RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17227
(268 letters)
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 236 bits (602), Expect = 9e-76
Identities = 131/185 (70%), Positives = 155/185 (83%), Gaps = 1/185 (0%)
Query: 2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I T DD+FVD
Sbjct: 120 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 179
Query: 62 LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRLVKG 120
LGSGVGQVVLQVAAAT CK +GVEKAD+PAKYAE M F++WM+WYGK+H E+ L +G
Sbjct: 180 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
DFL+EE RE+I S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI
Sbjct: 240 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 299
Query: 181 RNLTD 185
RNL+D
Sbjct: 300 RNLSD 304
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 207 bits (528), Expect = 8e-65
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 9/205 (4%)
Query: 2 PSRGLLRHIIQQTYNQSV-TEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFV 60
R + + Y +S+ + KL Y+ FS +VYGE + +S + Q D F+
Sbjct: 188 IPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFM 247
Query: 61 DLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE-MHTVFKRWMQWYGKRHGEFRL-V 118
DLGSGVG V+Q A GC + +G E D + + K+ + YG R +
Sbjct: 248 DLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 307
Query: 119 KGDFLTEE-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFR 177
K F+ E I Q ++ VNNF F ++ +++ Q K G +I+S KS L ++
Sbjct: 308 KKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLTYQ 367
Query: 178 ITDRNLTDGG-----KKVPPGRGCV 197
I N+ + ++ V
Sbjct: 368 INFYNVENIFNRLKVQRYDLKEDSV 392
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 8e-07
Identities = 40/291 (13%), Positives = 85/291 (29%), Gaps = 63/291 (21%)
Query: 11 IQQTYNQS-------VTEPEKL-NVYQPFSP-FVYGETSFDLISRMIDQINATPDDVFVD 61
I+ Q + + ++L N Q F+ V + + + + ++ + V +D
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLID 156
Query: 62 LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGD 121
G G+ + A C + +F W+ +
Sbjct: 157 GVLGSGKTWV---ALDVCL--------SYKVQCKMDFKIF--WLN-LKNCNS-------- 194
Query: 122 FLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDG-ARIVSSKSFC-------- 172
E E + + N+ +K R ++ R++ SK +
Sbjct: 195 --PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 173 --------PLNFR----IT--DRNLTDGGKKVPPGRGCVDQTLTSLSTATALPVSELHTE 218
N +T + +TD +D +L+ + + +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 219 LEIPPTPAET----PYSLQMLLDILRNQYLAMIERLKSEKYKKEVEDQIEI 265
P E P L ++ + +R+ LA + K K + IE
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRD-GLATWDNWKHVNCDK-LTTIIES 361
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 2e-06
Identities = 51/320 (15%), Positives = 99/320 (30%), Gaps = 111/320 (34%)
Query: 7 LRHIIQQTYNQSVTE-----PEKLN--VYQPFSPFVYGETSFDLISRMIDQINATPDDVF 59
LR + QTY+ V + E L+ + +++ ++ + TPD +
Sbjct: 173 LRDL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-WLENPSNTPDKDY 230
Query: 60 VD-----------------------LGSGVGQVVLQVAAATGCKICWGVEKADLPAK--- 93
+ LG G++ + ATG G+ A A+
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ--GLVTAVAIAETDS 288
Query: 94 YAEMHTVFK---RWMQWYGKR--------------------HGEFR-----LVKGDFLTE 125
+ + + + G R + E + LT+
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN--LTQ 346
Query: 126 EHREKITQASIVFVNNFAFGPTVDH---ALKERFQDLKDGAR--IVSS--KSFCPLNFRI 178
E + + N + P + L +GA+ +VS +S LN +
Sbjct: 347 EQVQDY----VNKTN--SHLPAGKQVEIS-------LVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 179 TDRNLTDGGKKVPPGRGCVDQTLTSLS------TATALPVSE-LHTELEIPPTPAETPYS 231
R K P G +DQ+ S + LPV+ H+ L +P +
Sbjct: 394 --RKA-----KAPSG---LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD------ 437
Query: 232 LQMLLDILRNQYLAMIERLK 251
+ D+++N + ++
Sbjct: 438 -LINKDLVKNNVSFNAKDIQ 456
Score = 40.0 bits (93), Expect = 6e-04
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 25/93 (26%)
Query: 10 IIQQTYNQSVT-EPEKLN--VYQPFSPFVYG----ETSFDLISRMIDQI--------NAT 54
I + +V+ + + VY F G S + R++D I T
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFD----GSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 55 PDDV--FVDLG----SGVGQVVLQVAAATGCKI 81
+D G SG+G + + TG ++
Sbjct: 495 QFKATHILDFGPGGASGLGVLTHRNKDGTGVRV 527
Score = 40.0 bits (93), Expect = 7e-04
Identities = 42/245 (17%), Positives = 72/245 (29%), Gaps = 89/245 (36%)
Query: 1 TPS-----RGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATP 55
PS L + +Q K N + P V IS +N
Sbjct: 334 VPSPMLSISNLTQEQVQDYV-------NKTNSHLPAGKQVE-------ISL----VNG-A 374
Query: 56 DDVFV------DLGSGVGQVVLQVAAATGC---KICWGVEKAD-----LP--AKYAEMHT 99
+ V L G+ + + A +G +I + K LP + + H+
Sbjct: 375 KN-LVVSGPPQSL-YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF---HS 429
Query: 100 -------------VFKRWMQWYGKR------H---GE-FRLVKGDFLTEEHREKITQASI 136
+ K + + K G R++ G ++E + I + +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS-ISERIVDCIIRLPV 488
Query: 137 VF--VNNFA------FGPTVDHALKERFQDLKDG--ARIVSSKSFCPLNFRITDRNLTD- 185
+ F FGP L KDG R++ + + D N D
Sbjct: 489 KWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL--------DINPDDD 540
Query: 186 -GGKK 189
G K+
Sbjct: 541 YGFKQ 545
Score = 35.8 bits (82), Expect = 0.014
Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 51/171 (29%)
Query: 105 MQWYGKRHGEFRLV--KGD-FLTEEHREKITQASIVFVN----NFAFGPTVDHALKER-- 155
M Y K + V + D + + I IV N FG ++E
Sbjct: 1633 MDLY-KTSKAAQDVWNRADNHFKDTYGFSILD--IVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 156 ---FQDLKDGARIVSSKSFCPLNFRITDRNLTDGGKKVPPGRGCVDQT------LTSLST 206
F+ + DG ++ + K F +N T T +G + T LT +
Sbjct: 1690 AMIFETIVDG-KLKTEKIFKEINEHSTS--YTFRS---E--KGLLSATQFTQPALTLMEK 1741
Query: 207 ATALPVSELHTELEIPPTPA-------ETPYS----------LQMLLDILR 240
A +L ++ IP E Y+ ++ L++++
Sbjct: 1742 A---AFEDLKSKGLIPADATFAGHSLGE--YAALASLADVMSIESLVEVVF 1787
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; 1.80A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.1
Length = 351
Score = 38.3 bits (90), Expect = 0.002
Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 29/114 (25%)
Query: 33 PFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPA 92
P + ++++ D +F L +G + V G KI DL A
Sbjct: 59 PSTLENSILSEFD--PEKVSKNCDVLFTALPAGASYDL--VRELKGVKII------DLGA 108
Query: 93 KYAEMHTVFKR------WMQWYGKRHGEFRLVK---GDFLTEEHREKITQASIV 137
+ R + +WYGK + +K G L E HRE+I A +V
Sbjct: 109 DF--------RFDDPGVYREWYGKELSGYENIKRVYG--LPELHREEIKNAQVV 152
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 37.1 bits (86), Expect = 0.004
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 28 YQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKI 81
+ + + L MI ++ D +D+G G+G+ +++A A ++
Sbjct: 34 EDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRV 87
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 34.4 bits (79), Expect = 0.024
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKI 81
+ +++ I + +D+GSG+G + + G
Sbjct: 40 GLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHT 81
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 33.3 bits (76), Expect = 0.045
Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 22/130 (16%)
Query: 41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTV 100
F +++ + ++ G G G + ++ A G + +G+E + EM +
Sbjct: 31 FAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTV-YGIEPS------REMRMI 82
Query: 101 FKRWMQWYGKRHGEFRLVKGDFLTEEHREK----ITQASIVFVNNFAFGPTVDHALKERF 156
K K EF + +GDFL+ E ++ + + + + A+ +
Sbjct: 83 AKE------KLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLTD----DEKNVAIAKYS 132
Query: 157 QDLKDGARIV 166
Q L G +IV
Sbjct: 133 QLLNKGGKIV 142
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 33.2 bits (76), Expect = 0.049
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKI 81
+I++ T +D+GSG G + + +A + I
Sbjct: 35 NIINRFGITAGTC-IDIGSGPGALSIALAKQSDFSI 69
>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural
genomics, protein structure initiative, CENT eukaryotic
structural genomics; 2.19A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A
Length = 359
Score = 33.7 bits (78), Expect = 0.051
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 104 WMQWYGKRHGEFRLVK----GDFLTEEHREKITQASIV 137
+ +WYG+ H L K G LTE RE I +A +V
Sbjct: 123 YEEWYGQPHKAVELQKEVVYG--LTEILREDIKKARLV 158
>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC,
essential gene, amino-acid biosynthesis, arginine
biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella
flexneri} PDB: 2g17_A
Length = 337
Score = 33.3 bits (77), Expect = 0.066
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 26/100 (26%)
Query: 48 IDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKR---- 103
I + + D VF+ V + GC + DL + R
Sbjct: 69 ISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVF------DLSGAF--------RVNDA 114
Query: 104 --WMQWYGKRHGEFRLVK----GDFLTEEHREKITQASIV 137
+ ++YG H L++ G L E K+ +A+++
Sbjct: 115 TFYEKYYGFTHQYPELLEQAAYG--LAEWCGNKLKEANLI 152
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 32.4 bits (74), Expect = 0.10
Identities = 16/125 (12%), Positives = 41/125 (32%), Gaps = 12/125 (9%)
Query: 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFK 102
+++ + +D+G+G G + ++ G K + + D+ EM
Sbjct: 26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAI---DV---QEEMVNYAW 79
Query: 103 RWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFV-NNFAFGPTVDHALKERFQDLKD 161
+ G ++ E + + + + + F + L+E + K
Sbjct: 80 EKVNKLGLKNVEVLKSEENKIPLPD-NTVDFIFMAFTFHEL---SEPLKFLEELKRVAKP 135
Query: 162 GARIV 166
A +
Sbjct: 136 FAYLA 140
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 32.1 bits (72), Expect = 0.12
Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 5/133 (3%)
Query: 37 GETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE 96
G + DL + +I D V +DLG+G G+ + ++A G++
Sbjct: 6 GTKTVDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDIS 65
Query: 97 MHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFV-NNFAFGPTVDHA--LK 153
+ K G + F + + L E + SI+F + L
Sbjct: 66 KKIIKKP--SKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILS 123
Query: 154 ERFQDLKDGARIV 166
K A
Sbjct: 124 NVADLAKKEAHFE 136
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 32.0 bits (72), Expect = 0.17
Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 6/125 (4%)
Query: 48 IDQINATPDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMH--TVFKRW 104
+ + +DLG G G+ V + G GV+ D + A + +++
Sbjct: 76 LPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKF 135
Query: 105 MQWYGKRHGEFRLVKGDFLTEEHREKITQASI-VFVNNFAFG--PTVDHALKERFQDLKD 161
+ + F + L E + +S+ + ++N KE + L+D
Sbjct: 136 FGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRD 195
Query: 162 GARIV 166
G +
Sbjct: 196 GGELY 200
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal,
antibiotic resistance, aminoglycoside,
S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces
SP}
Length = 218
Score = 31.6 bits (71), Expect = 0.17
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 35 VYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVE 86
V G+ + +Q+ + DDV +D+G+G G+ +VA ++ ++
Sbjct: 7 VVGKRVQEFSDAEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALD 58
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 31.7 bits (72), Expect = 0.18
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKI 81
L S + +DLG+G G + G I
Sbjct: 70 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSI 108
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 30.7 bits (69), Expect = 0.31
Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 21/124 (16%)
Query: 55 PDDVFVDLGSGVGQVVLQVAAATGCK-ICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG 113
D VD G G +A+ G +G + D + + +
Sbjct: 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQD------KAIANTTKKLTDLNLI-D 74
Query: 114 EFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDH-----------ALKERFQDLKDG 162
L+K + +++F N + P+ DH AL + + L G
Sbjct: 75 RVTLIKDGHQNMDKYIDCPVKAVMF--NLGYLPSGDHSISTRPETTIQALSKAMELLVTG 132
Query: 163 ARIV 166
I
Sbjct: 133 GIIT 136
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 30.8 bits (69), Expect = 0.37
Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 11/122 (9%)
Query: 55 PDDVFVDLGSGVGQVVLQVAAA--TGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRH 112
P V + G +L + + G ++ G++ E R +
Sbjct: 118 PGCVVASVPCGWMSELLALDYSACPGVQLV-GIDYD------PEALDGATRLAAGHALAG 170
Query: 113 GEFRLVKGDFLTEEHREKITQASIVFVNNFAFGP-TVDHALKERFQDLKDGARIVSSKSF 171
+ L + D + RE + +N + V + +Q LK G +V+S
Sbjct: 171 -QITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLT 229
Query: 172 CP 173
P
Sbjct: 230 PP 231
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 30.9 bits (70), Expect = 0.37
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKI 81
+ + P +DLGSG G+++ A G
Sbjct: 27 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITG 62
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 30.9 bits (70), Expect = 0.39
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 28 YQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG 78
YQ FV + ++ +N P + +DLG G GQ+ ++A +
Sbjct: 35 YQDKHSFV-----WQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGA 80
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 30.6 bits (69), Expect = 0.43
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 35 VYGETSFDLISRMIDQI-----NATPDDVFVDLGSGVGQVVLQVAAATGCKI 81
L S + + A PDD VD G G G ++ G ++
Sbjct: 92 KVIAELHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRV 143
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens
str}
Length = 260
Score = 30.6 bits (69), Expect = 0.47
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 51 INATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE 96
+ DLG+G G + VAA E++ A++A
Sbjct: 32 VADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFAR 77
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 30.3 bits (68), Expect = 0.55
Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 12/113 (10%)
Query: 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG 113
D V D+G+G V ++ + + +E+ + + ++ + R+
Sbjct: 39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERN------PQYLGFIRDNLKKFVARN- 91
Query: 114 EFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIV 166
LV+ E + + VF+ G ++ + + LK IV
Sbjct: 92 -VTLVEAFA--PEGLDDLPDPDRVFIG--GSGGMLEEIIDAVDRRLKSEGVIV 139
>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer,
rossmann fold, structural genomics, PSI, protein
structure initiative; 1.58A {Mycobacterium tuberculosis}
PDB: 2i3a_A* 2i3g_A
Length = 352
Score = 30.3 bits (69), Expect = 0.64
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
Query: 104 WMQWYGKRH-GEFRLVKGDFLTE--EHREKITQASIV 137
W ++YG H G + G L E R+++ +
Sbjct: 121 WERFYGSSHAGSW--PYG--LPELPGARDQLRGTRRI 153
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase,
BFR250, NESG, structural genomics, PSI-2; HET: SAM;
1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A
3t7s_A* 3t7r_A* 3t7t_A*
Length = 267
Score = 30.2 bits (68), Expect = 0.66
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 40 SFDLISRMIDQI-NATPDDVFVDLGSGVGQVVLQVAAATGCKI 81
S ++ + + I N T + D+G G G + +A ++
Sbjct: 30 SPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQV 72
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 29.6 bits (67), Expect = 0.74
Identities = 8/39 (20%), Positives = 11/39 (28%)
Query: 40 SFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG 78
S + + I V VD G G G +
Sbjct: 2 SLERPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT 40
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid
biosynthesis, structural genomics, riken structur
genomics/proteomics initiative; 2.01A {Thermus
thermophilus}
Length = 345
Score = 29.8 bits (68), Expect = 0.76
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 29/93 (31%)
Query: 56 DDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKR------WMQWYG 109
D + + L GV +A + DL A + R + ++YG
Sbjct: 70 DILVLALPHGVFAREFDRYSALAPVLV------DLSADF--------RLKDPELYRRYYG 115
Query: 110 KRH-----GEFRLVKGDFLTEEHREKITQASIV 137
+ G F V + E +RE + A +
Sbjct: 116 EHPRPDLLGRF--VYA--VPELYREALKGADWI 144
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 29.9 bits (68), Expect = 0.82
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 64 SGVGQVVLQVAAATGCK---ICWGVEKADL 90
G GQ +Q++ C C EK+
Sbjct: 174 GGTGQFAMQLSKKAKCHVIGTCSSDEKSAF 203
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 29.8 bits (66), Expect = 0.84
Identities = 6/57 (10%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 26 NVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKI 81
+ ++ F + +L+ + V +G G + + ++ G ++
Sbjct: 93 SPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRV 149
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 29.6 bits (66), Expect = 0.90
Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 18/145 (12%)
Query: 28 YQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAA--ATGCKICWGV 85
Y P Y + +I D + VD+G G G LQ+A +I G
Sbjct: 14 YSSSRP-SYPSDFYKMIDEYHDG----ERKLLVDVGCGPGTATLQMAQELKPFEQI-IGS 67
Query: 86 EKADLPAKYAEMHTVFKRWMQWYGKRHG--EFRLVKGDFLTEEHREKITQAS--IVFVNN 141
+ + A M + + + F++ D + + + ++
Sbjct: 68 D----LS--ATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVE 121
Query: 142 FAFGPTVDHALKERFQDLKDGARIV 166
A + + + +L+ I
Sbjct: 122 CAHWFDFEKFQRSAYANLRKDGTIA 146
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 29.2 bits (66), Expect = 0.98
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 21/116 (18%)
Query: 55 PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEK----ADLPAKYAEMHTVFKRWMQWYGK 110
+DV VD+G G G V L+ A ++ + +++ + H +
Sbjct: 33 KNDVAVDVGCGTGGVTLE-LAGRVRRV-YAIDRNPEAISTTEMNLQRHGLGDN------- 83
Query: 111 RHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIV 166
L++GD E KI I V G + L+ LK G RI+
Sbjct: 84 ----VTLMEGDAP--EALCKIPDIDIAVVG--GSGGELQEILRIIKDKLKPGGRII 131
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 29.6 bits (66), Expect = 1.0
Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 28/137 (20%)
Query: 41 FDLISRMIDQINAT----------PDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADL 90
D+ M Q N ++V VD+ +G+G + +A + K+ + +
Sbjct: 95 LDVAKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAI----- 149
Query: 91 PAKYAEMHTVFKRWMQWYGKRHGEFRLVK--GDFLTEEHREKITQASIVFVNNFAFGPTV 148
E + ++ K + ++ D E ++ A V +
Sbjct: 150 -----EKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDV---ADRVIMGYV---HKT 198
Query: 149 DHALKERFQDLKDGARI 165
L + F+ LKD I
Sbjct: 199 HKFLDKTFEFLKDRGVI 215
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 29.4 bits (66), Expect = 1.1
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG 78
MI + +D+G+G G L +
Sbjct: 11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ 44
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 29.4 bits (66), Expect = 1.1
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 37 GETSFDLISRMIDQI-NATPDDVFVDLGSGVGQVVLQVAAATGCKI 81
G S + + + I T D D+G G G L +A +I
Sbjct: 27 GPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQI 72
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 28.9 bits (64), Expect = 1.4
Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 10/128 (7%)
Query: 41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTV 100
I + + + D + LG+ G VA I + +E A +
Sbjct: 60 AAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYA---------PRI 110
Query: 101 FKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLK 160
+ + +R ++ +E+ + + +++ + A + +K LK
Sbjct: 111 MRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY-EDVAQPNQAEILIKNAKWFLK 169
Query: 161 DGARIVSS 168
G + +
Sbjct: 170 KGGYGMIA 177
>3lpm_A Putative methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium, nysgxrc; 2.40A {Listeria
monocytogenes}
Length = 259
Score = 29.0 bits (65), Expect = 1.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 60 VDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAE 96
+DL SG G + L ++ T KI GVE + A A+
Sbjct: 54 IDLCSGNGIIPLLLSTRTKAKIV-GVEIQERLADMAK 89
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase
(AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB:
2j3i_A* 2j3j_A* 2j3k_A*
Length = 345
Score = 29.1 bits (66), Expect = 1.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 56 DDVFVDLGSG-VGQVVLQVAAATGCK---ICWGVEKADL 90
+ V+V SG VGQ+V Q+A GC EK DL
Sbjct: 157 ETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDL 195
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit
DHAM; mixed alpha beta structure, glycerol metabolism;
1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Length = 131
Score = 27.9 bits (62), Expect = 1.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 39 TSFDLISRMIDQINATPDDVFVDLGSGV 66
TSFD + I++ A F DLGS
Sbjct: 44 TSFDRVMNAIEENEADNLLTFFDLGSAR 71
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 28.6 bits (64), Expect = 1.8
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG 113
++ D+G G G V ++ G + +E A+ ++ + YG
Sbjct: 54 RRGELLWDIGGGSGSVSVE-WCLAGGRA-ITIEPR------ADRIENIQKNIDTYGLSPR 105
Query: 114 EFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIV 166
R V+G + VF+ D + L G RIV
Sbjct: 106 -MRAVQGTAP--AALADLPLPEAVFIGGGGSQALYDRLW----EWLAPGTRIV 151
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto
reductase; rossmann fold, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Cavia
porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A*
2dm6_A* 1zsv_A 2y05_A*
Length = 333
Score = 28.7 bits (65), Expect = 1.9
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 56 DDVFVDLGSG-VGQVVLQVAAATGCK---ICWGVEKADL 90
+ V V +G VG VV Q+A GCK EK
Sbjct: 147 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAY 185
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 28.3 bits (64), Expect = 2.0
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEK 87
DDV VD+G G G + V A CK + ++
Sbjct: 34 NKDDVVVDVGCGSGGM--TVEIAKRCKFVYAIDY 65
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 27.9 bits (62), Expect = 3.4
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 35 VYGETSFDLISR-MIDQINATPDDVFVDLGSGVGQVVLQVAAA 76
V+ T D+ +R + + + VDLG G G + L +
Sbjct: 201 VFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDK 243
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 27.8 bits (62), Expect = 3.6
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATG 78
+++++ ++ +D+ +G G V A
Sbjct: 26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK 60
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 28.0 bits (63), Expect = 3.7
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 58 VFVDLGSG-VGQVVLQVAAATGCK----ICWGVEKADL 90
+ V +G G V Q+ GC IC EK L
Sbjct: 164 MVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCIL 201
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1;
HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 27.2 bits (60), Expect = 5.1
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 61 DLGSGVGQVVLQVAAATGCKI 81
D G+G L + G K
Sbjct: 29 DCGAGGDLPPLSIFVEDGYKT 49
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 27.6 bits (62), Expect = 5.1
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 48 IDQINATPDDVFVDLGSG-VGQVVLQVAAATGCKI 81
+ + +G+G +G V + A A G +
Sbjct: 161 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFV 195
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM
barrel), structural genomics, PSI-2, structure
initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens
str}
Length = 344
Score = 27.3 bits (61), Expect = 5.3
Identities = 16/126 (12%), Positives = 30/126 (23%), Gaps = 35/126 (27%)
Query: 44 ISRMIDQINATPDDVFV-----DL---------GSGVGQVVLQVAAATGCKICWGVEKAD 89
+ + I + D+V + +G + V +C + A
Sbjct: 193 MRYAAENITSRDDEVTLMIGVDTAVVHGFVNCGATGAITGIGNVLPKEVIHLCKLSQAAA 252
Query: 90 ----------LPAKYAEMHTVF-----------KRWMQWYGKRHGEFRLVKGDFLTEEHR 128
L + A K M G + + D LT+ R
Sbjct: 253 KGDADARARALELEQALAVLSSFDEGPDLVLYFKYMMVLKGDKEYTLHFNETDALTDSQR 312
Query: 129 EKITQA 134
+
Sbjct: 313 GYVEAQ 318
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 27.3 bits (60), Expect = 5.4
Identities = 14/93 (15%), Positives = 22/93 (23%), Gaps = 18/93 (19%)
Query: 39 TSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKIC-WGVEKADLPAKYAEM 97
T +++ M+ A ++ G + A G GVE
Sbjct: 23 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW 82
Query: 98 HTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREK 130
+ DFL E E
Sbjct: 83 -----------------AEGILADFLLWEPGEA 98
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 26.7 bits (59), Expect = 5.7
Identities = 19/113 (16%), Positives = 32/113 (28%), Gaps = 12/113 (10%)
Query: 54 TPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHG 113
P + D+G G G + ++ +T E + E G
Sbjct: 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEIS------EERRERILSNAINLGVSD- 76
Query: 114 EFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIV 166
V+ ++F+ P V A +R L G R+V
Sbjct: 77 -RIAVQQGAPRAFDDVP-DNPDVIFIGGGLTAPGVFAAAWKR---LPVGGRLV 124
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 27.3 bits (60), Expect = 5.9
Identities = 9/70 (12%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYA----EMHT 99
+ ++N + ++ G+G G ++ ++ G + E + K A +
Sbjct: 80 SFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTF--EAVEEFYKTAQKNLKKFN 137
Query: 100 VFKRWMQWYG 109
+ K +
Sbjct: 138 LGKNVKFFNV 147
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 27.2 bits (61), Expect = 7.6
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 242 QYLAMIERLKSEKYKKEVEDQI 263
QYLA + +E QI
Sbjct: 194 QYLASVAGRNQANGSGVLEQQI 215
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 27.0 bits (59), Expect = 7.8
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 51 INATPDDVFVDLGSGVGQVVLQVAAATGCKIC 82
+ + + VD G+ +G+ + + T K
Sbjct: 222 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFE 253
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 106
Score = 25.5 bits (56), Expect = 8.3
Identities = 10/53 (18%), Positives = 14/53 (26%), Gaps = 19/53 (35%)
Query: 95 AEMHTVFKRWMQWYGKR---HGEFRLVKGDFLTEEHREKITQASIVFVNNFAF 144
A F + Y K E ++ R I F NN +
Sbjct: 19 AHFQDAFSSFQAMYAKSYATEEE----------KQRRYAI------FKNNLVY 55
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase
activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1
c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Length = 888
Score = 26.7 bits (60), Expect = 8.8
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 18/47 (38%)
Query: 153 KERFQDLKDGARIVSSKSFCPLNFRITDRNLTDGGKKVPPGRGCVDQ 199
+ERF+ LK S++F N RI +PPG G + Q
Sbjct: 150 RERFEFLK-----WGSQAFH--NMRI-----------IPPGSGIIHQ 178
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 26.8 bits (59), Expect = 9.4
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 38 ETSFDLISRMIDQINATP--DDVFVDLGSGVGQVVLQVAAA 76
E S+ I +I I D++ VDL + L++ +
Sbjct: 241 EISYADIDTLIGNIQGMDNYDEIIVDLPFSLEIEKLKLLSK 281
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 26.4 bits (58), Expect = 9.5
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGV 85
++ Q+ DLG G G + G + G+
Sbjct: 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGI 63
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 26.9 bits (60), Expect = 9.7
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 242 QYLAMIERLKSEKYKKEVEDQI 263
QYLA + +E QI
Sbjct: 194 QYLASVAGRNQANGSGVLEQQI 215
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.402
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,133,065
Number of extensions: 248572
Number of successful extensions: 754
Number of sequences better than 10.0: 1
Number of HSP's gapped: 746
Number of HSP's successfully gapped: 64
Length of query: 268
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 176
Effective length of database: 4,133,061
Effective search space: 727418736
Effective search space used: 727418736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)