RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17228
(99 letters)
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 54.6 bits (132), Expect = 2e-10
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLW 50
I+DI +R K+PI+VGGT+YY+++L
Sbjct: 78 TECMNAIEDIHRRGKIPIVVGGTHYYLQTLFN 109
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 52.2 bits (125), Expect = 2e-09
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRN-- 76
L + +I R K+P++VGG+N +I +LL + + ++G ++ + +
Sbjct: 117 SLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCC 176
Query: 77 ---LEHGRDVL 84
++ VL
Sbjct: 177 FLWVDVSVKVL 187
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 46.4 bits (111), Expect = 2e-07
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLL 49
K + I DI +R KVPII GGT YI+SLL
Sbjct: 83 KRAEKYIKDITRRGKVPIIAGGTGLYIQSLL 113
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 46.0 bits (110), Expect = 2e-07
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLL 49
L I +I +R ++P +VGGT Y+ +++
Sbjct: 79 DLATPLITEIHERGRLPFLVGGTGLYVNAVI 109
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 45.6 bits (109), Expect = 3e-07
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLL 49
+ ++ DI ++P++VGGT Y ++LL
Sbjct: 86 RDALAEMADITAAGRIPLLVGGTMLYFKALL 116
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 45.2 bits (108), Expect = 4e-07
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESLL 49
+ R ++P++VGGT Y ++LL
Sbjct: 81 ADALAAMAKATARGRIPLLVGGTMLYYKALL 111
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis;
HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB:
2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 42.5 bits (100), Expect = 3e-06
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 19 KLTKTKIDDILQRNKVPIIVGGTNYYIESL 48
D + + I+ GG+ + +
Sbjct: 77 HRRLIFEVDWRKSEEGLILEGGSISLLNCM 106
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 27.3 bits (61), Expect = 0.79
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 20 LTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEF--TLYDMDKIRNL 77
+ ++ V I G + + L+ + N N Q Y + +
Sbjct: 296 IPDDPVNLYANAADVDYIAGTNDM--DGHLFVGMDVPAINSNKQDVTEEDFYKLVSGLTV 353
Query: 78 EHGRDVLESLWKL 90
G ++ +++
Sbjct: 354 TKGLRGAQATYEV 366
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 0.98
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 20 LTKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNI 60
L+K +ID I+ V GT L W LL + +
Sbjct: 46 LSKEEIDHII---MSKDAVSGTLR----LFW-TLLSKQEEM 78
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 26.2 bits (58), Expect = 1.9
Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 32 NKVPIIVGGTNYYIESLLWTILLDNKTNIND 62
+P+I+G T+ E ++ + ++
Sbjct: 323 KHIPLIIGFTDA--ECEIFRRQFEQIDIVSK 351
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.70A {Thermoplasma volcanium GSS1}
Length = 313
Score = 26.0 bits (58), Expect = 2.5
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 17 TIKLTKTKIDDILQRNKVPIIVGG 40
I ++ + ++ K+PI++GG
Sbjct: 99 VIDTVESVVSAVMSDGKIPIMLGG 122
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein
structure initia structural genomics of pathogenic
protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP:
c.42.1.1
Length = 316
Score = 25.7 bits (57), Expect = 3.2
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 25 IDDILQRNKVPIIVGG 40
+ +L R P ++GG
Sbjct: 105 VFTVLARGAFPFVIGG 120
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A
{Pseudomonas aeruginosa}
Length = 319
Score = 25.4 bits (56), Expect = 3.6
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 25 IDDILQRNKVPIIVGG 40
D IL +P+ +GG
Sbjct: 112 YDRILGHGILPLTLGG 127
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 25.3 bits (56), Expect = 3.7
Identities = 6/15 (40%), Positives = 8/15 (53%), Gaps = 3/15 (20%)
Query: 36 IIVGGTNYY---IES 47
II+ G N + IE
Sbjct: 464 IIIRGRNIWPQDIEY 478
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus
radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Length = 305
Score = 25.2 bits (56), Expect = 4.4
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 25 IDDILQRNKVPIIVGG 40
+ R +VP+ +GG
Sbjct: 104 ARQVRGRCRVPVFLGG 119
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal
binding protein; HET: PLP B12 5AD; 2.01A {Clostridium
sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A*
3kox_A*
Length = 763
Score = 25.3 bits (55), Expect = 4.5
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 11 LTKTKWTIKLTKTKIDDILQ---RNKVPIIVGGT 41
++ K K + ++ R+K+ I GGT
Sbjct: 667 ISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGT 700
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM,
riken structural genomics/proteomics initiative, RSGI
RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1
PDB: 2rs7_A
Length = 113
Score = 24.7 bits (53), Expect = 4.8
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 16 WTIKLTKTKIDDILQRNKVP 35
WT++ K +++ Q+ K+
Sbjct: 23 WTLENAKARLNQYFQKEKIQ 42
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis,
nitrogen metabolism, manganese metalloenzyme; 2.15A
{Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A
3cev_A* 4cev_A 5cev_A*
Length = 299
Score = 24.9 bits (55), Expect = 6.1
Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 15 KWTIKLTKTKIDDILQRNKVPIIVGG 40
+ KL +D ++QR + P+++GG
Sbjct: 73 EANEKLAAA-VDQVVQRGRFPLVLGG 97
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex;
HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A*
3sl0_A*
Length = 413
Score = 24.4 bits (53), Expect = 7.1
Identities = 4/26 (15%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 15 KWTIKLTKTKIDDILQRNKVPIIVGG 40
++ L + + L++ + +GG
Sbjct: 169 IFSKNLFD-TMSNELRKKNFVLNIGG 193
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II),
nysgxrc structural genomics, NEW YORK SGX research
center for struc genomics; 2.30A {Clostridium
difficile}
Length = 287
Score = 24.4 bits (54), Expect = 7.6
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 25 IDDILQRNKVPIIVGG 40
I++ +KVP ++GG
Sbjct: 81 TYKIVRDSKVPFMIGG 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.419
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,513,983
Number of extensions: 73981
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 30
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)