Query psy17229
Match_columns 131
No_of_seqs 180 out of 1087
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 16:37:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01715 IPPT: IPP transferase 100.0 8.4E-35 1.8E-39 230.6 11.4 110 3-131 26-137 (253)
2 PRK14729 miaA tRNA delta(2)-is 100.0 2.8E-33 6E-38 226.9 12.4 110 3-131 62-173 (300)
3 COG0324 MiaA tRNA delta(2)-iso 100.0 5.1E-32 1.1E-36 219.9 11.8 110 3-131 62-173 (308)
4 TIGR00174 miaA tRNA isopenteny 100.0 1.6E-31 3.4E-36 215.5 11.5 110 3-131 58-169 (287)
5 PLN02748 tRNA dimethylallyltra 100.0 2.4E-31 5.3E-36 226.1 12.4 115 3-131 81-204 (468)
6 PLN02840 tRNA dimethylallyltra 100.0 3.8E-30 8.3E-35 216.2 11.8 109 3-131 80-195 (421)
7 PRK00091 miaA tRNA delta(2)-is 100.0 3.8E-28 8.2E-33 197.4 10.7 110 3-131 63-174 (307)
8 KOG1384|consensus 99.3 1.1E-12 2.4E-17 107.6 4.6 49 3-51 66-116 (348)
9 PLN02165 adenylate isopentenyl 99.3 3.3E-12 7.2E-17 105.3 5.0 50 3-52 102-154 (334)
10 COG2069 CdhD CO dehydrogenase/ 84.6 0.68 1.5E-05 38.6 2.1 20 22-41 189-208 (403)
11 cd04235 AAK_CK AAK_CK: Carbama 80.9 1.3 2.9E-05 36.5 2.5 20 22-41 172-191 (308)
12 PF15500 Toxin_39: Putative RN 72.2 17 0.00036 24.9 5.5 35 91-130 53-87 (96)
13 PF10743 Phage_Cox: Regulatory 72.2 5.7 0.00012 27.0 3.3 28 9-36 9-41 (87)
14 KOG1221|consensus 70.7 4 8.6E-05 35.6 2.8 68 30-109 11-81 (467)
15 PRK13773 formimidoylglutamase; 70.3 4.9 0.00011 32.9 3.2 29 22-50 110-138 (324)
16 PRK13775 formimidoylglutamase; 69.7 5.1 0.00011 32.9 3.2 37 14-50 104-142 (328)
17 PRK13776 formimidoylglutamase; 69.5 5.2 0.00011 32.7 3.2 36 15-50 99-136 (318)
18 TIGR01229 rocF_arginase argina 66.5 6.8 0.00015 31.6 3.3 23 22-44 74-96 (300)
19 PRK12454 carbamate kinase-like 66.4 5.1 0.00011 33.2 2.5 21 22-42 176-196 (313)
20 PRK13774 formimidoylglutamase; 66.4 7.6 0.00017 31.6 3.5 29 22-50 111-139 (311)
21 TIGR01227 hutG formimidoylglut 65.9 7.8 0.00017 31.4 3.5 29 22-50 102-130 (307)
22 TIGR01230 agmatinase agmatinas 65.9 8.5 0.00018 30.7 3.6 36 15-50 75-112 (275)
23 PRK14556 pyrH uridylate kinase 65.8 8.1 0.00018 30.9 3.5 32 4-41 115-146 (249)
24 PRK13772 formimidoylglutamase; 63.3 8.1 0.00018 31.5 3.1 23 22-44 107-129 (314)
25 cd02065 B12-binding_like B12 b 61.5 12 0.00026 25.2 3.3 21 22-42 68-90 (125)
26 PF00491 Arginase: Arginase fa 61.3 11 0.00025 29.6 3.6 34 18-51 66-100 (277)
27 PRK02190 agmatinase; Provision 61.2 16 0.00034 29.5 4.5 29 22-50 101-129 (301)
28 COG4359 Uncharacterized conser 59.8 14 0.00029 29.0 3.6 28 24-52 82-111 (220)
29 cd02868 PseudoU_synth_hTruB2_l 57.8 6.7 0.00015 30.9 1.7 16 37-52 171-186 (226)
30 cd02067 B12-binding B12 bindin 56.2 11 0.00023 25.7 2.4 21 22-42 69-91 (119)
31 cd02070 corrinoid_protein_B12- 55.6 11 0.00025 28.4 2.6 21 22-42 152-175 (201)
32 PRK01722 formimidoylglutamase; 53.7 20 0.00044 29.1 3.9 29 22-50 108-136 (320)
33 PRK12353 putative amino acid k 51.9 12 0.00025 30.8 2.3 22 22-43 176-197 (314)
34 TIGR02370 pyl_corrinoid methyl 50.7 17 0.00037 27.6 2.9 29 12-42 146-177 (197)
35 TIGR03263 guanyl_kin guanylate 47.4 20 0.00044 25.8 2.7 28 22-49 82-112 (180)
36 PRK00115 hemE uroporphyrinogen 47.3 40 0.00087 27.5 4.8 41 9-49 209-258 (346)
37 PF09970 DUF2204: Nucleotidyl 46.7 23 0.00049 26.7 3.0 23 22-44 7-29 (181)
38 TIGR01464 hemE uroporphyrinoge 46.6 47 0.001 26.9 5.1 41 9-49 203-252 (338)
39 PRK12354 carbamate kinase; Rev 45.7 18 0.00039 29.9 2.4 21 22-42 166-186 (307)
40 COG0528 PyrH Uridylate kinase 45.0 19 0.0004 28.9 2.3 18 25-42 119-136 (238)
41 PLN02775 Probable dihydrodipic 43.3 11 0.00023 31.0 0.7 17 30-46 102-118 (286)
42 PRK12686 carbamate kinase; Rev 41.8 22 0.00048 29.4 2.4 20 22-41 174-193 (312)
43 TIGR02137 HSK-PSP phosphoserin 41.1 38 0.00081 25.7 3.5 32 22-53 75-106 (203)
44 COG1954 GlpP Glycerol-3-phosph 39.5 23 0.0005 27.2 2.0 18 22-39 134-151 (181)
45 cd02068 radical_SAM_B12_BD B12 39.3 29 0.00062 23.9 2.4 20 22-41 57-77 (127)
46 PLN02615 arginase 38.8 83 0.0018 26.1 5.4 27 22-48 137-164 (338)
47 cd02072 Glm_B12_BD B12 binding 38.7 32 0.00068 24.8 2.5 19 22-40 69-89 (128)
48 KOG3048|consensus 37.8 6.2 0.00014 29.4 -1.3 8 38-45 89-96 (153)
49 cd02071 MM_CoA_mut_B12_BD meth 37.5 50 0.0011 22.8 3.4 21 22-42 69-91 (122)
50 COG2100 Predicted Fe-S oxidore 37.3 13 0.00029 31.5 0.4 44 80-124 204-247 (414)
51 TIGR00640 acid_CoA_mut_C methy 37.3 34 0.00074 24.4 2.6 19 22-40 72-92 (132)
52 PRK14558 pyrH uridylate kinase 36.5 32 0.00069 26.5 2.4 27 22-48 109-141 (231)
53 PF00994 MoCF_biosynth: Probab 36.4 35 0.00076 24.1 2.5 21 22-42 48-68 (144)
54 KOG2553|consensus 34.3 28 0.0006 30.1 1.9 18 30-53 36-55 (416)
55 cd02069 methionine_synthase_B1 34.2 52 0.0011 25.4 3.3 27 13-41 151-178 (213)
56 PF02310 B12-binding: B12 bind 33.9 57 0.0012 21.8 3.2 28 22-49 70-100 (121)
57 TIGR01501 MthylAspMutase methy 33.9 44 0.00095 24.2 2.7 20 22-41 71-92 (134)
58 PRK08202 purine nucleoside pho 33.7 43 0.00094 26.7 2.9 12 33-44 22-34 (272)
59 cd04254 AAK_UMPK-PyrH-Ec UMP k 33.7 37 0.00081 26.1 2.4 20 22-41 111-130 (231)
60 TIGR02130 dapB_plant dihydrodi 33.2 19 0.00041 29.3 0.7 19 29-47 90-108 (275)
61 cd04246 AAK_AK-DapG-like AAK_A 32.6 35 0.00076 26.3 2.1 20 22-41 117-136 (239)
62 cd00717 URO-D Uroporphyrinogen 31.2 1.1E+02 0.0024 24.6 4.9 41 9-49 200-249 (335)
63 PRK10949 protease 4; Provision 30.7 78 0.0017 28.6 4.2 49 2-52 368-422 (618)
64 TIGR01488 HAD-SF-IB Haloacid D 30.4 64 0.0014 22.8 3.1 30 22-51 80-110 (177)
65 cd04261 AAK_AKii-LysC-BS AAK_A 30.0 41 0.00089 26.0 2.1 19 22-40 117-135 (239)
66 PRK06153 hypothetical protein; 29.9 71 0.0015 27.4 3.6 45 6-50 145-197 (393)
67 PF08477 Miro: Miro-like prote 28.8 40 0.00087 22.1 1.7 35 7-41 81-117 (119)
68 COG0407 HemE Uroporphyrinogen- 28.8 74 0.0016 26.8 3.6 27 22-48 231-260 (352)
69 KOG1276|consensus 28.6 49 0.0011 29.1 2.5 31 12-42 439-470 (491)
70 PRK09552 mtnX 2-hydroxy-3-keto 28.4 66 0.0014 24.1 3.0 30 22-51 81-111 (219)
71 cd00950 DHDPS Dihydrodipicolin 28.2 2.9E+02 0.0063 21.6 6.8 23 30-52 177-199 (284)
72 cd04255 AAK_UMPK-MosAB AAK_UMP 28.0 43 0.00093 26.7 1.9 20 22-41 126-145 (262)
73 PRK13833 conjugal transfer pro 27.8 95 0.0021 25.7 4.0 41 11-51 116-168 (323)
74 COG0549 ArcC Carbamate kinase 27.8 52 0.0011 27.3 2.4 20 22-41 175-194 (312)
75 PF11629 Mst1_SARAH: C termina 27.7 40 0.00087 20.5 1.3 24 86-109 5-28 (49)
76 TIGR01764 excise DNA binding d 27.3 94 0.002 16.9 2.9 22 22-43 16-38 (49)
77 cd03052 GST_N_GDAP1 GST_N fami 27.3 30 0.00065 21.6 0.8 18 23-40 42-60 (73)
78 cd00885 cinA Competence-damage 27.0 48 0.0011 24.6 2.0 21 22-42 50-70 (170)
79 COG0010 SpeB Arginase/agmatina 27.0 1.2E+02 0.0026 24.6 4.4 37 14-50 83-121 (305)
80 COG1735 Php Predicted metal-de 26.8 18 0.00039 30.1 -0.4 15 36-50 91-105 (316)
81 COG4962 CpaF Flp pilus assembl 26.5 82 0.0018 26.7 3.4 43 10-52 144-194 (355)
82 KOG0867|consensus 26.0 20 0.00042 27.7 -0.3 19 24-43 45-63 (226)
83 KOG3985|consensus 25.9 25 0.00053 28.4 0.2 14 36-49 14-27 (283)
84 PF03018 Dirigent: Dirigent-li 25.6 23 0.0005 25.8 0.0 10 35-44 106-115 (144)
85 TIGR01463 mtaA_cmuA methyltran 25.5 1.3E+02 0.0029 24.2 4.5 38 12-49 208-253 (340)
86 COG0731 Fe-S oxidoreductases [ 25.5 40 0.00088 27.7 1.4 20 22-41 99-120 (296)
87 cd00758 MoCF_BD MoCF_BD: molyb 25.4 57 0.0012 22.9 2.0 21 22-42 50-70 (133)
88 COG1536 FliG Flagellar motor s 25.4 1.3E+02 0.0028 25.2 4.4 21 31-52 72-92 (339)
89 TIGR01125 MiaB-like tRNA modif 25.2 57 0.0012 27.5 2.3 20 22-42 57-76 (430)
90 cd00537 MTHFR Methylenetetrahy 24.7 84 0.0018 24.7 3.1 37 13-52 170-214 (274)
91 PF11460 DUF3007: Protein of u 24.7 1.1E+02 0.0023 21.5 3.2 27 80-106 69-95 (104)
92 COG0289 DapB Dihydrodipicolina 24.5 48 0.001 27.0 1.6 13 31-43 92-104 (266)
93 COG5008 PilU Tfp pilus assembl 24.4 62 0.0013 27.1 2.3 21 22-42 117-138 (375)
94 PRK14557 pyrH uridylate kinase 24.2 67 0.0015 25.4 2.4 18 25-42 119-136 (247)
95 PF02798 GST_N: Glutathione S- 24.0 62 0.0013 20.2 1.8 16 24-39 43-59 (76)
96 PF15448 NTS_2: N-terminal seg 23.9 37 0.0008 20.5 0.7 24 22-45 22-48 (51)
97 PF00175 NAD_binding_1: Oxidor 23.9 39 0.00085 22.0 0.9 8 35-42 1-8 (109)
98 PRK06635 aspartate kinase; Rev 23.9 54 0.0012 27.3 1.9 18 22-39 119-136 (404)
99 PRK05473 hypothetical protein; 23.6 1.5E+02 0.0033 20.0 3.7 40 81-123 26-68 (86)
100 PF12010 DUF3502: Domain of un 23.5 1.3E+02 0.0028 21.4 3.6 21 80-100 104-124 (134)
101 PF12728 HTH_17: Helix-turn-he 23.4 1.2E+02 0.0026 17.3 2.9 27 22-48 16-43 (51)
102 smart00477 NUC DNA/RNA non-spe 23.2 1.2E+02 0.0025 22.9 3.5 38 3-40 84-124 (209)
103 PF08030 NAD_binding_6: Ferric 23.2 36 0.00078 23.8 0.6 19 32-50 3-26 (156)
104 PF08599 Nbs1_C: DNA damage re 23.2 49 0.0011 21.2 1.2 14 30-43 15-28 (65)
105 PF00941 FAD_binding_5: FAD bi 23.0 76 0.0016 23.4 2.4 18 29-46 20-37 (171)
106 smart00852 MoCF_biosynth Proba 22.5 72 0.0016 22.2 2.1 20 22-41 49-68 (135)
107 KOG1903|consensus 22.3 67 0.0014 24.7 1.9 37 6-42 50-97 (217)
108 cd00209 DHFR Dihydrofolate red 22.3 1.1E+02 0.0023 22.1 3.0 27 22-48 82-108 (158)
109 TIGR02782 TrbB_P P-type conjug 22.2 1.4E+02 0.003 24.2 3.9 42 10-51 103-156 (299)
110 TIGR00177 molyb_syn molybdenum 21.9 72 0.0016 22.7 2.0 21 22-42 58-78 (144)
111 PLN02662 cinnamyl-alcohol dehy 21.7 55 0.0012 25.5 1.5 19 30-48 3-21 (322)
112 TIGR02075 pyrH_bact uridylate 21.7 83 0.0018 24.3 2.5 20 22-41 112-131 (233)
113 cd04234 AAK_AK AAK_AK: Amino A 21.6 1.1E+02 0.0023 23.5 3.0 18 22-39 103-121 (227)
114 PF06135 DUF965: Bacterial pro 21.4 1.4E+02 0.0031 19.9 3.2 41 80-123 22-65 (79)
115 COG4003 Uncharacterized protei 21.3 58 0.0013 22.3 1.3 23 99-122 61-83 (98)
116 cd05025 S-100A1 S-100A1: S-100 21.3 1.9E+02 0.004 18.7 3.8 38 90-128 50-87 (92)
117 PLN02989 cinnamyl-alcohol dehy 21.1 58 0.0013 25.6 1.5 21 29-49 3-23 (325)
118 PRK08564 5'-methylthioadenosin 21.0 35 0.00076 27.4 0.2 9 36-44 12-20 (267)
119 PRK08841 aspartate kinase; Val 20.4 74 0.0016 26.9 2.1 20 22-41 119-138 (392)
120 PLN02996 fatty acyl-CoA reduct 20.3 59 0.0013 28.1 1.5 23 30-52 10-32 (491)
121 TIGR02622 CDP_4_6_dhtase CDP-g 20.2 59 0.0013 26.0 1.4 18 30-47 3-20 (349)
122 PRK09411 carbamate kinase; Rev 20.2 80 0.0017 26.0 2.1 20 22-41 167-186 (297)
123 PF04309 G3P_antiterm: Glycero 20.2 28 0.00061 26.4 -0.5 18 22-39 130-147 (175)
124 smart00054 EFh EF-hand, calciu 20.1 35 0.00075 15.6 0.0 24 97-121 5-28 (29)
125 PRK08269 3-hydroxybutyryl-CoA 20.1 1.7E+02 0.0036 23.8 4.0 34 14-50 157-192 (314)
126 PRK01215 competence damage-ind 20.0 89 0.0019 25.0 2.3 21 22-42 54-74 (264)
No 1
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=100.00 E-value=8.4e-35 Score=230.60 Aligned_cols=110 Identities=30% Similarity=0.344 Sum_probs=91.0
Q ss_pred cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229 3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR 80 (131)
Q Consensus 3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~ 80 (131)
||++++|+++|||++|+++ ++|++|+++||+||||||||||++||++|+. +. |+.++.+| .
T Consensus 26 lid~~~p~e~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~-~~----p~~~~~~r------------~ 88 (253)
T PF01715_consen 26 LIDILDPDEEYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLA-DI----PEVDPELR------------A 88 (253)
T ss_dssp SSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS---T----SSSHHHHH------------H
T ss_pred eeeeecccCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChh-hh----ccccHHHH------------H
Confidence 7899999999999999997 8999999999999999999999999999986 44 34567777 7
Q ss_pred HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229 81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK 131 (131)
Q Consensus 81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~ 131 (131)
.+++.++..|.++||++|+++||++|++| ||||++||+||||| +..||+
T Consensus 89 ~~~~~~~~~~~~~l~~~L~~~DP~~A~~i-~~nd~~Ri~RALei-~~~tG~ 137 (253)
T PF01715_consen 89 ELRAELEEEGNEELYEELKEVDPEAAAKI-HPNDRRRIIRALEI-YELTGK 137 (253)
T ss_dssp HHHHHHHHSCHHHHHHHHHHC-HHHHCTS--TT-HHHHHHHHHH-HHHHSS
T ss_pred HHHHHHHhccHHHHHHHHHhhCcHhhhcC-CCCcHHHHHHHHHH-HHhcCC
Confidence 88888999999999999999999999999 99999999999999 888886
No 2
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=100.00 E-value=2.8e-33 Score=226.86 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=100.1
Q ss_pred cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229 3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR 80 (131)
Q Consensus 3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~ 80 (131)
||++++|.+.|||++|+++ ++|++|+++||+||||||||||++||++|+. .. |+.++.+| .
T Consensus 62 lid~~~p~e~~sv~~f~~~a~~~i~~i~~~gk~PilvGGTglYi~all~gl~-~~----p~~~~~~r------------~ 124 (300)
T PRK14729 62 LVDFLEPIKEYNLGIFYKEALKIIKELRQQKKIPIFVGGSAFYFKHLKYGLP-ST----PPVSSKIR------------I 124 (300)
T ss_pred eeeccCCCCceeHHHHHHHHHHHHHHHHHCCCCEEEEeCchHHHHHHHcCCC-CC----CCCCHHHH------------H
Confidence 7889999999999999997 8999999999999999999999999999975 33 34466677 6
Q ss_pred HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229 81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK 131 (131)
Q Consensus 81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~ 131 (131)
.+.+.++..|.++||++|+++||++|++| ||||++||+||||| +..||+
T Consensus 125 ~~~~~~~~~g~~~l~~~L~~~DP~~A~~i-~pnd~~Ri~RALEv-~~~tG~ 173 (300)
T PRK14729 125 YVNNLFTLKGKSYLLEELKRVDFIRYESI-NKNDIYRIKRSLEV-YYQTGI 173 (300)
T ss_pred HHHHHHHhcCHHHHHHHHHhcCHHHHhhC-CcCCHHHHHHHHHH-HHHhCC
Confidence 77777888999999999999999999999 99999999999999 888986
No 3
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.1e-32 Score=219.87 Aligned_cols=110 Identities=27% Similarity=0.298 Sum_probs=102.3
Q ss_pred cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229 3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR 80 (131)
Q Consensus 3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~ 80 (131)
||++.+|.+.|||++|.++ ..|++|.+|||+||||||||||++||+.|+. .. |+.++.+| .
T Consensus 62 liDi~~p~e~ysa~~f~~~a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~-~~----p~~~~~~r------------~ 124 (308)
T COG0324 62 LIDIRDPTESYSAAEFQRDALAAIDDILARGKLPILVGGTGLYLKALLEGLS-LL----PEADPEVR------------R 124 (308)
T ss_pred EecccCccccccHHHHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCC-CC----CCCCHHHH------------H
Confidence 7899999999999999997 8999999999999999999999999999987 44 45667777 7
Q ss_pred HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229 81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK 131 (131)
Q Consensus 81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~ 131 (131)
.++.+++..|+.+||+.|+++||++|++| ||||++|++||||| +..|||
T Consensus 125 ~~~~~~~~~g~~~L~~~L~~~Dp~~a~~i-~pnD~~Ri~RALEv-~~~tGk 173 (308)
T COG0324 125 RLEAELAELGNDALHAELKKIDPEAAAKI-HPNDPQRIIRALEV-YYLTGK 173 (308)
T ss_pred HHHHHHHhcCHHHHHHHHHhhCHHHHHhc-CCCchhHHHHHHHH-HHHHCC
Confidence 77889999999999999999999999999 99999999999999 999986
No 4
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=99.97 E-value=1.6e-31 Score=215.48 Aligned_cols=110 Identities=21% Similarity=0.221 Sum_probs=100.0
Q ss_pred cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229 3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR 80 (131)
Q Consensus 3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~ 80 (131)
+|+++++.+.|||++|..+ ++|++++++||+|||||||||||+||++|+. .. |+.++.+| .
T Consensus 58 lid~~~~~~~~~v~~f~~~a~~~i~~~~~~g~~pi~vGGTg~Yi~all~g~~-~~----p~~~~~~r------------~ 120 (287)
T TIGR00174 58 LIDILDPSESYSAADFQTLALNAIADITARGKIPLLVGGTGLYLKALLEGLS-PT----PSADKLIR------------E 120 (287)
T ss_pred EEEEechhheEcHHHHHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHcCCC-CC----CCCCHHHH------------H
Confidence 6778899999999999997 8999999999999999999999999999986 33 34466777 7
Q ss_pred HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229 81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK 131 (131)
Q Consensus 81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~ 131 (131)
.+.+.++..|++++|++|+++||++|++| ||||++||+||||| +..||+
T Consensus 121 ~l~~~~~~~g~~~l~~~L~~~DP~~a~~i-~~nd~~Ri~RALEi-~~~tG~ 169 (287)
T TIGR00174 121 QLEILAEEQGWDFLYNELKKVDPVAAAKI-HPNDTRRVQRALEV-FYATGK 169 (287)
T ss_pred HHHHHHHHcCHHHHHHHHHhcCHHHHHhc-CCccHHHHHHHHHH-HHHHCC
Confidence 77788888999999999999999999999 99999999999999 888986
No 5
>PLN02748 tRNA dimethylallyltransferase
Probab=99.97 E-value=2.4e-31 Score=226.06 Aligned_cols=115 Identities=27% Similarity=0.360 Sum_probs=96.8
Q ss_pred cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCc-CCCCCC----cchhhhhhhhhhc
Q psy17229 3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNK-TNINEQ----GEFTLYDIDKMRN 75 (131)
Q Consensus 3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~-~~~p~~----~~~~r~~~~~~~~ 75 (131)
||.+++|.++|||++|.++ .+|++|++|||+|||||||||||+||++|+.++.. ...|+. ++.+|
T Consensus 81 Lid~v~p~e~ysv~~F~~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~~~~~~~~~r-------- 152 (468)
T PLN02748 81 LLGVISPSVEFTAKDFRDHAVPLIEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVASVLD-------- 152 (468)
T ss_pred eEeecCCCCcCcHHHHHHHHHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcccccCCccccccccccCHHHH--------
Confidence 7889999999999999997 89999999999999999999999999999864322 111111 12334
Q ss_pred ccchHHH--HHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229 76 LEHGRDV--LEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK 131 (131)
Q Consensus 76 ~~~~~~~--~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~ 131 (131)
..+ ...++..|.++||++|+++||++|++| ||||+|||+||||| +..||+
T Consensus 153 ----~~l~~~~~~~~~g~~~l~~~L~~vDP~~A~ri-hpnD~rRI~RALEI-~~~TG~ 204 (468)
T PLN02748 153 ----EHMDVESGLGNDDEDHGYELLKELDPVAANRI-HPNNHRKINRYLEL-YATTGV 204 (468)
T ss_pred ----HHHHHHHHHHhcCHHHHHHHHHhhCHHHHhhc-CCccHHHHHHHHHH-HHHHCc
Confidence 444 356778899999999999999999999 99999999999999 888985
No 6
>PLN02840 tRNA dimethylallyltransferase
Probab=99.97 E-value=3.8e-30 Score=216.23 Aligned_cols=109 Identities=25% Similarity=0.319 Sum_probs=94.3
Q ss_pred cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229 3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR 80 (131)
Q Consensus 3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~ 80 (131)
||++++|.+.|||++|.++ ++|++|++|||+|||||||||||+||++|+. .. |+.++++| .
T Consensus 80 lidil~p~e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~-~~----p~~~~~~r------------~ 142 (421)
T PLN02840 80 LIDILHPSDDYSVGAFFDDARRATQDILNRGRVPIVAGGTGLYLRWYIYGKP-DV----PKSSPEIT------------S 142 (421)
T ss_pred eEeecCCCCceeHHHHHHHHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCC-CC----CCCCHHHH------------H
Confidence 7899999999999999997 8999999999999999999999999999986 34 34456666 5
Q ss_pred HHHHHHHh----cCHHHHHHHH-HhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229 81 DVLEGLWK----LDKEEKDDLF-KVHDTDKIDELEGENDKRDNKREDLFKVHNAGK 131 (131)
Q Consensus 81 ~~~~~l~~----~g~~~l~~~L-~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~ 131 (131)
.+++.+++ .|++++|++| +.+|| +|++| ||||++||+||||| +..||+
T Consensus 143 ~l~~~l~~~~~~~g~~~l~~~Ll~~~DP-~A~~i-~pnD~~Ri~RALEV-~~~TG~ 195 (421)
T PLN02840 143 EVWSELVDFQKNGDWDAAVELVVNAGDP-KARSL-PRNDWYRLRRSLEI-IKSSGS 195 (421)
T ss_pred HHHHHHHHhccccCHHHHHHHHHhccCc-HHHhc-CCCcHHHHHHHHHH-HHHHCC
Confidence 56666665 4588999985 66799 99999 99999999999999 888885
No 7
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=99.95 E-value=3.8e-28 Score=197.36 Aligned_cols=110 Identities=24% Similarity=0.211 Sum_probs=99.3
Q ss_pred cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229 3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR 80 (131)
Q Consensus 3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~ 80 (131)
+|.+.++.+.||+++|.+. +.|++++++|++||||||||||++||++|+. .. |+.++.+| .
T Consensus 63 lid~~~~~~~~s~~~f~~~a~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~-~~----p~~~~~~r------------~ 125 (307)
T PRK00091 63 LIDILDPTESYSVADFQRDALAAIADILARGKLPILVGGTGLYIKALLEGLS-PL----PPADPELR------------A 125 (307)
T ss_pred eecccChhhcccHHHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHhccCCC-CC----CCCCHHHH------------H
Confidence 6788999999999999997 8999999999999999999999999999976 43 44566666 6
Q ss_pred HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229 81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK 131 (131)
Q Consensus 81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~ 131 (131)
.+.....+.|++++|++|+++||++|++| ||||++||+||||| +..||+
T Consensus 126 ~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i-~~~d~~Ri~RAlEi-~~~tG~ 174 (307)
T PRK00091 126 ELEALAAEEGWEALHAELAEIDPEAAARI-HPNDPQRIIRALEV-YELTGK 174 (307)
T ss_pred HHHHHHHhcCHHHHHHHHHhcCHHHHhhc-CCCCCchhHHHHHH-HHHHCC
Confidence 67777788899999999999999999999 99999999999999 888986
No 8
>KOG1384|consensus
Probab=99.33 E-value=1.1e-12 Score=107.64 Aligned_cols=49 Identities=33% Similarity=0.524 Sum_probs=46.4
Q ss_pred cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcc
Q psy17229 3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTI 51 (131)
Q Consensus 3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~ 51 (131)
|++++++...||+++|..+ +.|++|++|||+|||||||++|++||+.+.
T Consensus 66 Llg~l~~~~e~t~~~F~~~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~ 116 (348)
T KOG1384|consen 66 LLGHLHPEAEYTAGEFEDDASRAIEEIHSRGKLPIVVGGSNSYLQALLSKR 116 (348)
T ss_pred HhCcCChHhhccHHHHHHHHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcC
Confidence 6788999999999999997 899999999999999999999999999994
No 9
>PLN02165 adenylate isopentenyltransferase
Probab=99.28 E-value=3.3e-12 Score=105.26 Aligned_cols=50 Identities=30% Similarity=0.460 Sum_probs=45.3
Q ss_pred cccCCCCCC-ccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhccc
Q psy17229 3 LIPQFPHLD-TATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTIL 52 (131)
Q Consensus 3 ~~~~~~~~e-~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~ 52 (131)
+++++++.+ .||+++|.++ .+|++|+++|++||+||||||||+||++|+.
T Consensus 102 li~~~~~~~~~~sv~~F~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~ 154 (334)
T PLN02165 102 LLGELNPDDGELTASEFRSLASLSISEITSRQKLPIVAGGSNSFIHALLADRF 154 (334)
T ss_pred hhheeccccceeeHHHHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCC
Confidence 566788876 8999999986 8999999999999999999999999999963
No 10
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=84.62 E-value=0.68 Score=38.58 Aligned_cols=20 Identities=45% Similarity=0.916 Sum_probs=18.6
Q ss_pred HHHHHHHhCCCceEEEcCCh
Q psy17229 22 SQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTg 41 (131)
+.++++++.=++||++||||
T Consensus 189 k~lEdvLqAVdvPiiiGGSG 208 (403)
T COG2069 189 KTLEDVLQAVDVPIIIGGSG 208 (403)
T ss_pred HHHHHHHHhcCcCEEecCCC
Confidence 77999999999999999986
No 11
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=80.90 E-value=1.3 Score=36.47 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCceEEEcCCh
Q psy17229 22 SQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTg 41 (131)
+.|+.++++|.+||++||+|
T Consensus 172 ~~I~~Ll~~g~IpI~~GggG 191 (308)
T cd04235 172 EAIKTLVDNGVIVIAAGGGG 191 (308)
T ss_pred HHHHHHHHCCCEEEEECCCc
Confidence 77899999999999999965
No 12
>PF15500 Toxin_39: Putative RNase-like toxin
Probab=72.21 E-value=17 Score=24.95 Aligned_cols=35 Identities=11% Similarity=-0.082 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcC
Q psy17229 91 KEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAG 130 (131)
Q Consensus 91 ~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g 130 (131)
|.+-.+-+++.||+.|+.= -.+++|+||-.-.|.|
T Consensus 53 wne~vq~~Rk~dp~~aAde-----aakLi~alE~ar~ngg 87 (96)
T PF15500_consen 53 WNETVQAKRKLDPKFAADE-----AAKLIQALETARNNGG 87 (96)
T ss_pred HHHHHHHHHhhchhhhHHH-----HHHHHHHHHHHHhcCC
Confidence 4455677889999988653 5889999998444544
No 13
>PF10743 Phage_Cox: Regulatory phage protein cox; InterPro: IPR019679 Phage Cox proteins are expressed by Enterobacteria phages. The Cox protein is a 79-residue basic protein with a predicted strong helix-turn-helix DNA-binding motif. It inhibits integrative recombination and it activates site-specific excision of the HP1 genome from the Haemophilus influenzae chromosome, Hp1. Cox appears to function as a tetramer. Cox binding sites consist of two direct repeats of the consensus motif 5'-GGTMAWWWWA, one Cox tetramer binding to each motif. Cox binding interferes with the interaction of HP1 integrase with one of its binding sites, IBS5. This competition is central to directional control. Both Cox binding sites are needed for full inhibition of integration and for activating excision, because it plays a positive role in assembling the nucleoprotein complexes that produce excisive recombination, by inducing the formation of a critical conformation in those complexes [].
Probab=72.18 E-value=5.7 Score=27.04 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.1
Q ss_pred CCCccCHHHHHHH-----HHHHHHHhCCCceEE
Q psy17229 9 HLDTATGGVVCRA-----SQIDDILQRNKVPII 36 (131)
Q Consensus 9 ~~e~ysv~~f~~~-----~~I~~i~~rgkiPIl 36 (131)
|.+-.++..|... .++..+.++||+|++
T Consensus 9 p~d~v~~~~FA~~IGKt~sAVr~Mi~~gKLP~i 41 (87)
T PF10743_consen 9 PSDAVTYEKFAEYIGKTPSAVRKMIKAGKLPVI 41 (87)
T ss_pred hccccCHHHHHHHHCCCHHHHHHHHHcCCCCeE
Confidence 4567788999885 899999999999997
No 14
>KOG1221|consensus
Probab=70.69 E-value=4 Score=35.63 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=41.6
Q ss_pred CCCceEEEcCChHHHHHHHhcccccCcCCCCCCc---chhhhhhhhhhcccchHHHHHHHHhcCHHHHHHHHHhcChhhh
Q psy17229 30 RNKVPIIVGGTNYYIESLLWTILLDNKTNINEQG---EFTLYDIDKMRNLEHGRDVLEGLWKLDKEEKDDLFKVHDTDKI 106 (131)
Q Consensus 30 rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~---~~~r~~~~~~~~~~~~~~~~~~l~~~g~~~l~~~L~~~DP~~A 106 (131)
+||.-+|.|||||-=+.|+.-++-.. |++. -.+|.+- ..+..+.++..-.+.|++.|++.-|++-
T Consensus 11 ~~k~i~vTG~tGFlgKVliEklLr~~----p~v~~IYlLiR~k~--------g~~~~~Rl~~~~~~~lF~~l~~~~p~~l 78 (467)
T KOG1221|consen 11 KNKTIFVTGATGFLGKVLIEKLLRTT----PDVKRIYLLIRAKK--------GKAAQERLRTELKDPLFEVLKEKKPEAL 78 (467)
T ss_pred CCCeEEEEcccchhHHHHHHHHHhcC----cCcceEEEEEecCC--------CCCHHHHHHHHHhhhHHHHHHhhCccce
Confidence 58888999999999999998875222 2221 1223100 0222233333333478899988888766
Q ss_pred hhc
Q psy17229 107 DEL 109 (131)
Q Consensus 107 ~~i 109 (131)
.++
T Consensus 79 ~Kv 81 (467)
T KOG1221|consen 79 EKV 81 (467)
T ss_pred ecc
Confidence 665
No 15
>PRK13773 formimidoylglutamase; Provisional
Probab=70.32 E-value=4.9 Score=32.95 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229 22 SQIDDILQRNKVPIIVGGTNYYIESLLWT 50 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTglYi~sLl~g 50 (131)
+.+.++.++|++||+.||-+----..+.+
T Consensus 110 ~~v~~~~~~g~~PivLGGdHsit~g~~~a 138 (324)
T PRK13773 110 DAVSALLDAGHLPVVLGGGHETAFGSYLG 138 (324)
T ss_pred HHHHHHHHCCCeeEEECCchHHHHHhHHH
Confidence 78999999999999999997654444444
No 16
>PRK13775 formimidoylglutamase; Provisional
Probab=69.74 E-value=5.1 Score=32.91 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=26.4
Q ss_pred CHHHHHH-H-HHHHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229 14 TGGVVCR-A-SQIDDILQRNKVPIIVGGTNYYIESLLWT 50 (131)
Q Consensus 14 sv~~f~~-~-~~I~~i~~rgkiPIlVGGTglYi~sLl~g 50 (131)
+..+..+ . +.+.++.++|++||+.||-+----..+.|
T Consensus 104 ~~~~~~~~l~~~v~~~~~~g~~PivlGGdHsit~g~~~g 142 (328)
T PRK13775 104 SLEQLQNSLSKAIKRMCDLNLKPIVLGGGHETAYGHYLG 142 (328)
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEcCcHHHHHHHHHH
Confidence 3444433 3 78899999999999999987654444444
No 17
>PRK13776 formimidoylglutamase; Provisional
Probab=69.52 E-value=5.2 Score=32.73 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=25.6
Q ss_pred HHHHHH-H-HHHHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229 15 GGVVCR-A-SQIDDILQRNKVPIIVGGTNYYIESLLWT 50 (131)
Q Consensus 15 v~~f~~-~-~~I~~i~~rgkiPIlVGGTglYi~sLl~g 50 (131)
+..... . +.+.++.++|++||++||-+----..+.+
T Consensus 99 ~~~~~~~i~~~v~~i~~~g~~Pi~lGGdHsit~g~~~a 136 (318)
T PRK13776 99 LEAAQSRYAQRVHDLLDRGHLPIGLGGGHEIAWASFQG 136 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHhHHH
Confidence 444444 3 78888999999999999987654444433
No 18
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=66.51 E-value=6.8 Score=31.63 Aligned_cols=23 Identities=13% Similarity=0.603 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCceEEEcCChHHH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNYYI 44 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTglYi 44 (131)
+.+.++.++|++||+.||-+---
T Consensus 74 ~~v~~~~~~g~~pi~lGGdHsi~ 96 (300)
T TIGR01229 74 PKVYEVFEEGRFPLVLGGDHSIA 96 (300)
T ss_pred HHHHHHHhCCCeeEEEcCcchhh
Confidence 78888999999999999986443
No 19
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=66.36 E-value=5.1 Score=33.19 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=18.6
Q ss_pred HHHHHHHhCCCceEEEcCChH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTgl 42 (131)
+.|+.++..|.+||++||+|.
T Consensus 176 ~aI~~LLe~G~IvI~~GgGGi 196 (313)
T PRK12454 176 EVIKALVENGFIVIASGGGGI 196 (313)
T ss_pred HHHHHHHHCCCEEEEeCCCcc
Confidence 688999999999999999754
No 20
>PRK13774 formimidoylglutamase; Provisional
Probab=66.36 E-value=7.6 Score=31.63 Aligned_cols=29 Identities=7% Similarity=0.132 Sum_probs=22.6
Q ss_pred HHHHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229 22 SQIDDILQRNKVPIIVGGTNYYIESLLWT 50 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTglYi~sLl~g 50 (131)
+.+.++.++|++||+.||-+----..+.+
T Consensus 111 ~~v~~i~~~g~~pivlGGdHsit~g~~~a 139 (311)
T PRK13774 111 MLAAKSIANHRQTFLLGGGHDIAYAQYLA 139 (311)
T ss_pred HHHHHHHHCCCeEEEEcCchHHHHHHHHH
Confidence 78889999999999999986654444433
No 21
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=65.90 E-value=7.8 Score=31.41 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=23.0
Q ss_pred HHHHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229 22 SQIDDILQRNKVPIIVGGTNYYIESLLWT 50 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTglYi~sLl~g 50 (131)
+.+.++.++|++||+.||-+.---+.+.+
T Consensus 102 ~~v~~~~~~g~~Pi~lGGdHsit~~~~~a 130 (307)
T TIGR01227 102 QTAAALLADHRVPVILGGGHSIAYATFAA 130 (307)
T ss_pred HHHHHHHhcCCeEEEECCcchhHHHHHHH
Confidence 78899999999999999997654444444
No 22
>TIGR01230 agmatinase agmatinase. Note: a history of early misannotation of members of this family is detailed in PUBMED:10931887.
Probab=65.89 E-value=8.5 Score=30.65 Aligned_cols=36 Identities=14% Similarity=0.373 Sum_probs=25.6
Q ss_pred HHHHHH-H-HHHHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229 15 GGVVCR-A-SQIDDILQRNKVPIIVGGTNYYIESLLWT 50 (131)
Q Consensus 15 v~~f~~-~-~~I~~i~~rgkiPIlVGGTglYi~sLl~g 50 (131)
+....+ . +.+.++.++|++||++||-+.=--.++.+
T Consensus 75 ~~~~~~~i~~~v~~~~~~~~~pi~lGGdHsis~~~i~a 112 (275)
T TIGR01230 75 AREMFEKIQEHAEEFLEEGKFPVAIGGEHSITLPVIRA 112 (275)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEecCcchhhHHHHHH
Confidence 444444 3 77888999999999999987644444443
No 23
>PRK14556 pyrH uridylate kinase; Provisional
Probab=65.80 E-value=8.1 Score=30.93 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=20.2
Q ss_pred ccCCCCCCccCHHHHHHHHHHHHHHhCCCceEEEcCCh
Q psy17229 4 IPQFPHLDTATGGVVCRASQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 4 ~~~~~~~e~ysv~~f~~~~~I~~i~~rgkiPIlVGGTg 41 (131)
|+.....+.|+... +.+.+++|+++|++||||
T Consensus 115 ~~~~~~~e~~~~~~------~~~~l~~g~vvi~~gg~G 146 (249)
T PRK14556 115 KGVDGLLKVASAHE------FNQELAKGRVLIFAGGTG 146 (249)
T ss_pred cccCcCCCCCCHHH------HHHHHhCCCEEEEECCCC
Confidence 33444555663322 234467899999999985
No 24
>PRK13772 formimidoylglutamase; Provisional
Probab=63.28 E-value=8.1 Score=31.51 Aligned_cols=23 Identities=17% Similarity=0.472 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCceEEEcCChHHH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNYYI 44 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTglYi 44 (131)
+.+.++.++|++||+.||-+---
T Consensus 107 ~~v~~~~~~g~~PivlGGdHsit 129 (314)
T PRK13772 107 EVVAEVLAAGARPLVLGGGHEVA 129 (314)
T ss_pred HHHHHHHHCCCEEEEEcCchHHH
Confidence 78889999999999999986543
No 25
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=61.48 E-value=12 Score=25.22 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=14.1
Q ss_pred HHHHHHHhCC--CceEEEcCChH
Q psy17229 22 SQIDDILQRN--KVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rg--kiPIlVGGTgl 42 (131)
+.+..+.++. +++|+|||.+.
T Consensus 68 ~~~~~~~~~~p~~~~ivvGG~~~ 90 (125)
T cd02065 68 KLVIEALKELGIDIPVVVGGAHP 90 (125)
T ss_pred HHHHHHHHhcCCCCeEEEeCCcC
Confidence 5455555544 69999999553
No 26
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=61.27 E-value=11 Score=29.59 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=26.5
Q ss_pred HHHH-HHHHHHHhCCCceEEEcCChHHHHHHHhcc
Q psy17229 18 VCRA-SQIDDILQRNKVPIIVGGTNYYIESLLWTI 51 (131)
Q Consensus 18 f~~~-~~I~~i~~rgkiPIlVGGTglYi~sLl~g~ 51 (131)
+.+. +.+.++.++|++||+.||-+.---+++.++
T Consensus 66 ~~~l~~~v~~~~~~g~~pi~lGGdhsis~~~~~~l 100 (277)
T PF00491_consen 66 FERLAEAVAEVLEAGAFPIVLGGDHSISYGTIAAL 100 (277)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEESSGGGHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCEEEecCCCchhHHHhHHHH
Confidence 4444 788889999999999999987766666554
No 27
>PRK02190 agmatinase; Provisional
Probab=61.24 E-value=16 Score=29.52 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229 22 SQIDDILQRNKVPIIVGGTNYYIESLLWT 50 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTglYi~sLl~g 50 (131)
+.++++.++|++||+.||-+.---+.+.+
T Consensus 101 ~~v~~~~~~g~~pi~lGGdHsit~~~~~a 129 (301)
T PRK02190 101 AHAEKILAAGKRMLTLGGDHFITLPLLRA 129 (301)
T ss_pred HHHHHHHhCCCeEEEECCcchhhHHHHHH
Confidence 78888999999999999987765555544
No 28
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=59.76 E-value=14 Score=29.04 Aligned_cols=28 Identities=21% Similarity=0.458 Sum_probs=19.5
Q ss_pred HHHHHhCCCceE--EEcCChHHHHHHHhccc
Q psy17229 24 IDDILQRNKVPI--IVGGTNYYIESLLWTIL 52 (131)
Q Consensus 24 I~~i~~rgkiPI--lVGGTglYi~sLl~g~~ 52 (131)
++-|.+ +.+|+ |.||+.+||..|+.|+.
T Consensus 82 ~e~ike-~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 82 VEWIKE-HDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred HHHHHH-cCCCEEEEeCCCchHHHHHHHhhc
Confidence 333444 34444 44999999999999975
No 29
>cd02868 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like. This group consists of eukaryotic pseudouridine synthases similar to human TruB pseudouridine synthase homolog 2 (TRUB2). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=57.75 E-value=6.7 Score=30.89 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.8
Q ss_pred EcCChHHHHHHHhccc
Q psy17229 37 VGGTNYYIESLLWTIL 52 (131)
Q Consensus 37 VGGTglYi~sLl~g~~ 52 (131)
..|||.||+||...+-
T Consensus 171 skGT~~YIRsL~~Dig 186 (226)
T cd02868 171 INETQEYLRKLIHEIG 186 (226)
T ss_pred ECCCHHHHHHHHHHHH
Confidence 4799999999998764
No 30
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=56.18 E-value=11 Score=25.74 Aligned_cols=21 Identities=24% Similarity=0.646 Sum_probs=15.7
Q ss_pred HHHHHHHhCC--CceEEEcCChH
Q psy17229 22 SQIDDILQRN--KVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rg--kiPIlVGGTgl 42 (131)
++++.+.+.+ +++|++||...
T Consensus 69 ~~i~~l~~~~~~~~~i~vGG~~~ 91 (119)
T cd02067 69 EVIEELKEAGLDDIPVLVGGAIV 91 (119)
T ss_pred HHHHHHHHcCCCCCeEEEECCCC
Confidence 5666666665 59999999763
No 31
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=55.56 E-value=11 Score=28.44 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=15.8
Q ss_pred HHHHHHHhCC---CceEEEcCChH
Q psy17229 22 SQIDDILQRN---KVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rg---kiPIlVGGTgl 42 (131)
+.|+.+.+.+ +++|+|||..+
T Consensus 152 ~~i~~lr~~~~~~~~~i~vGG~~~ 175 (201)
T cd02070 152 EVIEALKEAGLRDKVKVMVGGAPV 175 (201)
T ss_pred HHHHHHHHCCCCcCCeEEEECCcC
Confidence 5566666665 69999999765
No 32
>PRK01722 formimidoylglutamase; Provisional
Probab=53.73 E-value=20 Score=29.11 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=22.6
Q ss_pred HHHHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229 22 SQIDDILQRNKVPIIVGGTNYYIESLLWT 50 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTglYi~sLl~g 50 (131)
+.+.++.++|++||+.||-+.---+.+.+
T Consensus 108 ~~v~~~~~~g~~pi~lGGdHsit~~~~~a 136 (320)
T PRK01722 108 DTVGHCLRPNMRTIVLGGGHEIAFGSFAG 136 (320)
T ss_pred HHHHHHHhCCCeeEEEcCchHHHHHHHHH
Confidence 78888999999999999987654444444
No 33
>PRK12353 putative amino acid kinase; Reviewed
Probab=51.88 E-value=12 Score=30.75 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCceEEEcCChHH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNYY 43 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTglY 43 (131)
+.|+.+++.|.+||+.||+|.-
T Consensus 176 ~~i~~lL~~g~IpV~~g~gg~P 197 (314)
T PRK12353 176 EAIKTLVDAGQVVIAAGGGGIP 197 (314)
T ss_pred HHHHHHHHCCCEEEEcCCCCCC
Confidence 8899999999999999996544
No 34
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=50.74 E-value=17 Score=27.56 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=18.5
Q ss_pred ccCHHHHHHHHHHHHHHhC---CCceEEEcCChH
Q psy17229 12 TATGGVVCRASQIDDILQR---NKVPIIVGGTNY 42 (131)
Q Consensus 12 ~ysv~~f~~~~~I~~i~~r---gkiPIlVGGTgl 42 (131)
..+...+. +.|+.+.+. .+++|+|||.-+
T Consensus 146 ~~~~~~~~--~~i~~l~~~~~~~~v~i~vGG~~~ 177 (197)
T TIGR02370 146 TTTMYGQK--DINDKLKEEGYRDSVKFMVGGAPV 177 (197)
T ss_pred ccCHHHHH--HHHHHHHHcCCCCCCEEEEEChhc
Confidence 34444443 456666655 469999999664
No 35
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=47.41 E-value=20 Score=25.79 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=23.0
Q ss_pred HHHHHHHhCCCceEE---EcCChHHHHHHHh
Q psy17229 22 SQIDDILQRNKVPII---VGGTNYYIESLLW 49 (131)
Q Consensus 22 ~~I~~i~~rgkiPIl---VGGTglYi~sLl~ 49 (131)
..|+.++..|+++|+ ++|...+.+++..
T Consensus 82 ~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~ 112 (180)
T TIGR03263 82 SPVEEALAAGKDVLLEIDVQGARQVKKKFPD 112 (180)
T ss_pred HHHHHHHHCCCeEEEECCHHHHHHHHHhCCC
Confidence 568899999999999 6788888888744
No 36
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=47.29 E-value=40 Score=27.54 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=31.2
Q ss_pred CCCccCHHHHHHH------HHHHHHHhCC-CceEE--EcCChHHHHHHHh
Q psy17229 9 HLDTATGGVVCRA------SQIDDILQRN-KVPII--VGGTNYYIESLLW 49 (131)
Q Consensus 9 ~~e~ysv~~f~~~------~~I~~i~~rg-kiPIl--VGGTglYi~sLl~ 49 (131)
...-.|-..|.+. ++++.+.++| ..||+ ||||+.+++.+.+
T Consensus 209 ~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~~~~~~~ 258 (346)
T PRK00115 209 WAGALSPADYREFVLPYMKRIVAELKREHPDVPVILFGKGAGELLEAMAE 258 (346)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCcHHHHHHHHh
Confidence 3456788888762 7788888876 66776 8999999988765
No 37
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=46.69 E-value=23 Score=26.72 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCceEEEcCChHHH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNYYI 44 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTglYi 44 (131)
.+++.+.++|--++|||||-+.+
T Consensus 7 ~~~~~L~~~gv~~~ivGG~av~l 29 (181)
T PF09970_consen 7 EILEELNKRGVEYVIVGGAAVNL 29 (181)
T ss_pred HHHHHHHHcCCeEEEECHHHHHH
Confidence 56777777777799999987653
No 38
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=46.64 E-value=47 Score=26.89 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCCccCHHHHHHH------HHHHHHHhC-CCceEE--EcCChHHHHHHHh
Q psy17229 9 HLDTATGGVVCRA------SQIDDILQR-NKVPII--VGGTNYYIESLLW 49 (131)
Q Consensus 9 ~~e~ysv~~f~~~------~~I~~i~~r-gkiPIl--VGGTglYi~sLl~ 49 (131)
...-.|...|.+- ++++.+.+. |..||+ ||||.-+++.+.+
T Consensus 203 ~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~cg~~~~~~~~~~~ 252 (338)
T TIGR01464 203 WAGALSPEDFEEFVLPYLKKIIEEVKARLPNVPVILFAKGAGHLLEELAE 252 (338)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHh
Confidence 3456788888762 678888776 566776 9999988887775
No 39
>PRK12354 carbamate kinase; Reviewed
Probab=45.74 E-value=18 Score=29.90 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCceEEEcCChH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTgl 42 (131)
+.|+.++++|.+||.+||-|.
T Consensus 166 ~~I~~Ll~~g~ivIa~GGGGI 186 (307)
T PRK12354 166 RPIRWLLEKGHLVICAGGGGI 186 (307)
T ss_pred HHHHHHHHCCCEEEEeCCCcc
Confidence 789999999998888877653
No 40
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=45.02 E-value=19 Score=28.86 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=14.6
Q ss_pred HHHHhCCCceEEEcCChH
Q psy17229 25 DDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 25 ~~i~~rgkiPIlVGGTgl 42 (131)
.+.+++|+++|..||||-
T Consensus 119 ~~~l~~grVvIf~gGtg~ 136 (238)
T COG0528 119 IRHLEKGRVVIFGGGTGN 136 (238)
T ss_pred HHHHHcCCEEEEeCCCCC
Confidence 345678999999999874
No 41
>PLN02775 Probable dihydrodipicolinate reductase
Probab=43.27 E-value=11 Score=30.97 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=13.8
Q ss_pred CCCceEEEcCChHHHHH
Q psy17229 30 RNKVPIIVGGTNYYIES 46 (131)
Q Consensus 30 rgkiPIlVGGTglYi~s 46 (131)
+.++|+|||=||+.-+-
T Consensus 102 ~~g~~~VvGTTG~~~e~ 118 (286)
T PLN02775 102 KNGLPFVMGTTGGDRDR 118 (286)
T ss_pred HCCCCEEEECCCCCHHH
Confidence 46789999999988664
No 42
>PRK12686 carbamate kinase; Reviewed
Probab=41.83 E-value=22 Score=29.41 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCceEEEcCCh
Q psy17229 22 SQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTg 41 (131)
.+|+.++++|-+||.+||-|
T Consensus 174 ~~I~~Ll~~G~IpI~~Gggg 193 (312)
T PRK12686 174 DTIRTLVDGGNIVIACGGGG 193 (312)
T ss_pred HHHHHHHHCCCEEEEeCCCC
Confidence 78999999999999998844
No 43
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=41.11 E-value=38 Score=25.75 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCceEEEcCChHHHHHHHhcccc
Q psy17229 22 SQIDDILQRNKVPIIVGGTNYYIESLLWTILL 53 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~ 53 (131)
+.|+.+.+++++-|+.||...|++.++..+.+
T Consensus 75 ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi 106 (203)
T TIGR02137 75 EFVDWLRERFQVVILSDTFYEFSQPLMRQLGF 106 (203)
T ss_pred HHHHHHHhCCeEEEEeCChHHHHHHHHHHcCC
Confidence 67888888889999999999999999977643
No 44
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=39.49 E-value=23 Score=27.16 Aligned_cols=18 Identities=39% Similarity=0.852 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCceEEEcC
Q psy17229 22 SQIDDILQRNKVPIIVGG 39 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGG 39 (131)
+.|++|.++-++||+.||
T Consensus 134 kvi~~i~~~t~~piIAGG 151 (181)
T COG1954 134 KVIKEITEKTHIPIIAGG 151 (181)
T ss_pred HHHHHHHHhcCCCEEecc
Confidence 689999999999999999
No 45
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=39.28 E-value=29 Score=23.92 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=14.0
Q ss_pred HHHHHHHhCC-CceEEEcCCh
Q psy17229 22 SQIDDILQRN-KVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rg-kiPIlVGGTg 41 (131)
.+++.+.+++ .++|++||..
T Consensus 57 ~~~~~ik~~~p~~~iv~GG~~ 77 (127)
T cd02068 57 ELAKIAKEVLPNVIVVVGGPH 77 (127)
T ss_pred HHHHHHHHHCCCCEEEECCcc
Confidence 4555555544 5999999976
No 46
>PLN02615 arginase
Probab=38.84 E-value=83 Score=26.08 Aligned_cols=27 Identities=11% Similarity=0.367 Sum_probs=20.3
Q ss_pred HHHHHHHhC-CCceEEEcCChHHHHHHH
Q psy17229 22 SQIDDILQR-NKVPIIVGGTNYYIESLL 48 (131)
Q Consensus 22 ~~I~~i~~r-gkiPIlVGGTglYi~sLl 48 (131)
+.+..+.++ +++||+.||-+.---.++
T Consensus 137 ~~v~~ll~~~~~~Pi~LGGDHsit~~~i 164 (338)
T PLN02615 137 ESVKLVMEEEPLRPLVLGGDHSISYPVV 164 (338)
T ss_pred HHHHHHHhcCCCceEEECcchHhhHHHH
Confidence 778888885 679999999876543443
No 47
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=38.65 E-value=32 Score=24.81 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=13.8
Q ss_pred HHHHHHHhCC--CceEEEcCC
Q psy17229 22 SQIDDILQRN--KVPIIVGGT 40 (131)
Q Consensus 22 ~~I~~i~~rg--kiPIlVGGT 40 (131)
+.++.+.++| .+||+|||.
T Consensus 69 ~~~~~l~~~gl~~v~vivGG~ 89 (128)
T cd02072 69 GLREKCDEAGLKDILLYVGGN 89 (128)
T ss_pred HHHHHHHHCCCCCCeEEEECC
Confidence 4566666654 699999995
No 48
>KOG3048|consensus
Probab=37.80 E-value=6.2 Score=29.38 Aligned_cols=8 Identities=63% Similarity=1.136 Sum_probs=6.6
Q ss_pred cCChHHHH
Q psy17229 38 GGTNYYIE 45 (131)
Q Consensus 38 GGTglYi~ 45 (131)
=|||||++
T Consensus 89 IGTGYyVE 96 (153)
T KOG3048|consen 89 IGTGYYVE 96 (153)
T ss_pred ccCceEEe
Confidence 49999975
No 49
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=37.45 E-value=50 Score=22.82 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=15.0
Q ss_pred HHHHHHHhC--CCceEEEcCChH
Q psy17229 22 SQIDDILQR--NKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~r--gkiPIlVGGTgl 42 (131)
++++.+.++ .+++|++||+..
T Consensus 69 ~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 69 EVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC
Confidence 556666665 269999999864
No 50
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=37.34 E-value=13 Score=31.51 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHH
Q psy17229 80 RDVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLF 124 (131)
Q Consensus 80 ~~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei 124 (131)
.++-++|++.|.+..---+.++||+.|..+ +-.+.+-+.+.||+
T Consensus 204 ~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L-~G~~dYdv~kvle~ 247 (414)
T COG2100 204 KKLVDELEEAGLDRINLSVDALDPKLAKML-AGRKDYDVKKVLEV 247 (414)
T ss_pred HHHHHHHHHhCCceEEeecccCCHHHHHHh-cCccccCHHHHHHH
Confidence 566677887776666556788999999999 87777777777765
No 51
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.25 E-value=34 Score=24.43 Aligned_cols=19 Identities=16% Similarity=0.403 Sum_probs=14.2
Q ss_pred HHHHHHHhCC--CceEEEcCC
Q psy17229 22 SQIDDILQRN--KVPIIVGGT 40 (131)
Q Consensus 22 ~~I~~i~~rg--kiPIlVGGT 40 (131)
.+++.+.++| +++|++||.
T Consensus 72 ~~~~~L~~~g~~~i~vivGG~ 92 (132)
T TIGR00640 72 ALRKELDKLGRPDILVVVGGV 92 (132)
T ss_pred HHHHHHHhcCCCCCEEEEeCC
Confidence 5667776665 689999983
No 52
>PRK14558 pyrH uridylate kinase; Provisional
Probab=36.48 E-value=32 Score=26.50 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCceEEEcCC------hHHHHHHH
Q psy17229 22 SQIDDILQRNKVPIIVGGT------NYYIESLL 48 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGT------glYi~sLl 48 (131)
..+..++++|.+||+.|++ +=|+-+++
T Consensus 109 ~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~l 141 (231)
T PRK14558 109 DDIELYFRAGYIVIFAGGTSNPFFTTDTAAALR 141 (231)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHH
Confidence 6788888999999999954 44555544
No 53
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=36.36 E-value=35 Score=24.11 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCceEEEcCChH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTgl 42 (131)
+.+.+...++.+-|..||||.
T Consensus 48 ~~l~~~~~~~D~VittGG~g~ 68 (144)
T PF00994_consen 48 EALRRALDRADLVITTGGTGP 68 (144)
T ss_dssp HHHHHHHHTTSEEEEESSSSS
T ss_pred HHHHhhhccCCEEEEcCCcCc
Confidence 556666778899999999983
No 54
>KOG2553|consensus
Probab=34.28 E-value=28 Score=30.07 Aligned_cols=18 Identities=39% Similarity=0.741 Sum_probs=14.8
Q ss_pred CCCceEEEc--CChHHHHHHHhcccc
Q psy17229 30 RNKVPIIVG--GTNYYIESLLWTILL 53 (131)
Q Consensus 30 rgkiPIlVG--GTglYi~sLl~g~~~ 53 (131)
+-|+.|++| ||||| |+.+
T Consensus 36 KrKVail~gY~G~gY~------GmQ~ 55 (416)
T KOG2553|consen 36 KRKVAILLGYCGTGYH------GMQY 55 (416)
T ss_pred ceEEEEEEEeccCCcc------ceec
Confidence 468899998 99998 7764
No 55
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=34.22 E-value=52 Score=25.38 Aligned_cols=27 Identities=19% Similarity=0.528 Sum_probs=17.1
Q ss_pred cCHHHHHHHHHHHHHHhCC-CceEEEcCCh
Q psy17229 13 ATGGVVCRASQIDDILQRN-KVPIIVGGTN 41 (131)
Q Consensus 13 ysv~~f~~~~~I~~i~~rg-kiPIlVGGTg 41 (131)
++...+. +.++.+.+.| +++|+|||..
T Consensus 151 ~~~~~~~--~~i~~L~~~~~~~~i~vGG~~ 178 (213)
T cd02069 151 PSLDEMV--EVAEEMNRRGIKIPLLIGGAA 178 (213)
T ss_pred ccHHHHH--HHHHHHHhcCCCCeEEEEChh
Confidence 4444444 4566665544 7999999964
No 56
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=33.88 E-value=57 Score=21.76 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=18.2
Q ss_pred HHHHHHHhC-CCceEEEcCCh--HHHHHHHh
Q psy17229 22 SQIDDILQR-NKVPIIVGGTN--YYIESLLW 49 (131)
Q Consensus 22 ~~I~~i~~r-gkiPIlVGGTg--lYi~sLl~ 49 (131)
++++.+.++ .+++|++||.+ +.-+.++.
T Consensus 70 ~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~ 100 (121)
T PF02310_consen 70 RLARAIKERNPNIPIVVGGPHATADPEEILR 100 (121)
T ss_dssp HHHHHHHTTCTTSEEEEEESSSGHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCchhcChHHHhc
Confidence 556666554 36899999976 55555553
No 57
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.85 E-value=44 Score=24.20 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=13.8
Q ss_pred HHHHHHHhCC--CceEEEcCCh
Q psy17229 22 SQIDDILQRN--KVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rg--kiPIlVGGTg 41 (131)
..++.+.++| .++|+|||+.
T Consensus 71 ~~~~~l~~~gl~~~~vivGG~~ 92 (134)
T TIGR01501 71 GLRQKCDEAGLEGILLYVGGNL 92 (134)
T ss_pred HHHHHHHHCCCCCCEEEecCCc
Confidence 4566666665 5789999963
No 58
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=33.73 E-value=43 Score=26.74 Aligned_cols=12 Identities=17% Similarity=0.193 Sum_probs=9.3
Q ss_pred ceE-EEcCChHHH
Q psy17229 33 VPI-IVGGTNYYI 44 (131)
Q Consensus 33 iPI-lVGGTglYi 44 (131)
..| |+||||||=
T Consensus 22 ~~i~iI~GsGl~~ 34 (272)
T PRK08202 22 PEIGLILGSGLGA 34 (272)
T ss_pred CCEEEEeCCchhH
Confidence 444 889999994
No 59
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=33.68 E-value=37 Score=26.14 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCceEEEcCCh
Q psy17229 22 SQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTg 41 (131)
..+..++++|.+||+.|+.|
T Consensus 111 ~~l~~~l~~g~ipV~~g~~G 130 (231)
T cd04254 111 RRAIRHLEKGRVVIFAGGTG 130 (231)
T ss_pred HHHHHHHHCCCEEEEECCcC
Confidence 77888899999999998865
No 60
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=33.19 E-value=19 Score=29.31 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=14.7
Q ss_pred hCCCceEEEcCChHHHHHH
Q psy17229 29 QRNKVPIIVGGTNYYIESL 47 (131)
Q Consensus 29 ~rgkiPIlVGGTglYi~sL 47 (131)
...++|+|+|=||+.-+-+
T Consensus 90 ~~~gv~~ViGTTG~~~~~~ 108 (275)
T TIGR02130 90 GKHGIPFVMGTTGGDREAL 108 (275)
T ss_pred HHCCCCEEEcCCCCCHHHH
Confidence 3467999999999876644
No 61
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=32.59 E-value=35 Score=26.32 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCceEEEcCCh
Q psy17229 22 SQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTg 41 (131)
+.+..++++|.+||+.|+.|
T Consensus 117 ~~l~~ll~~g~ipVi~g~~~ 136 (239)
T cd04246 117 KRILEALEEGDVVVVAGFQG 136 (239)
T ss_pred HHHHHHHhcCCEEEEcCccc
Confidence 77888999999999988643
No 62
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=31.16 E-value=1.1e+02 Score=24.63 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=30.3
Q ss_pred CCCccCHHHHHHH------HHHHHHHhCC-CceEE--EcCChHHHHHHHh
Q psy17229 9 HLDTATGGVVCRA------SQIDDILQRN-KVPII--VGGTNYYIESLLW 49 (131)
Q Consensus 9 ~~e~ysv~~f~~~------~~I~~i~~rg-kiPIl--VGGTglYi~sLl~ 49 (131)
...-+|-..|.+- ++++.+.+++ .+||+ ||||.-.++.+..
T Consensus 200 ~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~~~~~~~ 249 (335)
T cd00717 200 WAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAKGAGGLLEDLAQ 249 (335)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHh
Confidence 3356788888762 7888888875 56666 9999987777776
No 63
>PRK10949 protease 4; Provisional
Probab=30.74 E-value=78 Score=28.60 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=31.1
Q ss_pred ccccCCCCCCccCHHHHHHHHHHHHHHhCCCceEEE--cCC----hHHHHHHHhccc
Q psy17229 2 VLIPQFPHLDTATGGVVCRASQIDDILQRNKVPIIV--GGT----NYYIESLLWTIL 52 (131)
Q Consensus 2 ~~~~~~~~~e~ysv~~f~~~~~I~~i~~rgkiPIlV--GGT----glYi~sLl~g~~ 52 (131)
|++.+.+|+....+.+=.. +.|..+.+.|| ||+| ||. ||||-+--..+.
T Consensus 368 VvLrInSpGGs~~ase~i~-~~i~~~r~~gK-PVvas~~~~aASggY~iA~aad~I~ 422 (618)
T PRK10949 368 IVLRVNSPGGSVTASEVIR-AELAAARAAGK-PVVVSMGGMAASGGYWISTPANYIV 422 (618)
T ss_pred EEEEecCCCCcHHHHHHHH-HHHHHHHhcCC-cEEEEECCCCccHHHHHHHhcCEEE
Confidence 4566788887654443222 55666666665 6664 777 888887776653
No 64
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=30.43 E-value=64 Score=22.76 Aligned_cols=30 Identities=20% Similarity=0.445 Sum_probs=23.9
Q ss_pred HHHHHHHhCC-CceEEEcCChHHHHHHHhcc
Q psy17229 22 SQIDDILQRN-KVPIIVGGTNYYIESLLWTI 51 (131)
Q Consensus 22 ~~I~~i~~rg-kiPIlVGGTglYi~sLl~g~ 51 (131)
+.++.+.++| ++.|+.||...|++.++..+
T Consensus 80 ~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~ 110 (177)
T TIGR01488 80 ELISWLKERGIDTVIVSGGFDFFVEPVAEKL 110 (177)
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 6677777776 57777899999999998764
No 65
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=30.00 E-value=41 Score=25.97 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCceEEEcCC
Q psy17229 22 SQIDDILQRNKVPIIVGGT 40 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGT 40 (131)
..|+.+++.|.+||+.|+.
T Consensus 117 ~~l~~ll~~~~ipVi~G~~ 135 (239)
T cd04261 117 DRIRELLEEGDVVIVAGFQ 135 (239)
T ss_pred HHHHHHHHcCCeEEEcCcc
Confidence 7788899999999998873
No 66
>PRK06153 hypothetical protein; Provisional
Probab=29.95 E-value=71 Score=27.41 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=29.9
Q ss_pred CCCCCCccCHHHHHHH-------HHHHHHHhCCCceEE-EcCChHHHHHHHhc
Q psy17229 6 QFPHLDTATGGVVCRA-------SQIDDILQRNKVPII-VGGTNYYIESLLWT 50 (131)
Q Consensus 6 ~~~~~e~ysv~~f~~~-------~~I~~i~~rgkiPIl-VGGTglYi~sLl~g 50 (131)
+++..++=||..|... ..+.+.+++-++-|| |||||-|+=-.|-.
T Consensus 145 ~~~~~~~~svf~y~dt~s~R~~i~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR 197 (393)
T PRK06153 145 VIEDAEEDSVFNYPDTASSRAGIGALSAKLEGQRIAIIGLGGTGSYILDLVAK 197 (393)
T ss_pred CCCCcccCCceehhhhhccccChHHHHHHHhhCcEEEEcCCccHHHHHHHHHH
Confidence 4455556677777652 334666666676665 69999998777744
No 67
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=28.80 E-value=40 Score=22.11 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=18.8
Q ss_pred CCCCCccCHHHHHHH-HHHHHHHh-CCCceEEEcCCh
Q psy17229 7 FPHLDTATGGVVCRA-SQIDDILQ-RNKVPIIVGGTN 41 (131)
Q Consensus 7 ~~~~e~ysv~~f~~~-~~I~~i~~-rgkiPIlVGGTg 41 (131)
.+..+..|.....+. ..+..+.. ...+||++-||.
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK 117 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNK 117 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEec
Confidence 344443443333332 45666654 455999888874
No 68
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=28.75 E-value=74 Score=26.77 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=21.0
Q ss_pred HHHHHHHhCCC-ceE--EEcCChHHHHHHH
Q psy17229 22 SQIDDILQRNK-VPI--IVGGTNYYIESLL 48 (131)
Q Consensus 22 ~~I~~i~~rgk-iPI--lVGGTglYi~sLl 48 (131)
++++.+.+.+. +|| +|+|++.|+..+-
T Consensus 231 ~i~~~vk~~~~~~pii~f~~ga~~~l~~m~ 260 (352)
T COG0407 231 RIVREVKEVKGGVPVIHFCKGAGHLLEDMA 260 (352)
T ss_pred HHHHHHHHhCCCCcEEEECCCcHHHHHHHH
Confidence 67777776555 787 5799999999775
No 69
>KOG1276|consensus
Probab=28.59 E-value=49 Score=29.06 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=25.3
Q ss_pred ccCHHHHHHHHHHHHHHhCCC-ceEEEcCChH
Q psy17229 12 TATGGVVCRASQIDDILQRNK-VPIIVGGTNY 42 (131)
Q Consensus 12 ~ysv~~f~~~~~I~~i~~rgk-iPIlVGGTgl 42 (131)
.|+|+.|...+.++....... .|+.+||.+|
T Consensus 439 qy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y 470 (491)
T KOG1276|consen 439 QYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHY 470 (491)
T ss_pred ceecchHHHHHHHHHHHHhCCCCceEeecccc
Confidence 489999988877777776666 9999999765
No 70
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=28.43 E-value=66 Score=24.14 Aligned_cols=30 Identities=17% Similarity=0.427 Sum_probs=23.9
Q ss_pred HHHHHHHhCC-CceEEEcCChHHHHHHHhcc
Q psy17229 22 SQIDDILQRN-KVPIIVGGTNYYIESLLWTI 51 (131)
Q Consensus 22 ~~I~~i~~rg-kiPIlVGGTglYi~sLl~g~ 51 (131)
+.++.+.++| ++-|+.||...|++.++..+
T Consensus 81 e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 81 EFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred HHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 6788877766 45677799999999999765
No 71
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=28.21 E-value=2.9e+02 Score=21.62 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=19.5
Q ss_pred CCCceEEEcCChHHHHHHHhccc
Q psy17229 30 RNKVPIIVGGTNYYIESLLWTIL 52 (131)
Q Consensus 30 rgkiPIlVGGTglYi~sLl~g~~ 52 (131)
++++.|+.|..++++.++..|..
T Consensus 177 ~~~~~v~~G~d~~~~~~~~~G~~ 199 (284)
T cd00950 177 PDDFAVLSGDDALTLPFLALGGV 199 (284)
T ss_pred CCCeEEEeCChHhHHHHHHCCCC
Confidence 46899999999999999988843
No 72
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=27.95 E-value=43 Score=26.72 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCceEEEcCCh
Q psy17229 22 SQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTg 41 (131)
..+..+++.|.+||+.|+++
T Consensus 126 ~~l~~lL~~g~vPVi~g~~~ 145 (262)
T cd04255 126 LQLPTFLKAGRAPVISGMPP 145 (262)
T ss_pred HHHHHHHHCCCeEEEeCCcC
Confidence 35788899999999999964
No 73
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=27.84 E-value=95 Score=25.66 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=28.6
Q ss_pred CccCHHHHHHH--------HHHHHHHhCCCceEEEcCChH----HHHHHHhcc
Q psy17229 11 DTATGGVVCRA--------SQIDDILQRNKVPIIVGGTNY----YIESLLWTI 51 (131)
Q Consensus 11 e~ysv~~f~~~--------~~I~~i~~rgkiPIlVGGTgl----Yi~sLl~g~ 51 (131)
..+|..+|.+. +.+..+...++.-+|+||||- .++||+.-+
T Consensus 116 ~~~tl~~lv~~g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 116 RLIPLDDYVTSKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCCCHHHHHHcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45666666652 556677777777789999874 777877543
No 74
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=27.76 E-value=52 Score=27.33 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCceEEEcCCh
Q psy17229 22 SQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTg 41 (131)
+.|+.+.+.|.++|.+||-|
T Consensus 175 ~~Ik~L~~~g~vVI~~GGGG 194 (312)
T COG0549 175 EAIKALLESGHVVIAAGGGG 194 (312)
T ss_pred HHHHHHHhCCCEEEEeCCCC
Confidence 78999999999999999965
No 75
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=27.73 E-value=40 Score=20.53 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=19.0
Q ss_pred HHhcCHHHHHHHHHhcChhhhhhc
Q psy17229 86 LWKLDKEEKDDLFKVHDTDKIDEL 109 (131)
Q Consensus 86 l~~~g~~~l~~~L~~~DP~~A~~i 109 (131)
|...+.++|.++|..+||++-..|
T Consensus 5 Lk~ls~~eL~~rl~~LD~~ME~Ei 28 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDPEMEQEI 28 (49)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCHHHHHHH
Confidence 445677889999999999998877
No 76
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=27.34 E-value=94 Score=16.93 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCceEE-EcCChHH
Q psy17229 22 SQIDDILQRNKVPII-VGGTNYY 43 (131)
Q Consensus 22 ~~I~~i~~rgkiPIl-VGGTglY 43 (131)
..|..+.++|++|.. +||.-+|
T Consensus 16 ~ti~~~~~~g~i~~~~~g~~~~~ 38 (49)
T TIGR01764 16 DTVYRLIHEGELPAYRVGRHYRI 38 (49)
T ss_pred HHHHHHHHcCCCCeEEeCCeEEE
Confidence 778888899998864 5765444
No 77
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=27.30 E-value=30 Score=21.63 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=13.5
Q ss_pred HHHHHHhCCCceEEE-cCC
Q psy17229 23 QIDDILQRNKVPIIV-GGT 40 (131)
Q Consensus 23 ~I~~i~~rgkiPIlV-GGT 40 (131)
...++.-.|++|+++ ||+
T Consensus 42 ~~~~inP~g~vP~L~~~g~ 60 (73)
T cd03052 42 WFMRLNPTGEVPVLIHGDN 60 (73)
T ss_pred HHHHhCcCCCCCEEEECCE
Confidence 356778899999988 443
No 78
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=26.97 E-value=48 Score=24.59 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCceEEEcCChH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTgl 42 (131)
+.+.+..++..+-|++||||.
T Consensus 50 ~~l~~~~~~~dlVIttGG~G~ 70 (170)
T cd00885 50 EALRRASERADLVITTGGLGP 70 (170)
T ss_pred HHHHHHHhCCCEEEECCCCCC
Confidence 556666677889999999874
No 79
>COG0010 SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
Probab=26.96 E-value=1.2e+02 Score=24.60 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=24.7
Q ss_pred CHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229 14 TGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWT 50 (131)
Q Consensus 14 sv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g 50 (131)
+...++.. ..+.++..+++.||+.||=+.=--+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~pi~lGGDHsit~~~~~a 121 (305)
T COG0010 83 DLEDAVDAIEEAVAELLSAGAFPIVLGGDHSITLGTVRA 121 (305)
T ss_pred cHHHHHHHHHHHHHHHHhcCCeeEEECCcchhhHHHHHH
Confidence 34444443 67778888999999999966544444433
No 80
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=26.85 E-value=18 Score=30.12 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.3
Q ss_pred EEcCChHHHHHHHhc
Q psy17229 36 IVGGTNYYIESLLWT 50 (131)
Q Consensus 36 lVGGTglYi~sLl~g 50 (131)
||+|||||..++.--
T Consensus 91 IV~~TGfy~~~~~p~ 105 (316)
T COG1735 91 IVAATGFYKAAFHPE 105 (316)
T ss_pred EEEeccccccccchh
Confidence 788999999887653
No 81
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=26.50 E-value=82 Score=26.71 Aligned_cols=43 Identities=16% Similarity=-0.069 Sum_probs=29.9
Q ss_pred CCccCHHHHHHH--------HHHHHHHhCCCceEEEcCChHHHHHHHhccc
Q psy17229 10 LDTATGGVVCRA--------SQIDDILQRNKVPIIVGGTNYYIESLLWTIL 52 (131)
Q Consensus 10 ~e~ysv~~f~~~--------~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~ 52 (131)
...+++.+|... +.+..+......-+|+||||--=..+++-+.
T Consensus 144 k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~ 194 (355)
T COG4962 144 KIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALS 194 (355)
T ss_pred cccccHHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHH
Confidence 355666666652 4555555556677899999988888887765
No 82
>KOG0867|consensus
Probab=26.05 E-value=20 Score=27.71 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=15.2
Q ss_pred HHHHHhCCCceEEEcCChHH
Q psy17229 24 IDDILQRNKVPIIVGGTNYY 43 (131)
Q Consensus 24 I~~i~~rgkiPIlVGGTglY 43 (131)
.-.+.-.|++|.+++| |++
T Consensus 45 fl~~nP~~kVP~l~d~-~~~ 63 (226)
T KOG0867|consen 45 FLKLNPLGKVPALEDG-GLT 63 (226)
T ss_pred HHhcCcCCCCCeEecC-CeE
Confidence 3467788999999999 654
No 83
>KOG3985|consensus
Probab=25.87 E-value=25 Score=28.44 Aligned_cols=14 Identities=36% Similarity=0.684 Sum_probs=10.3
Q ss_pred EEcCChHHHHHHHh
Q psy17229 36 IVGGTNYYIESLLW 49 (131)
Q Consensus 36 lVGGTglYi~sLl~ 49 (131)
|.||||||==-+|.
T Consensus 14 IIGGsGl~dp~ile 27 (283)
T KOG3985|consen 14 IIGGSGLYDPDILE 27 (283)
T ss_pred EeccCCCCCchhhh
Confidence 66999999555554
No 84
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=25.56 E-value=23 Score=25.77 Aligned_cols=10 Identities=40% Similarity=0.727 Sum_probs=8.1
Q ss_pred EEEcCChHHH
Q psy17229 35 IIVGGTNYYI 44 (131)
Q Consensus 35 IlVGGTglYi 44 (131)
-||||||-+-
T Consensus 106 ~VVGGTG~Fr 115 (144)
T PF03018_consen 106 AVVGGTGEFR 115 (144)
T ss_pred eEecCCCeEc
Confidence 3899999873
No 85
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=25.48 E-value=1.3e+02 Score=24.18 Aligned_cols=38 Identities=8% Similarity=-0.003 Sum_probs=29.3
Q ss_pred ccCHHHHHHH------HHHHHHHhCCCceEE--EcCChHHHHHHHh
Q psy17229 12 TATGGVVCRA------SQIDDILQRNKVPII--VGGTNYYIESLLW 49 (131)
Q Consensus 12 ~ysv~~f~~~------~~I~~i~~rgkiPIl--VGGTglYi~sLl~ 49 (131)
-.|..+|.+. ++++.+++.|..|++ ||+|.-.+..+..
T Consensus 208 ~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~CG~~~~~~~~l~~ 253 (340)
T TIGR01463 208 LISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGFTQPILRDIAN 253 (340)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCCchhhHHHHHH
Confidence 4577777652 778888888888887 8999877787765
No 86
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=25.46 E-value=40 Score=27.75 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=14.3
Q ss_pred HHHHHHHhCCC--ceEEEcCCh
Q psy17229 22 SQIDDILQRNK--VPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgk--iPIlVGGTg 41 (131)
++|+.++++|+ +-||.=||.
T Consensus 99 elI~~~k~~g~~~tflvTNgsl 120 (296)
T COG0731 99 ELIEEIKKRGKKTTFLVTNGSL 120 (296)
T ss_pred HHHHHHHhcCCceEEEEeCCCh
Confidence 78888999993 445556665
No 87
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=25.40 E-value=57 Score=22.85 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=15.9
Q ss_pred HHHHHHHhCCCceEEEcCChH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTgl 42 (131)
+.|++..++..+-|..||||.
T Consensus 50 ~~i~~~~~~~DlvittGG~g~ 70 (133)
T cd00758 50 AALIEASREADLVLTTGGTGV 70 (133)
T ss_pred HHHHHHHhcCCEEEECCCCCC
Confidence 456666667889999999974
No 88
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=25.37 E-value=1.3e+02 Score=25.18 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=16.7
Q ss_pred CCceEEEcCChHHHHHHHhccc
Q psy17229 31 NKVPIIVGGTNYYIESLLWTIL 52 (131)
Q Consensus 31 gkiPIlVGGTglYi~sLl~g~~ 52 (131)
..-+|..||.. |.++++....
T Consensus 72 ~~~~i~~~~~~-~~~~lL~kal 92 (339)
T COG1536 72 EQAGINKGADE-YARELLEKAL 92 (339)
T ss_pred hccccccChHH-HHHHHHHHhC
Confidence 34468889999 9999998854
No 89
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=25.20 E-value=57 Score=27.52 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCceEEEcCChH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTgl 42 (131)
+.|..+.++| .||||||.+.
T Consensus 57 ~~i~~~~~~~-~~vvvgGc~a 76 (430)
T TIGR01125 57 DTIGELADAG-KKVIVTGCLV 76 (430)
T ss_pred HHHHHHHhcC-CCEEEECCcc
Confidence 6788887775 4899999863
No 90
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=24.73 E-value=84 Score=24.69 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=23.4
Q ss_pred cCHHHHHHHHHHHHHHhCC-CceEEEc-------CChHHHHHHHhccc
Q psy17229 13 ATGGVVCRASQIDDILQRN-KVPIIVG-------GTNYYIESLLWTIL 52 (131)
Q Consensus 13 ysv~~f~~~~~I~~i~~rg-kiPIlVG-------GTglYi~sLl~g~~ 52 (131)
|++..|. +.++.+.++| .+||++| ++-.|+...+ |..
T Consensus 170 fd~~~~~--~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~-Gv~ 214 (274)
T cd00537 170 FDNDAFL--RFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLC-GVE 214 (274)
T ss_pred ccHHHHH--HHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhh-CCC
Confidence 4444444 4566777777 8999999 4445555555 653
No 91
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=24.70 E-value=1.1e+02 Score=21.51 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHhcChhhh
Q psy17229 80 RDVLEGLWKLDKEEKDDLFKVHDTDKI 106 (131)
Q Consensus 80 ~~~~~~l~~~g~~~l~~~L~~~DP~~A 106 (131)
++.++.+++...+++-++|.++.|+--
T Consensus 69 k~Ye~a~~~~~~~~lqkRle~l~~eE~ 95 (104)
T PF11460_consen 69 KDYEEAVDQLTNEELQKRLEELSPEEL 95 (104)
T ss_pred HHHHHHHHHHhHHHHHHHHHhCCHHHH
Confidence 444555555555666666666666543
No 92
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=24.50 E-value=48 Score=26.98 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=10.3
Q ss_pred CCceEEEcCChHH
Q psy17229 31 NKVPIIVGGTNYY 43 (131)
Q Consensus 31 gkiPIlVGGTglY 43 (131)
..+|+|+|=|||=
T Consensus 92 ~~~~lVIGTTGf~ 104 (266)
T COG0289 92 HGKPLVIGTTGFT 104 (266)
T ss_pred cCCCeEEECCCCC
Confidence 4588999999874
No 93
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.40 E-value=62 Score=27.10 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=13.9
Q ss_pred HHHHHH-HhCCCceEEEcCChH
Q psy17229 22 SQIDDI-LQRNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i-~~rgkiPIlVGGTgl 42 (131)
+..+++ .++..+.|+||+||-
T Consensus 117 evlk~la~~kRGLviiVGaTGS 138 (375)
T COG5008 117 EVLKDLALAKRGLVIIVGATGS 138 (375)
T ss_pred HHHHHhhcccCceEEEECCCCC
Confidence 334444 445668899999985
No 94
>PRK14557 pyrH uridylate kinase; Provisional
Probab=24.21 E-value=67 Score=25.36 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=13.5
Q ss_pred HHHHhCCCceEEEcCChH
Q psy17229 25 DDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 25 ~~i~~rgkiPIlVGGTgl 42 (131)
.+.+++|++||+.||+|.
T Consensus 119 ~~~l~~g~VvV~~G~~g~ 136 (247)
T PRK14557 119 VHHLDNGYIVIFGGGNGQ 136 (247)
T ss_pred HHHHhCCCEEEEECCcCC
Confidence 333678999999997664
No 95
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=24.04 E-value=62 Score=20.22 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=12.4
Q ss_pred HHHHHhC-CCceEEEcC
Q psy17229 24 IDDILQR-NKVPIIVGG 39 (131)
Q Consensus 24 I~~i~~r-gkiPIlVGG 39 (131)
...+... |++|.++.|
T Consensus 43 ~~~~~p~~g~vP~l~~~ 59 (76)
T PF02798_consen 43 FLAINPMFGKVPALEDG 59 (76)
T ss_dssp HHHHTTTSSSSSEEEET
T ss_pred hhhcccccceeeEEEEC
Confidence 4455566 999999988
No 96
>PF15448 NTS_2: N-terminal segments of P. falciparum erythrocyte membrane protein
Probab=23.92 E-value=37 Score=20.47 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=14.7
Q ss_pred HHHHHHHhCCCceE---EEcCChHHHH
Q psy17229 22 SQIDDILQRNKVPI---IVGGTNYYIE 45 (131)
Q Consensus 22 ~~I~~i~~rgkiPI---lVGGTglYi~ 45 (131)
..|++.++..---| =.||-|+|++
T Consensus 22 s~idq~lkadpsev~yy~sggdg~ylk 48 (51)
T PF15448_consen 22 SKIDQSLKADPSEVQYYRSGGDGDYLK 48 (51)
T ss_pred hhHHHHhcCChhHhhhhccCCchhHhh
Confidence 45666655433222 3599999986
No 97
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=23.91 E-value=39 Score=21.96 Aligned_cols=8 Identities=50% Similarity=0.929 Sum_probs=6.7
Q ss_pred EEEcCChH
Q psy17229 35 IIVGGTNY 42 (131)
Q Consensus 35 IlVGGTgl 42 (131)
+|.||||.
T Consensus 1 lIagGtGI 8 (109)
T PF00175_consen 1 LIAGGTGI 8 (109)
T ss_dssp EEEEGGGG
T ss_pred CeecceeH
Confidence 58899996
No 98
>PRK06635 aspartate kinase; Reviewed
Probab=23.85 E-value=54 Score=27.28 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCceEEEcC
Q psy17229 22 SQIDDILQRNKVPIIVGG 39 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGG 39 (131)
+.+..++++|.+||+.|+
T Consensus 119 ~~l~~~l~~~~ipVi~g~ 136 (404)
T PRK06635 119 SRIREALDEGDVVVVAGF 136 (404)
T ss_pred HHHHHHHhCCCEEEecCc
Confidence 678888899999999884
No 99
>PRK05473 hypothetical protein; Provisional
Probab=23.57 E-value=1.5e+02 Score=20.05 Aligned_cols=40 Identities=20% Similarity=0.108 Sum_probs=29.8
Q ss_pred HHHHHHHhcC---HHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHH
Q psy17229 81 DVLEGLWKLD---KEEKDDLFKVHDTDKIDELEGENDKRDNKREDL 123 (131)
Q Consensus 81 ~~~~~l~~~g---~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALe 123 (131)
.+.+.|+++| ...+--.|..-||.+-- ..||.|-++|-+|
T Consensus 26 ~Vy~AL~EKGYNPinQiVGYllSGDPaYIt---sh~nAR~lIrkiE 68 (86)
T PRK05473 26 TVYDALEEKGYNPINQIVGYLLSGDPAYIP---RHNDARNLIRKLE 68 (86)
T ss_pred HHHHHHHHcCCChHHHHHhhhccCCCCccC---CcccHHHHHHHHh
Confidence 3445667766 55777889999998864 4589999999875
No 100
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=23.49 E-value=1.3e+02 Score=21.39 Aligned_cols=21 Identities=10% Similarity=-0.070 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHh
Q psy17229 80 RDVLEGLWKLDKEEKDDLFKV 100 (131)
Q Consensus 80 ~~~~~~l~~~g~~~l~~~L~~ 100 (131)
.++.+.|...|.+.+.+++++
T Consensus 104 ~~~~~kLk~AGidkV~~E~Qk 124 (134)
T PF12010_consen 104 PEFNEKLKAAGIDKVIAELQK 124 (134)
T ss_pred HHHHHHHHHhChHHHHHHHHH
Confidence 566778888888877766643
No 101
>PF12728 HTH_17: Helix-turn-helix domain
Probab=23.36 E-value=1.2e+02 Score=17.30 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCc-eEEEcCChHHHHHHH
Q psy17229 22 SQIDDILQRNKV-PIIVGGTNYYIESLL 48 (131)
Q Consensus 22 ~~I~~i~~rgki-PIlVGGTglYi~sLl 48 (131)
+.+..+..+|++ |+-+|+.-+|-++=+
T Consensus 16 ~tv~~~~~~g~i~~~~~g~~~~~~~~~l 43 (51)
T PF12728_consen 16 STVYRWIRQGKIPPFKIGRKWRIPKSDL 43 (51)
T ss_pred HHHHHHHHcCCCCeEEeCCEEEEeHHHH
Confidence 778888899998 455666555544443
No 102
>smart00477 NUC DNA/RNA non-specific endonuclease. prokaryotic and eukaryotic double- and single-stranded DNA and RNA endonucleases also present in phosphodiesterases
Probab=23.24 E-value=1.2e+02 Score=22.91 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=29.1
Q ss_pred cccCCCCCCccCHHHHHHH-HHHHHHHh--CCCceEEEcCC
Q psy17229 3 LIPQFPHLDTATGGVVCRA-SQIDDILQ--RNKVPIIVGGT 40 (131)
Q Consensus 3 ~~~~~~~~e~ysv~~f~~~-~~I~~i~~--rgkiPIlVGGT 40 (131)
+.++.|-...||-+.|.++ ..+.++.. .+.+=|+.|+.
T Consensus 84 ~sNi~PQ~~~fN~g~W~~lE~~vr~~~~~~~~~v~V~tG~~ 124 (209)
T smart00477 84 LSNIVPQYPDFNRGAWAYLEDYLRKLTASEYNGVYVVSGPL 124 (209)
T ss_pred hhhcccchhhhhhHHHHHHHHHHHHHHHhhCCCEEEEeCcc
Confidence 4566777778999999997 67777765 57788888874
No 103
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=23.22 E-value=36 Score=23.84 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=12.8
Q ss_pred CceEEEcCChH-----HHHHHHhc
Q psy17229 32 KVPIIVGGTNY-----YIESLLWT 50 (131)
Q Consensus 32 kiPIlVGGTgl-----Yi~sLl~g 50 (131)
.+-+|+||||. +++.|+..
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~ 26 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQR 26 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred EEEEEecCcCHHHHHHHHHHHHHh
Confidence 45689999996 44555444
No 104
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=23.16 E-value=49 Score=21.24 Aligned_cols=14 Identities=29% Similarity=0.695 Sum_probs=11.8
Q ss_pred CCCceEEEcCChHH
Q psy17229 30 RNKVPIIVGGTNYY 43 (131)
Q Consensus 30 rgkiPIlVGGTglY 43 (131)
+|++|=|.|||-|-
T Consensus 15 a~~lP~IIGGSDLi 28 (65)
T PF08599_consen 15 AGGLPHIIGGSDLI 28 (65)
T ss_pred CCCCCeeecchhhh
Confidence 57899999998764
No 105
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=23.00 E-value=76 Score=23.38 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=14.0
Q ss_pred hCCCceEEEcCChHHHHH
Q psy17229 29 QRNKVPIIVGGTNYYIES 46 (131)
Q Consensus 29 ~rgkiPIlVGGTglYi~s 46 (131)
...+..++.|||.+.+.-
T Consensus 20 ~~~~a~~vaGgT~l~~~~ 37 (171)
T PF00941_consen 20 KGPDARIVAGGTDLGVQM 37 (171)
T ss_dssp HGTTEEEESS-TTHHHHH
T ss_pred cCCCCEEEeCCCccchhc
Confidence 578899999999998654
No 106
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=22.54 E-value=72 Score=22.18 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=15.2
Q ss_pred HHHHHHHhCCCceEEEcCCh
Q psy17229 22 SQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTg 41 (131)
+.+++..++..+-|..||||
T Consensus 49 ~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 49 EALREALERADLVITTGGTG 68 (135)
T ss_pred HHHHHHHhCCCEEEEcCCCC
Confidence 45555566778999999998
No 107
>KOG1903|consensus
Probab=22.34 E-value=67 Score=24.70 Aligned_cols=37 Identities=16% Similarity=0.354 Sum_probs=26.2
Q ss_pred CCCCCCccC------HHHHHH-H----HHHHHHHhCCCceEEEcCChH
Q psy17229 6 QFPHLDTAT------GGVVCR-A----SQIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 6 ~~~~~e~ys------v~~f~~-~----~~I~~i~~rgkiPIlVGGTgl 42 (131)
.+|++|.++ +.+|-. . ..|.+.-.+-..|+.+||+-|
T Consensus 50 ~LPpgEn~nDW~AVHvVDFFNRiNLiYGTise~Cte~sCP~MsGG~rY 97 (217)
T KOG1903|consen 50 RLPPGENLNDWLAVHVVDFFNRINLIYGTISEFCTETSCPVMSGGPRY 97 (217)
T ss_pred cCCCCCCccceeeeehhhhhhhhHhhhhhHhhhccccCCCcccCCCcc
Confidence 367777664 444443 2 567777778889999999976
No 108
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=22.27 E-value=1.1e+02 Score=22.10 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCceEEEcCChHHHHHHH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNYYIESLL 48 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTglYi~sLl 48 (131)
++++.+.+.++--.|+||..+|-+.|=
T Consensus 82 ~~v~~lk~~~~~I~v~GG~~l~~~~l~ 108 (158)
T cd00209 82 EALELAENTVEEIFVIGGAEIYKQALP 108 (158)
T ss_pred HHHHHHhcCCCeEEEECcHHHHHHHHh
Confidence 667777645554446698888865554
No 109
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=22.18 E-value=1.4e+02 Score=24.18 Aligned_cols=42 Identities=24% Similarity=0.247 Sum_probs=27.9
Q ss_pred CCccCHHHHHHH--------HHHHHHHhCCCceEEEcCChH----HHHHHHhcc
Q psy17229 10 LDTATGGVVCRA--------SQIDDILQRNKVPIIVGGTNY----YIESLLWTI 51 (131)
Q Consensus 10 ~e~ysv~~f~~~--------~~I~~i~~rgkiPIlVGGTgl----Yi~sLl~g~ 51 (131)
...+|..++.+. +.+..+.+.++.-+|+|+||- .++||+.-+
T Consensus 103 ~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 103 VAVFTLDDYVEAGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCCCCHHHHHhcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 345677776531 456666667777889998875 667776443
No 110
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=21.92 E-value=72 Score=22.73 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=16.1
Q ss_pred HHHHHHHhCCCceEEEcCChH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTgl 42 (131)
+.|++..++..+-|+.||||.
T Consensus 58 ~~l~~~~~~~DliIttGG~g~ 78 (144)
T TIGR00177 58 EILRKAVDEADVVLTTGGTGV 78 (144)
T ss_pred HHHHHHHhCCCEEEECCCCCC
Confidence 455666667889999999985
No 111
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=21.74 E-value=55 Score=25.51 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=13.4
Q ss_pred CCCceEEEcCChHHHHHHH
Q psy17229 30 RNKVPIIVGGTNYYIESLL 48 (131)
Q Consensus 30 rgkiPIlVGGTglYi~sLl 48 (131)
+|+.-+|.|||||==.+|+
T Consensus 3 ~~~~ilVtGatGfIG~~l~ 21 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLV 21 (322)
T ss_pred CCCEEEEECChHHHHHHHH
Confidence 4677789999987644444
No 112
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=21.72 E-value=83 Score=24.26 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCceEEEcCCh
Q psy17229 22 SQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTg 41 (131)
+.+++++++|.+||+.|+.|
T Consensus 112 ~~i~~ll~~g~VpV~~g~~g 131 (233)
T TIGR02075 112 RKAIKHLEKGKVVIFSGGTG 131 (233)
T ss_pred HHHHHHHHCCCEEEEECCCC
Confidence 66777889999999988743
No 113
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=21.63 E-value=1.1e+02 Score=23.53 Aligned_cols=18 Identities=28% Similarity=0.684 Sum_probs=15.4
Q ss_pred HHHHHHHhC-CCceEEEcC
Q psy17229 22 SQIDDILQR-NKVPIIVGG 39 (131)
Q Consensus 22 ~~I~~i~~r-gkiPIlVGG 39 (131)
+.+..++++ |.+||+.|.
T Consensus 103 ~~l~~~l~~~~~vpVv~g~ 121 (227)
T cd04234 103 ERLKELLAEIGKVPVVTGF 121 (227)
T ss_pred HHHHHHHhhCCCEEEecCc
Confidence 778888999 999999773
No 114
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=21.38 E-value=1.4e+02 Score=19.87 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=30.3
Q ss_pred HHHHHHHHhcC---HHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHH
Q psy17229 80 RDVLEGLWKLD---KEEKDDLFKVHDTDKIDELEGENDKRDNKREDL 123 (131)
Q Consensus 80 ~~~~~~l~~~g---~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALe 123 (131)
..+.+.|++.| ...+--.|..-||.+-. ..||.|.++|-+|
T Consensus 22 ~~Vy~AL~EKGYnPinQivGYllSGDPaYIt---sh~nAR~lIr~~e 65 (79)
T PF06135_consen 22 KQVYAALEEKGYNPINQIVGYLLSGDPAYIT---SHNNARNLIRKIE 65 (79)
T ss_pred HHHHHHHHHcCCChHHHHHhheecCCCcccc---CcccHHHHHHHHh
Confidence 34456677776 55677789999998863 4588999998875
No 115
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.29 E-value=58 Score=22.26 Aligned_cols=23 Identities=9% Similarity=-0.113 Sum_probs=19.1
Q ss_pred HhcChhhhhhcCCCCcHHHHHHHH
Q psy17229 99 KVHDTDKIDELEGENDKRDNKRED 122 (131)
Q Consensus 99 ~~~DP~~A~~i~~~nd~rRv~RAL 122 (131)
-++||++|+.+ ..+=..+.+||+
T Consensus 61 GEi~~E~A~~L-~~~~~~kgvrs~ 83 (98)
T COG4003 61 GEITPEMAKAL-RVTLVHKGVRSF 83 (98)
T ss_pred CCCCHHHHHHH-HhhHHHHHHHHh
Confidence 47899999999 777777888886
No 116
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=21.25 E-value=1.9e+02 Score=18.68 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhh
Q psy17229 90 DKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHN 128 (131)
Q Consensus 90 g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~ 128 (131)
..+.+.+.++.+|+..-..| ...+..+++..+-++|++
T Consensus 50 s~~~v~~i~~~~D~d~~G~I-~f~eF~~l~~~~~~~~~~ 87 (92)
T cd05025 50 DADAVDKIMKELDENGDGEV-DFQEFVVLVAALTVACNN 87 (92)
T ss_pred CHHHHHHHHHHHCCCCCCcC-cHHHHHHHHHHHHHHHHH
Confidence 45678888999999888889 989999999999887764
No 117
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=21.11 E-value=58 Score=25.57 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=15.3
Q ss_pred hCCCceEEEcCChHHHHHHHh
Q psy17229 29 QRNKVPIIVGGTNYYIESLLW 49 (131)
Q Consensus 29 ~rgkiPIlVGGTglYi~sLl~ 49 (131)
.+||..+|.||||+==.+|..
T Consensus 3 ~~~k~vlVtG~~G~IG~~l~~ 23 (325)
T PLN02989 3 DGGKVVCVTGASGYIASWIVK 23 (325)
T ss_pred CCCCEEEEECCchHHHHHHHH
Confidence 357889999999985444443
No 118
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=20.96 E-value=35 Score=27.41 Aligned_cols=9 Identities=44% Similarity=0.970 Sum_probs=7.7
Q ss_pred EEcCChHHH
Q psy17229 36 IVGGTNYYI 44 (131)
Q Consensus 36 lVGGTglYi 44 (131)
|+||||+|=
T Consensus 12 iIgGSGl~~ 20 (267)
T PRK08564 12 IIGGSGLYD 20 (267)
T ss_pred EEecCCCCC
Confidence 789999975
No 119
>PRK08841 aspartate kinase; Validated
Probab=20.37 E-value=74 Score=26.86 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCceEEEcCCh
Q psy17229 22 SQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTg 41 (131)
..|..++..|.+||+.|..|
T Consensus 119 ~~i~~ll~~~~vpVv~Gf~g 138 (392)
T PRK08841 119 STITELLEQDQIVIVAGFQG 138 (392)
T ss_pred HHHHHHHhCCCEEEEeCCcc
Confidence 67888889999999988543
No 120
>PLN02996 fatty acyl-CoA reductase
Probab=20.28 E-value=59 Score=28.10 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=18.3
Q ss_pred CCCceEEEcCChHHHHHHHhccc
Q psy17229 30 RNKVPIIVGGTNYYIESLLWTIL 52 (131)
Q Consensus 30 rgkiPIlVGGTglYi~sLl~g~~ 52 (131)
+||.-+|.|||||==..|+..+.
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL 32 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKIL 32 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHH
Confidence 68888999999997777776643
No 121
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=20.21 E-value=59 Score=26.02 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=12.9
Q ss_pred CCCceEEEcCChHHHHHH
Q psy17229 30 RNKVPIIVGGTNYYIESL 47 (131)
Q Consensus 30 rgkiPIlVGGTglYi~sL 47 (131)
.||..+|.||||+==.++
T Consensus 3 ~~k~ilItGatG~IG~~l 20 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWL 20 (349)
T ss_pred CCCEEEEECCCChhHHHH
Confidence 478889999999733333
No 122
>PRK09411 carbamate kinase; Reviewed
Probab=20.18 E-value=80 Score=26.04 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCceEEEcCCh
Q psy17229 22 SQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTg 41 (131)
+.|+.++++|-+||.+||=|
T Consensus 167 ~~I~~Ll~~G~IVI~~gGGG 186 (297)
T PRK09411 167 EAIELLLKEGHVVICSGGGG 186 (297)
T ss_pred HHHHHHHHCCCEEEecCCCC
Confidence 78999999999999988743
No 123
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=20.16 E-value=28 Score=26.45 Aligned_cols=18 Identities=39% Similarity=0.756 Sum_probs=13.8
Q ss_pred HHHHHHHhCCCceEEEcC
Q psy17229 22 SQIDDILQRNKVPIIVGG 39 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGG 39 (131)
+.|+.+.++-.+|||.||
T Consensus 130 ~vi~~i~~~~~~PiIAGG 147 (175)
T PF04309_consen 130 KVIKKIREETNIPIIAGG 147 (175)
T ss_dssp HHHCCCCCCCSS-EEEES
T ss_pred HHHHHHHHhcCCCEEeec
Confidence 456777777889999999
No 124
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=20.08 E-value=35 Score=15.62 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=11.4
Q ss_pred HHHhcChhhhhhcCCCCcHHHHHHH
Q psy17229 97 LFKVHDTDKIDELEGENDKRDNKRE 121 (131)
Q Consensus 97 ~L~~~DP~~A~~i~~~nd~rRv~RA 121 (131)
.++..|+..-..+ ..++.+.++++
T Consensus 5 ~f~~~d~~~~g~i-~~~e~~~~~~~ 28 (29)
T smart00054 5 AFRLFDKDGDGKI-DFEEFKDLLKA 28 (29)
T ss_pred HHHHHCCCCCCcE-eHHHHHHHHHh
Confidence 3444455444445 55555555443
No 125
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.07 E-value=1.7e+02 Score=23.83 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=21.6
Q ss_pred CHHHHHHH-HHHHHHHhCCCceEEEcCC-hHHHHHHHhc
Q psy17229 14 TGGVVCRA-SQIDDILQRNKVPIIVGGT-NYYIESLLWT 50 (131)
Q Consensus 14 sv~~f~~~-~~I~~i~~rgkiPIlVGGT-glYi~sLl~g 50 (131)
+...+.+. ..++. =||.||.||.+ |+++..++..
T Consensus 157 ~~e~~~~~~~ll~~---lGk~~v~v~d~~Gfi~nri~~~ 192 (314)
T PRK08269 157 DPAVVDRLAALLER---IGKVPVVCGPSPGYIVPRIQAL 192 (314)
T ss_pred CHHHHHHHHHHHHH---cCCcEEEecCCCCcchHHHHHH
Confidence 34444443 34443 49999999986 7777666654
No 126
>PRK01215 competence damage-inducible protein A; Provisional
Probab=20.01 E-value=89 Score=25.00 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCceEEEcCChH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTgl 42 (131)
+.+++..++..+-|+.||+|.
T Consensus 54 ~~l~~a~~~~DlVIttGG~g~ 74 (264)
T PRK01215 54 SAFREAIDRADVVVSTGGLGP 74 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCcC
Confidence 667777778899999999985
Done!