RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17228
         (99 letters)



>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
           protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 529

 Score = 24.9 bits (54), Expect = 1.9
 Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 21  TKTKIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINDQGEFTLYDMDKIRNLEHG 80
           T  ++ D+L  +++P+++  T       +  I+ ++   I    +  L D+   +     
Sbjct: 130 TSLRLADVLWNSQIPLLICRTYGL-VGYMRIIIKEHPV-IESHPDNALEDLRLDKPFPEL 187

Query: 81  RDVLESLWKLDMN 93
           R+  +S     M 
Sbjct: 188 REHFQSYDLDHME 200


>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
          type 2 [TaxId: 11060]}
          Length = 305

 Score = 23.0 bits (48), Expect = 9.5
 Identities = 4/17 (23%), Positives = 9/17 (52%)

Query: 25 IDDILQRNKVPIIVGGT 41
           DDI ++ ++ I+    
Sbjct: 2  EDDIFRKKRLTIMDLHP 18


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 383,937
Number of extensions: 15458
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 6
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)