BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17229
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80UN9|MOD5_MOUSE tRNA dimethylallyltransferase, mitochondrial OS=Mus musculus
GN=Trit1 PE=2 SV=2
Length = 467
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I+DI R+K+PI+VGGTNYYIESLLW +L+ K E G + D E G ++
Sbjct: 106 IEDIFARDKIPIVVGGTNYYIESLLWKVLITTKP--QEMGTGKVVDRKVELEKEDGHELH 163
Query: 84 EGLWKLDKEEKDDLFKVHDTDKI 106
+ L ++D E L HD K+
Sbjct: 164 KRLSQVDPEMAAKLHP-HDKRKV 185
>sp|Q9H3H1|MOD5_HUMAN tRNA dimethylallyltransferase, mitochondrial OS=Homo sapiens
GN=TRIT1 PE=1 SV=1
Length = 467
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNK 56
I+DI R+K+PI+VGGTNYYIESLLW +L++ K
Sbjct: 106 IEDIFARDKIPIVVGGTNYYIESLLWKVLVNTK 138
>sp|A0Q0M8|MIAA_CLONN tRNA dimethylallyltransferase OS=Clostridium novyi (strain NT)
GN=miaA PE=3 SV=1
Length = 314
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNL--EHGRD 81
I DI R K+P+IVGGT +YI+SL++ N E E ++NL EHG++
Sbjct: 85 IKDIASRGKLPMIVGGTGFYIDSLIFNYDFANTYKDEEYRE-------HLKNLASEHGKE 137
Query: 82 VLEGLWK------LDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKV 126
+ L K K +DL +V ++ +L G+ NK +D+F +
Sbjct: 138 YVHELLKDIDEVSYKKLYPNDLKRVIRALEVFKLTGKTISEFNKEQDIFDI 188
>sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2
PE=1 SV=2
Length = 466
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQG---EFTLYDIDKMRNLEHGR 80
I++I+ RN +P++VGGT+YYI++++ LLD+ E+ ++ D D + GR
Sbjct: 102 IEEIVSRNHIPVLVGGTHYYIQAVVSKFLLDDAAEDTEECCADVASVVDQDMVVESVFGR 161
Query: 81 DVLEGLWKLDKE 92
D L ++L KE
Sbjct: 162 DDLSHGYELLKE 173
>sp|Q4L610|MIAA_STAHJ tRNA dimethylallyltransferase OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=miaA PE=3 SV=1
Length = 332
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I+DI R K+PII GGT YI+SL++ D++T E + T + K+ L + ++V
Sbjct: 89 IEDITSRGKIPIIAGGTGLYIQSLIYDYPFDDETVSKEVEQKTQLQLQKLEPLTN-QEVH 147
Query: 84 EGLWKLDKEEKDDL 97
+ L D + D+
Sbjct: 148 DYLATFDPQSAKDI 161
>sp|Q3A503|MIAA1_PELCD tRNA dimethylallyltransferase 1 OS=Pelobacter carbinolicus (strain
DSM 2380 / Gra Bd 1) GN=miaA1 PE=3 SV=1
Length = 314
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 14 TGGVVCRASQ--IDDILQRNKVPIIVGGTNYYIESLL 48
T G CR + ++DIL RN++PI+VGGT YI++LL
Sbjct: 80 TAGNFCRLGRQALNDILGRNRLPIVVGGTGLYIQALL 116
>sp|Q8CQL3|MIAA_STAES tRNA dimethylallyltransferase OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=miaA PE=1 SV=1
Length = 332
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILL-DNKTNINEQGEFTLYDIDKMRNLEH--GR 80
I DI +R KVPII GGT YI+SLL+ D + ++ + L K++ LEH
Sbjct: 89 IKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKL----KLKELEHLNNN 144
Query: 81 DVLEGLWKLDKEEKDDL 97
+ E L DKE D+
Sbjct: 145 KLHEYLASFDKESAKDI 161
>sp|Q5HPN8|MIAA_STAEQ tRNA dimethylallyltransferase OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=miaA PE=3 SV=1
Length = 332
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILL-DNKTNINEQGEFTLYDIDKMRNLEH--GR 80
I DI +R KVPII GGT YI+SLL+ D + ++ + L K++ LEH
Sbjct: 89 IKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKL----KLKELEHLNNN 144
Query: 81 DVLEGLWKLDKEEKDDL 97
+ E L DKE D+
Sbjct: 145 KLHEYLASFDKESAKDI 161
>sp|C4L1B9|MIAA_EXISA tRNA dimethylallyltransferase OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=miaA PE=3 SV=1
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 18 VCRASQIDDILQRNKVPIIVGGTNYYIESLLW 49
+ RA+ IDDI R K+PIIVGGT YI S+L+
Sbjct: 81 LARAA-IDDIYARGKLPIIVGGTGLYIRSILY 111
>sp|B9DUP8|MIAA_STRU0 tRNA dimethylallyltransferase OS=Streptococcus uberis (strain ATCC
BAA-854 / 0140J) GN=miaA PE=3 SV=1
Length = 301
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLL 48
I DIL R K+PIIVGGT YI+SLL
Sbjct: 87 IKDILSRGKIPIIVGGTGLYIQSLL 111
>sp|Q2YXR3|MIAA_STAAB tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=miaA PE=3 SV=2
Length = 311
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEH 78
I DI R KVPII GGT YI+SL++ L+++T + Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTSAQLSVVK---QKLSALEH 139
>sp|Q1J022|MIAA_DEIGD tRNA dimethylallyltransferase OS=Deinococcus geothermalis (strain
DSM 11300) GN=miaA PE=3 SV=1
Length = 304
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 22 SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGE 64
S I D+L R +VP++VGGT +Y+ +L+ + L + + E
Sbjct: 82 SAIADVLARGRVPLVVGGTGFYLSALVRGLPLTPPADPQMRAE 124
>sp|Q6G9R0|MIAA_STAAS tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
MSSA476) GN=miaA PE=3 SV=1
Length = 311
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 18/100 (18%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIVK---QKLSALEH----- 139
Query: 84 EGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDL 123
LD ++ D + D + EN +N++ L
Sbjct: 140 -----LDNQQLHDYLA-----QFDAVSAENIHPNNRQRGL 169
>sp|P65356|MIAA_STAAW tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain MW2)
GN=miaA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIVK---QKLSALEH----- 139
Query: 84 EGLWKLDKEEKDDLFKVHDTDKIDELEGENDKR 116
LD ++ D D + + N +R
Sbjct: 140 -----LDNQQLHDYLAQFDAVSAENIHPNNRQR 167
>sp|A8Z1X3|MIAA_STAAT tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
USA300 / TCH1516) GN=miaA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIVK---QKLSALEH----- 139
Query: 84 EGLWKLDKEEKDDLFKVHDTDKIDELEGENDKR 116
LD ++ D D + + N +R
Sbjct: 140 -----LDNQQLHDYLAQFDAVSAENIHPNNRQR 167
>sp|P65355|MIAA_STAAN tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
N315) GN=miaA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIVK---QKLSALEH----- 139
Query: 84 EGLWKLDKEEKDDLFKVHDTDKIDELEGENDKR 116
LD ++ D D + + N +R
Sbjct: 140 -----LDNQQLHDYLAQFDAVSAENIHPNNRQR 167
>sp|P65354|MIAA_STAAM tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=miaA PE=1 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIVK---QKLSALEH----- 139
Query: 84 EGLWKLDKEEKDDLFKVHDTDKIDELEGENDKR 116
LD ++ D D + + N +R
Sbjct: 140 -----LDNQQLHDYLAQFDAVSAENIHPNNRQR 167
>sp|A6QGK1|MIAA_STAAE tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
Newman) GN=miaA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIVK---QKLSALEH----- 139
Query: 84 EGLWKLDKEEKDDLFKVHDTDKIDELEGENDKR 116
LD ++ D D + + N +R
Sbjct: 140 -----LDNQQLHDYLAQFDAVSAENIHPNNRQR 167
>sp|Q5HGC9|MIAA_STAAC tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain COL)
GN=miaA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIVK---QKLSALEH----- 139
Query: 84 EGLWKLDKEEKDDLFKVHDTDKIDELEGENDKR 116
LD ++ D D + + N +R
Sbjct: 140 -----LDNQQLHDYLAQFDAVSAENIHPNNRQR 167
>sp|A5ISI5|MIAA_STAA9 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain JH9)
GN=miaA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIVK---QKLSALEH----- 139
Query: 84 EGLWKLDKEEKDDLFKVHDTDKIDELEGENDKR 116
LD ++ D D + + N +R
Sbjct: 140 -----LDNQQLHDYLAQFDAVSAENIHPNNRQR 167
>sp|Q2FYZ2|MIAA_STAA8 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain NCTC
8325) GN=miaA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIVK---QKLSALEH----- 139
Query: 84 EGLWKLDKEEKDDLFKVHDTDKIDELEGENDKR 116
LD ++ D D + + N +R
Sbjct: 140 -----LDNQQLHDYLAQFDAVSAENIHPNNRQR 167
>sp|Q2FHD6|MIAA_STAA3 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
USA300) GN=miaA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIVK---QKLSALEH----- 139
Query: 84 EGLWKLDKEEKDDLFKVHDTDKIDELEGENDKR 116
LD ++ D D + + N +R
Sbjct: 140 -----LDNQQLHDYLAQFDAVSAENIHPNNRQR 167
>sp|A6U1C1|MIAA_STAA2 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain JH1)
GN=miaA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIVK---QKLSALEH----- 139
Query: 84 EGLWKLDKEEKDDLFKVHDTDKIDELEGENDKR 116
LD ++ D D + + N +R
Sbjct: 140 -----LDNQQLHDYLAQFDAVSAENIHPNNRQR 167
>sp|A7X1U8|MIAA_STAA1 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain Mu3
/ ATCC 700698) GN=miaA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I DI R KVPII GGT YI+SL++ L+++T Q K+ LEH
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDETVTPAQLSIVK---QKLSALEH----- 139
Query: 84 EGLWKLDKEEKDDLFKVHDTDKIDELEGENDKR 116
LD ++ D D + + N +R
Sbjct: 140 -----LDNQQLHDYLAQFDAVSAENIHPNNRQR 167
>sp|Q49X96|MIAA_STAS1 tRNA dimethylallyltransferase OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=miaA PE=3 SV=1
Length = 315
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT---NINEQGEFTLYDIDKMRN 75
I +I R +VPIIVGGT YI+SL++ +++T +E E L ++D++ N
Sbjct: 88 IKEITHRGRVPIIVGGTGLYIQSLIYDYAFEDETISEAHSESVETQLAELDQLSN 142
>sp|Q6GHD2|MIAA_STAAR tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
MRSA252) GN=miaA PE=3 SV=1
Length = 311
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKT 57
I DI R KVPII GGT YI+SL++ L+++T
Sbjct: 88 ITDITNRGKVPIIAGGTGLYIQSLIYNYELEDET 121
>sp|A5N8I7|MIAA_CLOK5 tRNA dimethylallyltransferase OS=Clostridium kluyveri (strain ATCC
8527 / DSM 555 / NCIMB 10680) GN=miaA PE=3 SV=1
Length = 309
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTI-LLDNKTNINEQGEFTLYDIDKMRNLEHGRDV 82
I+DI RNK P++VGGT YI SL+ D K ++N + L ++ K++ E+ +
Sbjct: 84 IEDIYSRNKFPMLVGGTGLYINSLICNYDFTDAKVDVNYRN--YLENLAKVQGREYVHSL 141
Query: 83 LEGLWKLDKEE--KDDLFKVHDTDKIDELEGENDKRDNKREDLFKV 126
L+ + + E +DL +V ++ +L G+ N ++ L+ +
Sbjct: 142 LKDIDAVSYERLYPNDLKRVVRALEVHKLTGKTIGEFNSKDSLYDI 187
>sp|B9E1Z2|MIAA_CLOK1 tRNA dimethylallyltransferase OS=Clostridium kluyveri (strain NBRC
12016) GN=miaA PE=3 SV=1
Length = 309
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTI-LLDNKTNINEQGEFTLYDIDKMRNLEHGRDV 82
I+DI RNK P++VGGT YI SL+ D K ++N + L ++ K++ E+ +
Sbjct: 84 IEDIYSRNKFPMLVGGTGLYINSLICNYDFTDAKVDVNYRN--YLENLAKVQGREYVHSL 141
Query: 83 LEGLWKLDKEE--KDDLFKVHDTDKIDELEGENDKRDNKREDLFKV 126
L+ + + E +DL +V ++ +L G+ N ++ L+ +
Sbjct: 142 LKDIDAVSYERLYPNDLKRVVRALEVHKLTGKTIGEFNSKDSLYDI 187
>sp|Q5LZH6|MIAA_STRT1 tRNA dimethylallyltransferase OS=Streptococcus thermophilus (strain
CNRZ 1066) GN=miaA PE=3 SV=2
Length = 299
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 22 SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINE 61
+ I DI+ R K+PIIVGGT Y++SLL L K + N+
Sbjct: 83 AAITDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGKVDQNQ 122
>sp|B1MXL9|MIAA_LEUCK tRNA dimethylallyltransferase OS=Leuconostoc citreum (strain KM20)
GN=miaA PE=3 SV=1
Length = 294
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 18 VCRASQ-IDDILQRNKVPIIVGGTNYYIESLLWTILLD 54
V RA Q I+DI +R K+P+I GGT +Y+++LL LD
Sbjct: 77 VTRADQVINDIAKRGKLPVIAGGTGFYVKALLGQQPLD 114
>sp|Q5M430|MIAA_STRT2 tRNA dimethylallyltransferase OS=Streptococcus thermophilus (strain
ATCC BAA-250 / LMG 18311) GN=miaA PE=3 SV=2
Length = 299
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 22 SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINE 61
+ I DI+ R K+PIIVGGT Y++SLL L K + N+
Sbjct: 83 AAITDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGKVDQNQ 122
>sp|B9DPA1|MIAA_STACT tRNA dimethylallyltransferase OS=Staphylococcus carnosus (strain
TM300) GN=miaA PE=3 SV=1
Length = 316
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I +I +R +PII GGT YI+SL++ D K I+ + E + +KM LE
Sbjct: 88 ITEITERGHIPIIAGGTGLYIQSLIYDYPFD-KEEISPEKEQEVK--EKMAQLE------ 138
Query: 84 EGLWKLDKEEKDDLFKVHDTDKIDELEGENDKR 116
L E D K D D +++ N KR
Sbjct: 139 ----SLSNEALHDYLKSFDPDSAEDIHPNNRKR 167
>sp|Q9SB60|IPT4_ARATH Adenylate isopentenyltransferase 4 OS=Arabidopsis thaliana GN=IPT4
PE=1 SV=1
Length = 318
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 12 TATGGVVCRASQIDDILQRNKVPIIVGGTNYYIESLL 48
TA V A I +I QR K+PI+ GG+N YI +LL
Sbjct: 76 TAAEFRVMAAEAISEITQRKKLPILAGGSNSYIHALL 112
>sp|C0MDJ6|MIAA_STRS7 tRNA dimethylallyltransferase OS=Streptococcus equi subsp.
zooepidemicus (strain H70) GN=miaA PE=3 SV=1
Length = 296
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLL 48
I+DI+ R K+PIIVGGT Y++SLL
Sbjct: 86 IEDIVSRGKLPIIVGGTGLYLQSLL 110
>sp|B4U3M4|MIAA_STREM tRNA dimethylallyltransferase OS=Streptococcus equi subsp.
zooepidemicus (strain MGCS10565) GN=miaA PE=3 SV=1
Length = 296
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLL 48
I+DI+ R K+PIIVGGT Y++SLL
Sbjct: 86 IEDIVSRGKLPIIVGGTGLYLQSLL 110
>sp|Q24X66|MIAA_DESHY tRNA dimethylallyltransferase OS=Desulfitobacterium hafniense
(strain Y51) GN=miaA PE=3 SV=1
Length = 314
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 24/76 (31%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVL 83
I DI R KVPI+VGGT YI SL ID + EHG + +
Sbjct: 84 IQDIQSRGKVPIVVGGTGLYIRSL----------------------IDPFQFAEHGSESI 121
Query: 84 EGLWK--LDKEEKDDL 97
W L ++ K+ L
Sbjct: 122 RSFWTAFLSEQGKEAL 137
>sp|C0MAN2|MIAA_STRE4 tRNA dimethylallyltransferase OS=Streptococcus equi subsp. equi
(strain 4047) GN=miaA PE=3 SV=1
Length = 296
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLL 48
I+DI+ R K+PIIVGGT Y++SLL
Sbjct: 86 IEDIVSRGKLPIIVGGTGLYLQSLL 110
>sp|Q9UT75|MOD5_SCHPO tRNA dimethylallyltransferase, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=tit1 PE=3 SV=1
Length = 434
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 13/52 (25%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRN 75
ID+I + K+PI+VGGT+YY++SLL+ + TL IDK+ N
Sbjct: 85 IDEIHSQGKIPIVVGGTHYYLQSLLFE-------------DTTLSAIDKLTN 123
>sp|B5XL33|MIAA_STRPZ tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype
M49 (strain NZ131) GN=miaA PE=3 SV=1
Length = 299
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTN 58
I DI+ R K+PIIVGGT Y++SLL L + N
Sbjct: 86 ISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVN 120
>sp|Q03G75|MIAA_PEDPA tRNA dimethylallyltransferase OS=Pediococcus pentosaceus (strain
ATCC 25745 / 183-1w) GN=miaA PE=3 SV=1
Length = 310
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 38/114 (33%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHG---- 79
I +I QR K+PI+VGGT +Y+++LL R+LE G
Sbjct: 84 ISEISQRGKLPIVVGGTGFYLQALL-------------------------RDLELGGSNE 118
Query: 80 -RDVLEGL-WKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKRE-----DLFKV 126
R+ +E + +L+++E D+L + T ID EN R N+R ++FKV
Sbjct: 119 DRNQIEAIRTELNQKENDELLSILKT--IDLATYENIDRKNRRRIIRAIEVFKV 170
>sp|A9KL08|MIAA_CLOPH tRNA dimethylallyltransferase OS=Clostridium phytofermentans
(strain ATCC 700394 / DSM 18823 / ISDg) GN=miaA PE=3
SV=1
Length = 313
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 19 CRASQIDDILQRNKVPIIVGGTNYYIESLL 48
C I +I + KVPIIVGGT +YI+++L
Sbjct: 79 CAKEAIREIYSKGKVPIIVGGTGFYIQAVL 108
>sp|P07884|MOD5_YEAST tRNA dimethylallyltransferase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MOD5 PE=1
SV=2
Length = 428
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLL 48
I+DI +R K+PI+VGGT+YY+++L
Sbjct: 96 IEDIHRRGKIPIVVGGTHYYLQTLF 120
>sp|B1YMH0|MIAA_EXIS2 tRNA dimethylallyltransferase OS=Exiguobacterium sibiricum (strain
DSM 17290 / JCM 13490 / 255-15) GN=miaA PE=3 SV=1
Length = 312
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 22 SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRD 81
+ ID+I + K+PIIVGGT YI ++L+ D + + + + ++++ E
Sbjct: 86 TAIDEIAAKGKLPIIVGGTGLYIRAILY----DYQFTVQAENKVLREELEQFAQAEGATA 141
Query: 82 VLEGLWKLDKEEKDDL 97
+ + L +LD + D++
Sbjct: 142 LHDRLRQLDAKRADEI 157
>sp|Q5QWA0|MIAA_IDILO tRNA dimethylallyltransferase OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=miaA PE=3 SV=1
Length = 316
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLL--WTILLDNKTNINEQGEFTLYD 69
IDDI QR KVP++VGGT Y ++LL + L ++ T++ E+ L++
Sbjct: 87 IDDIQQRGKVPLLVGGTMLYFKALLEGLSHLPESDTSVREKLTAELHE 134
>sp|Q3KKS6|MIAA_CHLTA tRNA dimethylallyltransferase OS=Chlamydia trachomatis serovar A
(strain HAR-13 / ATCC VR-571B) GN=miaA PE=3 SV=1
Length = 339
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLL 48
DIL RNKVPI+VGGT +Y + L
Sbjct: 111 CQDILSRNKVPILVGGTGFYFHTFL 135
>sp|Q1J708|MIAA_STRPF tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype M4
(strain MGAS10750) GN=miaA PE=3 SV=1
Length = 299
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLL 48
I DI+ R K+PIIVGGT Y++SLL
Sbjct: 86 ISDIVSRGKLPIIVGGTGLYLQSLL 110
>sp|B0BAM1|MIAA_CHLTB tRNA dimethylallyltransferase OS=Chlamydia trachomatis serovar L2b
(strain UCH-1/proctitis) GN=miaA PE=3 SV=1
Length = 339
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 26 DILQRNKVPIIVGGTNYYIESLL 48
DIL RNKVPI+VGGT +Y + L
Sbjct: 113 DILSRNKVPILVGGTGFYFHTFL 135
>sp|B0B8Z2|MIAA_CHLT2 tRNA dimethylallyltransferase OS=Chlamydia trachomatis serovar L2
(strain 434/Bu / ATCC VR-902B) GN=miaA PE=3 SV=1
Length = 339
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 26 DILQRNKVPIIVGGTNYYIESLL 48
DIL RNKVPI+VGGT +Y + L
Sbjct: 113 DILSRNKVPILVGGTGFYFHTFL 135
>sp|Q5XCI0|MIAA_STRP6 tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=miaA PE=3 SV=1
Length = 299
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLL 48
I DI+ R K+PIIVGGT Y++SLL
Sbjct: 86 ISDIVSRGKLPIIVGGTGLYLQSLL 110
>sp|Q94ID2|IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis
thaliana GN=IPT5 PE=1 SV=2
Length = 330
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLL 48
++ I+QR++VPII GG+N YIE+L+
Sbjct: 116 VESIVQRDRVPIIAGGSNSYIEALV 140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.140 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,663,603
Number of Sequences: 539616
Number of extensions: 2418380
Number of successful extensions: 8408
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 8035
Number of HSP's gapped (non-prelim): 442
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)