BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17228
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H3H1|MOD5_HUMAN tRNA dimethylallyltransferase, mitochondrial OS=Homo sapiens
GN=TRIT1 PE=1 SV=1
Length = 467
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 25 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNK 57
I+DI R+K+PI+VGGTNYYIESLLW +L++ K
Sbjct: 106 IEDIFARDKIPIVVGGTNYYIESLLWKVLVNTK 138
>sp|Q80UN9|MOD5_MOUSE tRNA dimethylallyltransferase, mitochondrial OS=Mus musculus
GN=Trit1 PE=2 SV=2
Length = 467
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/33 (66%), Positives = 28/33 (84%)
Query: 25 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNK 57
I+DI R+K+PI+VGGTNYYIESLLW +L+ K
Sbjct: 106 IEDIFARDKIPIVVGGTNYYIESLLWKVLITTK 138
>sp|Q8XL85|MIAA_CLOPE tRNA dimethylallyltransferase OS=Clostridium perfringens (strain 13
/ Type A) GN=miaA PE=3 SV=1
Length = 310
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 20 LTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEH 79
LT KI DI R K+PI+VGGT YI S++ + +D+ E +++KI N EH
Sbjct: 80 LTTEKIKDIQSRGKLPILVGGTGLYINSIICNMNFAE----SDKDEEYREELEKIAN-EH 134
Query: 80 GRDVLESLWK 89
G + L + K
Sbjct: 135 GNEYLHEMLK 144
>sp|B2G870|MIAA_LACRJ tRNA dimethylallyltransferase OS=Lactobacillus reuteri (strain JCM
1112) GN=miaA PE=3 SV=1
Length = 307
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNL- 77
KL KID+I QRN +PII GGT +Y+++ L DN +DQ F +D IRN
Sbjct: 78 KLADQKIDEIAQRNHLPIIAGGTGFYLQT-----LTDNLALGSDQ--FDQQTLD-IRNHW 129
Query: 78 -----EHGRD-VLESLWKLDMNYSYRI 98
E G + V E L KLD S RI
Sbjct: 130 KEVAEEKGAEYVWEQLNKLDPVASARI 156
>sp|A5VKT6|MIAA_LACRD tRNA dimethylallyltransferase OS=Lactobacillus reuteri (strain DSM
20016) GN=miaA PE=3 SV=1
Length = 307
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNL- 77
KL KID+I QRN +PII GGT +Y+++ L DN +DQ F +D IRN
Sbjct: 78 KLADQKIDEIAQRNHLPIIAGGTGFYLQT-----LTDNLALGSDQ--FDQQTLD-IRNHW 129
Query: 78 -----EHGRD-VLESLWKLDMNYSYRI 98
E G + V E L KLD S RI
Sbjct: 130 KEVAEEKGAEYVWEQLNKLDPVASARI 156
>sp|Q0STR2|MIAA_CLOPS tRNA dimethylallyltransferase OS=Clostridium perfringens (strain
SM101 / Type A) GN=miaA PE=3 SV=1
Length = 310
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLE 78
+L KI DI R K+PI+VGGT YI S++ + +D+ E +++KI N E
Sbjct: 79 ELATEKIKDIQSRGKLPILVGGTGLYINSIICNMNFAE----SDKDEEYREELEKIAN-E 133
Query: 79 HGRDVLESLWK 89
HG + L + K
Sbjct: 134 HGNEYLHEMLK 144
>sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2
PE=1 SV=2
Length = 466
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 25 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQ---GEFTLYDMDKIRNLEHGR 81
I++I+ RN +P++VGGT+YYI++++ LLD+ ++ ++ D D + GR
Sbjct: 102 IEEIVSRNHIPVLVGGTHYYIQAVVSKFLLDDAAEDTEECCADVASVVDQDMVVESVFGR 161
Query: 82 DVLESLWKL 90
D L ++L
Sbjct: 162 DDLSHGYEL 170
>sp|Q0TRD4|MIAA_CLOP1 tRNA dimethylallyltransferase OS=Clostridium perfringens (strain
ATCC 13124 / NCTC 8237 / Type A) GN=miaA PE=3 SV=1
Length = 310
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 20 LTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEH 79
L KI DI R K+PI+VGGT YI S++ + +D+ E +++KI N EH
Sbjct: 80 LATEKIKDIQSRGKLPILVGGTGLYINSIICNMNFAE----SDKDEEYREELEKIAN-EH 134
Query: 80 GRDVLESLWK 89
G + L + K
Sbjct: 135 GNEYLHEMLK 144
>sp|A0Q0M8|MIAA_CLONN tRNA dimethylallyltransferase OS=Clostridium novyi (strain NT)
GN=miaA PE=3 SV=1
Length = 314
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 21 TKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNL--E 78
+K I DI R K+P+IVGGT +YI+SL++ N + E ++NL E
Sbjct: 81 SKNAIKDIASRGKLPMIVGGTGFYIDSLIFNYDFANTYKDEEYRE-------HLKNLASE 133
Query: 79 HGRDVLESLWK 89
HG++ + L K
Sbjct: 134 HGKEYVHELLK 144
>sp|O67162|MIAA_AQUAE tRNA dimethylallyltransferase OS=Aquifex aeolicus (strain VF5)
GN=miaA PE=3 SV=1
Length = 305
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLE 78
++ K KI++I ++ KVPI+VGGT YI++LL+ I K + N + + LY++ + +
Sbjct: 76 EMAKEKIEEIKRKGKVPIVVGGTYLYIQALLYGIDETPKPDWNLRNK--LYEIAR----K 129
Query: 79 HGRDVL-ESLWKLDMNYSYRI 98
G D L E L +D Y+ +I
Sbjct: 130 KGNDYLYEKLKAIDPKYAKKI 150
>sp|Q4L610|MIAA_STAHJ tRNA dimethylallyltransferase OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=miaA PE=3 SV=1
Length = 332
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 25 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT---NINDQGEFTLYDMDKIRNLE 78
I+DI R K+PII GGT YI+SL++ D++T + + + L ++ + N E
Sbjct: 89 IEDITSRGKIPIIAGGTGLYIQSLIYDYPFDDETVSKEVEQKTQLQLQKLEPLTNQE 145
>sp|C4L1B9|MIAA_EXISA tRNA dimethylallyltransferase OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=miaA PE=3 SV=1
Length = 311
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLW 50
+L + IDDI R K+PIIVGGT YI S+L+
Sbjct: 80 QLARAAIDDIYARGKLPIIVGGTGLYIRSILY 111
>sp|Q2YXR3|MIAA_STAAB tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=miaA PE=3 SV=2
Length = 311
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLE 78
+L + I DI R KVPII GGT YI+SL++ L+++T + Q K+ LE
Sbjct: 82 RLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTSAQLSVV---KQKLSALE 138
Query: 79 H 79
H
Sbjct: 139 H 139
>sp|Q820U0|MIAA_ENTFA tRNA dimethylallyltransferase OS=Enterococcus faecalis (strain ATCC
700802 / V583) GN=miaA PE=3 SV=1
Length = 309
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGE 65
K + KI +I ++ K+PIIVGGT YI+SLL+ L ++ I+D E
Sbjct: 78 KEGRQKIKEITEKGKLPIIVGGTGLYIQSLLYDFQLGSR-EIDDSPE 123
>sp|Q6GHD2|MIAA_STAAR tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
MRSA252) GN=miaA PE=3 SV=1
Length = 311
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 58
+L + I DI R KVPII GGT YI+SL++ L+++T
Sbjct: 82 RLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDET 121
>sp|Q6G9R0|MIAA_STAAS tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
MSSA476) GN=miaA PE=3 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 58
+L + I DI R KVPII GGT YI+SL++ L+++T
Sbjct: 82 RLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDET 121
>sp|Q8CQL3|MIAA_STAES tRNA dimethylallyltransferase OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=miaA PE=1 SV=1
Length = 332
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 25 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQ 63
I DI +R KVPII GGT YI+SLL+ ++++ D+
Sbjct: 89 IKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDK 127
>sp|Q5HPN8|MIAA_STAEQ tRNA dimethylallyltransferase OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=miaA PE=3 SV=1
Length = 332
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 25 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQ 63
I DI +R KVPII GGT YI+SLL+ ++++ D+
Sbjct: 89 IKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDK 127
>sp|C0MDJ6|MIAA_STRS7 tRNA dimethylallyltransferase OS=Streptococcus equi subsp.
zooepidemicus (strain H70) GN=miaA PE=3 SV=1
Length = 296
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 21 TKTKIDDILQRNKVPIIVGGTNYYIESLL 49
K I+DI+ R K+PIIVGGT Y++SLL
Sbjct: 82 AKRAIEDIVSRGKLPIIVGGTGLYLQSLL 110
>sp|B4U3M4|MIAA_STREM tRNA dimethylallyltransferase OS=Streptococcus equi subsp.
zooepidemicus (strain MGCS10565) GN=miaA PE=3 SV=1
Length = 296
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 21 TKTKIDDILQRNKVPIIVGGTNYYIESLL 49
K I+DI+ R K+PIIVGGT Y++SLL
Sbjct: 82 AKRAIEDIVSRGKLPIIVGGTGLYLQSLL 110
>sp|P65356|MIAA_STAAW tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain MW2)
GN=miaA PE=3 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 58
+L + I DI R KVPII GGT YI+SL++ L+++T
Sbjct: 82 RLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDET 121
>sp|A8Z1X3|MIAA_STAAT tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
USA300 / TCH1516) GN=miaA PE=3 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 58
+L + I DI R KVPII GGT YI+SL++ L+++T
Sbjct: 82 RLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDET 121
>sp|P65355|MIAA_STAAN tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
N315) GN=miaA PE=3 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 58
+L + I DI R KVPII GGT YI+SL++ L+++T
Sbjct: 82 RLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDET 121
>sp|P65354|MIAA_STAAM tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=miaA PE=1 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 58
+L + I DI R KVPII GGT YI+SL++ L+++T
Sbjct: 82 RLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDET 121
>sp|A6QGK1|MIAA_STAAE tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
Newman) GN=miaA PE=3 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 58
+L + I DI R KVPII GGT YI+SL++ L+++T
Sbjct: 82 RLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDET 121
>sp|Q5HGC9|MIAA_STAAC tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain COL)
GN=miaA PE=3 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 58
+L + I DI R KVPII GGT YI+SL++ L+++T
Sbjct: 82 RLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDET 121
>sp|A5ISI5|MIAA_STAA9 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain JH9)
GN=miaA PE=3 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 58
+L + I DI R KVPII GGT YI+SL++ L+++T
Sbjct: 82 RLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDET 121
>sp|Q2FYZ2|MIAA_STAA8 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain NCTC
8325) GN=miaA PE=3 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 58
+L + I DI R KVPII GGT YI+SL++ L+++T
Sbjct: 82 RLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDET 121
>sp|Q2FHD6|MIAA_STAA3 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
USA300) GN=miaA PE=3 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 58
+L + I DI R KVPII GGT YI+SL++ L+++T
Sbjct: 82 RLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDET 121
>sp|A6U1C1|MIAA_STAA2 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain JH1)
GN=miaA PE=3 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 58
+L + I DI R KVPII GGT YI+SL++ L+++T
Sbjct: 82 RLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDET 121
>sp|A7X1U8|MIAA_STAA1 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain Mu3
/ ATCC 700698) GN=miaA PE=3 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 58
+L + I DI R KVPII GGT YI+SL++ L+++T
Sbjct: 82 RLAEDLITDITNRGKVPIIAGGTGLYIQSLIYNYELEDET 121
>sp|C0MAN2|MIAA_STRE4 tRNA dimethylallyltransferase OS=Streptococcus equi subsp. equi
(strain 4047) GN=miaA PE=3 SV=1
Length = 296
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 21 TKTKIDDILQRNKVPIIVGGTNYYIESLL 49
K I+DI+ R K+PIIVGGT Y++SLL
Sbjct: 82 AKRAIEDIVSRGKLPIIVGGTGLYLQSLL 110
>sp|Q3A503|MIAA1_PELCD tRNA dimethylallyltransferase 1 OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=miaA1 PE=3 SV=1
Length = 314
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLL 49
+L + ++DIL RN++PI+VGGT YI++LL
Sbjct: 86 RLGRQALNDILGRNRLPIVVGGTGLYIQALL 116
>sp|Q8E4V8|MIAA_STRA3 tRNA dimethylallyltransferase OS=Streptococcus agalactiae serotype
III (strain NEM316) GN=miaA PE=3 SV=1
Length = 296
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 18 IKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTN 59
+K K ID I+ + K+PIIVGGT Y++SL L + N
Sbjct: 79 VKEAKVAIDTIISKGKIPIIVGGTGLYLQSLFEGYHLGGEVN 120
>sp|Q8CX09|MIAA_STRA5 tRNA dimethylallyltransferase OS=Streptococcus agalactiae serotype
V (strain ATCC BAA-611 / 2603 V/R) GN=miaA PE=3 SV=1
Length = 296
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 18 IKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTN 59
+K K ID I+ + K+PIIVGGT Y++SL L + N
Sbjct: 79 VKEAKVAIDTIISKGKIPIIVGGTGLYLQSLFEGYHLGGEVN 120
>sp|Q3K0P1|MIAA_STRA1 tRNA dimethylallyltransferase OS=Streptococcus agalactiae serotype
Ia (strain ATCC 27591 / A909 / CDC SS700) GN=miaA PE=3
SV=1
Length = 296
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 18 IKLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTN 59
+K K ID I+ + K+PIIVGGT Y++SL L + N
Sbjct: 79 VKEAKVAIDTIISKGKIPIIVGGTGLYLQSLFEGYHLGGEVN 120
>sp|B9DUP8|MIAA_STRU0 tRNA dimethylallyltransferase OS=Streptococcus uberis (strain ATCC
BAA-854 / 0140J) GN=miaA PE=3 SV=1
Length = 301
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 25 IDDILQRNKVPIIVGGTNYYIESLL 49
I DIL R K+PIIVGGT YI+SLL
Sbjct: 87 IKDILSRGKIPIIVGGTGLYIQSLL 111
>sp|Q49X96|MIAA_STAS1 tRNA dimethylallyltransferase OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=miaA PE=3 SV=1
Length = 315
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 25 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT---NINDQGEFTLYDMDKIRNLE 78
I +I R +VPIIVGGT YI+SL++ +++T ++ E L ++D++ N E
Sbjct: 88 IKEITHRGRVPIIVGGTGLYIQSLIYDYAFEDETISEAHSESVETQLAELDQLSNDE 144
>sp|Q97I21|MIAA_CLOAB tRNA dimethylallyltransferase OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=miaA PE=3 SV=1
Length = 309
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLW 50
K+ + IDDI R K PIIVGGT YI SL+
Sbjct: 78 KMAQNAIDDITSRKKYPIIVGGTGLYINSLIC 109
>sp|O31795|MIAA_BACSU tRNA dimethylallyltransferase OS=Bacillus subtilis (strain 168)
GN=miaA PE=3 SV=2
Length = 314
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 20 LTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTN 59
L + KI +I R K+P+IVGGT YI+S+L+ + N
Sbjct: 83 LVRNKISEIANRGKLPMIVGGTGLYIQSVLYDYTFTEEAN 122
>sp|A9VR03|MIAA_BACWK tRNA dimethylallyltransferase OS=Bacillus weihenstephanensis
(strain KBAB4) GN=miaA PE=3 SV=1
Length = 317
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 25 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEHGRD-V 83
I +I +R K+PIIVGGT YI+S+L+ ++ G+ T + + LEHG + V
Sbjct: 89 IREITERGKLPIIVGGTGLYIQSVLFDYQF-----TDEAGDATYREQMEKLALEHGVEYV 143
Query: 84 LESLWKLDMNYSYRI 98
+ L ++D + RI
Sbjct: 144 HKKLQEVDPESAERI 158
>sp|B1MXL9|MIAA_LEUCK tRNA dimethylallyltransferase OS=Leuconostoc citreum (strain KM20)
GN=miaA PE=3 SV=1
Length = 294
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 25 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTL 68
I+DI +R K+P+I GGT +Y+++LL LD +D+ E L
Sbjct: 84 INDIAKRGKLPVIAGGTGFYVKALLGQQPLDFVA--SDEAEVAL 125
>sp|A7Z500|MIAA_BACA2 tRNA dimethylallyltransferase OS=Bacillus amyloliquefaciens (strain
FZB42) GN=miaA PE=3 SV=1
Length = 314
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLW 50
K+ + KI +I R K+P+IVGGT YI+S+L+
Sbjct: 82 KMVRGKITEIADRGKLPMIVGGTGLYIQSVLY 113
>sp|B1YMH0|MIAA_EXIS2 tRNA dimethylallyltransferase OS=Exiguobacterium sibiricum (strain
DSM 17290 / JCM 13490 / 255-15) GN=miaA PE=3 SV=1
Length = 312
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 20 LTKTKIDDILQRNKVPIIVGGTNYYIESLLW----TILLDNKTNINDQGEFTLYD----- 70
L +T ID+I + K+PIIVGGT YI ++L+ T+ +NK + +F +
Sbjct: 83 LARTAIDEIAAKGKLPIIVGGTGLYIRAILYDYQFTVQAENKVLREELEQFAQAEGATAL 142
Query: 71 MDKIRNLEHGR 81
D++R L+ R
Sbjct: 143 HDRLRQLDAKR 153
>sp|A8EYU8|MIAA_RICCK tRNA dimethylallyltransferase OS=Rickettsia canadensis (strain
McKiel) GN=miaA PE=3 SV=1
Length = 325
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 18 IKLTKTKIDDILQRNKVPIIVGGTNYYIESLLW 50
+KL KI +I+ R K+PI++GGT YI SL++
Sbjct: 79 LKLAAKKIKEIISRGKLPILIGGTGLYINSLVF 111
>sp|Q8CXG5|MIAA_OCEIH tRNA dimethylallyltransferase OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=miaA PE=3
SV=1
Length = 313
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 21 TKTKIDDILQRNKVPIIVGGTNYYIESLLW 50
K IDD+L R K+PI+VGG+ YI+++L+
Sbjct: 81 AKKCIDDVLGRGKLPILVGGSGLYIQAVLY 110
>sp|Q03VI2|MIAA_LEUMM tRNA dimethylallyltransferase OS=Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 / NCDO 523) GN=miaA PE=3
SV=1
Length = 297
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 10/76 (13%)
Query: 25 IDDILQRNKVPIIVGGTNYYIESLLWTILLD-NKTNINDQGEFTLYDMDKIRNLEHGRDV 83
I DI+ R K+PIIVGGT Y+++LL L+ ++ + + Y++DK+ V
Sbjct: 84 IADIISRGKLPIIVGGTGLYVKALLGFQELEYAASDTEEVHKLNAYELDKL--------V 135
Query: 84 LESLWKLDMNYSYRIE 99
+E L LD+N + +++
Sbjct: 136 VE-LKSLDINRAQKVD 150
>sp|Q24X66|MIAA_DESHY tRNA dimethylallyltransferase OS=Desulfitobacterium hafniense
(strain Y51) GN=miaA PE=3 SV=1
Length = 314
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 22/69 (31%)
Query: 20 LTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEH 79
L I DI R KVPI+VGGT YI SL+ D + EH
Sbjct: 79 LANQAIQDIQSRGKVPIVVGGTGLYIRSLI----------------------DPFQFAEH 116
Query: 80 GRDVLESLW 88
G + + S W
Sbjct: 117 GSESIRSFW 125
>sp|Q895H4|MIAA_CLOTE tRNA dimethylallyltransferase OS=Clostridium tetani (strain
Massachusetts / E88) GN=miaA PE=3 SV=1
Length = 314
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 20 LTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEH 79
+ + KI++I R+ +P++VGGT YI S+++ + ND ++ ++K+ E
Sbjct: 79 IAENKIEEIYNRDNIPMLVGGTGLYINSIIYNYSFTDANKDNDYRDY----LEKLAK-EK 133
Query: 80 GRDVLESLWKLDMNYSY 96
G++ + SL K YSY
Sbjct: 134 GKEYIHSLLKDIDEYSY 150
>sp|A5N8I7|MIAA_CLOK5 tRNA dimethylallyltransferase OS=Clostridium kluyveri (strain ATCC
8527 / DSM 555 / NCIMB 10680) GN=miaA PE=3 SV=1
Length = 309
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 20 LTKTKIDDILQRNKVPIIVGGTNYYIESLLWTI-LLDNKTNINDQGEFTLYDMDKIRNLE 78
L + I+DI RNK P++VGGT YI SL+ D K ++N + L ++ K++
Sbjct: 79 LAEKTIEDIYSRNKFPMLVGGTGLYINSLICNYDFTDAKVDVNYRN--YLENLAKVQ--- 133
Query: 79 HGRDVLESLWK 89
GR+ + SL K
Sbjct: 134 -GREYVHSLLK 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,633,387
Number of Sequences: 539616
Number of extensions: 1402201
Number of successful extensions: 4022
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3680
Number of HSP's gapped (non-prelim): 368
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)