RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17228
(99 letters)
>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase.
Length = 468
Score = 47.2 bits (112), Expect = 1e-07
Identities = 19/32 (59%), Positives = 27/32 (84%)
Query: 25 IDDILQRNKVPIIVGGTNYYIESLLWTILLDN 56
I++IL RN +P+IVGGTNYYI++L+ LLD+
Sbjct: 104 IEEILSRNGLPVIVGGTNYYIQALVSPFLLDD 135
>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase;
Reviewed.
Length = 307
Score = 45.9 bits (110), Expect = 4e-07
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLL 49
+ I DIL R K+PI+VGGT YI++LL
Sbjct: 80 RDALAAIADILARGKLPILVGGTGLYIKALL 110
>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 43.4 bits (103), Expect = 3e-06
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 24 KIDDILQRNKVPIIVGGTNYYIESLL 49
IDDIL R K+PI+VGGT Y+++LL
Sbjct: 84 AIDDILARGKLPILVGGTGLYLKALL 109
>gnl|CDD|216659 pfam01715, IPPT, IPP transferase. This is a family of IPP
transferases EC:2.5.1.8 also known as tRNA
delta(2)-isopentenylpyrophosphate transferase. These
enzymes modify both cytoplasmic and mitochondrial tRNAs
at A(37) to give isopentenyl A(37).
Length = 253
Score = 41.5 bits (98), Expect = 1e-05
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 24 KIDDILQRNKVPIIVGGTNYYIESLL 49
I +I R K+P++VGGT Y ++LL
Sbjct: 48 AIAEIRARGKIPLLVGGTGLYFKALL 73
>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase. Alternate names
include delta(2)-isopentenylpyrophosphate transferase,
IPP transferase, 2-methylthio-N6-isopentyladenosine tRNA
modification enzyme. Catalyzes the first step in the
modification of an adenosine near the anticodon to
2-methylthio-N6-isopentyladenosine. Understanding of
substrate specificity has changed [Protein synthesis,
tRNA and rRNA base modification].
Length = 287
Score = 37.0 bits (86), Expect = 5e-04
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 24 KIDDILQRNKVPIIVGGTNYYIESLL 49
I DI R K+P++VGGT Y+++LL
Sbjct: 80 AIADITARGKIPLLVGGTGLYLKALL 105
>gnl|CDD|177823 PLN02165, PLN02165, adenylate isopentenyltransferase.
Length = 334
Score = 36.3 bits (84), Expect = 0.001
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 25 IDDILQRNKVPIIVGGTNYYIESLL 49
I +I R K+PI+ GG+N +I +LL
Sbjct: 126 ISEITSRQKLPIVAGGSNSFIHALL 150
>gnl|CDD|215451 PLN02840, PLN02840, tRNA dimethylallyltransferase.
Length = 421
Score = 31.7 bits (72), Expect = 0.038
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 26 DDILQRNKVPIIVGGTNYYIESLLWTI 52
DIL R +VPI+ GGT Y L W I
Sbjct: 104 QDILNRGRVPIVAGGTGLY---LRWYI 127
>gnl|CDD|131219 TIGR02164, torA, trimethylamine-N-oxide reductase TorA. This very
narrowly defined family represents TorA, part of a
family of related molybdoenzymes that include biotin
sulfoxide reductases, dimethyl sulfoxide reductases, and
at least two different subfamilies of
trimethylamine-N-oxide reductases. A single enzyme from
the larger family may have more than one activity. TorA
typically is located in the periplasm, has a Tat
(twin-arginine translocation)-dependent signal sequence,
and is encoded in a torCAD operon.
Length = 822
Score = 28.3 bits (63), Expect = 0.61
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 34 VPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEHG 80
+P ++G T Y + W ++L+N I L+ D ++NL+ G
Sbjct: 188 LPYVLGSTEVYAQGTSWPLILENSDTI------VLWANDPVKNLQVG 228
>gnl|CDD|224980 COG2069, CdhD, CO dehydrogenase/acetyl-CoA synthase delta subunit
(corrinoid Fe-S protein) [Energy production and
conversion].
Length = 403
Score = 27.9 bits (62), Expect = 0.85
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 25 IDDILQRNKVPIIVGGT 41
++D+LQ VPII+GG+
Sbjct: 191 LEDVLQAVDVPIIIGGS 207
>gnl|CDD|223151 COG0073, ARC1, EMAP domain [General function prediction only].
Length = 123
Score = 26.9 bits (60), Expect = 1.1
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYY 44
KL K+D ++ I+ G N+Y
Sbjct: 37 KLLVLKVDLGDEKEPRQIVCGAPNFY 62
>gnl|CDD|173191 PRK14729, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase;
Provisional.
Length = 300
Score = 27.1 bits (60), Expect = 1.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 25 IDDILQRNKVPIIVGGTNYYIESL 48
I ++ Q+ K+PI VGG+ +Y + L
Sbjct: 85 IKELRQQKKIPIFVGGSAFYFKHL 108
>gnl|CDD|111162 pfam02238, COX7a, Cytochrome c oxidase subunit VIIa. Cytochrome
c oxidase, a 13 sub-unit complex, is the terminal
oxidase in the mitochondrial electron transport chain.
This family is composed of the heart and liver isoforms
of cytochrome c oxidase subunit VIIa.
Length = 56
Score = 25.5 bits (56), Expect = 2.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 26 DDILQRNKVPIIVGGTNYYIESLLW 50
DD L R +P+ +GGT Y++ L
Sbjct: 26 DDKLYRVTMPLTLGGTAYFLIGLGI 50
>gnl|CDD|212514 cd09988, Formimidoylglutamase, Formimidoylglutamase or HutE.
Formimidoylglutamase (N-formimidoyl-L-glutamate
formimidoylhydrolase; formiminoglutamase;
N-formiminoglutamate hydrolase; N-formimino-L-glutamate
formiminohydrolase; HutE; EC 3.5.3.8) is a
metalloenzyme that catalyzes hydrolysis of
N-formimidoyl-L-glutamate to L-glutamate and formamide.
This enzyme is involved in histidine degradation,
requiring Mn as a cofactor while glutathione may be
required for maximal activity. In Pseudomonas PAO1,
mutation studies show that histidine degradation
proceeds via a 'four-step' pathway if the 'five-step'
route is absent and vice versa; in the four-step
pathway, formiminoglutaminase (HutE, EC 3.5.3.8)
directly converts formiminoglutamate (FIGLU) to
L-glutamate and formamide in a single step.
Formiminoglutamase has traditionally also been referred
to as HutG; however, formiminoglutamase is structurally
and mechanistically unrelated to N-formyl-glutamate
deformylase (also called HutG). Phylogenetic analysis
has suggested that HutE was acquired by horizontal gene
transfer from a Ralstonia-like ancestor.
Length = 262
Score = 26.3 bits (59), Expect = 2.2
Identities = 5/21 (23%), Positives = 14/21 (66%)
Query: 22 KTKIDDILQRNKVPIIVGGTN 42
+ ++L++ +PI++GG +
Sbjct: 64 AEVVAELLKKGIIPIVIGGGH 84
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 26.5 bits (59), Expect = 2.4
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 32 NKVPIIVGGTNYYIESLLWTILLDNKTNINDQ 63
NKVP+++G T+ E LL+ + +
Sbjct: 302 NKVPLLIGVTSD--EGLLFLAYVLPDPTELSE 331
>gnl|CDD|232948 TIGR00381, cdhD, CO dehydrogenase/acetyl-CoA synthase, delta
subunit. This is the small subunit of a heterodimer
which catalyzes the reaction CO + H2O + Acceptor = CO2 +
Reduced acceptor and is involved in the synthesis of
acetyl-CoA from CO2 and H2 [Energy metabolism,
Chemoautotrophy].
Length = 389
Score = 26.4 bits (58), Expect = 2.9
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 25 IDDILQRNKVPIIVGGT 41
++D+LQ VPI++GG+
Sbjct: 180 LEDVLQAVDVPIVIGGS 196
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 25.7 bits (57), Expect = 4.6
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 31 RNKVPIIVGGTNYY---IESLL 49
R K II+ G NYY IE+ +
Sbjct: 449 REKDMIIINGVNYYNHEIEAAV 470
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 25.6 bits (57), Expect = 4.9
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 8/34 (23%)
Query: 24 KIDD-----ILQRNKVPIIVGGTNYY---IESLL 49
KID+ I+ R K II GG N Y +E +
Sbjct: 386 KIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEI 419
>gnl|CDD|237909 PRK15102, PRK15102, trimethylamine N-oxide reductase I catalytic
subunit; Provisional.
Length = 825
Score = 25.4 bits (56), Expect = 5.5
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 35 PIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEHG 80
P ++G T Y + W ++L+N I L+ D ++NL+ G
Sbjct: 192 PYVLGSTEVYEQGTSWPLILENSKTI------VLWGSDPVKNLQVG 231
>gnl|CDD|212539 cd11593, Agmatinase-like_2, Agmatinase and related proteins.
This family includes known and predicted bacterial and
archaeal agmatinase (agmatine ureohydrolase; AUH; SpeB;
EC=3.5.3.11), a binuclear manganese metalloenzyme that
belongs to the ureohydrolase superfamily. It is a key
enzyme in the synthesis of polyamine putrescine; it
catalyzes hydrolysis of agmatine to yield urea and
putrescine, the precursor for biosynthesis of higher
polyamines, spermidine, and spermine. As compared to E.
coli where two paths to putrescine exist, via
decarboxylation of an amino acid, ornithine or
arginine, a single path is found in Bacillus subtilis,
where polyamine synthesis starts with agmatine; the
speE and speB encode spermidine synthase and
agmatinase, respectively. The level of agmatinase
synthesis is very low, allowing strict control on the
synthesis of putrescine and therefore, of all
polyamines, consistent with polyamine levels in the
cell. This subfamily belongs to the ureohydrolase
superfamily, which includes arginase, agmatinase,
proclavaminate amidinohydrolase, and
formiminoglutamase.
Length = 263
Score = 25.1 bits (56), Expect = 6.7
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 17 TIKLTKTKIDDILQRNKVPIIVGG 40
++ + + ++L K PI++GG
Sbjct: 64 VLERIEEAVKELLDDGKFPIVLGG 87
>gnl|CDD|162444 TIGR01607, PST-A, Plasmodium subtelomeric family (PST-A). This
model represents a paralogous family of genes in
Plasmodium falciparum and Plasmodium yoelii which are
closely related to various phospholipases and
lysophospholipases of plants as well as generally being
related to the alpha/beta-fold superfamily of
hydrolases. These genes are preferentially located in
the subtelomeric regions of the chromosomes of both P.
falciparum and P. yoelii.
Length = 332
Score = 24.7 bits (54), Expect = 9.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 51 TILLDNKTNINDQGEFTLYDMDKIRNLEHG 80
T+ NK +I+++ TL DMD + +E G
Sbjct: 289 TVSFYNKLSISNKELHTLEDMDHVITIEPG 318
>gnl|CDD|202599 pfam03340, Pox_Rif, Poxvirus rifampicin resistance protein.
Length = 541
Score = 25.0 bits (55), Expect = 9.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 9 LKLTKTKWTIKLTKTKIDDILQRNK 33
LKL+ +K T+ +T I D+L +
Sbjct: 164 LKLSDSKITVTVTFNPISDVLVYDS 188
>gnl|CDD|180669 PRK06720, PRK06720, hypothetical protein; Provisional.
Length = 169
Score = 24.5 bits (53), Expect = 9.6
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 58 TNINDQGEFTLYDMDKIRNLEHGRDV-LESLWKLDM 92
TN+ + F YDM+K + + + L + ++DM
Sbjct: 61 TNLGGEALFVSYDMEKQGDWQRVISITLNAFSRIDM 96
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.419
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,043,761
Number of extensions: 412453
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 32
Length of query: 99
Length of database: 10,937,602
Length adjustment: 65
Effective length of query: 34
Effective length of database: 8,054,592
Effective search space: 273856128
Effective search space used: 273856128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)