVDL----LKN---KLGFD--D--AFNYKEEPDL 210 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEeCCHH--HHHH----HHH---hcCCc--e--eEEcCCcccH
Confidence 4467899999999996 6788889999988986 899888764 1111 110 02321 1 121 110011
Q ss_pred c--ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 E--HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~--~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
. ... ....+|+++-. . . ...+.+..+.|++||+++..
T Consensus 211 ~~~i~~~~~~gvd~v~d~-~--g---~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 211 DAALKRYFPNGIDIYFDN-V--G---GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred HHHHHHhCCCCcEEEEEC-C--C---HHHHHHHHHHhccCcEEEEe
Confidence 0 000 00235666632 1 1 25678889999999999975
No 348
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=87.52 E-value=2.1 Score=37.96 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=50.6
Q ss_pred CCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227 54 TPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
.++++||=+|||. |.++..+|+..|+..++.+|.++. +++.+ . .. .++ |..+. .. .
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~--rl~~a----~--------~~---~~i--~~~~~--~~--~ 199 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPR--RRDGA----T--------GY---EVL--DPEKD--PR--R 199 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH--HHHhh----h--------hc---ccc--Chhhc--cC--C
Confidence 4677899889763 556777888889886778887764 22111 0 00 011 11110 01 1
Q ss_pred ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+|+++-. . .-...+...++.|+|||++++.
T Consensus 200 g~Dvvid~-~----G~~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 200 DYRAIYDA-S----GDPSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred CCCEEEEC-C----CCHHHHHHHHHhhhcCcEEEEE
Confidence 24556532 2 1134567888999999999975
No 349
>KOG0821|consensus
Probab=87.36 E-value=2.2 Score=36.43 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC
Q psy17227 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF 122 (268)
Q Consensus 43 ~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~ 122 (268)
...++++..+.-.++-|++||-|.|++++.+.. .+..+..-+++++..+---++...+ ...+..+..+|+
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~-a~~~RL~vVE~D~RFip~LQ~L~EA---------a~~~~~IHh~D~ 107 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILN-ADVARLLVVEKDTRFIPGLQMLSEA---------APGKLRIHHGDV 107 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHh-cchhheeeeeeccccChHHHHHhhc---------CCcceEEecccc
Confidence 446788888777778899999999999998765 4565678888887533322222211 234778888887
Q ss_pred CCC
Q psy17227 123 LTE 125 (268)
Q Consensus 123 ~~l 125 (268)
...
T Consensus 108 LR~ 110 (326)
T KOG0821|consen 108 LRF 110 (326)
T ss_pred cee
Confidence 654
No 350
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=86.97 E-value=1.7 Score=41.22 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceE
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQAS 135 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~d 135 (268)
-..|+|...|.|+++..+.. .+ |+-....|.. .-. .+.. +-+.|+ |-..+.=.+.+++...+ +|
T Consensus 366 iRNVMDMnAg~GGFAAAL~~-~~---VWVMNVVP~~-~~n-tL~v----IydRGL----IG~yhDWCE~fsTYPRT--YD 429 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALID-DP---VWVMNVVPVS-GPN-TLPV----IYDRGL----IGVYHDWCEAFSTYPRT--YD 429 (506)
T ss_pred eeeeeeecccccHHHHHhcc-CC---ceEEEecccC-CCC-cchh----hhhccc----chhccchhhccCCCCcc--hh
Confidence 34699999999999976543 23 4444444320 000 0000 001222 11111112234433333 34
Q ss_pred EEEEeccc----cCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 136 IVFVNNFA----FGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 136 vv~~~~~~----~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++-++.++ .--++...+.||-|+|+|||.+|+-
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 55444331 2245788899999999999999996
No 351
>PRK10458 DNA cytosine methylase; Provisional
Probab=86.89 E-value=3.7 Score=39.07 Aligned_cols=60 Identities=17% Similarity=0.129 Sum_probs=39.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
..+++|+=||.|++..-+ ...|...|.++|+++. +.+.++. +.+ ..+....+++|+.++.
T Consensus 88 ~~~~iDLFsGiGGl~lGf-e~aG~~~v~a~Eid~~------A~~TY~~---N~~-~~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGF-EAIGGQCVFTSEWNKH------AVRTYKA---NWY-CDPATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHH-HHcCCEEEEEEechHH------HHHHHHH---HcC-CCCccceeccChhhCc
Confidence 558999999999999765 4457776899999975 2222321 111 0124456678887765
No 352
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=86.79 E-value=6.2 Score=35.19 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=58.7
Q ss_pred HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC---
Q psy17227 49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT--- 124 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~--- 124 (268)
....+.++.+||-.|+|. |.++..+|+..|...+++++-++.. .+.++ ..|. ..++..+-..
T Consensus 153 ~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~------~~~l~----~~g~----~~~~~~~~~~~~~ 218 (343)
T cd08236 153 RLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEK------LAVAR----ELGA----DDTINPKEEDVEK 218 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH------HHHHH----HcCC----CEEecCccccHHH
Confidence 355778899999999876 7788888888887668888887641 11221 1121 1122111111
Q ss_pred C-cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 E-EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l-~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+ ... +...+|+++-. ......+..+.+.|+++|+++..
T Consensus 219 ~~~~~-~~~~~d~vld~-----~g~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 219 VRELT-EGRGADLVIEA-----AGSPATIEQALALARPGGKVVLV 257 (343)
T ss_pred HHHHh-CCCCCCEEEEC-----CCCHHHHHHHHHHhhcCCEEEEE
Confidence 0 011 11135666642 11234677888999999999865
No 353
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=86.75 E-value=4.8 Score=37.84 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=51.0
Q ss_pred CCC-CCCEEEEEcCCCCH-HHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccc
Q psy17227 52 NAT-PDDVFVDLGSGVGQ-VVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE 129 (268)
Q Consensus 52 ~~~-~~~~vLDiGCG~G~-~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~ 129 (268)
++. .|++|+=+|+|.=+ .+...++..|.. |+.+|.++.. ... +. ..| .++. ++. +
T Consensus 207 ~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~-ViV~d~dp~r--a~~----A~----~~G-----~~v~--~l~-----e 263 (425)
T PRK05476 207 NVLIAGKVVVVAGYGDVGKGCAQRLRGLGAR-VIVTEVDPIC--ALQ----AA----MDG-----FRVM--TME-----E 263 (425)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCchh--hHH----HH----hcC-----CEec--CHH-----H
Confidence 544 78999999998633 333345556775 9999999851 111 00 011 1211 221 1
Q ss_pred cccceEEEEEeccccCcCHHHHHH-HHHhcCCCCcEEEEe
Q psy17227 130 KITQASIVFVNNFAFGPTVDHALK-ERFQDLKDGARIVSS 168 (268)
Q Consensus 130 ~~~d~dvv~~~~~~~~~~~~~~l~-e~~r~LkpGG~~i~~ 168 (268)
-...+|+++.. + .....+. +.++.+|+|++++..
T Consensus 264 al~~aDVVI~a-T----G~~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 264 AAELGDIFVTA-T----GNKDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred HHhCCCEEEEC-C----CCHHHHHHHHHhcCCCCCEEEEc
Confidence 11245677642 1 2234564 678999999999865
No 354
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=86.44 E-value=3 Score=32.27 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA 134 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~ 134 (268)
+..++++||-|.=.-.....+..|+. |+++|+.+. . + ...+.++..|+.+..+. -..++
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~d-V~~tDi~~~-----~----a----------~~g~~~v~DDif~P~l~-iY~~a 71 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFD-VIATDINPR-----K----A----------PEGVNFVVDDIFNPNLE-IYEGA 71 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-E-EEEE-SS-S-----------------------STTEE---SSS--HH-HHTTE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCc-EEEEECccc-----c----c----------ccCcceeeecccCCCHH-HhcCC
Confidence 33489999999766655555667887 999999984 1 0 13677999999985431 22367
Q ss_pred EEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 135 SIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 135 dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
|+|.+- --.+++...+.++.+.. |.-++++
T Consensus 72 ~lIYSi--RPP~El~~~il~lA~~v--~adlii~ 101 (127)
T PF03686_consen 72 DLIYSI--RPPPELQPPILELAKKV--GADLIIR 101 (127)
T ss_dssp EEEEEE--S--TTSHHHHHHHHHHH--T-EEEEE
T ss_pred cEEEEe--CCChHHhHHHHHHHHHh--CCCEEEE
Confidence 777652 23577788888877654 4666665
No 355
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=86.39 E-value=12 Score=33.38 Aligned_cols=78 Identities=10% Similarity=0.135 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcCCccccccCCCCCCCCcccCcHH--HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHH---HhCCcEE
Q psy17227 8 RHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFD--LISRMIDQINATPDDVFVDLGSGVGQVVLQVAA---ATGCKIC 82 (268)
Q Consensus 8 ~~~~~~~y~~~~~~~~~~~~y~~~~~~~~g~~~~~--~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~---~~~~~~v 82 (268)
-.++...|+.+..-+..++.=...+. ++.+-. .+......++.-++++|+=|||| .++..+++ ..+...|
T Consensus 131 ~~~L~~lf~~a~~~~k~vr~et~i~~---~~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG--~iG~~~a~~L~~~g~~~V 205 (311)
T cd05213 131 GKLLNRLFQKAIKVGKRVRTETGISR---GAVSISSAAVELAEKIFGNLKGKKVLVIGAG--EMGELAAKHLAAKGVAEI 205 (311)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCC---CCcCHHHHHHHHHHHHhCCccCCEEEEECcH--HHHHHHHHHHHHcCCCEE
Confidence 34555556665554555543222221 122222 22333333444578999999985 44443333 3355668
Q ss_pred EEEeCCCC
Q psy17227 83 WGVEKADL 90 (268)
Q Consensus 83 ~GiD~s~~ 90 (268)
+.++.++.
T Consensus 206 ~v~~r~~~ 213 (311)
T cd05213 206 TIANRTYE 213 (311)
T ss_pred EEEeCCHH
Confidence 89998863
No 356
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=86.07 E-value=11 Score=33.61 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=57.4
Q ss_pred HHcCCCCC--CEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 49 DQINATPD--DVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 49 ~~l~~~~~--~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
...+++++ ++||=.|+ |.|.+++.+|+..|+.+|++++-+++ +.. .+.+ ..|. .. ++..+-.+
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~--~~~----~~~~---~lGa--~~--vi~~~~~~ 212 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDE--KCQ----LLKS---ELGF--DA--AINYKTDN 212 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHH--HHH----HHHH---hcCC--cE--EEECCCCC
Confidence 34456666 89988885 68888999999889845899988864 111 1111 1232 11 22211111
Q ss_pred Cc--ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EE--HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~--~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+. ... ....+|+++- .. .. ..+.+.++.|++||+++..
T Consensus 213 ~~~~i~~~~~~gvd~vid-~~---g~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 213 VAERLRELCPEGVDVYFD-NV---GG--EISDTVISQMNENSHIILC 253 (345)
T ss_pred HHHHHHHHCCCCceEEEE-CC---Cc--HHHHHHHHHhccCCEEEEE
Confidence 11 000 0023566663 22 11 2357788999999999974
No 357
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.73 E-value=2.3 Score=41.80 Aligned_cols=92 Identities=12% Similarity=0.081 Sum_probs=55.3
Q ss_pred CEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc--ccc
Q psy17227 57 DVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR--EKI 131 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~--~~~ 131 (268)
++|+= ||.|.++..+++. .+.. ++.||.+++ .+.. +++ .....+.||..+...- .+.
T Consensus 401 ~~vII--~G~Gr~G~~va~~L~~~g~~-vvvID~d~~--~v~~----~~~---------~g~~v~~GDat~~~~L~~agi 462 (601)
T PRK03659 401 PQVII--VGFGRFGQVIGRLLMANKMR-ITVLERDIS--AVNL----MRK---------YGYKVYYGDATQLELLRAAGA 462 (601)
T ss_pred CCEEE--ecCchHHHHHHHHHHhCCCC-EEEEECCHH--HHHH----HHh---------CCCeEEEeeCCCHHHHHhcCC
Confidence 34544 5556777766654 3455 999999985 2221 111 2467899999986532 233
Q ss_pred cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+++++++. ...++....+-...|.+.|...+++.
T Consensus 463 ~~A~~vv~~--~~d~~~n~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 463 EKAEAIVIT--CNEPEDTMKIVELCQQHFPHLHILAR 497 (601)
T ss_pred ccCCEEEEE--eCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 456666552 22333344455666778888888864
No 358
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=85.68 E-value=5.4 Score=35.51 Aligned_cols=100 Identities=20% Similarity=0.179 Sum_probs=58.1
Q ss_pred HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-
Q psy17227 49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE- 126 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~- 126 (268)
....+.++++||-.|+|. |..++.+|+..|.. ++++.-++. .. +.++ ..+. -+++...-.++.
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~-v~~~~~s~~--~~----~~~~----~~g~----~~v~~~~~~~~~~ 217 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGAR-VIVVDIDDE--RL----EFAR----ELGA----DDTINVGDEDVAA 217 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEECCCHH--HH----HHHH----HhCC----CEEecCcccCHHH
Confidence 456788999999999874 77888899988887 888877753 11 1111 1221 112211111110
Q ss_pred -c--cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 -H--REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 -~--~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+ ..+...+|+++-... -...+.++++.|+++|+++..
T Consensus 218 ~l~~~~~~~~vd~vld~~g-----~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 218 RLRELTDGEGADVVIDATG-----NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred HHHHHhCCCCCCEEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence 0 001122566654211 134578889999999999864
No 359
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=85.63 E-value=11 Score=34.36 Aligned_cols=96 Identities=19% Similarity=0.187 Sum_probs=53.0
Q ss_pred CCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEE-cCCCCCcccc
Q psy17227 52 NATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVK-GDFLTEEHRE 129 (268)
Q Consensus 52 ~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~-gD~~~l~~~~ 129 (268)
.+++|++||=.|||. |.++..+|+..|.. ++.++.++. +... .++ ..|. -.++. .+...+. .
T Consensus 180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~-vi~~~~~~~--~~~~---~~~----~~Ga----~~vi~~~~~~~~~--~ 243 (360)
T PLN02586 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISSSSN--KEDE---AIN----RLGA----DSFLVSTDPEKMK--A 243 (360)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCcc--hhhh---HHH----hCCC----cEEEcCCCHHHHH--h
Confidence 356899999899863 55567778888876 888888764 1111 111 1221 11111 1100110 1
Q ss_pred cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 130 KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 130 ~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
....+|+++- .. .-...+.+..+.|++||+++..
T Consensus 244 ~~~~~D~vid-~~----g~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 244 AIGTMDYIID-TV----SAVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred hcCCCCEEEE-CC----CCHHHHHHHHHHhcCCcEEEEe
Confidence 0112456653 22 1124677888999999999865
No 360
>KOG1098|consensus
Probab=85.26 E-value=0.94 Score=44.00 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCc-EEEEEeCCC
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKAD 89 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~-~v~GiD~s~ 89 (268)
+.++..||||||-+|+-+--+++..|.. -|+|||+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 6788899999999999998777766654 589999987
No 361
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=85.11 E-value=7.8 Score=35.19 Aligned_cols=102 Identities=16% Similarity=0.234 Sum_probs=58.6
Q ss_pred HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
....++.++++||=.|+|. |..++.+|+..|...+++++.++. +.. .++ ..|. -.++..+-.++.
T Consensus 179 ~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~--k~~----~~~----~~g~----~~~i~~~~~~~~ 244 (365)
T cd08278 179 LNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDS--RLE----LAK----ELGA----THVINPKEEDLV 244 (365)
T ss_pred hhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH--HHH----HHH----HcCC----cEEecCCCcCHH
Confidence 3445678899999998865 667778888889866999999874 211 111 1221 122221111110
Q ss_pred --ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 --HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 --~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
... ....+|+++-. . . ....+..+.+.|+++|+++..
T Consensus 245 ~~v~~~~~~~~d~vld~-~--g--~~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 245 AAIREITGGGVDYALDT-T--G--VPAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred HHHHHHhCCCCcEEEEC-C--C--CcHHHHHHHHHhccCCEEEEe
Confidence 000 01235565532 1 1 124577888999999999975
No 362
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.10 E-value=8.6 Score=34.39 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=33.3
Q ss_pred HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
....+.++.+||=.|+|. |..+..+|+..|...++.++-++.
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~ 198 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPS 198 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence 566788999999888876 777888888888765788877764
No 363
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.06 E-value=1.3 Score=40.78 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=26.2
Q ss_pred CCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 55 PDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 55 ~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
++.+|+=+|+| .|..+...++..|+. |+.+|.++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~-V~v~d~~~~ 201 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGAT-VTILDINID 201 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCe-EEEEECCHH
Confidence 34569999998 456666667777886 999999874
No 364
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=84.06 E-value=2.7 Score=40.02 Aligned_cols=86 Identities=17% Similarity=0.188 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.|.+|+=+|+|. |......++.+|+. |+.+|.++.....+. . ..+++. ++. +-...
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~-ViV~e~dp~~a~~A~----------~-----~G~~~~--~le-----ell~~ 309 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGAR-VVVTEIDPICALQAA----------M-----EGYQVV--TLE-----DVVET 309 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchhHHHHH----------h-----cCceec--cHH-----HHHhc
Confidence 688999999997 44444445567886 999999874111110 0 112211 221 21224
Q ss_pred eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
+|+|+... .....+ .+.+..+|||++++-+
T Consensus 310 ADIVI~at-----Gt~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 310 ADIFVTAT-----GNKDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred CCEEEECC-----CcccccCHHHHhccCCCcEEEEc
Confidence 56776531 223344 4788999999999965
No 365
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=83.72 E-value=7.6 Score=35.25 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=32.1
Q ss_pred HHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 48 IDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
....++.+|++||=.||| .|.++..+|+..|..+|++++.++.
T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~ 220 (365)
T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINED 220 (365)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 345678899999998875 2445566778888856999999874
No 366
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=82.44 E-value=5.9 Score=38.51 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=52.6
Q ss_pred CEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc--ccc
Q psy17227 57 DVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR--EKI 131 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~--~~~ 131 (268)
++++=+|| |..+..+++. .|.. ++.||.+++ +..+ ++ ......++||..+...- .+.
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~-vvvId~d~~--~~~~----~~---------~~g~~~i~GD~~~~~~L~~a~i 479 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIP-LVVIETSRT--RVDE----LR---------ERGIRAVLGNAANEEIMQLAHL 479 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCC-EEEEECCHH--HHHH----HH---------HCCCeEEEcCCCCHHHHHhcCc
Confidence 34555555 6666667764 3555 999999985 2221 11 13578999999985421 233
Q ss_pred cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.++|.+++. ...++....+-...|.+.|...++..
T Consensus 480 ~~a~~viv~--~~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 480 DCARWLLLT--IPNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred cccCEEEEE--cCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 456655542 12222333344445666777777763
No 367
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=82.14 E-value=2.6 Score=37.88 Aligned_cols=86 Identities=19% Similarity=0.291 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.|.+|.=||.|. |.-....++.+|.+ |++.|.+... ....+. ..+ +.+-...
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~-V~~~d~~~~~-------------------~~~~~~--~~~-----l~ell~~ 196 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAK-VVYYSTSGKN-------------------KNEEYE--RVS-----LEELLKT 196 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCE-EEEECCCccc-------------------cccCce--eec-----HHHHhhc
Confidence 578899999975 66555566667887 9999986420 001111 112 2222235
Q ss_pred eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
+|+|+++.. ..++-...+ .+.+..+|||..||=+
T Consensus 197 sDvv~lh~P-lt~~T~~li~~~~~~~Mk~~a~lIN~ 231 (311)
T PRK08410 197 SDIISIHAP-LNEKTKNLIAYKELKLLKDGAILINV 231 (311)
T ss_pred CCEEEEeCC-CCchhhcccCHHHHHhCCCCeEEEEC
Confidence 678887544 223444445 5667999999999854
No 368
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=81.89 E-value=7.3 Score=34.46 Aligned_cols=141 Identities=15% Similarity=0.129 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhcC-CccccccCCCCCCCCcccCcHHHHHH--HHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEE
Q psy17227 8 RHIIQQTYNQSVT-EPEKLNVYQPFSPFVYGETSFDLISR--MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWG 84 (268)
Q Consensus 8 ~~~~~~~y~~~~~-~~~~~~~y~~~~~~~~g~~~~~~~~~--ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~G 84 (268)
++|+ +-|..++. .|.-+.+|+-... +....+.+ ++..-+.-.|..|+=+| -.--.++.+|...-..++.-
T Consensus 108 ~dll-~kf~eiaK~RP~p~~~yDQgfv-----TpEttv~Rv~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaV 180 (354)
T COG1568 108 KDLL-EKFREIAKDRPEPLHQYDQGFV-----TPETTVSRVALMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAV 180 (354)
T ss_pred HHHH-HHHHHHHhcCCCcchhcccccc-----cccceeeeeeeeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEE
Confidence 4444 44666665 5777778843332 22223333 23333445678899999 44444555444333456999
Q ss_pred EeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc-ccceEEEEEeccccCcCHHHHHHHH----HhcC
Q psy17227 85 VEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK-ITQASIVFVNNFAFGPTVDHALKER----FQDL 159 (268)
Q Consensus 85 iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~----~r~L 159 (268)
|||++..+.+ .++.+++.| ..+++.+.-|..+ |+++. ...+|+++.. +|.....++-. ...|
T Consensus 181 vDIDERli~f------i~k~aee~g--~~~ie~~~~Dlr~-plpe~~~~kFDvfiTD----PpeTi~alk~FlgRGI~tL 247 (354)
T COG1568 181 VDIDERLIKF------IEKVAEELG--YNNIEAFVFDLRN-PLPEDLKRKFDVFITD----PPETIKALKLFLGRGIATL 247 (354)
T ss_pred EechHHHHHH------HHHHHHHhC--ccchhheeehhcc-cChHHHHhhCCeeecC----chhhHHHHHHHHhccHHHh
Confidence 9999863333 333334455 3578999989987 33332 2356666653 33333444333 3467
Q ss_pred CCC---cEEEEe
Q psy17227 160 KDG---ARIVSS 168 (268)
Q Consensus 160 kpG---G~~i~~ 168 (268)
|.- |.|-++
T Consensus 248 kg~~~aGyfgiT 259 (354)
T COG1568 248 KGEGCAGYFGIT 259 (354)
T ss_pred cCCCccceEeee
Confidence 664 666665
No 369
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=81.88 E-value=3.1 Score=37.03 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=36.5
Q ss_pred HHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHH
Q psy17227 49 DQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEM 97 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~ 97 (268)
+.+.+..|.+|+-||+|--++..++++ .+.. |..||+++..+.+.++
T Consensus 57 eam~~g~ghrivtigSGGcn~L~ylsr-~Pa~-id~VDlN~ahiAln~l 103 (414)
T COG5379 57 EAMQLGIGHRIVTIGSGGCNMLAYLSR-APAR-IDVVDLNPAHIALNRL 103 (414)
T ss_pred HHHhcCCCcEEEEecCCcchHHHHhhc-CCce-eEEEeCCHHHHHHHHH
Confidence 445678899999999998888877766 4666 9999999975554443
No 370
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=81.65 E-value=15 Score=33.24 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=58.7
Q ss_pred HHHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 47 MIDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
+....++.++.+||-.||| .|..+..+|+..|...+++++-++. +. +.++ ..|. -.++..+-.+.
T Consensus 174 ~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~--~~----~~~~----~~g~----~~vv~~~~~~~ 239 (363)
T cd08279 174 VVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPE--KL----ELAR----RFGA----THTVNASEDDA 239 (363)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHH--HH----HHHH----HhCC----eEEeCCCCccH
Confidence 3344577889999988886 5777788888888866889888764 11 1111 1221 12222211111
Q ss_pred c--cc--ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 E--HR--EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~--~~--~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
. +. .....+|+++-. . .....+.+..+.|+++|+++..
T Consensus 240 ~~~l~~~~~~~~vd~vld~-~----~~~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 240 VEAVRDLTDGRGADYAFEA-V----GRAATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred HHHHHHHcCCCCCCEEEEc-C----CChHHHHHHHHHhhcCCeEEEE
Confidence 0 00 001235555532 1 1134577889999999999865
No 371
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=81.63 E-value=4.2 Score=36.74 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=46.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc-ce
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT-QA 134 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~-d~ 134 (268)
..+++|+=||.|++..-+. ..|..-+.++|+++. +.+.++. + .+...++.+|+..+.-..-.. ++
T Consensus 3 ~~~~idLFsG~GG~~lGf~-~agf~~~~a~Eid~~------a~~ty~~---n----~~~~~~~~~di~~~~~~~~~~~~~ 68 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFE-EAGFEIVFANEIDPP------AVATYKA---N----FPHGDIILGDIKELDGEALRKSDV 68 (328)
T ss_pred CceEEeeccCCchHHHHHH-hcCCeEEEEEecCHH------HHHHHHH---h----CCCCceeechHhhcChhhccccCC
Confidence 3579999999999996554 457777899999986 2222221 1 122667788887654322111 67
Q ss_pred EEEEEecc
Q psy17227 135 SIVFVNNF 142 (268)
Q Consensus 135 dvv~~~~~ 142 (268)
|+++....
T Consensus 69 DvligGpP 76 (328)
T COG0270 69 DVLIGGPP 76 (328)
T ss_pred CEEEeCCC
Confidence 78775433
No 372
>KOG2078|consensus
Probab=81.55 E-value=0.6 Score=43.39 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=46.0
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
.++|..|.|+-||.|-+++.++++ +|. |++-|++++++.+-+.+-.++ -....+++....|+.+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK-~cr-V~aNDLNpesik~Lk~ni~lN------kv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK-GCR-VYANDLNPESIKWLKANIKLN------KVDPSAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc-CcE-EEecCCCHHHHHHHHHhcccc------ccchhheeeecccHHH
Confidence 578999999999999999998876 577 999999998666655322111 1122347777776643
No 373
>KOG1227|consensus
Probab=81.50 E-value=0.52 Score=41.85 Aligned_cols=101 Identities=20% Similarity=0.281 Sum_probs=61.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccce
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQA 134 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~ 134 (268)
.+..|+|+=.|-|.+++...-..|+..|.++|.+|..+.. .+.+++ ..+. ..+..++.||-...-+ +. .+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEa--LrR~~~----~N~V-~~r~~i~~gd~R~~~~-~~--~A 263 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEA--LRRNAE----ANNV-MDRCRITEGDNRNPKP-RL--RA 263 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHH--HHHHHH----hcch-HHHHHhhhccccccCc-cc--cc
Confidence 3578999999999999855555788889999999973322 222222 1121 2356677777765433 22 34
Q ss_pred EEEEEeccccCcCHHHHHHHHHhcCCC-CcEEE-Ee
Q psy17227 135 SIVFVNNFAFGPTVDHALKERFQDLKD-GARIV-SS 168 (268)
Q Consensus 135 dvv~~~~~~~~~~~~~~l~e~~r~Lkp-GG~~i-~~ 168 (268)
|-|....+ |.-++-..-..++||| ||-++ +.
T Consensus 264 drVnLGLl---PSse~~W~~A~k~Lk~eggsilHIH 296 (351)
T KOG1227|consen 264 DRVNLGLL---PSSEQGWPTAIKALKPEGGSILHIH 296 (351)
T ss_pred hheeeccc---cccccchHHHHHHhhhcCCcEEEEe
Confidence 44444322 4444445556678888 45355 44
No 374
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=81.41 E-value=3.4 Score=33.71 Aligned_cols=90 Identities=20% Similarity=0.199 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.|.+|.=||+|. |......++.+|+. |++.|.+..... ... ...++ ..++.+ -...
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~-V~~~d~~~~~~~------~~~---------~~~~~--~~~l~e-----ll~~ 91 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMR-VIGYDRSPKPEE------GAD---------EFGVE--YVSLDE-----LLAQ 91 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-E-EEEEESSCHHHH------HHH---------HTTEE--ESSHHH-----HHHH
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCce-eEEecccCChhh------hcc---------cccce--eeehhh-----hcch
Confidence 588999999864 44444445557886 999999984111 011 01222 223322 1224
Q ss_pred eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
+|+|++..... ++....+ .+.+..+|||..||-+
T Consensus 92 aDiv~~~~plt-~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 92 ADIVSLHLPLT-PETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp -SEEEE-SSSS-TTTTTSBSHHHHHTSTTTEEEEES
T ss_pred hhhhhhhhccc-cccceeeeeeeeeccccceEEEec
Confidence 67787654322 2333333 5677999999988854
No 375
>PRK10083 putative oxidoreductase; Provisional
Probab=81.02 E-value=13 Score=33.06 Aligned_cols=105 Identities=20% Similarity=0.150 Sum_probs=54.5
Q ss_pred HHHHcCCCCCCEEEEEcCCC-CHHHHHHHHH-hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC
Q psy17227 47 MIDQINATPDDVFVDLGSGV-GQVVLQVAAA-TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT 124 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG~-G~~~~~la~~-~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~ 124 (268)
+....++.+|++||=.|||. |..+..+|+. .|...+++++.++.-..++ + ..|.. .-+.....++.+
T Consensus 152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~------~----~~Ga~-~~i~~~~~~~~~ 220 (339)
T PRK10083 152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALA------K----ESGAD-WVINNAQEPLGE 220 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH------H----HhCCc-EEecCccccHHH
Confidence 34456788999999999642 2234445564 4877688898887411111 1 12321 001111111110
Q ss_pred CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.......++|+++- .. .-...+.+..+.|++||+++..
T Consensus 221 -~~~~~g~~~d~vid-~~----g~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 221 -ALEEKGIKPTLIID-AA----CHPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred -HHhcCCCCCCEEEE-CC----CCHHHHHHHHHHhhcCCEEEEE
Confidence 01111123445543 22 1134678889999999999975
No 376
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=80.63 E-value=19 Score=33.31 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=30.6
Q ss_pred HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
+...++.++++||=.|||. |.++..+|+..|...++.+|.++.
T Consensus 178 ~~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~ 221 (393)
T TIGR02819 178 AVTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPA 221 (393)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 3446788899988888853 445566778788876677777764
No 377
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=80.49 E-value=4.5 Score=39.99 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=55.1
Q ss_pred CEEEEEcCCCCHHHHHHHH---HhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccc--ccc
Q psy17227 57 DVFVDLGSGVGQVVLQVAA---ATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR--EKI 131 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~---~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~--~~~ 131 (268)
++|+=+||| .++..+++ ..+.. ++.||.+++ ++.. +++ .....+.||..+...- .+.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~-vvvID~d~~--~v~~----~~~---------~g~~v~~GDat~~~~L~~agi 462 (621)
T PRK03562 401 PRVIIAGFG--RFGQIVGRLLLSSGVK-MTVLDHDPD--HIET----LRK---------FGMKVFYGDATRMDLLESAGA 462 (621)
T ss_pred CcEEEEecC--hHHHHHHHHHHhCCCC-EEEEECCHH--HHHH----HHh---------cCCeEEEEeCCCHHHHHhcCC
Confidence 567777775 45444554 33555 899999986 2221 111 2467899999987632 244
Q ss_pred cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+++++++. ...++.+..+-...|.+.|.-.+++.
T Consensus 463 ~~A~~vvv~--~~d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 463 AKAEVLINA--IDDPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred CcCCEEEEE--eCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 466666552 23334444555666777888777653
No 378
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=80.21 E-value=5.7 Score=35.69 Aligned_cols=89 Identities=17% Similarity=0.119 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.|.+|.=||+|. |......++.+|.. |++.|.++.. ...+... ....++. +-...
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~~~~~--------------------~~~~~~~-~~~~~l~--e~l~~ 190 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSRSRKS--------------------WPGVQSF-AGREELS--AFLSQ 190 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCCCC--------------------CCCceee-cccccHH--HHHhc
Confidence 467898899884 65555555567887 8999987530 0011111 0111221 22235
Q ss_pred eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
+|+|++... ..++....+ .+.+..||||..||=+
T Consensus 191 aDvvv~~lP-lt~~T~~li~~~~l~~mk~ga~lIN~ 225 (312)
T PRK15469 191 TRVLINLLP-NTPETVGIINQQLLEQLPDGAYLLNL 225 (312)
T ss_pred CCEEEECCC-CCHHHHHHhHHHHHhcCCCCcEEEEC
Confidence 677776433 223344444 5678899999887743
No 379
>PRK13243 glyoxylate reductase; Reviewed
Probab=80.11 E-value=2.2 Score=38.66 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.|.+|.=||+|. |......++.+|.. |++.|.++... . .. .. .+.+ .+.. +-..+
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~~~-~------~~----~~-----~~~~--~~l~-----ell~~ 204 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMR-ILYYSRTRKPE-A------EK----EL-----GAEY--RPLE-----ELLRE 204 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCCChh-h------HH----Hc-----CCEe--cCHH-----HHHhh
Confidence 578999999976 55444455567876 99999986411 0 00 00 1111 1221 22235
Q ss_pred eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
+|+|++... ..++....+ .+.+..+|||..||-+
T Consensus 205 aDiV~l~lP-~t~~T~~~i~~~~~~~mk~ga~lIN~ 239 (333)
T PRK13243 205 SDFVSLHVP-LTKETYHMINEERLKLMKPTAILVNT 239 (333)
T ss_pred CCEEEEeCC-CChHHhhccCHHHHhcCCCCeEEEEC
Confidence 678876533 223333344 5778889999988854
No 380
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=79.70 E-value=23 Score=28.65 Aligned_cols=102 Identities=17% Similarity=0.046 Sum_probs=52.2
Q ss_pred EcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHH---HHHHHHHHHHHhccccccEEEEEcCCCCCcccc--cccceE
Q psy17227 62 LGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAE---MHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHRE--KITQAS 135 (268)
Q Consensus 62 iGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~---~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~--~~~d~d 135 (268)
||=|.=.++..+|+..+ ...+++.-+.......++ +.++++.. +..| -.-...-|+.++.-.. ....+|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L-~~~g----~~V~~~VDat~l~~~~~~~~~~FD 77 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEEL-RELG----VTVLHGVDATKLHKHFRLKNQRFD 77 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHH-hhcC----CccccCCCCCcccccccccCCcCC
Confidence 45555555666677766 445766666654223332 22333321 1111 1223445777765222 223456
Q ss_pred EEEEeccccC------cC--------HHHHHHHHHhcCCCCcEEEEe
Q psy17227 136 IVFVNNFAFG------PT--------VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 136 vv~~~~~~~~------~~--------~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.|+.|-.+.. .. +...|..+.++|+++|.+.++
T Consensus 78 rIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 78 RIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred EEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6666644322 01 122345666899999999987
No 381
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.55 E-value=15 Score=30.61 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
++++||=.|++ |+++..+++. .|.. |++++.++. ......+... ...++.++.+|+.+..
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~-V~~~~r~~~--~~~~~~~~~~--------~~~~~~~~~~Dl~~~~ 66 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQ-VCINSRNEN--KLKRMKKTLS--------KYGNIHYVVGDVSSTE 66 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCE-EEEEeCCHH--HHHHHHHHHH--------hcCCeEEEECCCCCHH
Confidence 45789999985 5555555544 4665 999998864 2222111111 1236889999998743
No 382
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=79.39 E-value=18 Score=32.76 Aligned_cols=99 Identities=20% Similarity=0.214 Sum_probs=55.0
Q ss_pred cCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--c
Q psy17227 51 INATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--H 127 (268)
Q Consensus 51 l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~ 127 (268)
..+.++.+||=.|+| .|.++..+|+..|...+++++-++.. . +.++ ..|. -.++..+-.++. +
T Consensus 183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~--~----~~~~----~~g~----~~v~~~~~~~~~~~l 248 (367)
T cd08263 183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEK--L----AKAK----ELGA----THTVNAAKEDAVAAI 248 (367)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHH--H----HHHH----HhCC----ceEecCCcccHHHHH
Confidence 345788888877775 56667777888887768889887641 1 1111 1221 112222211111 0
Q ss_pred --cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 128 --REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 128 --~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
......+|+++-. . .. ...+.+.++.|+++|+++..
T Consensus 249 ~~~~~~~~~d~vld~-v---g~-~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 249 REITGGRGVDVVVEA-L---GK-PETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred HHHhCCCCCCEEEEe-C---CC-HHHHHHHHHHHhcCCEEEEE
Confidence 0011235666632 1 11 13577888999999999975
No 383
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.37 E-value=12 Score=33.73 Aligned_cols=102 Identities=18% Similarity=0.097 Sum_probs=51.4
Q ss_pred CEEEEEcCCCCHHHHH-HHHHhCCcEEEEEeCCCChhHHHHHHHHHHHH---HHHhccc----cccEEEEEcCCCCCccc
Q psy17227 57 DVFVDLGSGVGQVVLQ-VAAATGCKICWGVEKADLPAKYAEMHTVFKRW---MQWYGKR----HGEFRLVKGDFLTEEHR 128 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~-la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~---~~~~~~~----~~~i~~~~gD~~~l~~~ 128 (268)
.+|-=||+|+=+..+. .....|.. |+..|.++.... ++...+++. ....+.. ..++++.. | +.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~-----l~ 78 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAPGAEA--ALRANVANAWPALERQGLAPGASPARLRFVA-T-----IE 78 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHH--HHHHHHHHHHHHHHHcCCChhhHHhhceecC-C-----HH
Confidence 4688889985333322 22335776 999999986332 222222211 1111110 11233221 1 11
Q ss_pred ccccceEEEEEeccccCcC-HHHHHHHHHhcCCCCcEEEEe
Q psy17227 129 EKITQASIVFVNNFAFGPT-VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 129 ~~~~d~dvv~~~~~~~~~~-~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+...++|+|+-+ ..-..+ ....+.++-+.++|+..|.++
T Consensus 79 ~av~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSn 118 (321)
T PRK07066 79 ACVADADFIQES-APEREALKLELHERISRAAKPDAIIASS 118 (321)
T ss_pred HHhcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 223467777653 322223 344567888899999866654
No 384
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=79.28 E-value=7 Score=34.27 Aligned_cols=51 Identities=27% Similarity=0.371 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHH
Q psy17227 42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYA 95 (268)
Q Consensus 42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a 95 (268)
....+++.. ...+++.|||-=+|+|..+.. |...+.. ++|+|+++.-..++
T Consensus 210 ~l~~r~i~~-~s~~~diVlDpf~GsGtt~~a-a~~~~r~-~ig~e~~~~y~~~~ 260 (302)
T COG0863 210 ALIERLIRD-YSFPGDIVLDPFAGSGTTGIA-AKNLGRR-FIGIEINPEYVEVA 260 (302)
T ss_pred HHHHHHHHh-cCCCCCEEeecCCCCChHHHH-HHHcCCc-eEEEecCHHHHHHH
Confidence 344566665 678999999999999999974 5667777 89999999744444
No 385
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=78.26 E-value=5.5 Score=36.11 Aligned_cols=87 Identities=21% Similarity=0.204 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.|++|.=||+|. |......++.+|.. |++.|.++.. . . ..+++ ..++ . +-..+
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~-V~~~d~~~~~--~----~-------------~~~~~-~~~l---~--ell~~ 198 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGAT-ITAYDAYPNK--D----L-------------DFLTY-KDSV---K--EAIKD 198 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEeCChhH--h----h-------------hhhhc-cCCH---H--HHHhc
Confidence 567899999987 33333344456776 9999998630 0 0 01111 1121 1 22235
Q ss_pred eEEEEEeccccCcCHHH-HHHHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTVDH-ALKERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~-~l~e~~r~LkpGG~~i~~ 168 (268)
+|+|++..... ++... .-.+.+..+|||..||-+
T Consensus 199 aDiVil~lP~t-~~t~~li~~~~l~~mk~gavlIN~ 233 (330)
T PRK12480 199 ADIISLHVPAN-KESYHLFDKAMFDHVKKGAILVNA 233 (330)
T ss_pred CCEEEEeCCCc-HHHHHHHhHHHHhcCCCCcEEEEc
Confidence 67777643322 22222 236777889999988854
No 386
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=78.24 E-value=7.7 Score=34.95 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=60.4
Q ss_pred EEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccceEE
Q psy17227 58 VFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASI 136 (268)
Q Consensus 58 ~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d~dv 136 (268)
+|.=||-|. |.-+..+|.-.|.. |+-+|+|.+ ++.. +.. .+ ..+++....+..++. +....+|+
T Consensus 170 kv~iiGGGvvgtnaAkiA~glgA~-Vtild~n~~--rl~~----ldd---~f---~~rv~~~~st~~~ie--e~v~~aDl 234 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLGAD-VTILDLNID--RLRQ----LDD---LF---GGRVHTLYSTPSNIE--EAVKKADL 234 (371)
T ss_pred cEEEECCccccchHHHHHhccCCe-eEEEecCHH--HHhh----hhH---hh---CceeEEEEcCHHHHH--HHhhhccE
Confidence 477788886 55566667666776 999999975 2221 111 11 236777776665544 44456777
Q ss_pred EEEeccccC-cCHHHHHHHHHhcCCCCcEEE
Q psy17227 137 VFVNNFAFG-PTVDHALKERFQDLKDGARIV 166 (268)
Q Consensus 137 v~~~~~~~~-~~~~~~l~e~~r~LkpGG~~i 166 (268)
++..-..-. ..+.-..+++.+.+|||+.++
T Consensus 235 vIgaVLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 235 VIGAVLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred EEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence 664333322 346667899999999999998
No 387
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=78.03 E-value=32 Score=29.23 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=42.8
Q ss_pred HHHHHHcCCC-CCCEEEEEcCCCCH----HHHHHHH-HhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEE
Q psy17227 45 SRMIDQINAT-PDDVFVDLGSGVGQ----VVLQVAA-ATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLV 118 (268)
Q Consensus 45 ~~ll~~l~~~-~~~~vLDiGCG~G~----~~~~la~-~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~ 118 (268)
.+++..|--. .-..++++.|+-|. +++.+|. +.|.+ ++.|-.++. ... ...+.+...+.. ..++|+
T Consensus 30 aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR-~vCIvp~~~--~~~----~~~~~l~~~~~~-~~vEfv 101 (218)
T PF07279_consen 30 AEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGR-HVCIVPDEQ--SLS----EYKKALGEAGLS-DVVEFV 101 (218)
T ss_pred HHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCe-EEEEcCChh--hHH----HHHHHHhhcccc-ccceEE
Confidence 4455444222 23568999776442 3333333 34554 788888764 222 222223334432 357999
Q ss_pred EcCCC-C-CcccccccceEEEEEe
Q psy17227 119 KGDFL-T-EEHREKITQASIVFVN 140 (268)
Q Consensus 119 ~gD~~-~-l~~~~~~~d~dvv~~~ 140 (268)
.|+.. + ++ ....+|.+++.
T Consensus 102 vg~~~e~~~~---~~~~iDF~vVD 122 (218)
T PF07279_consen 102 VGEAPEEVMP---GLKGIDFVVVD 122 (218)
T ss_pred ecCCHHHHHh---hccCCCEEEEe
Confidence 99853 2 22 22235556654
No 388
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=77.97 E-value=5.9 Score=36.11 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=33.8
Q ss_pred HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
....++++|++||=.|||. |.++..+|+..|..+|+++|.++.
T Consensus 178 ~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~ 221 (368)
T TIGR02818 178 LNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPA 221 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 3456788999999999864 556677888888855999999875
No 389
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=77.75 E-value=16 Score=31.89 Aligned_cols=104 Identities=16% Similarity=0.116 Sum_probs=58.2
Q ss_pred CEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhcc-ccccEEEEEcCCCC-Cc--cccccc
Q psy17227 57 DVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGK-RHGEFRLVKGDFLT-EE--HREKIT 132 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~i~~~~gD~~~-l~--~~~~~~ 132 (268)
..|+.||||.=.-...+....+. .++-||..+. ++.-++.+. ..+. ...+.+++..|+.+ +. +....+
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~-~~~EvD~P~v---~~~K~~~l~----~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gf 154 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGT-RVFEVDQPAV---LAFKEKVLA----ELGAEPPAHRRAVPVDLRQDWPAALAAAGF 154 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCC-eEEECCChHH---HHHHHHHHH----HcCCCCCCceEEeccCchhhHHHHHHhCCC
Confidence 46999999988777665322122 3666666542 221112222 2221 23578999999872 11 111112
Q ss_pred ---ceEEEEEecc-c-cCc-CHHHHHHHHHhcCCCCcEEEEe
Q psy17227 133 ---QASIVFVNNF-A-FGP-TVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 133 ---d~dvv~~~~~-~-~~~-~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
..++++++.+ + +.+ +....+..+.+...||+.+++.
T Consensus 155 d~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d 196 (260)
T TIGR00027 155 DPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFD 196 (260)
T ss_pred CCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 2346666655 2 333 3555677777777799998873
No 390
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=77.35 E-value=15 Score=32.76 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=28.2
Q ss_pred CCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCC
Q psy17227 52 NATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKAD 89 (268)
Q Consensus 52 ~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~ 89 (268)
...++.+||-.|||. |.++..+|+..|...+++++-++
T Consensus 160 ~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~ 198 (341)
T cd05281 160 GDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNP 198 (341)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence 446788888888765 66778888888885578886554
No 391
>PRK06487 glycerate dehydrogenase; Provisional
Probab=77.10 E-value=4.3 Score=36.55 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.|.+|.=||+|. |.-....++.+|.+ |++.|.+.. ..... .. .+.+-...
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~~~~---------------------~~~~~-----~~--~l~ell~~ 197 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQLPGR---------------------PARPD-----RL--PLDELLPQ 197 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECCCCC---------------------ccccc-----cc--CHHHHHHh
Confidence 467899999976 55555556667886 899987632 00111 11 12222235
Q ss_pred eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
+|+|++... ..++-...+ .+.+..||||..||=+
T Consensus 198 sDiv~l~lP-lt~~T~~li~~~~~~~mk~ga~lIN~ 232 (317)
T PRK06487 198 VDALTLHCP-LTEHTRHLIGARELALMKPGALLINT 232 (317)
T ss_pred CCEEEECCC-CChHHhcCcCHHHHhcCCCCeEEEEC
Confidence 678887533 223334444 6677899999988854
No 392
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=77.08 E-value=4.7 Score=36.37 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=34.0
Q ss_pred HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
...++++|++||=.|||. |..+..+|+..|.. ++++|.++.
T Consensus 160 ~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~-vi~~~~~~~ 201 (349)
T TIGR03201 160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPE 201 (349)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEcCCHH
Confidence 446788999999999976 77778888888886 999999875
No 393
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=76.76 E-value=16 Score=33.55 Aligned_cols=94 Identities=16% Similarity=0.237 Sum_probs=51.9
Q ss_pred CCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC-cccccc
Q psy17227 54 TPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE-EHREKI 131 (268)
Q Consensus 54 ~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l-~~~~~~ 131 (268)
++|++||=.|||. |.++..+|+..|.. +++++.++. ... +.+ +..|.. .++. ..+. ...+..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~-Vi~~~~~~~--~~~---~~a----~~lGa~----~~i~--~~~~~~v~~~~ 240 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLR-VTVISRSSE--KER---EAI----DRLGAD----SFLV--TTDSQKMKEAV 240 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCe-EEEEeCChH--HhH---HHH----HhCCCc----EEEc--CcCHHHHHHhh
Confidence 5799999998853 55567778888886 899988753 111 111 122321 1111 1110 010111
Q ss_pred cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
..+|+++-. . .....+....+.+++||+++..
T Consensus 241 ~~~D~vid~-~----G~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 241 GTMDFIIDT-V----SAEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CCCcEEEEC-C----CcHHHHHHHHHhhcCCCEEEEE
Confidence 124566531 1 1234677888999999999875
No 394
>PLN02702 L-idonate 5-dehydrogenase
Probab=76.74 E-value=20 Score=32.31 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=32.2
Q ss_pred HHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 49 DQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
...++.++.+||=+|+| .|.++..+|+..|+..++.++.++.
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~ 217 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDE 217 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 45677889999888875 4666777888888876888888753
No 395
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=76.41 E-value=39 Score=27.32 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=69.6
Q ss_pred CCcccCcHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccc
Q psy17227 34 FVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG 113 (268)
Q Consensus 34 ~~~g~~~~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 113 (268)
.+|.+.+...+.+.+... ..++.+|+=|||=+-...+.- ...+...++-+|++.. .+. . .+
T Consensus 5 fwYs~~T~~~l~~~l~~~-~~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~R---F~~-----------~---~~ 65 (162)
T PF10237_consen 5 FWYSDETAEFLARELLDG-ALDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRR---FEQ-----------F---GG 65 (162)
T ss_pred cccCHHHHHHHHHHHHHh-cCCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecch---HHh-----------c---CC
Confidence 455554444444444332 245678999999776665532 1123335899999972 221 1 12
Q ss_pred cEEEEEcCCCCCc-cccc-ccceEEEEEeccccCcCHHHHHHHHHhc-CCCCcEEEEe
Q psy17227 114 EFRLVKGDFLTEE-HREK-ITQASIVFVNNFAFGPTVDHALKERFQD-LKDGARIVSS 168 (268)
Q Consensus 114 ~i~~~~gD~~~l~-~~~~-~~d~dvv~~~~~~~~~~~~~~l~e~~r~-LkpGG~~i~~ 168 (268)
+ .|+.=|..+.. ++.. ...+|+|++.......+......+..|. +|+++.++..
T Consensus 66 ~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 66 D-EFVFYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred c-ceEECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 4 67777776532 2211 1367899998777667766667777765 5888888865
No 396
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=75.95 E-value=3.7 Score=37.27 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHH--------hC--------CcEEEEEeCCCChhHHHHHHHHHHHHH
Q psy17227 42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAA--------TG--------CKICWGVEKADLPAKYAEMHTVFKRWM 105 (268)
Q Consensus 42 ~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~--------~~--------~~~v~GiD~s~~~~~~a~~~~~~~~~~ 105 (268)
+.+..+.........-+|+|+||..|..++.+... .. .-.|+--|+-.. .....-+.+....
T Consensus 3 ~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~N--DFn~lF~~l~~~~ 80 (334)
T PF03492_consen 3 EAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSN--DFNTLFKSLPSFQ 80 (334)
T ss_dssp HHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS---HHHHHHCHHHHH
T ss_pred HHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCc--cHHHHHHhChhhh
Confidence 34555554444555678999999999998765521 11 014778888654 3332111111100
Q ss_pred HHhcccccc--EEEEEcCCCCCcccccccceEEEEEeccccC
Q psy17227 106 QWYGKRHGE--FRLVKGDFLTEEHREKITQASIVFVNNFAFG 145 (268)
Q Consensus 106 ~~~~~~~~~--i~~~~gD~~~l~~~~~~~d~dvv~~~~~~~~ 145 (268)
.... ...+ +.-+-|.+.+--||++ ..+++++...+||
T Consensus 81 ~~~~-~~~~~f~~gvpgSFy~rLfP~~--Svh~~~Ss~alHW 119 (334)
T PF03492_consen 81 QSLK-KFRNYFVSGVPGSFYGRLFPSN--SVHFGHSSYALHW 119 (334)
T ss_dssp HHHH-HTTSEEEEEEES-TTS--S-TT---EEEEEEES-TTB
T ss_pred hccC-CCceEEEEecCchhhhccCCCC--ceEEEEEechhhh
Confidence 0000 0122 4556788887555555 3556665544443
No 397
>PRK06932 glycerate dehydrogenase; Provisional
Probab=75.95 E-value=5.5 Score=35.83 Aligned_cols=85 Identities=22% Similarity=0.252 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.|.+|.=||+|. |.-....++.+|++ |++.|.++. . .... ...+ +.+-...
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~~~-----~-----------------~~~~---~~~~--l~ell~~ 197 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHKGA-----S-----------------VCRE---GYTP--FEEVLKQ 197 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCCcc-----c-----------------cccc---ccCC--HHHHHHh
Confidence 478999999976 65555566668887 899876431 0 0000 0111 2222235
Q ss_pred eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
+|+|+++.. ..++-...+ .+.+..+|||..||=+
T Consensus 198 sDiv~l~~P-lt~~T~~li~~~~l~~mk~ga~lIN~ 232 (314)
T PRK06932 198 ADIVTLHCP-LTETTQNLINAETLALMKPTAFLINT 232 (314)
T ss_pred CCEEEEcCC-CChHHhcccCHHHHHhCCCCeEEEEC
Confidence 688887533 223334444 6777899999999854
No 398
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=75.92 E-value=21 Score=31.91 Aligned_cols=99 Identities=16% Similarity=0.174 Sum_probs=56.2
Q ss_pred HHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227 49 DQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH 127 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~ 127 (268)
...++.++.+||=.|+| .|.++..+|+..|...|++++.++. ..+ .++ ..|. . .++ |..+..+
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~--~~~----~~~----~~ga---~-~~i--~~~~~~~ 229 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEA--RRE----LAE----ELGA---T-IVL--DPTEVDV 229 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH--HHH----HHH----HhCC---C-EEE--CCCccCH
Confidence 56678889998888864 3555666778888855899988764 111 111 1221 1 111 1211111
Q ss_pred cc------cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 128 RE------KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 128 ~~------~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+ +...+|+++-... ....+...++.|++||+++..
T Consensus 230 ~~~l~~~~~~~~~d~vid~~g-----~~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 230 VAEVRKLTGGGGVDVSFDCAG-----VQATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred HHHHHHHhCCCCCCEEEECCC-----CHHHHHHHHHhccCCCEEEEE
Confidence 00 0112566653211 134677888999999999875
No 399
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=75.16 E-value=11 Score=34.99 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=18.5
Q ss_pred cCcCH---HHHHHHHHhcCCCCcEEEEe
Q psy17227 144 FGPTV---DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 144 ~~~~~---~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.||+ ..+.+.+..+||+|-.++.-
T Consensus 100 ~~pDls~v~~aa~sIa~~L~kG~LVIlE 127 (436)
T COG0677 100 REPDLSYVESAARSIAPVLKKGDLVILE 127 (436)
T ss_pred CCCChHHHHHHHHHHHHhcCCCCEEEEe
Confidence 45663 45567888999999888874
No 400
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=75.09 E-value=16 Score=32.53 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=51.9
Q ss_pred HHHHHcCCC-CCCEEEEEcCCCCH-HHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCC
Q psy17227 46 RMIDQINAT-PDDVFVDLGSGVGQ-VVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFL 123 (268)
Q Consensus 46 ~ll~~l~~~-~~~~vLDiGCG~G~-~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~ 123 (268)
..++..+.. .+.+|+=||+|.=+ .+...++..|+. |+.+|.++. ..++ ++ ..| .+++ ++.
T Consensus 141 ~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~-V~v~~r~~~--~~~~----~~----~~G-----~~~~--~~~ 202 (296)
T PRK08306 141 MAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGAN-VTVGARKSA--HLAR----IT----EMG-----LSPF--HLS 202 (296)
T ss_pred HHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCE-EEEEECCHH--HHHH----HH----HcC-----Ceee--cHH
Confidence 344444443 58899999997532 233344556874 999999964 1111 11 112 2222 111
Q ss_pred CCcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227 124 TEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 124 ~l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~ 167 (268)
+++ +....+|+|+.. + |. .-.-+++.+.++||+.++-
T Consensus 203 ~l~--~~l~~aDiVI~t-~---p~-~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 203 ELA--EEVGKIDIIFNT-I---PA-LVLTKEVLSKMPPEALIID 239 (296)
T ss_pred HHH--HHhCCCCEEEEC-C---Ch-hhhhHHHHHcCCCCcEEEE
Confidence 221 222356777753 2 11 1123567788999988874
No 401
>PRK06128 oxidoreductase; Provisional
Probab=74.98 E-value=48 Score=29.05 Aligned_cols=63 Identities=14% Similarity=-0.008 Sum_probs=35.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHh---CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAAT---GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~---~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
.++++|=.|+ +|+++..+++.+ |.. |+.+..++.........+.++ .. ..++.++.+|+.+..
T Consensus 54 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~-V~i~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~Dl~~~~ 119 (300)
T PRK06128 54 QGRKALITGA-DSGIGRATAIAFAREGAD-IALNYLPEEEQDAAEVVQLIQ----AE---GRKAVALPGDLKDEA 119 (300)
T ss_pred CCCEEEEecC-CCcHHHHHHHHHHHcCCE-EEEEeCCcchHHHHHHHHHHH----Hc---CCeEEEEecCCCCHH
Confidence 4678999995 566666666543 555 666666543212211111111 11 236788999998753
No 402
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=74.57 E-value=36 Score=30.77 Aligned_cols=96 Identities=23% Similarity=0.204 Sum_probs=51.2
Q ss_pred CCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227 53 ATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI 131 (268)
Q Consensus 53 ~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~ 131 (268)
.++|++||=.|+| .|.++..+|+..|.. ++.++.+++ +... +. +..|. ...+...+.. ......
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~-vi~~~~~~~--~~~~----~~---~~~Ga---~~~i~~~~~~--~~~~~~ 242 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHH-VTVISSSDK--KREE----AL---EHLGA---DDYLVSSDAA--EMQEAA 242 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCe-EEEEeCCHH--HHHH----HH---HhcCC---cEEecCCChH--HHHHhc
Confidence 3688999888764 355567778888876 788887763 1111 11 11232 1111111100 011111
Q ss_pred cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 132 TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
..+|+++-. . .....+....+.|++||+++..
T Consensus 243 ~~~D~vid~-~----g~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 243 DSLDYIIDT-V----PVFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred CCCcEEEEC-C----CchHHHHHHHHHhccCCEEEEE
Confidence 134555531 1 1124677788999999999975
No 403
>PRK07574 formate dehydrogenase; Provisional
Probab=74.41 E-value=12 Score=34.76 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.|++|.=||+|. |......++.+|.. |++.|.++....... ...++. ..+.. +-...
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~-V~~~dr~~~~~~~~~---------------~~g~~~-~~~l~-----ell~~ 248 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVK-LHYTDRHRLPEEVEQ---------------ELGLTY-HVSFD-----SLVSV 248 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCCCCchhhHh---------------hcCcee-cCCHH-----HHhhc
Confidence 467888888875 55544445557886 999998863111110 012221 11221 22235
Q ss_pred eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
+|+|++... ..++....+ .+.+..||||..||-+
T Consensus 249 aDvV~l~lP-lt~~T~~li~~~~l~~mk~ga~lIN~ 283 (385)
T PRK07574 249 CDVVTIHCP-LHPETEHLFDADVLSRMKRGSYLVNT 283 (385)
T ss_pred CCEEEEcCC-CCHHHHHHhCHHHHhcCCCCcEEEEC
Confidence 678887543 223444445 5677899999888854
No 404
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=74.11 E-value=20 Score=32.66 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=31.8
Q ss_pred HHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 49 DQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
...++.+|++||=.||| .|..+..+|+..|..+++++|.++.
T Consensus 170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~ 212 (375)
T cd08282 170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPE 212 (375)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 55677889999888886 3666777788888755888888763
No 405
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=73.55 E-value=2.6 Score=32.55 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=35.3
Q ss_pred cEEEEEcCCCC-CcccccccceEEEEEecccc--CcCH--HHHHHHHHhcCCCCcEEEEe
Q psy17227 114 EFRLVKGDFLT-EEHREKITQASIVFVNNFAF--GPTV--DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 114 ~i~~~~gD~~~-l~~~~~~~d~dvv~~~~~~~--~~~~--~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+++..||+.+ ++--+ ..+|+++...+.- .|++ ...++.+++.++|||.++++
T Consensus 32 ~L~L~~gDa~~~l~~l~--~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty 89 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLD--ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATY 89 (124)
T ss_dssp EEEEEES-HHHHHHHB---T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES
T ss_pred EEEEEEcHHHHHHHhCc--ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEe
Confidence 67888999865 33111 4678999887643 2332 56789999999999999985
No 406
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=72.75 E-value=7.4 Score=34.33 Aligned_cols=34 Identities=38% Similarity=0.361 Sum_probs=21.4
Q ss_pred CEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCCh
Q psy17227 57 DVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLP 91 (268)
Q Consensus 57 ~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~ 91 (268)
.+|.=||||+ |......+...|.. |+.+|.++..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~-V~l~d~~~~~ 38 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYD-VTIVDVSEEI 38 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCe-EEEEeCCHHH
Confidence 3577789985 33222223335665 9999999863
No 407
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=72.59 E-value=24 Score=31.11 Aligned_cols=35 Identities=14% Similarity=0.014 Sum_probs=21.1
Q ss_pred cceEEEEEeccccCcC-HHHHHHHHHhcCCCCcEEEE
Q psy17227 132 TQASIVFVNNFAFGPT-VDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~~-~~~~l~e~~r~LkpGG~~i~ 167 (268)
.++|+|+.... -.++ ....+.++...++|+..+++
T Consensus 82 ~~aD~Vieav~-e~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 82 RDADFIIEAIV-ESEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred CCCCEEEEcCc-cCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 35677775322 2233 33446777788899887764
No 408
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=72.38 E-value=36 Score=30.19 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=55.5
Q ss_pred HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-
Q psy17227 49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE- 126 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~- 126 (268)
..+.+.++++||=.|||. |..+..+|+..|.. ++.++.++. ..+ .++ +.|. -.++...-.++.
T Consensus 157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~-vi~~~~~~~--~~~----~~~----~~g~----~~~i~~~~~~~~~ 221 (333)
T cd08296 157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFR-TVAISRGSD--KAD----LAR----KLGA----HHYIDTSKEDVAE 221 (333)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCe-EEEEeCChH--HHH----HHH----HcCC----cEEecCCCccHHH
Confidence 445788899999999643 45566677777876 899988864 211 111 2221 112211111111
Q ss_pred -ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 -HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 -~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
... ...+|+++.. . .....+....+.|+++|+++..
T Consensus 222 ~~~~-~~~~d~vi~~-~----g~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 222 ALQE-LGGAKLILAT-A----PNAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred HHHh-cCCCCEEEEC-C----CchHHHHHHHHHcccCCEEEEE
Confidence 000 1124566531 1 1134677888999999999864
No 409
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.29 E-value=24 Score=31.01 Aligned_cols=98 Identities=12% Similarity=0.044 Sum_probs=47.0
Q ss_pred EEEEEcCCCCHH--HHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccc------------cccEEEEEcCCC
Q psy17227 58 VFVDLGSGVGQV--VLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKR------------HGEFRLVKGDFL 123 (268)
Q Consensus 58 ~vLDiGCG~G~~--~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~------------~~~i~~~~gD~~ 123 (268)
+|.=||+|.=+. +..++ ..|.. |+.+|.++. .++++.+...... ..+.. ..++++. .|..
T Consensus 3 ~V~VIG~G~mG~~iA~~la-~~G~~-V~~~d~~~~--~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 76 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFA-VSGFQ-TTLVDIKQE--QLESAQQEIASIF-EQGVARGKLTEAARQAALARLSYS-LDLK 76 (288)
T ss_pred EEEEECccHHHHHHHHHHH-hCCCc-EEEEeCCHH--HHHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHhCeEEe-CcHH
Confidence 466778864222 22222 34666 999999986 3333332222110 01100 0123322 2221
Q ss_pred CCcccccccceEEEEEeccccCcC-HHHHHHHHHhcCCCCcEEEE
Q psy17227 124 TEEHREKITQASIVFVNNFAFGPT-VDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 124 ~l~~~~~~~d~dvv~~~~~~~~~~-~~~~l~e~~r~LkpGG~~i~ 167 (268)
+...++|+|+.... -..+ ....+.++.+.++|+..+++
T Consensus 77 -----~~~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 77 -----AAVADADLVIEAVP-EKLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred -----HhhcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 12245677775322 1111 23446777788899887754
No 410
>KOG2782|consensus
Probab=72.23 E-value=3.9 Score=34.88 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHH
Q psy17227 41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE 96 (268)
Q Consensus 41 ~~~~~~ll~~l~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~ 96 (268)
+-.+..++.-+...+|.+++|.--|.|+.+..+.++.+..+++++|.+|.+-++|.
T Consensus 29 PVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~ 84 (303)
T KOG2782|consen 29 PVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAH 84 (303)
T ss_pred ceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHH
Confidence 34556788888889999999999999999999988877777899999997666665
No 411
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=72.09 E-value=35 Score=30.45 Aligned_cols=97 Identities=20% Similarity=0.183 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--ccc
Q psy17227 53 ATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HRE 129 (268)
Q Consensus 53 ~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~~ 129 (268)
+.++.+||-.||| .|..+..+|+..|...|+.++.++. +. ..++ ..|. . .++..+-.... +..
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~--~~----~~~~----~~g~---~-~~~~~~~~~~~~~~~~ 238 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEA--KL----EAAK----AAGA---D-VVVNGSDPDAAKRIIK 238 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHH--HH----HHHH----HhCC---c-EEecCCCccHHHHHHH
Confidence 3478889988876 4666777788889866889987764 11 1111 1221 1 12221111110 000
Q ss_pred cc-cceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 130 KI-TQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 130 ~~-~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.. ..+|+++-. . .....+.+..+.|+++|+++..
T Consensus 239 ~~~~~~d~vid~-~----g~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 239 AAGGGVDAVIDF-V----NNSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred HhCCCCcEEEEC-C----CCHHHHHHHHHHhhcCCeEEEE
Confidence 00 035566531 1 1134578889999999999965
No 412
>PRK07806 short chain dehydrogenase; Provisional
Probab=72.03 E-value=52 Score=27.55 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
++.++|-.|+ +|+++..+++. .|.. |+++..+.. .........++ .. ..++.++.+|+.+..
T Consensus 5 ~~k~vlItGa-sggiG~~l~~~l~~~G~~-V~~~~r~~~-~~~~~~~~~l~----~~---~~~~~~~~~D~~~~~ 69 (248)
T PRK07806 5 PGKTALVTGS-SRGIGADTAKILAGAGAH-VVVNYRQKA-PRANKVVAEIE----AA---GGRASAVGADLTDEE 69 (248)
T ss_pred CCcEEEEECC-CCcHHHHHHHHHHHCCCE-EEEEeCCch-HhHHHHHHHHH----hc---CCceEEEEcCCCCHH
Confidence 3568999996 35565555543 3554 888877642 11111111111 11 236888999998753
No 413
>PRK08324 short chain dehydrogenase; Validated
Probab=72.01 E-value=21 Score=35.68 Aligned_cols=60 Identities=17% Similarity=0.067 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHH---HhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAA---ATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~---~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
+|+++|=.|++ |+++..+++ ..|.. |+.+|.++. ......+. .+.. .++.++.+|+.+..
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~-Vvl~~r~~~--~~~~~~~~-------l~~~-~~v~~v~~Dvtd~~ 483 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGAC-VVLADLDEE--AAEAAAAE-------LGGP-DRALGVACDVTDEA 483 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCE-EEEEeCCHH--HHHHHHHH-------Hhcc-CcEEEEEecCCCHH
Confidence 57889999873 445444443 34664 999999874 22221111 1111 47889999998743
No 414
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=71.64 E-value=54 Score=29.39 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=28.7
Q ss_pred HHcCC-CCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 49 DQINA-TPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 49 ~~l~~-~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
..+.. .++.+||=.|+|. |.++..+|+..|..+|++++.++.
T Consensus 170 ~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~ 213 (361)
T cd08231 170 DRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPE 213 (361)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 34444 4888888888642 444566777788845899988763
No 415
>PRK06436 glycerate dehydrogenase; Provisional
Probab=71.48 E-value=6.7 Score=35.10 Aligned_cols=86 Identities=13% Similarity=0.196 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.|.+|.=||+|. |......++.+|.. |++.|.+... ..+.....+ + .+-...
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~~-V~~~~r~~~~---------------------~~~~~~~~~---l--~ell~~ 173 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGMN-IYAYTRSYVN---------------------DGISSIYME---P--EDIMKK 173 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCCCcc---------------------cCcccccCC---H--HHHHhh
Confidence 478899999985 65544556667886 9999987420 011100111 1 122235
Q ss_pred eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
+|+|++... ..++....+ .+.+..+|||..||-+
T Consensus 174 aDiv~~~lp-~t~~T~~li~~~~l~~mk~ga~lIN~ 208 (303)
T PRK06436 174 SDFVLISLP-LTDETRGMINSKMLSLFRKGLAIINV 208 (303)
T ss_pred CCEEEECCC-CCchhhcCcCHHHHhcCCCCeEEEEC
Confidence 678876433 223333333 5667889999887743
No 416
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=71.45 E-value=41 Score=29.85 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=56.0
Q ss_pred HHHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-
Q psy17227 48 IDQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT- 124 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~- 124 (268)
+....+.++.+||=.|+ +.|..++.+|+..|+. +++++-++ ... .++ ..|. . .+...+-..
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~-vi~~~~~~---~~~----~~~----~~g~---~-~~~~~~~~~~ 233 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAI-VIAVAGAA---KEE----AVR----ALGA---D-TVILRDAPLL 233 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCE-EEEEeCch---hhH----HHH----hcCC---e-EEEeCCCccH
Confidence 34557889999999997 5677778888888887 88887543 111 111 1221 1 122111000
Q ss_pred --CcccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 --EEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 --l~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.... ....+|+++-... ...+....+.|+++|+++..
T Consensus 234 ~~~~~~-~~~~~d~vi~~~g------~~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 234 ADAKAL-GGEPVDVVADVVG------GPLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred HHHHhh-CCCCCcEEEecCC------HHHHHHHHHHhccCCEEEEe
Confidence 0000 1123566663211 23577888999999999864
No 417
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=70.77 E-value=30 Score=31.31 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=30.7
Q ss_pred HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
....++.++.+||=.|||. |..+..+|+..|...+++++.++.
T Consensus 176 ~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~ 219 (365)
T cd05279 176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKD 219 (365)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 3455788899998888742 444566677788766888887764
No 418
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=70.52 E-value=10 Score=35.48 Aligned_cols=87 Identities=21% Similarity=0.311 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.|.+|.=||+|. |......++.+|.+ |+|.|.++. . ....+.. ..++ . +-...
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~fGm~-V~~~d~~~~------~-------------~~~~~~~-~~~l---~--ell~~ 203 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLGMR-VYFYDIEDK------L-------------PLGNARQ-VGSL---E--ELLAQ 203 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCCcc------c-------------ccCCcee-cCCH---H--HHHhh
Confidence 477899999987 66555566668887 999997642 0 0012221 1122 1 22234
Q ss_pred eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
+|+|+++.. ..++-...+ .+.+..+|||..||=+
T Consensus 204 sDiVslh~P-lt~~T~~li~~~~l~~mk~ga~lIN~ 238 (409)
T PRK11790 204 SDVVSLHVP-ETPSTKNMIGAEELALMKPGAILINA 238 (409)
T ss_pred CCEEEEcCC-CChHHhhccCHHHHhcCCCCeEEEEC
Confidence 678887533 223334444 5667899999888843
No 419
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=70.36 E-value=3.7 Score=37.99 Aligned_cols=55 Identities=11% Similarity=0.156 Sum_probs=37.9
Q ss_pred ccEEEEEcCCCCCc--ccccccceEEEEEecccc--CcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 113 GEFRLVKGDFLTEE--HREKITQASIVFVNNFAF--GPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 113 ~~i~~~~gD~~~l~--~~~~~~d~dvv~~~~~~~--~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
++++++.+++.+.- .++.+++. +++++..=| .......+.++.+.++|||+++.-
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~-~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDR-FVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeE-EEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 68999999998743 22444444 455554422 233566678899999999999985
No 420
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=70.33 E-value=47 Score=31.00 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=50.9
Q ss_pred EEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc-c-cccc
Q psy17227 58 VFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH-R-EKIT 132 (268)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~-~-~~~~ 132 (268)
+|+=+|| |.++..+++. .|.. ++.+|.++. .+. .+++ ...+.++.||..+... . .+..
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~-v~vid~~~~--~~~----~~~~--------~~~~~~~~gd~~~~~~l~~~~~~ 64 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENND-VTVIDTDEE--RLR----RLQD--------RLDVRTVVGNGSSPDVLREAGAE 64 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCc-EEEEECCHH--HHH----HHHh--------hcCEEEEEeCCCCHHHHHHcCCC
Confidence 4566665 7888888774 3554 899999874 211 1110 1358899999986431 1 1233
Q ss_pred ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEE
Q psy17227 133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~ 167 (268)
++|++++. ....+....+....+.+.|.-.+++
T Consensus 65 ~a~~vi~~--~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 65 DADLLIAV--TDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred cCCEEEEe--cCChHHHHHHHHHHHHhcCCCeEEE
Confidence 56666553 1223344445555666645444443
No 421
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=70.20 E-value=29 Score=32.41 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=49.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHHh---CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc--ccc
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAAT---GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH--REK 130 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~---~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~--~~~ 130 (268)
.++++=+|| |.++..+++.. +.. ++.+|.+++ .+.+ +++ ....+.++.||..+... ..+
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~-v~vid~~~~--~~~~----~~~-------~~~~~~~i~gd~~~~~~L~~~~ 294 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYS-VKLIERDPE--RAEE----LAE-------ELPNTLVLHGDGTDQELLEEEG 294 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCe-EEEEECCHH--HHHH----HHH-------HCCCCeEEECCCCCHHHHHhcC
Confidence 456777776 77777776654 444 999999985 2221 111 11357789999987531 122
Q ss_pred ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEE
Q psy17227 131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARI 165 (268)
Q Consensus 131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~ 165 (268)
..++|++++. ....+..-......+.+.+.-.+
T Consensus 295 ~~~a~~vi~~--~~~~~~n~~~~~~~~~~~~~~ii 327 (453)
T PRK09496 295 IDEADAFIAL--TNDDEANILSSLLAKRLGAKKVI 327 (453)
T ss_pred CccCCEEEEC--CCCcHHHHHHHHHHHHhCCCeEE
Confidence 3355666542 12223333333444666554333
No 422
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=70.01 E-value=1.6 Score=31.82 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=11.4
Q ss_pred EEEEcCCCCHHHHH
Q psy17227 59 FVDLGSGVGQVVLQ 72 (268)
Q Consensus 59 vLDiGCG~G~~~~~ 72 (268)
=+|||||.|+..-.
T Consensus 6 NIDIGcG~GNTmda 19 (124)
T PF07101_consen 6 NIDIGCGAGNTMDA 19 (124)
T ss_pred ccccccCCCcchhh
Confidence 47999999998653
No 423
>PLN02928 oxidoreductase family protein
Probab=69.99 E-value=13 Score=33.91 Aligned_cols=99 Identities=20% Similarity=0.144 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccE-EEE--EcCCCCCccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEF-RLV--KGDFLTEEHREK 130 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i-~~~--~gD~~~l~~~~~ 130 (268)
.|.+|.=||.|. |......++.+|.. |++.|.+....... ..+.....+ .+. .+...++. +-
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~~-V~~~dr~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~L~--el 223 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGVK-LLATRRSWTSEPED-----------GLLIPNGDVDDLVDEKGGHEDIY--EF 223 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECCCCChhhhh-----------hhccccccccccccccCcccCHH--HH
Confidence 477899999986 66555556667886 99999874210000 000000010 000 11222222 22
Q ss_pred ccceEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 131 ITQASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 131 ~~d~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
...+|+|++..... ++-...+ .+.+..||||..||=+
T Consensus 224 l~~aDiVvl~lPlt-~~T~~li~~~~l~~Mk~ga~lINv 261 (347)
T PLN02928 224 AGEADIVVLCCTLT-KETAGIVNDEFLSSMKKGALLVNI 261 (347)
T ss_pred HhhCCEEEECCCCC-hHhhcccCHHHHhcCCCCeEEEEC
Confidence 23568888754322 3333333 6778999999888853
No 424
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=68.86 E-value=32 Score=30.56 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=52.7
Q ss_pred CCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--cc
Q psy17227 52 NATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE--HR 128 (268)
Q Consensus 52 ~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~--~~ 128 (268)
...++.+||-.||| .|..++.+|+..|...+++++-++. ... .++ ..|. . .++...-.++. ..
T Consensus 158 ~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~--~~~----~~~----~~g~---~-~~v~~~~~~~~~~l~ 223 (340)
T TIGR00692 158 GPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEY--RLE----LAK----KMGA---T-YVVNPFKEDVVKEVA 223 (340)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH--HHH----HHH----HhCC---c-EEEcccccCHHHHHH
Confidence 35678888888875 4666777888888755788866652 111 111 1221 1 11111111110 00
Q ss_pred --ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 129 --EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 129 --~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+...+|+++-. .. -...+.++.+.|+++|+++..
T Consensus 224 ~~~~~~~~d~vld~---~g--~~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 224 DLTDGEGVDVFLEM---SG--APKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred HhcCCCCCCEEEEC---CC--CHHHHHHHHHhhcCCCEEEEE
Confidence 011235566542 11 134578889999999999875
No 425
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=68.80 E-value=10 Score=38.13 Aligned_cols=101 Identities=11% Similarity=-0.012 Sum_probs=55.9
Q ss_pred CEEEEEcCCCCHH--HHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHH---hcc--------ccccEEEEEcCCC
Q psy17227 57 DVFVDLGSGVGQV--VLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQW---YGK--------RHGEFRLVKGDFL 123 (268)
Q Consensus 57 ~~vLDiGCG~G~~--~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~---~~~--------~~~~i~~~~gD~~ 123 (268)
.+|.=||+|+=+. +..+|...|.. |+-+|.+++. ++++...+++.... .+. ...++++. .|+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~-V~l~d~~~~~--l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~ 385 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLP-VRIKDINPQG--INHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYR 385 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCe-EEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChH
Confidence 5799999998443 33334355777 9999999863 33332333221111 111 01244443 2221
Q ss_pred CCcccccccceEEEEEeccccC-cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 124 TEEHREKITQASIVFVNNFAFG-PTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 124 ~l~~~~~~~d~dvv~~~~~~~~-~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
...++|+|+ ++..-. +-....+.++-++++|+..|.++
T Consensus 386 ------~~~~aDlVi-Eav~E~~~~K~~v~~~le~~~~~~~ilasn 424 (708)
T PRK11154 386 ------GFKHADVVI-EAVFEDLALKQQMVAEVEQNCAPHTIFASN 424 (708)
T ss_pred ------HhccCCEEe-ecccccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 223677776 333222 22455678888999999888876
No 426
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=68.74 E-value=97 Score=28.55 Aligned_cols=119 Identities=11% Similarity=0.160 Sum_probs=66.7
Q ss_pred HHHHHcCCCCCCEEEEEcCCCCHH----HHHHHHHh---CCcEEEEEeCCC--ChhHHHHHHHHHHHHHHHhccccccEE
Q psy17227 46 RMIDQINATPDDVFVDLGSGVGQV----VLQVAAAT---GCKICWGVEKAD--LPAKYAEMHTVFKRWMQWYGKRHGEFR 116 (268)
Q Consensus 46 ~ll~~l~~~~~~~vLDiGCG~G~~----~~~la~~~---~~~~v~GiD~s~--~~~~~a~~~~~~~~~~~~~~~~~~~i~ 116 (268)
.+++.+.-.+.-+|+|+|.|.|.- ...+|.+. +.-++|||+... ....+..+.+++.+.++..|. ..+
T Consensus 101 aIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv---~fe 177 (374)
T PF03514_consen 101 AILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV---PFE 177 (374)
T ss_pred HHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc---cEE
Confidence 466666666777899999999964 33334432 223789999933 233555566666666666664 344
Q ss_pred EEE---cCCCCCcccc-cccceEEEEEecc--cc-C-------cCHHHHHHHHHhcCCCCcEEEE
Q psy17227 117 LVK---GDFLTEEHRE-KITQASIVFVNNF--AF-G-------PTVDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 117 ~~~---gD~~~l~~~~-~~~d~dvv~~~~~--~~-~-------~~~~~~l~e~~r~LkpGG~~i~ 167 (268)
|.. .+.+++.... ...+-.++.+|.. +| . .++...+-...|.|+|.-.+++
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 444 3333332110 0111123444433 22 2 2245667788889999855555
No 427
>PLN03139 formate dehydrogenase; Provisional
Probab=68.66 E-value=11 Score=35.09 Aligned_cols=89 Identities=16% Similarity=0.262 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCCHHHHHHH---HHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVA---AATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI 131 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la---~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~ 131 (268)
.|++|.=||+|. ++..+| +.+|.. |++.|.++...... . ...+.+. .++. +-.
T Consensus 198 ~gktVGIVG~G~--IG~~vA~~L~afG~~-V~~~d~~~~~~~~~------~---------~~g~~~~-~~l~-----ell 253 (386)
T PLN03139 198 EGKTVGTVGAGR--IGRLLLQRLKPFNCN-LLYHDRLKMDPELE------K---------ETGAKFE-EDLD-----AML 253 (386)
T ss_pred CCCEEEEEeecH--HHHHHHHHHHHCCCE-EEEECCCCcchhhH------h---------hcCceec-CCHH-----HHH
Confidence 477888888754 444444 446776 89999875211110 0 0122221 1222 222
Q ss_pred cceEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 132 TQASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
.++|+|+++.. ..++....+ .+.+..+|||..||-+
T Consensus 254 ~~sDvV~l~lP-lt~~T~~li~~~~l~~mk~ga~lIN~ 290 (386)
T PLN03139 254 PKCDVVVINTP-LTEKTRGMFNKERIAKMKKGVLIVNN 290 (386)
T ss_pred hhCCEEEEeCC-CCHHHHHHhCHHHHhhCCCCeEEEEC
Confidence 35678887543 223344444 5678899999988854
No 428
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=68.50 E-value=62 Score=27.07 Aligned_cols=89 Identities=9% Similarity=0.073 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCCCHHH-HHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 55 PDDVFVDLGSGVGQVV-LQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~-~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.|.+||=||.|.=+.. .......|+. |+-++.... ..+. +.. ..++++++.+++..- ...+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~-VtVvsp~~~-~~l~---~l~---------~~~~i~~~~~~~~~~----dl~~ 69 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQ-LRVIAEELE-SELT---LLA---------EQGGITWLARCFDAD----ILEG 69 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCE-EEEEcCCCC-HHHH---HHH---------HcCCEEEEeCCCCHH----HhCC
Confidence 4678999998864443 2223345766 777766543 1111 111 124899999988632 2234
Q ss_pred eEEEEEeccccCcCHHHHHHHHHhcCCCCcEEE
Q psy17227 134 ASIVFVNNFAFGPTVDHALKERFQDLKDGARIV 166 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i 166 (268)
+++|++. + -.+++.. .++...+.-|.++
T Consensus 70 ~~lVi~a-t-~d~~ln~---~i~~~a~~~~ilv 97 (205)
T TIGR01470 70 AFLVIAA-T-DDEELNR---RVAHAARARGVPV 97 (205)
T ss_pred cEEEEEC-C-CCHHHHH---HHHHHHHHcCCEE
Confidence 5566652 1 1122333 3444444456665
No 429
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=67.88 E-value=85 Score=27.53 Aligned_cols=94 Identities=15% Similarity=0.217 Sum_probs=52.8
Q ss_pred HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227 49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH 127 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~ 127 (268)
....+.++.+||=.|||. |..+..+|+..|.. ++.++-++. .++.++ ..|. . .++. ....+
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~-v~~~~~~~~------~~~~~~----~~g~---~-~~~~--~~~~~- 222 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAE-VFAFTRSGE------HQELAR----ELGA---D-WAGD--SDDLP- 222 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCe-EEEEcCChH------HHHHHH----HhCC---c-EEec--cCccC-
Confidence 556788888888887753 22345566777765 888888764 112221 1221 1 1111 11111
Q ss_pred cccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 128 REKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 128 ~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+ ..+|+++... . ....+.++.+.|++||+++..
T Consensus 223 -~--~~vD~vi~~~----~-~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 223 -P--EPLDAAIIFA----P-VGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred -C--CcccEEEEcC----C-cHHHHHHHHHHhhcCCEEEEE
Confidence 1 1345554321 1 124688889999999999975
No 430
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=67.79 E-value=12 Score=34.58 Aligned_cols=87 Identities=23% Similarity=0.266 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.|.+|-=||+|. |......++.+|.. |++.|.... . ..... .+.++. +-...
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp~~~-----~--------------~~~~~-----~~~~L~--ell~~ 167 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDPPRA-----D--------------RGDEG-----DFRSLD--ELVQE 167 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCccc-----c--------------ccccc-----ccCCHH--HHHhh
Confidence 578999999985 66555556678887 899985431 0 00011 122221 22235
Q ss_pred eEEEEEeccccCcC---HHHHH-HHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPT---VDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~---~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
+|+|+++..+.... -...+ .+.+..||||..||=+
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINA 206 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEEC
Confidence 67888765443321 22233 5667888888888743
No 431
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=67.43 E-value=60 Score=27.31 Aligned_cols=61 Identities=13% Similarity=0.016 Sum_probs=36.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
.+.++|=.|+ +|.++..+++. .|.. |+.++.++. ...+..+.++ .. ..++.++.+|+.+..
T Consensus 6 ~~~~vlItGa-sg~iG~~la~~l~~~G~~-v~~~~r~~~--~~~~~~~~~~----~~---~~~~~~~~~Dl~~~~ 69 (262)
T PRK13394 6 NGKTAVVTGA-ASGIGKEIALELARAGAA-VAIADLNQD--GANAVADEIN----KA---GGKAIGVAMDVTNED 69 (262)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCe-EEEEeCChH--HHHHHHHHHH----hc---CceEEEEECCCCCHH
Confidence 3567886665 35555555543 4665 889988874 2222222222 11 236888999998754
No 432
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=67.30 E-value=55 Score=28.64 Aligned_cols=97 Identities=20% Similarity=0.217 Sum_probs=54.4
Q ss_pred HHHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 47 MIDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
++...++.++.+||=.|+| .|..+..+|+..|.. ++.++.+++. . +.++ ..|.. .+. +..+.
T Consensus 147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~-vi~~~~~~~~--~----~~~~----~~g~~--~~~----~~~~~ 209 (319)
T cd08242 147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPD-VVLVGRHSEK--L----ALAR----RLGVE--TVL----PDEAE 209 (319)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCe-EEEEcCCHHH--H----HHHH----HcCCc--EEe----Ccccc
Confidence 4455678899999988764 244455567777877 8999888641 1 2221 12221 111 11111
Q ss_pred cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
... ..+|+++-. . .-...+....+.|+++|+++..
T Consensus 210 -~~~--~~~d~vid~-~----g~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 210 -SEG--GGFDVVVEA-T----GSPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred -ccC--CCCCEEEEC-C----CChHHHHHHHHHhhcCCEEEEE
Confidence 111 235555532 1 1134567778899999999874
No 433
>KOG2539|consensus
Probab=67.23 E-value=21 Score=33.80 Aligned_cols=111 Identities=15% Similarity=0.074 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCC--cEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEc-CCCC--Ccccc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGC--KICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKG-DFLT--EEHRE 129 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~--~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~g-D~~~--l~~~~ 129 (268)
..+.+.|+|+|.|.-.-.+....+. ..++-||.|..|...+. ...+ . |...+.. ++.. -+.+ +|. +
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e--~~lr----~-~~~~g~~-~v~~~~~~r~~~pi-~ 270 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSE--KNLR----D-GSHIGEP-IVRKLVFHRQRLPI-D 270 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHH--Hhhc----C-hhhcCch-hccccchhcccCCC-C
Confidence 3567999999988765433333332 24788999986444433 1111 1 1111111 1111 2222 232 2
Q ss_pred cccceEEEEEecc-ccCcCH---HHHHHHHH-hcCCCCcEEEEeCCCCCC
Q psy17227 130 KITQASIVFVNNF-AFGPTV---DHALKERF-QDLKDGARIVSSKSFCPL 174 (268)
Q Consensus 130 ~~~d~dvv~~~~~-~~~~~~---~~~l~e~~-r~LkpGG~~i~~~~~~~~ 174 (268)
....+|++++... ++.... .....+.+ +..++|+.+|+.+.-.+.
T Consensus 271 ~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~ 320 (491)
T KOG2539|consen 271 IKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTM 320 (491)
T ss_pred cccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCcc
Confidence 2234677776554 343332 23345555 578999999988655443
No 434
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=66.99 E-value=22 Score=31.36 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=57.6
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227 52 NATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI 131 (268)
Q Consensus 52 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~ 131 (268)
.+.+|+.-+|+|.-.|+-+-.+.++ +-. |++||.-+ |...+- ..+.|+....|-.++... .
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr-~m~-V~aVDng~-------ma~sL~--------dtg~v~h~r~DGfk~~P~-r- 268 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR-NMR-VYAVDNGP-------MAQSLM--------DTGQVTHLREDGFKFRPT-R- 268 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc-ceE-EEEeccch-------hhhhhh--------cccceeeeeccCcccccC-C-
Confidence 3678999999999999999888775 444 99999987 222111 246889999998876431 1
Q ss_pred cceEEEEEeccccCcCHHHHHHHHHhcCCCC
Q psy17227 132 TQASIVFVNNFAFGPTVDHALKERFQDLKDG 162 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpG 162 (268)
...|-.+|..+ +.+.+.-.-|...|..|
T Consensus 269 ~~idWmVCDmV---EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 269 SNIDWMVCDMV---EKPARVAALIAKWLVNG 296 (358)
T ss_pred CCCceEEeehh---cCcHHHHHHHHHHHHcc
Confidence 23455666544 33444444444555443
No 435
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=66.87 E-value=69 Score=27.65 Aligned_cols=96 Identities=21% Similarity=0.257 Sum_probs=56.7
Q ss_pred cCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--
Q psy17227 51 INATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-- 126 (268)
Q Consensus 51 l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-- 126 (268)
..+.+|.+||=.|+ +.|..++.+|+..|.. ++.+..++. .. +.+. ..|. .. ++. +-.++.
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~-v~~~~~~~~--~~----~~~~----~~g~--~~--~~~-~~~~~~~~ 201 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGAT-VTATTRSPE--RA----ALLK----ELGA--DE--VVI-DDGAIAEQ 201 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCE-EEEEeCCHH--HH----HHHH----hcCC--cE--EEe-cCccHHHH
Confidence 45788999998886 6788888899988887 899888864 11 1111 1221 11 111 111111
Q ss_pred ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.......+|+++-. . . ...+.+..+.|+++|+++..
T Consensus 202 i~~~~~~~d~vl~~-~---~--~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 202 LRAAPGGFDKVLEL-V---G--TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred HHHhCCCceEEEEC-C---C--hHHHHHHHHHhccCCEEEEE
Confidence 00001235666532 1 1 24577888999999999865
No 436
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.38 E-value=27 Score=30.62 Aligned_cols=33 Identities=18% Similarity=0.075 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCHHHHHHH-HHhCCcEEEEEeCCCC
Q psy17227 57 DVFVDLGSGVGQVVLQVA-AATGCKICWGVEKADL 90 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la-~~~~~~~v~GiD~s~~ 90 (268)
.+|.=||+|.-+.++..+ ...|.. |+.+|.++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~-V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFD-VTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCe-EEEEeCCHH
Confidence 357778998655443322 234555 999999986
No 437
>PRK06701 short chain dehydrogenase; Provisional
Probab=66.35 E-value=82 Score=27.47 Aligned_cols=62 Identities=18% Similarity=0.045 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
+++++|=.|+ +|+++..+++. .|.. |+.++.++.. ........++ .. ..++.++.+|+.+..
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~-V~l~~r~~~~-~~~~~~~~~~----~~---~~~~~~~~~Dl~~~~ 109 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGAD-IAIVYLDEHE-DANETKQRVE----KE---GVKCLLIPGDVSDEA 109 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCE-EEEEeCCcch-HHHHHHHHHH----hc---CCeEEEEEccCCCHH
Confidence 4678998886 46566666654 3665 8888877531 1111111111 11 236889999998744
No 438
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=66.18 E-value=61 Score=28.20 Aligned_cols=42 Identities=19% Similarity=0.372 Sum_probs=32.2
Q ss_pred HHHcCCCCCCEEEEEcCC--CCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 48 IDQINATPDDVFVDLGSG--VGQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG--~G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
.....+.++.+||=.|.| .|..+..+++..|.. ++.++.++.
T Consensus 159 ~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~-v~~~~~~~~ 202 (342)
T cd08266 159 VTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGAT-VIATAGSED 202 (342)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHH
Confidence 344567889999988864 677788888888887 888887763
No 439
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=65.95 E-value=37 Score=30.16 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=29.9
Q ss_pred HHHcCCCCCCEEEEEcC-CCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 48 IDQINATPDDVFVDLGS-GVGQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGC-G~G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
+..+++.++.+||=.|| +.|..+..+|+..|.. ++.++.++.
T Consensus 162 ~~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~-v~~~~~~~~ 204 (337)
T cd05283 162 LKRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAE-VTAFSRSPS 204 (337)
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCe-EEEEcCCHH
Confidence 34466788888877887 3455566677777875 899988864
No 440
>PLN02306 hydroxypyruvate reductase
Probab=65.58 E-value=22 Score=33.06 Aligned_cols=105 Identities=14% Similarity=0.199 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCC-CHHHHHHH-HHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVA-AATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la-~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
.|.+|.=||.|. |......+ +.+|.+ |++.|.++.. ............+...+. ..+.+.. .. ++.+-..
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fGm~-V~~~d~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~--~~--~L~ell~ 235 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQST-RLEKFVTAYGQFLKANGE--QPVTWKR--AS--SMEEVLR 235 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCE-EEEECCCCch-hhhhhhhhhccccccccc--ccccccc--cC--CHHHHHh
Confidence 467888888865 33333332 245776 9999987631 111000000000000000 0111110 01 1222223
Q ss_pred ceEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 133 QASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 133 d~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
.+|+|+++..+ .++-...+ .+.+..||||..||=+
T Consensus 236 ~sDiV~lh~Pl-t~~T~~lin~~~l~~MK~ga~lIN~ 271 (386)
T PLN02306 236 EADVISLHPVL-DKTTYHLINKERLALMKKEAVLVNA 271 (386)
T ss_pred hCCEEEEeCCC-ChhhhhhcCHHHHHhCCCCeEEEEC
Confidence 56888876442 34444444 5677999999998843
No 441
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=65.54 E-value=18 Score=32.84 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=32.5
Q ss_pred HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
....++++|++||=+|||. |.++..+|+..|..+|+++|.++.
T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~ 222 (368)
T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPD 222 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 4456788999999998753 445566777788856999999975
No 442
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=65.51 E-value=38 Score=31.70 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCHHHHHHH-HHhCCcEEEEEeCCCC
Q psy17227 57 DVFVDLGSGVGQVVLQVA-AATGCKICWGVEKADL 90 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la-~~~~~~~v~GiD~s~~ 90 (268)
++|.=||.|.-+.....+ ...|.. |+|+|.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~-V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQ-VIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCE-EEEEeCCHH
Confidence 467778888655544332 234665 999999985
No 443
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=65.32 E-value=29 Score=28.88 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=24.5
Q ss_pred CCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCC
Q psy17227 56 DDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKA 88 (268)
Q Consensus 56 ~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s 88 (268)
+.+||=+||| .|..........|..+++-+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4579999998 46655554555788779999987
No 444
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=65.28 E-value=17 Score=32.89 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=31.9
Q ss_pred HHHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 48 IDQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
.+..++.+|++||=.|+|. |.++..+|+..|..+|++++.++.
T Consensus 180 ~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~ 223 (369)
T cd08301 180 WNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPS 223 (369)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 3456788999999998752 344566778788855999999875
No 445
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=64.72 E-value=57 Score=26.59 Aligned_cols=100 Identities=10% Similarity=-0.008 Sum_probs=48.5
Q ss_pred EEEEcCCCCHHHHHH-HHHhCCcEEEEEeCCCChhHHHHHHHHHHH----HHHHhccc-------cccEEEEEcCCCCCc
Q psy17227 59 FVDLGSGVGQVVLQV-AAATGCKICWGVEKADLPAKYAEMHTVFKR----WMQWYGKR-------HGEFRLVKGDFLTEE 126 (268)
Q Consensus 59 vLDiGCG~G~~~~~l-a~~~~~~~v~GiD~s~~~~~~a~~~~~~~~----~~~~~~~~-------~~~i~~~~gD~~~l~ 126 (268)
|-=||+|+=+..+.+ ....|.. |+-+|.++... .++.+.+++ ..+..... ..++++ ..|+.+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~l--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~-- 75 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYE-VTLYDRSPEAL--ERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE-- 75 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSE-EEEE-SSHHHH--HHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG--
T ss_pred EEEEcCCHHHHHHHHHHHhCCCc-EEEEECChHHH--HhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH--
Confidence 555788654433222 2234666 99999998743 333333332 11111111 235654 334432
Q ss_pred ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
- -++|+|+=...-..+-....|+++-+.++|+..|.+.
T Consensus 76 ---~-~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 76 ---A-VDADLVIEAIPEDLELKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp ---G-CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE-
T ss_pred ---H-hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEec
Confidence 2 2677776322212222455678888899999998875
No 446
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=64.48 E-value=49 Score=29.20 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=30.7
Q ss_pred HHcCCCCCCEEEEEcCC-CCHHHHHHHHHh-CCcEEEEEeCCCC
Q psy17227 49 DQINATPDDVFVDLGSG-VGQVVLQVAAAT-GCKICWGVEKADL 90 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG-~G~~~~~la~~~-~~~~v~GiD~s~~ 90 (268)
...+++++.+||=.||| .|..+..+|+.. |.. +++++-+++
T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~-v~~~~~~~~ 198 (338)
T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAK-VIAVDINDD 198 (338)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCe-EEEEeCChH
Confidence 55678899999999974 355666677764 775 899988875
No 447
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=64.31 E-value=55 Score=28.94 Aligned_cols=101 Identities=18% Similarity=0.209 Sum_probs=56.5
Q ss_pred HHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-
Q psy17227 49 DQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE- 126 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~- 126 (268)
..+++.+|.+||=.|+| .|..+..+|+..|...++.++-++. ... .+. ..+. -.++..+-.++.
T Consensus 159 ~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~--~~~----~~~----~~g~----~~~~~~~~~~~~~ 224 (343)
T cd08235 159 RKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEF--RLE----FAK----KLGA----DYTIDAAEEDLVE 224 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH--HHH----HHH----HhCC----cEEecCCccCHHH
Confidence 44578899999888886 6777777888877765777777764 111 111 1121 112222111110
Q ss_pred -cc--ccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 -HR--EKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 -~~--~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.. .....+|+++-... -...+....+.|+++|+++..
T Consensus 225 ~i~~~~~~~~vd~vld~~~-----~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 225 KVRELTDGRGADVVIVATG-----SPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred HHHHHhCCcCCCEEEECCC-----ChHHHHHHHHHhhcCCEEEEE
Confidence 00 01112566653211 124677788999999999875
No 448
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=63.95 E-value=19 Score=33.30 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCC
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKAD 89 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~ 89 (268)
.|.+|-=||+|. |......++.+|.. |++.|...
T Consensus 115 ~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp~~ 149 (381)
T PRK00257 115 AERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDPPR 149 (381)
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECCcc
Confidence 578899999986 65555556667887 89998754
No 449
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=63.94 E-value=80 Score=28.00 Aligned_cols=103 Identities=18% Similarity=0.157 Sum_probs=52.8
Q ss_pred HHcCCCCCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCC-C-
Q psy17227 49 DQINATPDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLT-E- 125 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~-l- 125 (268)
...++.++.+||=.|||. |..+..+|+..|..++++++.++. +.. .++ ..|.. .-+.....+... +
T Consensus 160 ~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~--~~~----~~~----~~g~~-~~v~~~~~~~~~~i~ 228 (345)
T cd08286 160 LNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDN--RLE----VAK----KLGAT-HTVNSAKGDAIEQVL 228 (345)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH--HHH----HHH----HhCCC-ceeccccccHHHHHH
Confidence 344677888887777642 334556677788445888888763 111 111 12210 011111111100 0
Q ss_pred cccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 126 EHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
.... ...+|+++- .. .....+..+.+.|+++|+++..
T Consensus 229 ~~~~-~~~~d~vld-~~----g~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 229 ELTD-GRGVDVVIE-AV----GIPATFELCQELVAPGGHIANV 265 (345)
T ss_pred HHhC-CCCCCEEEE-CC----CCHHHHHHHHHhccCCcEEEEe
Confidence 0101 123566653 22 1133577888999999999865
No 450
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=63.77 E-value=25 Score=34.02 Aligned_cols=89 Identities=21% Similarity=0.254 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQ 133 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~d 133 (268)
.|++|.=||+|. |......++.+|.. |++.|.+... .. .. . ..++.. +.. +-...
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~~-V~~~d~~~~~---~~----~~----~-----~g~~~~--~l~-----ell~~ 194 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGMK-VIAYDPYISP---ER----AA----Q-----LGVELV--SLD-----ELLAR 194 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCCCCh---hH----HH----h-----cCCEEE--cHH-----HHHhh
Confidence 477899999975 44443444557876 9999986531 11 00 0 122322 322 22234
Q ss_pred eEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 134 ASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 134 ~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
+|+|++... ..++....+ .+.+..+|||..||-+
T Consensus 195 aDiV~l~lP-~t~~t~~li~~~~l~~mk~ga~lIN~ 229 (526)
T PRK13581 195 ADFITLHTP-LTPETRGLIGAEELAKMKPGVRIINC 229 (526)
T ss_pred CCEEEEccC-CChHhhcCcCHHHHhcCCCCeEEEEC
Confidence 677776433 222333344 5678889999888743
No 451
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=63.77 E-value=82 Score=27.16 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=29.2
Q ss_pred CCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCC
Q psy17227 52 NATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKA 88 (268)
Q Consensus 52 ~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s 88 (268)
.+.++.+|+-.|| +.|..+..+|+..|+. +++++-+
T Consensus 140 ~~~~g~~vli~g~~g~~g~~~~~la~~~g~~-v~~~~~~ 177 (319)
T cd08267 140 KVKPGQRVLINGASGGVGTFAVQIAKALGAH-VTGVCST 177 (319)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCE-EEEEeCH
Confidence 3778999999997 4677888888888886 8888744
No 452
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=63.77 E-value=22 Score=34.85 Aligned_cols=88 Identities=14% Similarity=0.190 Sum_probs=48.2
Q ss_pred HcCCCCCCEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHH-HHhcc-ccccEEEEEcCCCC
Q psy17227 50 QINATPDDVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWM-QWYGK-RHGEFRLVKGDFLT 124 (268)
Q Consensus 50 ~l~~~~~~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~-~~~~~-~~~~i~~~~gD~~~ 124 (268)
.++.+.|.+||=.|+ +|+++..+++. .|.. |++++.++. ........+.+.. ...|. ...++.++.+|+.+
T Consensus 74 ~~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~-Vval~Rn~e--kl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD 149 (576)
T PLN03209 74 ELDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFR-VRAGVRSAQ--RAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK 149 (576)
T ss_pred ccccCCCCEEEEECC-CCHHHHHHHHHHHHCCCe-EEEEeCCHH--HHHHHHHHhhhhccccccccccCceEEEEecCCC
Confidence 456678888998887 46676666554 3555 888888764 2222111111000 00010 01368999999988
Q ss_pred Cc-ccccccceEEEEEec
Q psy17227 125 EE-HREKITQASIVFVNN 141 (268)
Q Consensus 125 l~-~~~~~~d~dvv~~~~ 141 (268)
.. .......+|+|+++.
T Consensus 150 ~esI~~aLggiDiVVn~A 167 (576)
T PLN03209 150 PDQIGPALGNASVVICCI 167 (576)
T ss_pred HHHHHHHhcCCCEEEEcc
Confidence 54 222223466766553
No 453
>PRK08643 acetoin reductase; Validated
Probab=62.77 E-value=92 Score=26.16 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=34.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
++++|=.|+ +|+++..+++. .|.. |+.++.++. ..++....+. .. ..++.++.+|+.+..
T Consensus 2 ~k~~lItGa-s~giG~~la~~l~~~G~~-v~~~~r~~~--~~~~~~~~~~----~~---~~~~~~~~~Dl~~~~ 64 (256)
T PRK08643 2 SKVALVTGA-GQGIGFAIAKRLVEDGFK-VAIVDYNEE--TAQAAADKLS----KD---GGKAIAVKADVSDRD 64 (256)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCE-EEEEeCCHH--HHHHHHHHHH----hc---CCeEEEEECCCCCHH
Confidence 356777774 45566555544 3654 899988764 2322222221 11 236888999998753
No 454
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=62.55 E-value=86 Score=25.72 Aligned_cols=102 Identities=22% Similarity=0.279 Sum_probs=44.9
Q ss_pred CEEEEEcCCCCHHHHHHH-HHhCCcEEEEEeCCCChhHHHHHHH--------HHHHHHHHhccccccEEEEEcCCCCCcc
Q psy17227 57 DVFVDLGSGVGQVVLQVA-AATGCKICWGVEKADLPAKYAEMHT--------VFKRWMQWYGKRHGEFRLVKGDFLTEEH 127 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la-~~~~~~~v~GiD~s~~~~~~a~~~~--------~~~~~~~~~~~~~~~i~~~~gD~~~l~~ 127 (268)
|+|-=+|.|.=++...++ ...|.. |+|+|+++. .+...++ .+.+..++. ...+++++.. |+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~-V~g~D~~~~--~v~~l~~g~~p~~E~~l~~ll~~~-~~~~~l~~t~-~~~~--- 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQ-VIGVDIDEE--KVEALNNGELPIYEPGLDELLKEN-VSAGRLRATT-DIEE--- 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSE-EEEE-S-HH--HHHHHHTTSSSS-CTTHHHHHHHH-HHTTSEEEES-EHHH---
T ss_pred CEEEEECCCcchHHHHHHHHhCCCE-EEEEeCChH--HHHHHhhccccccccchhhhhccc-cccccchhhh-hhhh---
Confidence 356667777655543332 234665 999999985 3322110 000000000 1123444431 2221
Q ss_pred cccccceEEEEEec-c-cc---CcC---HHHHHHHHHhcCCCCcEEEEe
Q psy17227 128 REKITQASIVFVNN-F-AF---GPT---VDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 128 ~~~~~d~dvv~~~~-~-~~---~~~---~~~~l~e~~r~LkpGG~~i~~ 168 (268)
...++|++++.. + .. .+| +..++..+.+.|++|..+++-
T Consensus 73 --ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ 119 (185)
T PF03721_consen 73 --AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIE 119 (185)
T ss_dssp --HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEES
T ss_pred --hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEc
Confidence 122456666532 2 21 122 566788888999997777764
No 455
>PRK10537 voltage-gated potassium channel; Provisional
Probab=62.50 E-value=28 Score=32.40 Aligned_cols=89 Identities=11% Similarity=0.124 Sum_probs=50.6
Q ss_pred CEEEEEcCCCCHHHHHHHHHh---CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc--cccc
Q psy17227 57 DVFVDLGSGVGQVVLQVAAAT---GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH--REKI 131 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~~---~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~--~~~~ 131 (268)
++++= ||.|..+..+++.. +.. ++-||.++. ++ . ...+..++.||..+... ..+.
T Consensus 241 ~HvII--~G~g~lg~~v~~~L~~~g~~-vvVId~d~~----~~----~---------~~~g~~vI~GD~td~e~L~~AgI 300 (393)
T PRK10537 241 DHFII--CGHSPLAINTYLGLRQRGQA-VTVIVPLGL----EH----R---------LPDDADLIPGDSSDSAVLKKAGA 300 (393)
T ss_pred CeEEE--ECCChHHHHHHHHHHHCCCC-EEEEECchh----hh----h---------ccCCCcEEEeCCCCHHHHHhcCc
Confidence 45655 55566776666543 444 788886531 11 0 11357799999987542 1234
Q ss_pred cceEEEEEeccccCcCH-HHHHHHHHhcCCCCcEEEEe
Q psy17227 132 TQASIVFVNNFAFGPTV-DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~~~-~~~l~e~~r~LkpGG~~i~~ 168 (268)
.+++.+++. ...|. +...-...|.+.|..++++.
T Consensus 301 ~~A~aVI~~---t~dD~~Nl~ivL~ar~l~p~~kIIa~ 335 (393)
T PRK10537 301 ARARAILAL---RDNDADNAFVVLAAKEMSSDVKTVAA 335 (393)
T ss_pred ccCCEEEEc---CCChHHHHHHHHHHHHhCCCCcEEEE
Confidence 456666552 22332 33334456888898888864
No 456
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.42 E-value=67 Score=28.17 Aligned_cols=100 Identities=12% Similarity=0.021 Sum_probs=48.8
Q ss_pred CEEEEEcCCCCHHHHHHH-HHhCCcEEEEEeCCCChhHHHHHHHHHHHHH---HHhccc--------cccEEEEEcCCCC
Q psy17227 57 DVFVDLGSGVGQVVLQVA-AATGCKICWGVEKADLPAKYAEMHTVFKRWM---QWYGKR--------HGEFRLVKGDFLT 124 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la-~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~---~~~~~~--------~~~i~~~~gD~~~ 124 (268)
.+|.=||+|.-+..+... ...|.. |+..|.+++. ++++.+.+.+.. ...+.- ..++++. .|..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~-V~l~d~~~~~--~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~- 79 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYD-VLLNDVSADR--LEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLE- 79 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCe-EEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHH-
Confidence 457778998655433222 224555 9999999863 322222111110 001110 0123332 2321
Q ss_pred CcccccccceEEEEEeccccCcC-HHHHHHHHHhcCCCCcEEEE
Q psy17227 125 EEHREKITQASIVFVNNFAFGPT-VDHALKERFQDLKDGARIVS 167 (268)
Q Consensus 125 l~~~~~~~d~dvv~~~~~~~~~~-~~~~l~e~~r~LkpGG~~i~ 167 (268)
...++|+|+.... -..+ ....++++...++|+..+++
T Consensus 80 -----~~~~aD~Vieavp-e~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 80 -----DLADCDLVIEAAT-EDETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred -----HhcCCCEEEEcCc-CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1235677775321 1111 33456777788999888774
No 457
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=62.37 E-value=68 Score=27.66 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=55.3
Q ss_pred HHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 49 DQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
..+...++.+||=.|+ +.|..+..+|+..|.. +++++-++. .. +.++ ..|. ..+ +.. ..++.
T Consensus 126 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~-v~~~~~~~~--~~----~~~~----~~g~--~~~-~~~--~~~~~ 189 (305)
T cd08270 126 RRGGPLLGRRVLVTGASGGVGRFAVQLAALAGAH-VVAVVGSPA--RA----EGLR----ELGA--AEV-VVG--GSELS 189 (305)
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHcCCE-EEEEeCCHH--HH----HHHH----HcCC--cEE-Eec--ccccc
Confidence 3444456899999888 5777788888888886 899987763 11 1111 1221 111 111 11111
Q ss_pred ccccccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 ~~~~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
. ..+|+++-. . . ...+.+.++.|+++|+++..
T Consensus 190 --~--~~~d~vl~~-~--g---~~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 190 --G--APVDLVVDS-V--G---GPQLARALELLAPGGTVVSV 221 (305)
T ss_pred --C--CCceEEEEC-C--C---cHHHHHHHHHhcCCCEEEEE
Confidence 1 235666632 1 1 13578889999999999965
No 458
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=62.01 E-value=7.3 Score=31.40 Aligned_cols=100 Identities=22% Similarity=0.272 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCC-----------
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDF----------- 122 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~----------- 122 (268)
+..+|+=+|.|. |.-+..++...|+. ++.+|..+. ... ..+. .+ ...+.....+-
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~-v~~~d~~~~--~~~----~~~~----~~--~~~i~~~~~~~~~~~~~~~~~~ 85 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAE-VVVPDERPE--RLR----QLES----LG--AYFIEVDYEDHLERKDFDKADY 85 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-E-EEEEESSHH--HHH----HHHH----TT--TEESEETTTTTTTSB-CCHHHC
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCE-EEeccCCHH--HHH----hhhc----cc--CceEEEcccccccccccchhhh
Confidence 346799999886 44466667778888 899999863 111 1111 11 11222211111
Q ss_pred CCCc------ccccccceEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEE
Q psy17227 123 LTEE------HREKITQASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVS 167 (268)
Q Consensus 123 ~~l~------~~~~~~d~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~ 167 (268)
.+.| |......+|+|+++...|.......+ +++.+.||||..++=
T Consensus 86 ~~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvD 137 (168)
T PF01262_consen 86 YEHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVD 137 (168)
T ss_dssp HHHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEE
T ss_pred hHHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEE
Confidence 1111 11112346788877666655544444 788899998887774
No 459
>KOG1253|consensus
Probab=61.63 E-value=6.7 Score=37.32 Aligned_cols=105 Identities=10% Similarity=0.017 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHHhC-CcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc--ccc
Q psy17227 54 TPDDVFVDLGSGVGQVVLQVAAATG-CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH--REK 130 (268)
Q Consensus 54 ~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~--~~~ 130 (268)
.++-+|||.=|++|--++..|+..+ ...|++-|.++..+..- +++.+ ..+ ....++...+|+..+=+ +..
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i--~~Nv~----~N~-v~~ive~~~~DA~~lM~~~~~~ 180 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSI--QRNVE----LNG-VEDIVEPHHSDANVLMYEHPMV 180 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHH--Hhhhh----hcC-chhhcccccchHHHHHHhcccc
Confidence 4567899999999999999999864 45789999998744322 22222 122 23457777778765422 111
Q ss_pred ccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 131 ITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 131 ~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
...||+|=...+ ......|...++.+..||.+.+|
T Consensus 181 ~~~FDvIDLDPy---Gs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 181 AKFFDVIDLDPY---GSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ccccceEecCCC---CCccHHHHHHHHHhhcCCEEEEE
Confidence 234566655433 23466778888999999999977
No 460
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=60.95 E-value=20 Score=36.06 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=55.1
Q ss_pred CEEEEEcCCCCHHHHHH-HHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHH---Hhcc--------ccccEEEEEcCCCC
Q psy17227 57 DVFVDLGSGVGQVVLQV-AAATGCKICWGVEKADLPAKYAEMHTVFKRWMQ---WYGK--------RHGEFRLVKGDFLT 124 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~l-a~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~---~~~~--------~~~~i~~~~gD~~~ 124 (268)
.+|.=||+|+=+..+.. ....|.. |+-+|.+++... ++...+++... ..|. ...++++. .|+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~~~l~--~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~- 388 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVP-VIMKDINQKALD--LGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYA- 388 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCe-EEEEeCCHHHHH--HHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHH-
Confidence 47999999984444332 2335776 999999987433 32222222111 1111 01244433 2322
Q ss_pred CcccccccceEEEEEeccccC-cCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EEHREKITQASIVFVNNFAFG-PTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~~~~~~~d~dvv~~~~~~~~-~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
...++|+|+ +++.=. .-....|.++-+.++|+..|.+.
T Consensus 389 -----~~~~aDlVi-Eav~E~l~~K~~vf~~l~~~~~~~~ilasN 427 (715)
T PRK11730 389 -----GFERVDVVV-EAVVENPKVKAAVLAEVEQKVREDTILASN 427 (715)
T ss_pred -----HhcCCCEEE-ecccCcHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 123677766 333222 22455678888899999888875
No 461
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.23 E-value=67 Score=28.01 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=49.0
Q ss_pred EEEEEcCCC--CHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHH---HHHhcc-c-------cccEEEEEcCCCC
Q psy17227 58 VFVDLGSGV--GQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRW---MQWYGK-R-------HGEFRLVKGDFLT 124 (268)
Q Consensus 58 ~vLDiGCG~--G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~---~~~~~~-~-------~~~i~~~~gD~~~ 124 (268)
+|-=||+|. +.++..++ ..|.. |+++|.++.. ++++++.+++. ..+.|. . ..++++ ..|..
T Consensus 5 kI~VIG~G~mG~~ia~~la-~~g~~-V~~~d~~~~~--~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~- 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCA-VAGYD-VVMVDISDAA--VDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD- 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHH-HCCCc-eEEEeCCHHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH-
Confidence 466688874 22333333 34665 9999999863 32222222211 111111 0 013332 22321
Q ss_pred CcccccccceEEEEEeccccCcCH---HHHHHHHHhcCCCCcEEEEe
Q psy17227 125 EEHREKITQASIVFVNNFAFGPTV---DHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 125 l~~~~~~~d~dvv~~~~~~~~~~~---~~~l~e~~r~LkpGG~~i~~ 168 (268)
...++|+|+... .++. ...+.++.+.++|+..+++.
T Consensus 79 -----~~~~aDlVi~av---~e~~~~k~~~~~~l~~~~~~~~il~s~ 117 (282)
T PRK05808 79 -----DLKDADLVIEAA---TENMDLKKKIFAQLDEIAKPEAILATN 117 (282)
T ss_pred -----HhccCCeeeecc---cccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 123567777642 2332 35678888889998888553
No 462
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=58.74 E-value=19 Score=31.13 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=42.9
Q ss_pred CCCEEEEEcCCCCHHHHHH-HHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccc---
Q psy17227 55 PDDVFVDLGSGVGQVVLQV-AAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK--- 130 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~l-a~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~--- 130 (268)
++-+.||||-|.--+--.+ ...+|.. .+|-|+++....-|++ .+.. +-++ ...|++....-.+--|++-
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwr-fvGseid~~sl~sA~~--ii~~---N~~l-~~~I~lr~qk~~~~if~giig~ 150 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWR-FVGSEIDSQSLSSAKA--IISA---NPGL-ERAIRLRRQKDSDAIFNGIIGK 150 (292)
T ss_pred CceEEEeeccCcccccccccceeecce-eecCccCHHHHHHHHH--HHHc---Ccch-hhheeEEeccCccccccccccc
Confidence 5567899988754332111 2346666 8999999874444442 2211 0011 1235544433222111111
Q ss_pred ccceEEEEEeccccC
Q psy17227 131 ITQASIVFVNNFAFG 145 (268)
Q Consensus 131 ~~d~dvv~~~~~~~~ 145 (268)
-..+|++.||..+|.
T Consensus 151 nE~yd~tlCNPPFh~ 165 (292)
T COG3129 151 NERYDATLCNPPFHD 165 (292)
T ss_pred cceeeeEecCCCcch
Confidence 134678889877664
No 463
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=58.55 E-value=33 Score=31.20 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=24.1
Q ss_pred CCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCC
Q psy17227 56 DDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKAD 89 (268)
Q Consensus 56 ~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~ 89 (268)
+.+||=|||| .|..........|..+++-+|-+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3579999998 455544444456887788898874
No 464
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=58.13 E-value=1.2e+02 Score=25.90 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=31.5
Q ss_pred HcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 50 QINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 50 ~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
..++.++.+||=.|+ +.|..+..+|+..|.. +++++.++.
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~-v~~~~~~~~ 172 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGAT-VIGTVSSEE 172 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCE-EEEEcCCHH
Confidence 456778999999994 4677788888888887 888887764
No 465
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=58.09 E-value=13 Score=33.50 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCC-CHHHHHHHH-HhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227 55 PDDVFVDLGSGV-GQVVLQVAA-ATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 55 ~~~~vLDiGCG~-G~~~~~la~-~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
.|.+|.=||.|. |......++ .+|.. |++.|....... .. ...+++ .++. +-..
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm~-V~~~~~~~~~~~-------~~---------~~~~~~--~~l~-----ell~ 199 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNMP-ILYNARRHHKEA-------EE---------RFNARY--CDLD-----TLLQ 199 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCCE-EEEECCCCchhh-------HH---------hcCcEe--cCHH-----HHHH
Confidence 578898999876 554444444 46776 888887642000 00 012222 1322 2223
Q ss_pred ceEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 133 QASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 133 d~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
.+|+|+++.. ..++....+ .+.+..+|||..||=+
T Consensus 200 ~sDvv~lh~p-lt~~T~~li~~~~l~~mk~ga~lIN~ 235 (323)
T PRK15409 200 ESDFVCIILP-LTDETHHLFGAEQFAKMKSSAIFINA 235 (323)
T ss_pred hCCEEEEeCC-CChHHhhccCHHHHhcCCCCeEEEEC
Confidence 5688887544 223444445 5677899999988854
No 466
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=58.03 E-value=1.2e+02 Score=26.64 Aligned_cols=42 Identities=26% Similarity=0.409 Sum_probs=27.5
Q ss_pred HHHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCC
Q psy17227 47 MIDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKAD 89 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~ 89 (268)
+.....+.++.+||=.|+| .|..++.+|+..|.. ++.+..+.
T Consensus 156 l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~-v~~~~~~~ 198 (306)
T cd08258 156 VAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGAT-VVVVGTEK 198 (306)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEECCCC
Confidence 3344567788888776653 455566777877876 66664443
No 467
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.56 E-value=31 Score=30.41 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=49.7
Q ss_pred EEEEEcCCCCHHHHHH-HHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHH---Hhccc--------cccEEEEEcCCCCC
Q psy17227 58 VFVDLGSGVGQVVLQV-AAATGCKICWGVEKADLPAKYAEMHTVFKRWMQ---WYGKR--------HGEFRLVKGDFLTE 125 (268)
Q Consensus 58 ~vLDiGCG~G~~~~~l-a~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~---~~~~~--------~~~i~~~~gD~~~l 125 (268)
+|-=||+|+=+..+.. ....|.. |+.+|.+++... ++.+.+++... ..|.. ..++++ ..|..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~~~--~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~-- 80 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVD-VLVFETTEELAT--AGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLG-- 80 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCE-EEEEECCHHHHH--HHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHH--
Confidence 6778899853333222 2235766 999999997433 32222222111 11110 012322 23331
Q ss_pred cccccccceEEEEEeccccCcCH-HHHHHHHHhcC-CCCcEEEEe
Q psy17227 126 EHREKITQASIVFVNNFAFGPTV-DHALKERFQDL-KDGARIVSS 168 (268)
Q Consensus 126 ~~~~~~~d~dvv~~~~~~~~~~~-~~~l~e~~r~L-kpGG~~i~~ 168 (268)
...++|+|+-. ..-..+. ...+.++-+.+ +||..|+++
T Consensus 81 ----~~~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~sn 120 (286)
T PRK07819 81 ----DFADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASN 120 (286)
T ss_pred ----HhCCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 12367777643 2222233 33456666777 788888865
No 468
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=57.47 E-value=1.1e+02 Score=25.56 Aligned_cols=33 Identities=21% Similarity=0.046 Sum_probs=22.9
Q ss_pred CCEEEEEcCCC-CHHHHHHHHHhCCcEEEEEeCC
Q psy17227 56 DDVFVDLGSGV-GQVVLQVAAATGCKICWGVEKA 88 (268)
Q Consensus 56 ~~~vLDiGCG~-G~~~~~la~~~~~~~v~GiD~s 88 (268)
..+|+=+|||. |........+.|..+++-+|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35799999984 4433333344688779999988
No 469
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=57.45 E-value=84 Score=29.50 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=28.9
Q ss_pred HHHHHHc-CCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCC
Q psy17227 45 SRMIDQI-NATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKAD 89 (268)
Q Consensus 45 ~~ll~~l-~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~ 89 (268)
..++++. +--.+.+||=||.| +|.++.......|...++-+.-+.
T Consensus 166 v~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~ 212 (414)
T COG0373 166 VELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTL 212 (414)
T ss_pred HHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCH
Confidence 3455554 33477889999999 787765554555666566555543
No 470
>PRK07326 short chain dehydrogenase; Provisional
Probab=57.39 E-value=52 Score=27.28 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHh---CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAAT---GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~---~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
.+.++|=+| |+|.++..+++.+ |.. |++++.++. ...+..+.+. .. ..+.++.+|+.+.
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~-V~~~~r~~~--~~~~~~~~l~-------~~-~~~~~~~~D~~~~ 66 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYK-VAITARDQK--ELEEAAAELN-------NK-GNVLGLAADVRDE 66 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCE-EEEeeCCHH--HHHHHHHHHh-------cc-CcEEEEEccCCCH
Confidence 357899999 4777777776543 555 999988763 2222111111 11 4688999998874
No 471
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=57.39 E-value=29 Score=29.87 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=32.6
Q ss_pred HcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 50 QINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 50 ~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
..++.++.+||-.|| +.|..+..+|+..|+. +++++.++.
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~-v~~~~~~~~ 175 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGAR-VIAAASSEE 175 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCE-EEEEeCCHH
Confidence 456788999999998 4677778888888887 899988864
No 472
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=57.37 E-value=1.3e+02 Score=26.23 Aligned_cols=97 Identities=22% Similarity=0.253 Sum_probs=55.2
Q ss_pred cCCCCCCEEEEEc--CCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc--
Q psy17227 51 INATPDDVFVDLG--SGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-- 126 (268)
Q Consensus 51 l~~~~~~~vLDiG--CG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-- 126 (268)
..+.+|.+|+=.| .+.|..+..+|+..|+. +++++.++. .. +.++ ..|. -.++..+-.+..
T Consensus 136 ~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~-v~~~~~~~~--~~----~~~~----~~g~----~~~~~~~~~~~~~~ 200 (327)
T PRK10754 136 YEIKPDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGSAQ--KA----QRAK----KAGA----WQVINYREENIVER 200 (327)
T ss_pred cCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCE-EEEEeCCHH--HH----HHHH----HCCC----CEEEcCCCCcHHHH
Confidence 4577888888775 45777888889988987 899988764 11 1111 1221 112222211111
Q ss_pred ccc--cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 HRE--KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 ~~~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.. +...+|+++ +.+ . ...+.+..+.|+++|+++..
T Consensus 201 ~~~~~~~~~~d~vl-~~~--~---~~~~~~~~~~l~~~g~~v~~ 238 (327)
T PRK10754 201 VKEITGGKKVRVVY-DSV--G---KDTWEASLDCLQRRGLMVSF 238 (327)
T ss_pred HHHHcCCCCeEEEE-ECC--c---HHHHHHHHHHhccCCEEEEE
Confidence 000 112356665 322 1 23566788999999999965
No 473
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=56.67 E-value=87 Score=27.24 Aligned_cols=40 Identities=28% Similarity=0.481 Sum_probs=30.2
Q ss_pred HHcCCCCCCEEEEEcC-C-CCHHHHHHHHHhCCcEEEEEeCCC
Q psy17227 49 DQINATPDDVFVDLGS-G-VGQVVLQVAAATGCKICWGVEKAD 89 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGC-G-~G~~~~~la~~~~~~~v~GiD~s~ 89 (268)
....+.+|.+||=.|+ | .|..+..+|+..|+. ++.+.-++
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~-v~~~~~~~ 174 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGIN-VINLVRRD 174 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCe-EEEEecCH
Confidence 4467889999998886 3 788888889988987 66665544
No 474
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=56.37 E-value=32 Score=30.07 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=18.5
Q ss_pred EEEEEcCCC--CHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 58 VFVDLGSGV--GQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 58 ~vLDiGCG~--G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
+|.=||+|. |.++..++ ..|.. |+++|.++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~-~~g~~-V~~~d~~~~ 34 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLR-SLGHT-VYGVSRRES 34 (279)
T ss_pred eEEEEeecHHHHHHHHHHH-HCCCE-EEEEECCHH
Confidence 455678764 22333332 34554 999999874
No 475
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=56.34 E-value=46 Score=28.30 Aligned_cols=66 Identities=21% Similarity=0.286 Sum_probs=39.4
Q ss_pred EEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc--ccccc
Q psy17227 58 VFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH--REKIT 132 (268)
Q Consensus 58 ~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~--~~~~~ 132 (268)
+++=+||| .++..+|+. .|.. |+.||.++. ...+ .+. ....+..+++|..+... .-...
T Consensus 2 ~iiIiG~G--~vG~~va~~L~~~g~~-Vv~Id~d~~--~~~~---~~~--------~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 2 KIIIIGAG--RVGRSVARELSEEGHN-VVLIDRDEE--RVEE---FLA--------DELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred EEEEECCc--HHHHHHHHHHHhCCCc-eEEEEcCHH--HHHH---Hhh--------hhcceEEEEecCCCHHHHHhcCCC
Confidence 56667775 454455553 3555 999999985 2111 111 12368899999998652 12345
Q ss_pred ceEEEEE
Q psy17227 133 QASIVFV 139 (268)
Q Consensus 133 d~dvv~~ 139 (268)
++|++.+
T Consensus 66 ~aD~vva 72 (225)
T COG0569 66 DADAVVA 72 (225)
T ss_pred cCCEEEE
Confidence 6677665
No 476
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=55.44 E-value=33 Score=31.06 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcccccc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKI 131 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~ 131 (268)
.|+++-=|| +|+++..+|+. +|.. |..-|.++. -..++ ..+.++.. +.+-.
T Consensus 145 ~gktvGIiG--~GrIG~avA~r~~~Fgm~-v~y~~~~~~-~~~~~---------------~~~~~y~~-------l~ell 198 (324)
T COG1052 145 RGKTLGIIG--LGRIGQAVARRLKGFGMK-VLYYDRSPN-PEAEK---------------ELGARYVD-------LDELL 198 (324)
T ss_pred CCCEEEEEC--CCHHHHHHHHHHhcCCCE-EEEECCCCC-hHHHh---------------hcCceecc-------HHHHH
Confidence 466776665 46666666654 5665 899999874 11110 11233332 21223
Q ss_pred cceEEEEEeccccCcCHHHHH-HHHHhcCCCCcEEEEe
Q psy17227 132 TQASIVFVNNFAFGPTVDHAL-KERFQDLKDGARIVSS 168 (268)
Q Consensus 132 ~d~dvv~~~~~~~~~~~~~~l-~e~~r~LkpGG~~i~~ 168 (268)
..+|+|+++..+. ++....+ .+.+..+|||+.||=+
T Consensus 199 ~~sDii~l~~Plt-~~T~hLin~~~l~~mk~ga~lVNt 235 (324)
T COG1052 199 AESDIISLHCPLT-PETRHLINAEELAKMKPGAILVNT 235 (324)
T ss_pred HhCCEEEEeCCCC-hHHhhhcCHHHHHhCCCCeEEEEC
Confidence 3568888765533 3444455 5667899999999843
No 477
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=55.25 E-value=1.1e+02 Score=26.35 Aligned_cols=101 Identities=20% Similarity=0.197 Sum_probs=53.1
Q ss_pred HHcCCCCCCEEEEEcC-CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-
Q psy17227 49 DQINATPDDVFVDLGS-GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE- 126 (268)
Q Consensus 49 ~~l~~~~~~~vLDiGC-G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~- 126 (268)
...++.++.+||=.|+ +.|..+..+|+..|+..++.+.-++. ... .++ ..|. -.++..+-.++.
T Consensus 123 ~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~--~~~----~~~----~~g~----~~~~~~~~~~~~~ 188 (312)
T cd08269 123 RRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPA--RLA----LAR----ELGA----TEVVTDDSEAIVE 188 (312)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH--HHH----HHH----HhCC----ceEecCCCcCHHH
Confidence 3556788888888775 34555666677778765777766653 111 111 1221 112221111111
Q ss_pred -ccc--cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 -HRE--KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 -~~~--~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
+.. +...+|+++-. .. ....+....+.|+++|+++..
T Consensus 189 ~l~~~~~~~~vd~vld~---~g--~~~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 189 RVRELTGGAGADVVIEA---VG--HQWPLDLAGELVAERGRLVIF 228 (312)
T ss_pred HHHHHcCCCCCCEEEEC---CC--CHHHHHHHHHHhccCCEEEEE
Confidence 000 11235566532 11 134577788999999999965
No 478
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=54.18 E-value=36 Score=31.63 Aligned_cols=69 Identities=17% Similarity=0.098 Sum_probs=40.0
Q ss_pred CEEEEEcCCCCHHHHHHHH---HhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-cccccc
Q psy17227 57 DVFVDLGSGVGQVVLQVAA---ATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE-HREKIT 132 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~---~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~-~~~~~~ 132 (268)
++||=|||| +.+..+|. +.+...|+..|.|++ ..++. . .. ...+++..+-|+.+.+ ...-..
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~--~~~~i----~----~~--~~~~v~~~~vD~~d~~al~~li~ 67 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKE--KCARI----A----EL--IGGKVEALQVDAADVDALVALIK 67 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHH--HHHHH----H----hh--ccccceeEEecccChHHHHHHHh
Confidence 468999994 44444433 345346999999974 22221 1 11 1237999999998864 212223
Q ss_pred ceEEEEE
Q psy17227 133 QASIVFV 139 (268)
Q Consensus 133 d~dvv~~ 139 (268)
+.|+|+.
T Consensus 68 ~~d~VIn 74 (389)
T COG1748 68 DFDLVIN 74 (389)
T ss_pred cCCEEEE
Confidence 4455554
No 479
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=54.06 E-value=82 Score=27.72 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHh---CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCcc-ccc
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAAT---GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEH-REK 130 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~---~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~-~~~ 130 (268)
.+++||=.| |+|.++..+++.. |.. |+++..++.. ......... ..+ ...+++++.+|+.+... ..-
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~-V~~~~r~~~~--~~~~~~~~~----~~~-~~~~~~~~~~D~~d~~~~~~~ 74 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYT-INATVRDPKD--RKKTDHLLA----LDG-AKERLKLFKADLLDEGSFELA 74 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCE-EEEEEcCCcc--hhhHHHHHh----ccC-CCCceEEEeCCCCCchHHHHH
Confidence 467899999 5688877777653 554 7777766541 111101000 011 12478999999988542 111
Q ss_pred ccceEEEEEecc
Q psy17227 131 ITQASIVFVNNF 142 (268)
Q Consensus 131 ~~d~dvv~~~~~ 142 (268)
...+|+|+.++.
T Consensus 75 ~~~~d~vih~A~ 86 (325)
T PLN02989 75 IDGCETVFHTAS 86 (325)
T ss_pred HcCCCEEEEeCC
Confidence 123566665543
No 480
>KOG2811|consensus
Probab=54.00 E-value=33 Score=31.63 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHhCCcEEEE---EeCCC
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWG---VEKAD 89 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~G---iD~s~ 89 (268)
++..+++.|||-|.++.+++...+...++= +|-..
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s 219 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKS 219 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhccccEEEEEeecccc
Confidence 446899999999999999998887765555 55544
No 481
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=53.93 E-value=80 Score=26.57 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=37.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHH---hCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAA---TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~---~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
+++++|=.|+ +|+++..+++. .|+. |+.++.+++ .+....+.++ .. ..++.++.+|+.+.
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~-v~~~~r~~~--~~~~~~~~~~----~~---~~~~~~~~~Dl~~~ 72 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAH-VLVNGRNAA--TLEAAVAALR----AA---GGAAEALAFDIADE 72 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCe-EEEEeCCHH--HHHHHHHHHH----hc---CCceEEEEccCCCH
Confidence 4678998885 56666666654 3665 899998864 2222222221 11 23688999999874
No 482
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=53.71 E-value=20 Score=27.99 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=17.1
Q ss_pred EEcCCCC--HHHHHHH--HHhCCcEEEEEeCCCC
Q psy17227 61 DLGSGVG--QVVLQVA--AATGCKICWGVEKADL 90 (268)
Q Consensus 61 DiGCG~G--~~~~~la--~~~~~~~v~GiD~s~~ 90 (268)
|||+..| .....++ ...+..+++++|.+|.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~ 34 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPS 34 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHH
Confidence 8999999 6665553 2233456999999986
No 483
>PRK10637 cysG siroheme synthase; Provisional
Probab=53.53 E-value=1.1e+02 Score=28.89 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCCCHHHHH-HHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227 55 PDDVFVDLGSGVGQVVLQ-VAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~-la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
.|.+||=||.|.=..-.. .....|+. .|++-+++++ +. +.. ..++++++..++.. +...
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~---~~---~l~---------~~~~i~~~~~~~~~----~dl~ 71 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQ---FT---AWA---------DAGMLTLVEGPFDE----SLLD 71 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHH---HH---HHH---------hCCCEEEEeCCCCh----HHhC
Confidence 567899999986554321 11235665 2333355543 11 111 13589999988764 2223
Q ss_pred ceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEE
Q psy17227 133 QASIVFVNNFAFGPTVDHALKERFQDLKDGARIV 166 (268)
Q Consensus 133 d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i 166 (268)
++++|++. .-.++.+..+.+.. +..|.++
T Consensus 72 ~~~lv~~a--t~d~~~n~~i~~~a---~~~~~lv 100 (457)
T PRK10637 72 TCWLAIAA--TDDDAVNQRVSEAA---EARRIFC 100 (457)
T ss_pred CCEEEEEC--CCCHHHhHHHHHHH---HHcCcEE
Confidence 45566552 12334444444443 4446655
No 484
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=53.12 E-value=1.2e+02 Score=26.37 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=30.4
Q ss_pred cCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 51 INATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 51 l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
..+.++.+||=.|. +.|..+..+|+..|.. +++++-++.
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~-vi~~~~~~~ 181 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGAR-VVGIAGSDE 181 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCE-EEEEeCCHH
Confidence 45678899998884 5677788888888886 899887763
No 485
>PRK07904 short chain dehydrogenase; Provisional
Probab=53.05 E-value=1.1e+02 Score=26.05 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=39.8
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHHh---CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 53 ATPDDVFVDLGSGVGQVVLQVAAAT---GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 53 ~~~~~~vLDiGCG~G~~~~~la~~~---~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
...+.+||=.|| +|+++..+|+++ |..+|+.++.++.. .+..+.+.++ ..+ ..+++++++|+.+..
T Consensus 5 ~~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~-~~~~~~~~l~----~~~--~~~v~~~~~D~~~~~ 73 (253)
T PRK07904 5 VGNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDP-RRDAAVAQMK----AAG--ASSVEVIDFDALDTD 73 (253)
T ss_pred cCCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcch-hHHHHHHHHH----hcC--CCceEEEEecCCChH
Confidence 346778999999 467777777642 32348888888741 1222222221 112 237899999998744
No 486
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=52.55 E-value=1.6e+02 Score=25.70 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=56.0
Q ss_pred HcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc-
Q psy17227 50 QINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE- 126 (268)
Q Consensus 50 ~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~- 126 (268)
...+.++++||=.|+ +.|..++.+|+..|.. ++.++-++. .. +.++ ..|. . .++..+-.+..
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~-v~~~~~~~~--~~----~~~~----~~g~--~--~v~~~~~~~~~~ 198 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCH-VIGTCSSDE--KA----EFLK----SLGC--D--RPINYKTEDLGE 198 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCe-EEEEeCcHH--HH----HHHH----HcCC--c--eEEeCCCccHHH
Confidence 346788999998884 6788888888888887 888887753 11 1111 1221 1 11211111110
Q ss_pred -ccc-cccceEEEEEeccccCcCHHHHHHHHHhcCCCCcEEEEe
Q psy17227 127 -HRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSS 168 (268)
Q Consensus 127 -~~~-~~~d~dvv~~~~~~~~~~~~~~l~e~~r~LkpGG~~i~~ 168 (268)
... ....+|+++-. . . ...+....+.|+++|+++..
T Consensus 199 ~~~~~~~~~vd~v~~~-~--g---~~~~~~~~~~l~~~g~~v~~ 236 (329)
T cd08250 199 VLKKEYPKGVDVVYES-V--G---GEMFDTCVDNLALKGRLIVI 236 (329)
T ss_pred HHHHhcCCCCeEEEEC-C--c---HHHHHHHHHHhccCCeEEEE
Confidence 000 00235666532 1 1 25678888999999999854
No 487
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=52.27 E-value=95 Score=23.87 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=21.2
Q ss_pred EEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCC
Q psy17227 58 VFVDLGSG-VGQVVLQVAAATGCKICWGVEKA 88 (268)
Q Consensus 58 ~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s 88 (268)
+|+=+||| .|..........|..+++-+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 37778997 45544443445688789999876
No 488
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=52.26 E-value=1.5e+02 Score=25.40 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=29.7
Q ss_pred HcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 50 QINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 50 ~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
...+.++.+||=.|+ |.|..+..+++..|.. ++.++.++.
T Consensus 139 ~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~-v~~~~~~~~ 180 (328)
T cd08268 139 LAGLRPGDSVLITAASSSVGLAAIQIANAAGAT-VIATTRTSE 180 (328)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEcCCHH
Confidence 456778889998886 4566666677777876 888888763
No 489
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=51.95 E-value=44 Score=28.11 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=24.4
Q ss_pred CCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCC
Q psy17227 56 DDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKA 88 (268)
Q Consensus 56 ~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s 88 (268)
..+|+=|||| .|..........|..+++-+|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4579999998 46655444455688889999988
No 490
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=51.90 E-value=1.1e+02 Score=27.10 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCHH--HHHHHHHhCCcEEEEEeCCCC
Q psy17227 57 DVFVDLGSGVGQV--VLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 57 ~~vLDiGCG~G~~--~~~la~~~~~~~v~GiD~s~~ 90 (268)
++|.=||+|.=+. +..+ ...|.. |+++|.++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~l-a~~G~~-V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVF-ARAGHE-VRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHH-HHCCCe-eEEEeCCHH
Confidence 3577788774332 2222 334665 999999985
No 491
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=51.80 E-value=23 Score=32.73 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=31.1
Q ss_pred HcCCCCCCEEEEEc-CC-CCHHHHHHHHHhC--CcEEEEEeCCCC
Q psy17227 50 QINATPDDVFVDLG-SG-VGQVVLQVAAATG--CKICWGVEKADL 90 (268)
Q Consensus 50 ~l~~~~~~~vLDiG-CG-~G~~~~~la~~~~--~~~v~GiD~s~~ 90 (268)
..++++|++||=+| || .|.++..+|+..| ..+|+++|.++.
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~ 214 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDE 214 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHH
Confidence 35678899999897 44 6777777888764 345999999975
No 492
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=51.70 E-value=68 Score=29.17 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=23.9
Q ss_pred CCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCC
Q psy17227 56 DDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKAD 89 (268)
Q Consensus 56 ~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~ 89 (268)
..+||=|||| .|..........|..+++-+|-+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 3579999998 455444444456887799999874
No 493
>PRK06949 short chain dehydrogenase; Provisional
Probab=51.68 E-value=81 Score=26.46 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=37.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHHh---CCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCC
Q psy17227 55 PDDVFVDLGSGVGQVVLQVAAAT---GCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTE 125 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~la~~~---~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l 125 (268)
.++++|=.| |+|+++..+++.+ |+. |+.++.+++ .+......++. ...++.++.+|+.+.
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~-Vi~~~r~~~--~~~~~~~~l~~-------~~~~~~~~~~D~~~~ 70 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAK-VVLASRRVE--RLKELRAEIEA-------EGGAAHVVSLDVTDY 70 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCE-EEEEeCCHH--HHHHHHHHHHh-------cCCcEEEEEecCCCH
Confidence 467899999 6677777666553 554 899988864 22222222211 124688899998864
No 494
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=51.56 E-value=1.4e+02 Score=26.31 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=29.5
Q ss_pred HHHcCCCCCCEEEEEcCC-CCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 48 IDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 48 l~~l~~~~~~~vLDiGCG-~G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
+...+++++++||=.|+| .|..+..+|+..|...++.++-++.
T Consensus 154 ~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~ 197 (341)
T cd08262 154 VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPE 197 (341)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence 345567889998888753 2334556677788876788887764
No 495
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=51.36 E-value=30 Score=33.29 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCHHHHH-HHHHhCCcEEEEEeCCCCh
Q psy17227 57 DVFVDLGSGVGQVVLQ-VAAATGCKICWGVEKADLP 91 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~-la~~~~~~~v~GiD~s~~~ 91 (268)
.+|-=||+|+=+..+. .+...|.. |+..|.+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~-V~l~d~~~e~ 40 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQ-VLLYDIRAEA 40 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHH
Confidence 4577889985333222 22335766 9999999873
No 496
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=51.16 E-value=66 Score=28.47 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCHHHH-HHHHHhCC-cEEEEEeCCCC
Q psy17227 57 DVFVDLGSGVGQVVL-QVAAATGC-KICWGVEKADL 90 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~-~la~~~~~-~~v~GiD~s~~ 90 (268)
++|.=||+|.-+.+. ......|. ..|+++|.++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~ 42 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAE 42 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 568888987633222 22223443 35999999874
No 497
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=51.06 E-value=46 Score=31.81 Aligned_cols=34 Identities=12% Similarity=-0.160 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCHHHHHHHHH-hC-CcEEEEEeCCCC
Q psy17227 57 DVFVDLGSGVGQVVLQVAAA-TG-CKICWGVEKADL 90 (268)
Q Consensus 57 ~~vLDiGCG~G~~~~~la~~-~~-~~~v~GiD~s~~ 90 (268)
++|.=||+|..++...++-. .| ...|+|+|+++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 46778899888876554332 23 134999999985
No 498
>KOG1269|consensus
Probab=51.04 E-value=26 Score=32.25 Aligned_cols=65 Identities=14% Similarity=-0.036 Sum_probs=42.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHHhCCcEEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCc
Q psy17227 56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEE 126 (268)
Q Consensus 56 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~ 126 (268)
+.++||+||+.+.....++..++..+-.|+++..+.++.+.... . ..+.......+..||+.-.+
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~--~----~~~~~~i~~~i~~gd~~~~~ 245 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKK--P----NSEHVDILLEIEGGDALPAE 245 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccC--C----CcccccccCceeccccccce
Confidence 55899999999999998898888877799999986444333110 0 00011235677777765543
No 499
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=50.82 E-value=81 Score=26.93 Aligned_cols=82 Identities=12% Similarity=0.251 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCCCHHHHH-HHHHhCCc-EEEEEeCCCChhHHHHHHHHHHHHHHHhccccccEEEEEcCCCCCccccccc
Q psy17227 55 PDDVFVDLGSGVGQVVLQ-VAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKIT 132 (268)
Q Consensus 55 ~~~~vLDiGCG~G~~~~~-la~~~~~~-~v~GiD~s~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~~gD~~~l~~~~~~~ 132 (268)
++.+||=||.|.=..-.. ....+|+. .|++-+++++...++ ..++++++..++..-. ..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~---------------~~~~i~~~~r~~~~~d----l~ 84 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLK---------------KYGNLKLIKGNYDKEF----IK 84 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHH---------------hCCCEEEEeCCCChHH----hC
Confidence 567899999987765422 22245665 445557776422111 1357999998775422 23
Q ss_pred ceEEEEEeccccCcCHHHHHHHHHh
Q psy17227 133 QASIVFVNNFAFGPTVDHALKERFQ 157 (268)
Q Consensus 133 d~dvv~~~~~~~~~~~~~~l~e~~r 157 (268)
.+++|++. .-.++....+.+..+
T Consensus 85 g~~LViaA--TdD~~vN~~I~~~a~ 107 (223)
T PRK05562 85 DKHLIVIA--TDDEKLNNKIRKHCD 107 (223)
T ss_pred CCcEEEEC--CCCHHHHHHHHHHHH
Confidence 45555552 123445555555443
No 500
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=50.70 E-value=1.6e+02 Score=25.49 Aligned_cols=43 Identities=28% Similarity=0.495 Sum_probs=33.4
Q ss_pred HHHHcCCCCCCEEEEEcC--CCCHHHHHHHHHhCCcEEEEEeCCCC
Q psy17227 47 MIDQINATPDDVFVDLGS--GVGQVVLQVAAATGCKICWGVEKADL 90 (268)
Q Consensus 47 ll~~l~~~~~~~vLDiGC--G~G~~~~~la~~~~~~~v~GiD~s~~ 90 (268)
+.....+.++.+||=.|. +.|..+..+|+..|.. +++++.++.
T Consensus 134 ~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~-v~~~~~~~~ 178 (324)
T cd08244 134 LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGAT-VVGAAGGPA 178 (324)
T ss_pred HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCHH
Confidence 344567788999988884 6777888888988887 899987764
Done!