RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17227
(268 letters)
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 168 bits (427), Expect = 2e-51
Identities = 131/189 (69%), Positives = 155/189 (82%), Gaps = 1/189 (0%)
Query: 2 PSRGLLRHIIQQTYNQSVTEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
PS GLLRHI+QQ YN SVT+PEKLN Y+PFSP VYGETSFDL+++MID+I T DD+FVD
Sbjct: 98 PSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVD 157
Query: 62 LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYA-EMHTVFKRWMQWYGKRHGEFRLVKG 120
LGSGVGQVVLQVAAAT CK +GVEKAD+PAKYA M F++WM+WYGK+H E+ L +G
Sbjct: 158 LGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 217
Query: 121 DFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRITD 180
DFL+EE RE+I S++FVNNFAFGP VDH LKERF ++K+G RIVSSK F PLNFRI
Sbjct: 218 DFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINS 277
Query: 181 RNLTDGGKK 189
RNL+D G
Sbjct: 278 RNLSDIGTI 286
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 163 bits (414), Expect = 1e-48
Identities = 61/259 (23%), Positives = 104/259 (40%), Gaps = 25/259 (9%)
Query: 3 SRGLLRHIIQQTYNQSV-TEPEKLNVYQPFSPFVYGETSFDLISRMIDQINATPDDVFVD 61
R + + Y +S+ + KL Y+ FS +VYGE + +S + Q D F+D
Sbjct: 163 PRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMD 222
Query: 62 LGSGVGQVVLQVAAATGCKICWGVEKADLPAKYA-EMHTVFKRWMQWYGKRHGEFRL-VK 119
LGSGVG V+Q A GC + +G E D + + K+ + YG R +K
Sbjct: 223 LGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282
Query: 120 GDFLTEE-HREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNFRI 178
F+ E I Q ++ VNNF F ++ +++ Q K G +I+S KS L ++I
Sbjct: 283 KSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLTYQI 342
Query: 179 TDRNLTDGGKKVPPGRGCVDQTLTSLSTATALPVSELHT-ELEIPPTPAETPYSLQMLLD 237
N+ + L V E + T + Y + +++
Sbjct: 343 NFYNVENI--------------------FNRLKVQRYDLKEDSVSWTHSGGEYYISTVME 382
Query: 238 ILRNQYLAMIERLKSEKYK 256
+ + R + +
Sbjct: 383 DVDESLFSPAARGRRNRGT 401
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 38.6 bits (89), Expect = 4e-04
Identities = 17/126 (13%), Positives = 32/126 (25%), Gaps = 11/126 (8%)
Query: 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKI-CWGVEKADLPAKYAEMHTVFK 102
I + P + LG G V+ G + +G+E + +
Sbjct: 62 IMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV--- 118
Query: 103 RWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDG 162
+ + GD E + V + A + LK G
Sbjct: 119 -------EERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRG 171
Query: 163 ARIVSS 168
+ +
Sbjct: 172 GYGMIA 177
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 37.8 bits (87), Expect = 9e-04
Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 7/132 (5%)
Query: 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKI-CWGVEKADLPAKYAEMHTVFK 102
I+ ++ ++ P D ++ GSG G + L ++ A G + E A+ + +K
Sbjct: 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKN--YK 144
Query: 103 RWMQWYGKRHGEFRLVKGDFLTEEHRE-KITQASIVFVNNFAFGPTVDHALKERFQDLKD 161
W + H E DF+ ++ S+ F L + LK
Sbjct: 145 HWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKH 204
Query: 162 GARIVSSKSFCP 173
G +
Sbjct: 205 GGVCA---VYVV 213
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 37.6 bits (86), Expect = 9e-04
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 18/140 (12%)
Query: 27 VYQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVE 86
++ PF+ + + + + P +DLGSG G+++ A G G++
Sbjct: 13 IHNPFTE--------EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITG-TGID 63
Query: 87 KADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGP 146
+ L A+ + H + + V
Sbjct: 64 MSSLFTAQAKRRAEELGVSERVHFIHNDA---------AGYVANEKCDVAACVGATWIAG 114
Query: 147 TVDHALKERFQDLKDGARIV 166
A + Q LK G ++
Sbjct: 115 GFAGAEELLAQSLKPGGIML 134
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 34.9 bits (79), Expect = 0.005
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 11/123 (8%)
Query: 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKR 103
+ MI + +D+G+G G L + + C GV+ + A K
Sbjct: 5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKG 62
Query: 104 WMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGA 163
++ + I V A++E + LK
Sbjct: 63 VENVRFQQGTAES---------LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDG 113
Query: 164 RIV 166
R +
Sbjct: 114 RFL 116
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 34.4 bits (78), Expect = 0.006
Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 13/137 (9%)
Query: 32 SPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLP 91
+P V G T+ ++ ++ +DV VD+G G G V L++A
Sbjct: 10 NPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRN----- 64
Query: 92 AKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHA 151
E + + +Q +G L++GD E + V + +
Sbjct: 65 ---PEAISTTEMNLQRHGLGDN-VTLMEGD-APEALCKIPDIDIAVVGGSGGELQEILRI 119
Query: 152 LKERFQDLKDGARIVSS 168
+K++ LK G RI+ +
Sbjct: 120 IKDK---LKPGGRIIVT 133
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 34.3 bits (78), Expect = 0.008
Identities = 19/130 (14%), Positives = 35/130 (26%), Gaps = 10/130 (7%)
Query: 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKR 103
I + + + D + LG+ G VA I + + E R
Sbjct: 63 IIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAI----------EYAPRIMR 112
Query: 104 WMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGA 163
+ + GD + I + V + A + +K LK G
Sbjct: 113 ELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGG 172
Query: 164 RIVSSKSFCP 173
+ +
Sbjct: 173 YGMIAIKARS 182
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 246
Score = 33.9 bits (76), Expect = 0.014
Identities = 20/150 (13%), Positives = 38/150 (25%), Gaps = 20/150 (13%)
Query: 26 NVYQPFSP----FVYGETSFDLISRMIDQI---NATPDDVFVDLGSGVGQVVLQVAAATG 78
N Y F+ + + + S I + N D ++DL G G + +
Sbjct: 1 NCYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK 60
Query: 79 CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVF 138
+ + + + + RL D K +
Sbjct: 61 NTWAVDL-----------SQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCL 109
Query: 139 --VNNFAFGPTVDHALKERFQDLKDGARIV 166
N + K LK+G +
Sbjct: 110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 33.5 bits (75), Expect = 0.018
Identities = 14/123 (11%), Positives = 36/123 (29%), Gaps = 11/123 (8%)
Query: 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKR 103
+++++ ++ +D+ +G G V A K+ + + K A
Sbjct: 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKV-VAFDLTEDILKVARAFIEGNG 61
Query: 104 WMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGA 163
Q + + + P + E ++ LK G
Sbjct: 62 HQQVEYVQGDAEQ---------MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGG 112
Query: 164 RIV 166
+++
Sbjct: 113 QLL 115
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 328
Score = 33.3 bits (75), Expect = 0.027
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 9/130 (6%)
Query: 47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQ 106
+I + D + +D+G G G + + AA G K GV+ + + + K ++
Sbjct: 30 IIQNKDLFKDKIVLDVGCGTGILSM-FAAKHGAKHVIGVD-------MSSIIEMAKELVE 81
Query: 107 WYGKRHGEFRLV-KGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARI 165
G L K + + + S + +D L R L +G I
Sbjct: 82 LNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLI 141
Query: 166 VSSKSFCPLN 175
K L
Sbjct: 142 FPDKCSIHLA 151
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 316
Score = 32.8 bits (74), Expect = 0.035
Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 7/123 (5%)
Query: 47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQ 106
M + D V +D+GSG G + + AA G + G+E + + +
Sbjct: 25 MFHNRHLFKDKVVLDVGSGTGILCM-FAAKAGARKVIGIECSSISDYA-VKIVKANKLDH 82
Query: 107 WYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIV 166
G+ + + S + ++ L R + L I
Sbjct: 83 VVTIIKGKVE-----EVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137
Query: 167 SSK 169
+
Sbjct: 138 PDR 140
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 32.2 bits (72), Expect = 0.051
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 11/126 (8%)
Query: 42 DLISRMIDQINATPDDVFV-DLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTV 100
D +S +++ + V + D G G G + L + D
Sbjct: 13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPL--LPEGSKYTGIDSGETLLAEARE 70
Query: 101 FKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLK 160
R + + + E + T + L++ +K
Sbjct: 71 LFRLLPYDSEFLEGDA--------TEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVK 122
Query: 161 DGARIV 166
G +I+
Sbjct: 123 KGGKII 128
>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis,
Ermc' [TaxId: 1423]}
Length = 235
Score = 31.4 bits (70), Expect = 0.083
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFK 102
I +++ I D ++GSG G L++ ++ T
Sbjct: 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKL-------CKTTEN 61
Query: 103 RWMQWYGKRHGEFRLVKGDFL 123
+ + + +++ F
Sbjct: 62 KLVDHDNFQVLNKDILQFKFP 82
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 31.4 bits (70), Expect = 0.092
Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 7/128 (5%)
Query: 47 MIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQ 106
+ + D V +D+G G G + + AA G K GV++++ A +
Sbjct: 27 IYQNPHIFKDKVVLDVGCGTGILSMF-AAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLED 84
Query: 107 WYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGARIV 166
G+ + + + + + D L + + L G +
Sbjct: 85 TITLIKGKIE----EVHLPVEKVDVIISEWMGYFLLFESML-DSVLYAKNKYLAKGGSVY 139
Query: 167 SSKSFCPL 174
L
Sbjct: 140 PDICTISL 147
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 31.2 bits (70), Expect = 0.11
Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 18/131 (13%)
Query: 44 ISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKIC-WGVEKADLPAKYAEMHTVFK 102
S +I + P +++G G G + + A K VE+ + K A
Sbjct: 74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAM-----D 128
Query: 103 RWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDG 162
++Y + + ++ A P + +++ +K G
Sbjct: 129 NLSEFYDIGNVRTSRSDIADFISDQ---------MYDAVIADIPDPWNHVQKIASMMKPG 179
Query: 163 ARIVSSKSFCP 173
+ + P
Sbjct: 180 SVAT---FYLP 187
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 30.8 bits (68), Expect = 0.12
Identities = 11/80 (13%), Positives = 21/80 (26%)
Query: 38 ETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEM 97
ET +++ M+ A ++ G + A G + + D A
Sbjct: 2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP 61
Query: 98 HTVFKRWMQWYGKRHGEFRL 117
+ F L
Sbjct: 62 WAEGILADFLLWEPGEAFDL 81
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 30.1 bits (67), Expect = 0.19
Identities = 21/155 (13%), Positives = 41/155 (26%), Gaps = 24/155 (15%)
Query: 32 SPFVYGETSFDLISR-------------MIDQINATPDDVFVDLGSGVGQVVLQVAAATG 78
YGE FD ++ D+ + LG+ G V +A
Sbjct: 20 YGSHYGEKVFDGYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD 79
Query: 79 CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVF 138
I + VE A+ + + + D I + +
Sbjct: 80 EGIIYAVE------YSAKPFEKLLELV----RERNNIIPLLFDASKPWKYSGIVEKVDLI 129
Query: 139 VNNFAFGPTVDHALKERFQDLKDGAR-IVSSKSFC 172
+ A ++ LK+ ++ K+
Sbjct: 130 YQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARS 164
>d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 158
Score = 29.8 bits (66), Expect = 0.22
Identities = 14/127 (11%), Positives = 35/127 (27%), Gaps = 17/127 (13%)
Query: 41 FDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTV 100
++ + +NA + + A G ++ K+
Sbjct: 39 AEISPEQVAYVNAHGTSTPAN----EKGESGAIVAVLGKEVPVSSTKSFTGHLLG-AAGA 93
Query: 101 FKRWMQWYGKRHGEFRL----------VKGDFLTEEHREKITQASIVFVNNFAFGPTVDH 150
+ + RH + ++ + + + EK + N F FG
Sbjct: 94 VEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVYGQGLEK--EIPYAISNTFGFGGHNAV 151
Query: 151 ALKERFQ 157
+R++
Sbjct: 152 LAFKRWE 158
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 251
Score = 29.3 bits (64), Expect = 0.43
Identities = 13/129 (10%), Positives = 32/129 (24%), Gaps = 10/129 (7%)
Query: 38 ETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEM 97
+ D + + + +DL G G + A G++ + + A
Sbjct: 24 KAEIDFVEEIFKEDAKREVRRVLDLACGTGI--PTLELAERGYEVVGLDLHEEMLRVARR 81
Query: 98 HTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQ 157
+ + + K +F + + + +
Sbjct: 82 KAKERNLKIEFLQGDVLEIAFKNEF--------DAVTMFFSTIMYFDEEDLRKLFSKVAE 133
Query: 158 DLKDGARIV 166
LK G +
Sbjct: 134 ALKPGGVFI 142
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 29.1 bits (64), Expect = 0.47
Identities = 10/64 (15%), Positives = 19/64 (29%)
Query: 49 DQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWY 108
+ + + V++GSG G V +A G++ YA +
Sbjct: 25 RDLFGNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIK 84
Query: 109 GKRH 112
Sbjct: 85 LLWV 88
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB
{Salmonella typhimurium [TaxId: 90371]}
Length = 198
Score = 28.4 bits (62), Expect = 0.68
Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 10/122 (8%)
Query: 45 SRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRW 104
S ++ +DLG G G+ L +AA W +R
Sbjct: 20 SDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNP--------ASMANLERI 71
Query: 105 MQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHALKERFQDLKDGAR 164
G + + LV + LT + +++V F T+ + + K G
Sbjct: 72 KAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVM--MFLEAQTIPGLIANMQRCTKPGGY 129
Query: 165 IV 166
+
Sbjct: 130 NL 131
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 28.4 bits (62), Expect = 0.88
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 36 YGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYA 95
Y +++++ ++++ V +D+G G G A A +G++ + + K A
Sbjct: 66 YQPLRDAIVAQLRERLDDKATAV-LDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA 124
Query: 96 EMHTVFKRWMQWYGKRH 112
+ R
Sbjct: 125 AKRYPQVTFCVASSHRL 141
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 280
Score = 28.4 bits (62), Expect = 0.91
Identities = 18/154 (11%), Positives = 46/154 (29%), Gaps = 15/154 (9%)
Query: 28 YQPFSPFVYGETSFDLISRMIDQI---------NATPDDVFVDLGSGVGQVVLQVAAATG 78
+ F F+ T + +D+ + + + +G G G++ LQ+ +
Sbjct: 4 VESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQ 63
Query: 79 CKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQAS--- 135
+ ++ AE +K + + +E + +
Sbjct: 64 AQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQK 123
Query: 136 ---IVFVNNFAFGPTVDHALKERFQDLKDGARIV 166
I + + + LK L A+++
Sbjct: 124 WDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKML 157
>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein
KsgA {Escherichia coli [TaxId: 562]}
Length = 252
Score = 28.0 bits (61), Expect = 1.1
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFK 102
+I ++ IN V++G G+ L +E A + H
Sbjct: 9 VIDSIVSAINPQKGQAMVEIGPGLA--ALTEPVGERLDQLTVIELDRDLAARLQTHPFLG 66
Query: 103 RWMQWY 108
+ Y
Sbjct: 67 PKLTIY 72
>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538
{Streptococcus pyogenes [TaxId: 1314]}
Length = 152
Score = 27.5 bits (60), Expect = 1.1
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 38 ETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEM 97
F++I + +DL +G G + ++ + G VEK +
Sbjct: 3 GAIFNMIGPYFN------GGRVLDLFAGSGGLAIEA-VSRGMSAAVLVEKNRKAQAIIQD 55
Query: 98 HTVFKRWMQWYGKRH 112
+ + + +
Sbjct: 56 NIIMTKAENRFTLLK 70
>d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 194
Score = 27.6 bits (60), Expect = 1.5
Identities = 10/65 (15%), Positives = 13/65 (20%), Gaps = 4/65 (6%)
Query: 94 YAEMHTVFKRWMQWYGKRHGE--FRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVDHA 151
+ R R D + E R T V A
Sbjct: 132 DVVTALMSLREGVIAPTAGVTSVPREYGIDLVLGEPRS--TAPRTALVLARGRWGFNSAA 189
Query: 152 LKERF 156
+ RF
Sbjct: 190 VLRRF 194
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389
{Thermotoga maritima [TaxId: 2336]}
Length = 246
Score = 27.4 bits (59), Expect = 1.9
Identities = 18/141 (12%), Positives = 37/141 (26%), Gaps = 17/141 (12%)
Query: 28 YQPFSPFVYGETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEK 87
Y + LI +++ P V +DLG G G+ L + + K
Sbjct: 16 YDSMYETPKWKLYHRLIGSFLEEYLKNPCRV-LDLGGGTGKWSLFLQERGFEVVLVDPSK 74
Query: 88 ADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPT 147
L + +A + + ++
Sbjct: 75 EMLEVAREKGVKNVVEAKAEDLPFPSGAF----------------EAVLALGDVLSYVEN 118
Query: 148 VDHALKERFQDLKDGARIVSS 168
D A E + L ++++
Sbjct: 119 KDKAFSEIRRVLVPDGLLIAT 139
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 26.9 bits (59), Expect = 2.0
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 18/71 (25%)
Query: 138 FVNNFAFGPTVDHALKERFQDLKD------------------GARIVSSKSFCPLNFRIT 179
FV N +FG V ++++ + + D GA I++ + +
Sbjct: 40 FVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTESTRHIHGA 99
Query: 180 DRNLTDGGKKV 190
+ + G K
Sbjct: 100 LQKIKAAGMKA 110
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 27.2 bits (59), Expect = 2.1
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 6/108 (5%)
Query: 42 DLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVF 101
+ I + ++ D +DLG G G +L+ A + D+ ++
Sbjct: 11 NFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYG----VDIAEVS--INDAR 64
Query: 102 KRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNFAFGPTVD 149
R + FR + ++ S F ++AF +
Sbjct: 65 VRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSES 112
>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM
{Methylobacillus flagellatus [TaxId: 405]}
Length = 395
Score = 27.3 bits (60), Expect = 2.3
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 49 DQINATPDDVFVDLGSGVGQVVLQVAAATGCKI 81
+ + + VD G+ +G+ + + T K
Sbjct: 206 GLLRFSDSEKMVDCGASIGESLAGLIGVTKGKF 238
Score = 25.3 bits (55), Expect = 9.8
Identities = 6/65 (9%), Positives = 11/65 (16%), Gaps = 5/65 (7%)
Query: 46 RMIDQINATPDDVFVDLGSGVGQVVLQVAAA-----TGCKICWGVEKADLPAKYAEMHTV 100
R + D V ++ G V L
Sbjct: 89 RFTELATHDRDLVALNTCRYDGPKRFFDQICRTHGIPHLNFEQAVRAFGLQGNVDYRVDD 148
Query: 101 FKRWM 105
+ +
Sbjct: 149 WGADI 153
>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 278
Score = 26.8 bits (58), Expect = 3.2
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPAKYAEMHTVFK 102
+I+ +ID+ P DV +++G G G + V K E P AE+H +
Sbjct: 9 IINSIIDKAALRPTDVVLEVGPGTG--NMTVKLLEKAKKVVACELD--PRLVAELHKRVQ 64
Query: 103 RWMQWYGKRHGEFRLVKGDF 122
+ ++K D
Sbjct: 65 GTPVASKLQVLVGDVLKTDL 84
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase,
phosphotransferase subunit DhaM {Lactococcus lactis
[TaxId: 1358]}
Length = 123
Score = 25.8 bits (57), Expect = 3.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 38 ETSFDLISRMIDQINATPDDVFVDLGSGV 66
TSFD + I++ A F DLGS
Sbjct: 43 GTSFDRVMNAIEENEADNLLTFFDLGSAR 71
>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus
pneumoniae, Ermam [TaxId: 1313]}
Length = 245
Score = 26.4 bits (57), Expect = 3.3
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 43 LISRMIDQINATPDDVFVDLGSGVG 67
+++++I Q+N D ++G+G G
Sbjct: 17 VLNQIIKQLNLKETDTVYEIGTGKG 41
>d2o4da1 a.152.1.3 (A:2-145) Hypothetical protein PA0269
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 144
Score = 25.9 bits (56), Expect = 3.7
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 5/91 (5%)
Query: 69 VVLQVAAATGCKICWGVEKADLPAKYAEMHTVFKRWMQWYGKRHGEFRLVKGDFLTEEHR 128
V L+ + GC C ++ A A ++ +Q +
Sbjct: 37 VYLRTSQINGCAYCV-----NMHANDARKAGETEQRLQALCVWQETPYFTPRERAALAWT 91
Query: 129 EKITQASIVFVNNFAFGPTVDHALKERFQDL 159
E++ + S + + +H + +L
Sbjct: 92 EQLARLSQGALPHGLLDELREHFDDKEIAEL 122
>d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II
{Synechocystis sp. [TaxId: 1143]}
Length = 161
Score = 25.9 bits (56), Expect = 4.2
Identities = 15/137 (10%), Positives = 30/137 (21%), Gaps = 16/137 (11%)
Query: 37 GETSFDLISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLP----- 91
G + I+ + P+ V G V K G ++
Sbjct: 25 GRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHAYNIAVSSTK 84
Query: 92 AKYAEMHTVFKRWMQWYGKRHGEFRLVKG-----------DFLTEEHREKITQASIVFVN 140
+ + V D + + + N
Sbjct: 85 SMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVPGQSRALIVDVALSN 144
Query: 141 NFAFGPTVDHALKERFQ 157
+F FG +++Q
Sbjct: 145 SFGFGGHNVTLAFKKYQ 161
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
aries) [TaxId: 9940]}
Length = 511
Score = 25.7 bits (56), Expect = 7.4
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 139 VNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNF 176
N FG ++ G I S + + F
Sbjct: 440 HPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTF 477
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas
syringae [TaxId: 317]}
Length = 201
Score = 25.4 bits (54), Expect = 7.4
Identities = 11/128 (8%), Positives = 31/128 (24%), Gaps = 4/128 (3%)
Query: 43 LISRMIDQINATPDDVFVDLGSGVGQVVLQVAAATGCKICWGVEKADLPA--KYAEMHTV 100
+ + +N P + G Q + ++ + + +A +
Sbjct: 8 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPH 67
Query: 101 FKRWMQWYGKRHGEFRLVKGDFLTEEHREKITQASIVFVNNF-AFGPTVDHALKERFQD- 158
+ + GDF R+ A+ A + + +
Sbjct: 68 ITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEAL 127
Query: 159 LKDGARIV 166
+ +
Sbjct: 128 MPQACSGL 135
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 511
Score = 25.7 bits (56), Expect = 7.8
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 139 VNNFAFGPTVDHALKERFQDLKDGARIVSSKSFCPLNF 176
+ FG T+ G I S + + P F
Sbjct: 441 RPDAIFGETMVELGAPFSLKGLMGNPICSPQYWKPSTF 478
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.402
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,014,577
Number of extensions: 47458
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 42
Length of query: 268
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,254,276
Effective search space: 230786784
Effective search space used: 230786784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)