Query psy17229
Match_columns 131
No_of_seqs 180 out of 1087
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 16:37:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3foz_A TRNA delta(2)-isopenten 100.0 1.5E-32 5.2E-37 222.7 12.0 110 3-131 69-180 (316)
2 3exa_A TRNA delta(2)-isopenten 100.0 3.4E-32 1.2E-36 221.1 13.3 111 3-131 62-174 (322)
3 3eph_A TRNA isopentenyltransfe 100.0 1.6E-29 5.4E-34 211.0 8.7 110 3-131 61-172 (409)
4 3crm_A TRNA delta(2)-isopenten 99.9 8.4E-28 2.9E-32 195.3 6.1 110 3-131 64-175 (323)
5 3d3q_A TRNA delta(2)-isopenten 99.9 6.1E-23 2.1E-27 167.7 11.1 109 3-131 66-181 (340)
6 3a8t_A Adenylate isopentenyltr 99.1 9.3E-11 3.2E-15 95.7 5.5 49 3-51 99-150 (339)
7 2ze6_A Isopentenyl transferase 96.9 0.00077 2.6E-08 51.5 4.4 38 12-50 70-109 (253)
8 4g3h_A Arginase (ROCF); rossma 70.6 3.2 0.00011 33.0 3.3 37 14-50 61-100 (330)
9 2we5_A Carbamate kinase 1; arg 69.7 1.6 5.4E-05 34.2 1.3 20 22-41 173-192 (310)
10 1woh_A Agmatinase; alpha/beta 67.5 7.5 0.00026 30.2 4.8 40 13-52 91-132 (305)
11 2a0m_A Arginase superfamily pr 66.9 7.5 0.00026 30.5 4.7 36 14-49 93-130 (316)
12 2cev_A Protein (arginase); enz 66.7 5.7 0.0002 30.7 4.0 33 16-48 72-106 (299)
13 3niq_A 3-guanidinopropionase; 66.5 9.5 0.00033 30.1 5.3 38 13-50 96-135 (326)
14 3pzl_A Agmatine ureohydrolase; 66.3 9.6 0.00033 30.0 5.3 39 13-51 94-134 (313)
15 1pq3_A Arginase II, mitochondr 65.8 5.3 0.00018 31.0 3.6 34 15-48 69-104 (306)
16 3kzf_A Carbamate kinase; argin 65.4 2.2 7.4E-05 34.2 1.3 21 22-42 179-199 (317)
17 3lhl_A Putative agmatinase; pr 65.4 6.4 0.00022 30.5 4.0 37 14-50 69-107 (287)
18 1gq6_A Proclavaminate amidino 64.3 8.7 0.0003 29.9 4.6 37 13-49 91-129 (313)
19 3nio_A Guanidinobutyrase; PA14 64.1 11 0.00039 29.5 5.3 35 14-48 100-136 (319)
20 4dz4_A Agmatinase; hydrolase; 63.8 4.7 0.00016 31.9 3.0 27 22-48 120-146 (324)
21 1e19_A Carbamate kinase-like c 62.6 2.5 8.4E-05 33.2 1.1 21 22-42 177-197 (314)
22 2aeb_A Arginase 1; hydrolase, 62.4 6.6 0.00022 30.8 3.6 30 15-44 73-104 (322)
23 3sl1_A Arginase; metallohydrol 61.7 6.4 0.00022 32.6 3.5 33 14-46 166-200 (413)
24 2e9y_A Carbamate kinase; trans 59.2 3.2 0.00011 32.5 1.3 19 22-40 177-195 (316)
25 3ezx_A MMCP 1, monomethylamine 54.6 6.2 0.00021 29.2 2.1 21 22-42 164-187 (215)
26 3m1r_A Formimidoylglutamase; s 54.3 14 0.00049 29.0 4.3 37 13-49 98-138 (322)
27 1y80_A Predicted cobalamin bin 50.3 9.7 0.00033 27.6 2.5 21 22-42 158-181 (210)
28 2yxb_A Coenzyme B12-dependent 48.6 10 0.00034 26.8 2.3 20 22-41 88-109 (161)
29 3ek6_A Uridylate kinase; UMPK 47.6 11 0.00037 28.4 2.5 20 22-41 120-139 (243)
30 4a7w_A Uridylate kinase; trans 45.8 12 0.00041 28.0 2.5 21 22-42 119-139 (240)
31 2ef5_A Arginase; TTHA1496, str 45.5 12 0.0004 28.8 2.4 28 22-50 78-105 (290)
32 3kts_A Glycerol uptake operon 44.7 7.8 0.00027 28.8 1.3 18 22-39 140-157 (192)
33 2jjx_A Uridylate kinase, UMP k 42.2 14 0.00046 27.8 2.3 19 22-41 125-143 (255)
34 1qe5_A Pentosyltransferase; en 39.1 27 0.00093 26.8 3.6 8 36-43 34-41 (266)
35 1ccw_A Protein (glutamate muta 37.6 17 0.00059 24.7 2.1 20 22-41 73-94 (137)
36 1xfk_A Formimidoylglutamase; f 36.6 44 0.0015 26.2 4.6 34 14-48 99-134 (336)
37 2i2x_B MTAC, methyltransferase 36.4 19 0.00066 27.1 2.4 21 22-42 193-214 (258)
38 2ogx_B Molybdenum storage prot 33.0 18 0.00063 27.4 1.8 20 23-42 133-152 (270)
39 3nwy_A Uridylate kinase; allos 32.4 19 0.00065 27.9 1.7 21 21-42 160-180 (281)
40 1g2o_A Purine nucleoside phosp 31.3 34 0.0011 26.3 3.0 8 36-43 32-39 (268)
41 2va1_A Uridylate kinase; UMPK, 29.7 29 0.00097 26.0 2.3 18 25-42 137-154 (256)
42 2kav_A Sodium channel protein 29.5 33 0.0011 23.7 2.5 29 94-123 45-73 (129)
43 1vm6_A DHPR, dihydrodipicolina 28.3 15 0.00052 27.9 0.5 16 30-45 75-90 (228)
44 3d40_A FOMA protein; fosfomyci 27.9 19 0.00065 27.6 1.1 19 22-40 138-156 (286)
45 4h6b_A Allene oxide cyclase; B 27.9 16 0.00056 27.1 0.6 11 35-45 122-132 (195)
46 2lhu_A Mybpc3 protein; cardiac 27.0 40 0.0014 23.3 2.5 34 91-124 81-117 (124)
47 3bul_A Methionine synthase; tr 26.9 32 0.0011 29.5 2.4 21 22-42 168-189 (579)
48 2ij9_A Uridylate kinase; struc 26.9 33 0.0011 24.8 2.2 19 22-40 93-111 (219)
49 1viz_A PCRB protein homolog; s 26.7 40 0.0014 25.5 2.7 18 22-39 171-189 (240)
50 3ruf_A WBGU; rossmann fold, UD 26.5 40 0.0014 25.3 2.7 27 24-50 18-44 (351)
51 3jug_A Beta-mannanase; TIM-bar 26.2 84 0.0029 24.7 4.6 30 12-41 151-183 (345)
52 2j4j_A Uridylate kinase; trans 26.0 37 0.0013 24.7 2.3 19 22-40 96-114 (226)
53 3c1m_A Probable aspartokinase; 25.5 33 0.0011 28.2 2.1 21 22-42 176-196 (473)
54 1xrs_B D-lysine 5,6-aminomutas 24.6 48 0.0016 25.5 2.8 21 22-42 202-225 (262)
55 3fuc_A Purine nucleoside phosp 24.6 61 0.0021 25.1 3.4 31 12-43 4-36 (284)
56 2a1f_A Uridylate kinase; PYRH, 24.5 43 0.0015 24.7 2.5 19 24-42 121-139 (247)
57 1i2t_A HYD protein; four alpha 24.3 40 0.0014 20.4 1.8 18 92-109 7-24 (61)
58 3qr3_A Endoglucanase EG-II; TI 24.2 1.1E+02 0.0038 23.9 5.0 29 14-42 154-186 (340)
59 2p4h_X Vestitone reductase; NA 24.0 28 0.00096 25.7 1.3 18 31-48 1-18 (322)
60 3ix9_A Dihydrofolate reductase 23.9 57 0.0019 23.7 3.0 26 22-47 105-130 (190)
61 2f6u_A GGGPS, (S)-3-O-geranylg 23.4 40 0.0014 25.4 2.1 18 22-39 179-197 (234)
62 1z9d_A Uridylate kinase, UK, U 23.2 47 0.0016 24.6 2.5 18 25-42 121-138 (252)
63 1h1n_A Endo type cellulase ENG 22.9 1.2E+02 0.0042 22.6 4.9 29 14-42 138-170 (305)
64 2brx_A Uridylate kinase; UMP k 22.9 43 0.0015 24.8 2.2 19 22-40 116-134 (244)
65 1y5e_A Molybdenum cofactor bio 22.9 50 0.0017 23.1 2.5 21 22-42 62-84 (169)
66 3kbq_A Protein TA0487; structu 22.7 40 0.0014 24.2 1.9 21 22-42 54-74 (172)
67 3ab4_A Aspartokinase; aspartat 22.6 33 0.0011 27.7 1.6 20 22-41 119-138 (421)
68 2ako_A Glutamate 5-kinase; str 22.5 50 0.0017 24.3 2.5 18 22-39 112-129 (251)
69 3ozb_A Methylthioadenosine pho 22.4 21 0.00071 27.3 0.3 8 36-43 20-27 (259)
70 3w01_A Heptaprenylglyceryl pho 21.6 57 0.002 24.7 2.7 18 22-39 175-193 (235)
71 2pbq_A Molybdenum cofactor bio 21.6 55 0.0019 23.2 2.5 21 22-42 58-80 (178)
72 2is8_A Molybdopterin biosynthe 21.6 56 0.0019 22.7 2.5 21 22-42 52-74 (164)
73 1wix_A HOOK homolog 1, RSGI RU 21.4 51 0.0017 23.4 2.2 38 90-127 35-86 (164)
74 2ogx_A Molybdenum storage prot 21.4 33 0.0011 26.1 1.3 17 22-38 135-151 (276)
75 1cz3_A Dihydrofolate reductase 21.2 99 0.0034 21.2 3.7 30 22-51 84-114 (168)
76 2brj_A Arabidopsis thaliana ge 21.2 17 0.0006 26.8 -0.3 11 35-45 114-124 (188)
77 3vzx_A Heptaprenylglyceryl pho 21.0 48 0.0016 25.0 2.1 18 22-39 169-187 (228)
78 1ujp_A Tryptophan synthase alp 20.8 57 0.002 24.9 2.5 18 22-39 192-209 (271)
79 1nmr_A Poly(A)-binding protein 20.5 57 0.002 21.0 2.1 19 91-109 28-46 (85)
80 1mkz_A Molybdenum cofactor bio 20.4 63 0.0022 22.7 2.6 21 22-42 59-81 (172)
81 3e8x_A Putative NAD-dependent 20.4 37 0.0013 24.0 1.3 22 30-51 20-41 (236)
82 4b8w_A GDP-L-fucose synthase; 20.3 40 0.0014 24.4 1.5 22 30-51 5-26 (319)
83 1ivn_A Thioesterase I; hydrola 20.0 1.5E+02 0.005 19.8 4.4 28 11-38 77-106 (190)
No 1
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=99.98 E-value=1.5e-32 Score=222.68 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=101.7
Q ss_pred cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229 3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR 80 (131)
Q Consensus 3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~ 80 (131)
+|++.++.+.||+++|+++ ++|++|+++|++|||||||||||+||++|+. +. |+.++++| +
T Consensus 69 lid~~~~~e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTglYi~all~gl~-~~----p~~~~~~R------------~ 131 (316)
T 3foz_A 69 LLDIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLS-PL----PSADPEVR------------A 131 (316)
T ss_dssp TSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCC-CC----CCCCHHHH------------H
T ss_pred EeccCCccccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcC-CC----CCCCHHHH------------H
Confidence 6888999999999999997 7899999999999999999999999999986 44 45677788 7
Q ss_pred HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229 81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK 131 (131)
Q Consensus 81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~ 131 (131)
.+.+.++..|+++||++|+++||++|++| ||||++||+||||| +..||+
T Consensus 132 ~l~~~~~~~g~~~l~~~L~~~DP~~A~ri-~pnd~~Ri~RALEV-~~~TG~ 180 (316)
T 3foz_A 132 RIEQQAAEQGWESLHRQLQEVDPVAAARI-HPNDPQRLSRALEV-FFISGK 180 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHS-CTTCHHHHHHHHHH-HHHHSS
T ss_pred HHHHHHHhcCHHHHHHHHHHhCHHHHhhC-CCccHHHHHHHHHH-HHHHCC
Confidence 88888899999999999999999999999 99999999999999 999986
No 2
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=99.98 E-value=3.4e-32 Score=221.11 Aligned_cols=111 Identities=18% Similarity=0.203 Sum_probs=99.9
Q ss_pred cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229 3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR 80 (131)
Q Consensus 3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~ 80 (131)
+|++.++.+.||+++|+.+ ++|++|+++|++|||||||||||+||++|+.+. + ++.++.+| +
T Consensus 62 lid~~~~~e~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~-~---~~~~~~~R------------~ 125 (322)
T 3exa_A 62 LIDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLG-D---IRADEDYR------------H 125 (322)
T ss_dssp SSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCC-C---CBCCHHHH------------H
T ss_pred EeccCChhhhccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCC-C---CCCCHHHH------------H
Confidence 6888999999999999997 899999999999999999999999999998632 1 12456777 7
Q ss_pred HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229 81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK 131 (131)
Q Consensus 81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~ 131 (131)
.+.+.++..|+++||++|+++||++|++| ||||++||+||||| +..||+
T Consensus 126 ~l~~~~~~~g~~~L~~~L~~~DP~~A~~i-~pnd~~Ri~RALEV-~~~TG~ 174 (322)
T 3exa_A 126 ELEAFVNSYGVQALHDKLSKIDPKAAAAI-HPNNYRRVIRALEI-IKLTGK 174 (322)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHTTS-CTTCHHHHHHHHHH-HHHTC-
T ss_pred HHHHHHHhcCHHHHHHHHHhhCHHHHhhc-CcccHHHHHHHHHH-HHHHCC
Confidence 88888999999999999999999999999 99999999999999 899985
No 3
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=99.96 E-value=1.6e-29 Score=210.96 Aligned_cols=110 Identities=25% Similarity=0.346 Sum_probs=94.7
Q ss_pred cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229 3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR 80 (131)
Q Consensus 3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~ 80 (131)
+|.+.++.+.||+++|.+. .+|++|+++|++|||||||||||+||+.|+. +.+ +..++.+| .
T Consensus 61 lid~~~~~~~~s~~~F~~~a~~~i~~i~~~g~~pilVGGTglYi~aLl~gl~-~~~---~~~~~~~r------------~ 124 (409)
T 3eph_A 61 VMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRV-DTK---SSERKLTR------------K 124 (409)
T ss_dssp SCSCBCTTSCCCHHHHHHHHHHHHHHHHTTTCEEEEECSCGGGGGGGGTCSC-CCS---SSCCCCCH------------H
T ss_pred cCCccChHhHhhHHHHHHHHHHHHHHHHhcCCCEEEECChHHHHHHHHcccc-CCC---CccCHHHH------------H
Confidence 6778889999999999997 8999999999999999999999999999975 432 11334443 3
Q ss_pred HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229 81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK 131 (131)
Q Consensus 81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~ 131 (131)
....++..|+++||++|+++||++|++| ||||++||+||||| +..||+
T Consensus 125 -~~~~~~~~g~~~L~~~L~~~DP~~A~ri-hpnd~~Ri~RALEV-~~~TG~ 172 (409)
T 3eph_A 125 -QLDILESTDPDVIYNTLVKCDPDIATKY-HPNDYRRVQRMLEI-YYKTGK 172 (409)
T ss_dssp -HHHHHTCSSSSSHHHHHHHSCHHHHTTS-CTTCHHHHHHHHHH-HHHHCS
T ss_pred -HHHHHhccCHHHHHHHHHHhCHHHHHhc-CcccHHHHHHHHHH-HHHHCC
Confidence 3356777789999999999999999999 99999999999999 888986
No 4
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=99.94 E-value=8.4e-28 Score=195.31 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=45.8
Q ss_pred cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCCCcchhhhhhhhhhcccchH
Q psy17229 3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGR 80 (131)
Q Consensus 3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~~~~~~r~~~~~~~~~~~~~ 80 (131)
+|.+.++.+.|+++.|.+. .+|++++++|++||+|||||+|++||++|+. +.| ..++.+| .
T Consensus 64 lid~~~~~~~~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~~y~~all~g~~-~~p----~~~~~~R------------~ 126 (323)
T 3crm_A 64 LIDIRDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEGLA-DMP----GADPEVR------------A 126 (323)
T ss_dssp TSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHCCC-----------------------------
T ss_pred EeeccCcccccCHHHHHHHHHHHHHHHHHcCCeEEEECCchhhHHHHHcCCC-CCC----CCCHHHH------------H
Confidence 5677888999999999996 8999999999999999999999999999975 443 4456677 6
Q ss_pred HHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229 81 DVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK 131 (131)
Q Consensus 81 ~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~ 131 (131)
.+.+.+++.|+++||++|+++||++|++| ||||+|||+||||| +..||+
T Consensus 127 ~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i-~~nd~~Ri~RALEv-~~~tG~ 175 (323)
T 3crm_A 127 AIEAEAQAEGWEALHRQLAEVDPESAARI-HPNDPQRLMRALEV-YRLGGV 175 (323)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHcCHHHHHHHHHHhCHHHHhhc-CCCCHHHHHHHHHH-HHHHCC
Confidence 77777788899999999999999999999 99999999999999 888886
No 5
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.89 E-value=6.1e-23 Score=167.73 Aligned_cols=109 Identities=26% Similarity=0.352 Sum_probs=93.7
Q ss_pred cccCCCCCCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcccccCcCCCCC-Ccch----hhhhhhhhhc
Q psy17229 3 LIPQFPHLDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINE-QGEF----TLYDIDKMRN 75 (131)
Q Consensus 3 ~~~~~~~~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~~~~~~~~p~-~~~~----~r~~~~~~~~ 75 (131)
++....+.+.|++++|... ..+.++.++|++||||||||+|++++++++. ..+ + .+++ +|
T Consensus 66 l~di~~~~~~~~~~dF~~~a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~-~~~----~~~d~~~~~Rlr-------- 132 (340)
T 3d3q_A 66 MIDILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYA-FED----ESISEDKMKQVK-------- 132 (340)
T ss_dssp SSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSC-CC-------CCHHHHHHHH--------
T ss_pred HHHHhCCccccCHHHHHHHHHHHHHHHHhCCCcEEEECChhhhHHHHHhccc-ccC----CCCChHHHHHHH--------
Confidence 4566778889999999996 7889999999999999999999999999975 332 3 4455 55
Q ss_pred ccchHHHHHHHHhcCHHHHHHHHHhcChhhhhhcCCCCcHHHHHHHHHHhhhhcCC
Q psy17229 76 LEHGRDVLEGLWKLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKVHNAGK 131 (131)
Q Consensus 76 ~~~~~~~~~~l~~~g~~~l~~~L~~~DP~~A~~i~~~nd~rRv~RALei~~~~~g~ 131 (131)
+.+.. +++.|.+.|++.|+.+||.+|++| ||||++||+||||| +..||+
T Consensus 133 ----rrl~r-~~~~G~~~l~~~L~~vdP~~a~~I-~p~d~~Ri~RALEv-~~~tG~ 181 (340)
T 3d3q_A 133 ----LKLKE-LEHLNNNKLHEYLASFDKESAKDI-HPNNRKRVLRAIEY-YLKTKK 181 (340)
T ss_dssp ----HHHHT-TSSSCHHHHHHHHHHHCHHHHHHS-CTTCHHHHHHHHHH-HHHHCS
T ss_pred ----HHHHH-HHhcCHHHHHHHHHhhCcHHHhhc-CccCchhhhhHHHH-HHHhCC
Confidence 55555 778899999999999999999999 99999999999999 888986
No 6
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.08 E-value=9.3e-11 Score=95.70 Aligned_cols=49 Identities=27% Similarity=0.422 Sum_probs=45.7
Q ss_pred cccCCCC-CCccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcc
Q psy17229 3 LIPQFPH-LDTATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTI 51 (131)
Q Consensus 3 ~~~~~~~-~e~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~ 51 (131)
+|.+.++ .+.||++.|.+. .+|++|+++|++||+|||||+|++++++|+
T Consensus 99 lidi~~~~~e~~s~~~F~~~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~ 150 (339)
T 3a8t_A 99 LLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDR 150 (339)
T ss_dssp SSSCBCGGGCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSS
T ss_pred eccccCcccCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCC
Confidence 5677888 899999999997 889999999999999999999999999996
No 7
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.94 E-value=0.00077 Score=51.55 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=34.3
Q ss_pred ccCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229 12 TATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWT 50 (131)
Q Consensus 12 ~ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g 50 (131)
.|++..|.+. ..+ +++++|+.||++||++.|+++++.+
T Consensus 70 ~~~~~~f~~~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~ 109 (253)
T 2ze6_A 70 ILDAESAHRRLIFEV-DWRKSEEGLILEGGSISLLNCMAKS 109 (253)
T ss_dssp SCCHHHHHHHHHHHH-HTTTTSSEEEEEECCHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHH-HHHhCCCCeEEeccHHHHHHHHHhc
Confidence 6899999885 677 8889999999999999999999876
No 8
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=70.56 E-value=3.2 Score=32.96 Aligned_cols=37 Identities=8% Similarity=0.335 Sum_probs=27.0
Q ss_pred CHHHHH-HH--HHHHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229 14 TGGVVC-RA--SQIDDILQRNKVPIIVGGTNYYIESLLWT 50 (131)
Q Consensus 14 sv~~f~-~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g 50 (131)
++.+++ +. +.+.+++++|++||+.||-+.=--..+.+
T Consensus 61 ~v~~~~~~~l~~~v~~il~~g~~PivLGGdHsia~g~i~a 100 (330)
T 4g3h_A 61 DYYLFCKENLIPCMKEVFEKKEFPLILSSEHANMFGIFQA 100 (330)
T ss_dssp HHHHHHHHTHHHHHHHHHTSSSCEEEECSSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCcchhhHHHHHH
Confidence 355556 43 78999999999999999988654444433
No 9
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=69.67 E-value=1.6 Score=34.19 Aligned_cols=20 Identities=20% Similarity=0.531 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCceEEEcCCh
Q psy17229 22 SQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTg 41 (131)
+.|+.+++.|.+||+.||+|
T Consensus 173 ~~i~~lL~~g~IpIi~Gg~G 192 (310)
T 2we5_A 173 ETINTLIKNDIITISCGGGG 192 (310)
T ss_dssp HHHHHHHHTTCEEECCGGGC
T ss_pred HHHHHHHHCCCEEEEECCCC
Confidence 78999999999999999876
No 10
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Probab=67.49 E-value=7.5 Score=30.23 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=31.6
Q ss_pred cCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhccc
Q psy17229 13 ATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTIL 52 (131)
Q Consensus 13 ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~~ 52 (131)
.++.+..+. +.+.+++++|++||+.||-+.=--..+.++.
T Consensus 91 ~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~a~~ 132 (305)
T 1woh_A 91 LEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFA 132 (305)
T ss_dssp SCHHHHHHHHHHHHHHHHTTEEEEEEEESSGGGHHHHHGGGT
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEECCCccchHHHHHHHH
Confidence 356666554 8899999999999999999887777777653
No 11
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein structure initia structural genomics of pathogenic protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP: c.42.1.1
Probab=66.88 E-value=7.5 Score=30.49 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=26.6
Q ss_pred CHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHh
Q psy17229 14 TGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLW 49 (131)
Q Consensus 14 sv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~ 49 (131)
++.+..+. +.+.+++++|++||+.||-+.=--..+.
T Consensus 93 ~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~ 130 (316)
T 2a0m_A 93 TLEEAHEKLESKVFTVLARGAFPFVIGGGNDQSAPNGR 130 (316)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEECCcchhhHHHHH
Confidence 45555554 7889999999999999998765444433
No 12
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A*
Probab=66.65 E-value=5.7 Score=30.70 Aligned_cols=33 Identities=21% Similarity=0.493 Sum_probs=24.2
Q ss_pred HHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHH
Q psy17229 16 GVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLL 48 (131)
Q Consensus 16 ~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl 48 (131)
.+.++. +.+.+++++|++||+.||-+.=--..+
T Consensus 72 ~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~ 106 (299)
T 2cev_A 72 AEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTL 106 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEecCCcccchhhh
Confidence 344443 788899999999999999887533333
No 13
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas aeruginosa} PDB: 3nip_A
Probab=66.54 E-value=9.5 Score=30.12 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=27.6
Q ss_pred cCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229 13 ATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWT 50 (131)
Q Consensus 13 ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g 50 (131)
.++....+. +.+.+++++|++||+.||-+.=--+.+.+
T Consensus 96 ~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~a 135 (326)
T 3niq_A 96 IDLLDSLRRIEGFYRQVHAAGTLPLSVGGDHLVTLPIFRA 135 (326)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhhHHHHHH
Confidence 344444443 78899999999999999988755455444
No 14
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.70A {Thermoplasma volcanium GSS1}
Probab=66.25 E-value=9.6 Score=29.98 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=30.3
Q ss_pred cCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhcc
Q psy17229 13 ATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWTI 51 (131)
Q Consensus 13 ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g~ 51 (131)
.++....+. +.+.++.++|++||+.||-+.=--..+.++
T Consensus 94 ~~~~~~~~~i~~~v~~~l~~g~~PivlGGdHsit~~~~~a~ 134 (313)
T 3pzl_A 94 EDVEYVIDTVESVVSAVMSDGKIPIMLGGEHSITVGAVRAL 134 (313)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHh
Confidence 345555543 789999999999999999988777777664
No 15
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Probab=65.79 E-value=5.3 Score=31.01 Aligned_cols=34 Identities=9% Similarity=0.171 Sum_probs=25.2
Q ss_pred HHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHH
Q psy17229 15 GGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLL 48 (131)
Q Consensus 15 v~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl 48 (131)
+.+..+. +.+.++.++|++||+.||-+.=--..+
T Consensus 69 ~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~ 104 (306)
T 1pq3_A 69 VGLANQELAEVVSRAVSDGYSCVTLGGDHSLAIGTI 104 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEcCcccchHhHH
Confidence 4555553 788899999999999999876443333
No 16
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=65.37 E-value=2.2 Score=34.24 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCceEEEcCChH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTgl 42 (131)
+.|+.+++.|.+||++||.|.
T Consensus 179 ~~I~~LL~~G~IvI~aGGgGi 199 (317)
T 3kzf_A 179 GVIKTLIDNNVLVICTNGGGI 199 (317)
T ss_dssp HHHHHHHHTTCEEECCGGGCE
T ss_pred HHHHHHHHCCCEEEEeCCCCC
Confidence 789999999999999999885
No 17
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), nysgxrc structural genomics, NEW YORK SGX research center for struc genomics; 2.30A {Clostridium difficile}
Probab=65.37 E-value=6.4 Score=30.49 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=26.2
Q ss_pred CHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229 14 TGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLWT 50 (131)
Q Consensus 14 sv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~g 50 (131)
+.....+. +.+.+++++|++||+.||-+.=--..+.+
T Consensus 69 ~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~a 107 (287)
T 3lhl_A 69 STEQVLKEIYQETYKIVRDSKVPFMIGGEHLVTLPAFKA 107 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEeCCcchhhHHHHHH
Confidence 34444443 78899999999999999988654444433
No 18
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibioti; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A
Probab=64.26 E-value=8.7 Score=29.92 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=27.4
Q ss_pred cCHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHHh
Q psy17229 13 ATGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLLW 49 (131)
Q Consensus 13 ysv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl~ 49 (131)
.++.+..+. +.+.++.++|++||+.||-+.=--..+.
T Consensus 91 ~~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~~ 129 (313)
T 1gq6_A 91 FDMNIAIDTAQSHLSGLLKANAAFLMIGGDHSLTVAALR 129 (313)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSSEEEEEESCGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhhHHHHH
Confidence 456666664 7889999999999999998764444433
No 19
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A {Pseudomonas aeruginosa} SCOP: c.42.1.0
Probab=64.06 E-value=11 Score=29.51 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=25.6
Q ss_pred CHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHH
Q psy17229 14 TGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLL 48 (131)
Q Consensus 14 sv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl 48 (131)
++..-.+. +.+.+++++|++||+.||-+.=--..+
T Consensus 100 ~~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit~~~~ 136 (319)
T 3nio_A 100 NLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPIL 136 (319)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEECCCGGGHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEECCcchhhHHHH
Confidence 44444443 789999999999999999876433333
No 20
>4dz4_A Agmatinase; hydrolase; 1.70A {Burkholderia thailandensis}
Probab=63.80 E-value=4.7 Score=31.87 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=22.0
Q ss_pred HHHHHHHhCCCceEEEcCChHHHHHHH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNYYIESLL 48 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTglYi~sLl 48 (131)
+.+.+++++|++||+.||-+.=--..+
T Consensus 120 ~~v~~~l~~g~~pi~lGGdHsit~~~~ 146 (324)
T 4dz4_A 120 EHARTILQSDARMLTLGGDHYITYPLL 146 (324)
T ss_dssp HHHHHHHTTTCEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHCCCEEEEeCCcchhhHHHH
Confidence 788999999999999999886544443
No 21
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=62.58 E-value=2.5 Score=33.23 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=18.1
Q ss_pred HHHHHHHhCCCceEEEcCChH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTgl 42 (131)
+.|+.+++.|.+||+.||+|.
T Consensus 177 ~~i~~lL~~g~IpV~~Gg~gi 197 (314)
T 1e19_A 177 ETIKKLVERGVIVIASGGGGV 197 (314)
T ss_dssp HHHHHHHHTTCEEECSGGGCE
T ss_pred HHHHHHHHCCCEEEEeCCCcc
Confidence 679999999999999888664
No 22
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A 2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A* 3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A* 3tf3_A 3th7_A 3the_A* ...
Probab=62.36 E-value=6.6 Score=30.77 Aligned_cols=30 Identities=10% Similarity=0.426 Sum_probs=23.4
Q ss_pred HHHHHHH--HHHHHHHhCCCceEEEcCChHHH
Q psy17229 15 GGVVCRA--SQIDDILQRNKVPIIVGGTNYYI 44 (131)
Q Consensus 15 v~~f~~~--~~I~~i~~rgkiPIlVGGTglYi 44 (131)
+.+..+. +.+.+++++|++||+.||-+.=-
T Consensus 73 ~~~~~~~i~~~v~~~l~~g~~pi~lGGdHsit 104 (322)
T 2aeb_A 73 VGKASEQLAGKVAEVKKNGRISLVLGGDHSLA 104 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESCGGGH
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecCccccc
Confidence 4555443 78889999999999999987543
No 23
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex; HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A* 3sl0_A*
Probab=61.66 E-value=6.4 Score=32.60 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=24.8
Q ss_pred CHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHH
Q psy17229 14 TGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIES 46 (131)
Q Consensus 14 sv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~s 46 (131)
.+.++++. +.+.+++++|++||+.||-+.=--.
T Consensus 166 ~v~~~~~~L~~~V~~il~~G~~PIvLGGDHSIalg 200 (413)
T 3sl1_A 166 EIGIFSKNLFDTMSNELRKKNFVLNIGGDHGVAFS 200 (413)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEESSGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCchHhHHH
Confidence 44455553 7899999999999999998764333
No 24
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=59.18 E-value=3.2 Score=32.55 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCceEEEcCC
Q psy17229 22 SQIDDILQRNKVPIIVGGT 40 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGT 40 (131)
+.|+.+++.|.+||+.||.
T Consensus 177 ~~i~~lL~~g~IpI~~g~~ 195 (316)
T 2e9y_A 177 DLIAEASAESPAVVALGGG 195 (316)
T ss_dssp HHHHHHHHHCSEEEECGGG
T ss_pred HHHHHHHHCCCEEEEECCC
Confidence 7899999999999999764
No 25
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=54.58 E-value=6.2 Score=29.25 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=17.1
Q ss_pred HHHHHHHhCC---CceEEEcCChH
Q psy17229 22 SQIDDILQRN---KVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rg---kiPIlVGGTgl 42 (131)
+.|+.+.++| ++||+|||..+
T Consensus 164 ~~i~~l~~~~~~~~v~v~vGG~~~ 187 (215)
T 3ezx_A 164 DLMDRLNEEKLRDSVKCMFGGAPV 187 (215)
T ss_dssp HHHHHHHHTTCGGGSEEEEESSSC
T ss_pred HHHHHHHHcCCCCCCEEEEECCCC
Confidence 6788888876 69999999754
No 26
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Probab=54.30 E-value=14 Score=28.96 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=27.0
Q ss_pred cCHHHHHHH--HHHHHHHhCCC--ceEEEcCChHHHHHHHh
Q psy17229 13 ATGGVVCRA--SQIDDILQRNK--VPIIVGGTNYYIESLLW 49 (131)
Q Consensus 13 ysv~~f~~~--~~I~~i~~rgk--iPIlVGGTglYi~sLl~ 49 (131)
.++....+. +.+.+++++|+ +||+.||-+.=--..+.
T Consensus 98 ~~~~~~~~~i~~~v~~~l~~g~~~~pi~lGGdHsit~~~~~ 138 (322)
T 3m1r_A 98 TDIVKSHHHIFQTMHALLSDHPDWVPLILGGDNSISYSTIK 138 (322)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTTEEEEEEESCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCceeEEeCCCccccHHHHH
Confidence 345555553 78999999999 99999998865444443
No 27
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=50.26 E-value=9.7 Score=27.58 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=16.4
Q ss_pred HHHHHHHhCC---CceEEEcCChH
Q psy17229 22 SQIDDILQRN---KVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rg---kiPIlVGGTgl 42 (131)
..|+.+.++| ++||+|||.+.
T Consensus 158 ~~i~~l~~~~~~~~~~v~vGG~~~ 181 (210)
T 1y80_A 158 STIDALIAAGLRDRVKVIVGGAPL 181 (210)
T ss_dssp HHHHHHHHTTCGGGCEEEEESTTC
T ss_pred HHHHHHHhcCCCCCCeEEEECCCC
Confidence 5677777765 59999999765
No 28
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=48.58 E-value=10 Score=26.76 Aligned_cols=20 Identities=20% Similarity=0.559 Sum_probs=15.5
Q ss_pred HHHHHHHhCC--CceEEEcCCh
Q psy17229 22 SQIDDILQRN--KVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rg--kiPIlVGGTg 41 (131)
+.|+.+.+.| ++||+|||..
T Consensus 88 ~~i~~L~~~g~~~i~v~vGG~~ 109 (161)
T 2yxb_A 88 RLMAKLRELGADDIPVVLGGTI 109 (161)
T ss_dssp HHHHHHHHTTCTTSCEEEEECC
T ss_pred HHHHHHHhcCCCCCEEEEeCCC
Confidence 5677777765 5999999964
No 29
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=47.61 E-value=11 Score=28.39 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCceEEEcCCh
Q psy17229 22 SQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTg 41 (131)
+.+..+++.|.+||+.||+|
T Consensus 120 ~~~~~lL~~g~IpVv~~~~g 139 (243)
T 3ek6_A 120 RRAIRHLEKGRIAIFAAGTG 139 (243)
T ss_dssp HHHHHHHHTTCEEEEESTTS
T ss_pred HHHHHHHHCCcEEEEECCCC
Confidence 45678889999999999876
No 30
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=45.84 E-value=12 Score=28.04 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCceEEEcCChH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTgl 42 (131)
+.+..+++.|.+||+.||+|.
T Consensus 119 ~~i~~lL~~g~ipVi~~~~g~ 139 (240)
T 4a7w_A 119 RKAIRHLEKGRVVIFGAGTGN 139 (240)
T ss_dssp HHHHHHHHTTCEEEEESTTSC
T ss_pred HHHHHHHHCCCEEEEeCCCCC
Confidence 456778899999999998763
No 31
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on protein structural and function analyses; HET: LYS; 2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Probab=45.46 E-value=12 Score=28.79 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229 22 SQIDDILQRNKVPIIVGGTNYYIESLLWT 50 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTglYi~sLl~g 50 (131)
+.+.+ +++|++||+.||-+.=--..+.+
T Consensus 78 ~~v~~-l~~g~~pi~lGGdHsit~~~~~a 105 (290)
T 2ef5_A 78 ERLAA-LPEGVFPIVLGGDHSLSMGSVAG 105 (290)
T ss_dssp HHHHT-SCTTEEEEEEESSGGGHHHHHHH
T ss_pred HHHHH-hhcCceEEEEcCcccchHHHHHH
Confidence 66777 78999999999987654444443
No 32
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=44.72 E-value=7.8 Score=28.76 Aligned_cols=18 Identities=33% Similarity=0.791 Sum_probs=15.5
Q ss_pred HHHHHHHhCCCceEEEcC
Q psy17229 22 SQIDDILQRNKVPIIVGG 39 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGG 39 (131)
+.|+++.++=.+|||+||
T Consensus 140 ~iI~~i~~~~~~PiIaGG 157 (192)
T 3kts_A 140 EQVQKMTQKLHIPVIAGG 157 (192)
T ss_dssp HHHHHHHHHHCCCEEEES
T ss_pred HHHHHHHHhcCCCEEEEC
Confidence 567888888899999999
No 33
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=42.23 E-value=14 Score=27.80 Aligned_cols=19 Identities=21% Similarity=0.379 Sum_probs=15.4
Q ss_pred HHHHHHHhCCCceEEEcCCh
Q psy17229 22 SQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTg 41 (131)
.++ .+++.|.+||+.||+|
T Consensus 125 ~~~-~lL~~g~IpVi~gg~g 143 (255)
T 2jjx_A 125 RAV-HHLDNGYIVIFGGGNG 143 (255)
T ss_dssp HHH-HHHHTTCEEEEESTTS
T ss_pred HHH-HHHhCCcEEEEeCCCC
Confidence 445 7788999999998775
No 34
>1qe5_A Pentosyltransferase; enzyme, purine nucleoside phosphorylase; 2.20A {Cellulomonas SP} SCOP: c.56.2.1 PDB: 1c3x_A
Probab=39.09 E-value=27 Score=26.76 Aligned_cols=8 Identities=25% Similarity=0.434 Sum_probs=7.2
Q ss_pred EEcCChHH
Q psy17229 36 IVGGTNYY 43 (131)
Q Consensus 36 lVGGTglY 43 (131)
|+||||||
T Consensus 34 iI~GSGl~ 41 (266)
T 1qe5_A 34 LVLGSGWG 41 (266)
T ss_dssp EECCTTCT
T ss_pred EEeCCchh
Confidence 67999998
No 35
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=37.59 E-value=17 Score=24.69 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=15.1
Q ss_pred HHHHHHHhCC--CceEEEcCCh
Q psy17229 22 SQIDDILQRN--KVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rg--kiPIlVGGTg 41 (131)
+.++.+.++| .+||+|||..
T Consensus 73 ~~i~~l~~~g~~~i~v~vGG~~ 94 (137)
T 1ccw_A 73 GLRQKCDEAGLEGILLYVGGNI 94 (137)
T ss_dssp THHHHHHHTTCTTCEEEEEESC
T ss_pred HHHHHHHhcCCCCCEEEEECCC
Confidence 5677776765 4999999964
No 36
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae O1 biovar eltor, structure genomics, protein structure initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1
Probab=36.62 E-value=44 Score=26.15 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=25.0
Q ss_pred CHHHHHHH--HHHHHHHhCCCceEEEcCChHHHHHHH
Q psy17229 14 TGGVVCRA--SQIDDILQRNKVPIIVGGTNYYIESLL 48 (131)
Q Consensus 14 sv~~f~~~--~~I~~i~~rgkiPIlVGGTglYi~sLl 48 (131)
++....+. +.+.+++++ ++||+.||-+.=--..+
T Consensus 99 ~~~~~~~~i~~~v~~~l~~-~~pi~LGGdHsit~g~~ 134 (336)
T 1xfk_A 99 ELEQAQQECAQVIQQALPH-ARAIVLGGGHEIAWATF 134 (336)
T ss_dssp CHHHHHHHHHHHHHHHTTT-CCEEEECSSTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh-CCeEEEeCchhhhHHHH
Confidence 45555554 788999999 99999999876443333
No 37
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=36.42 E-value=19 Score=27.12 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=15.2
Q ss_pred HHHHHHHhCC-CceEEEcCChH
Q psy17229 22 SQIDDILQRN-KVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rg-kiPIlVGGTgl 42 (131)
..|+.+.++| .+||+|||...
T Consensus 193 ~~i~~l~~~~~~~~v~vGG~~~ 214 (258)
T 2i2x_B 193 EVNDMLLENGIKIPFACGGGAV 214 (258)
T ss_dssp HHHHHHHTTTCCCCEEEESTTC
T ss_pred HHHHHHHhcCCCCcEEEECccC
Confidence 5667776654 49999999654
No 38
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=33.01 E-value=18 Score=27.37 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=16.8
Q ss_pred HHHHHHhCCCceEEEcCChH
Q psy17229 23 QIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 23 ~I~~i~~rgkiPIlVGGTgl 42 (131)
.|..+++.|.+||+.|+.|+
T Consensus 133 ~i~~lL~~g~ipVi~g~~g~ 152 (270)
T 2ogx_B 133 AVPLSLAEVNAVVFSGMPPY 152 (270)
T ss_dssp HHHHHCTTCCEEEEECSCTT
T ss_pred HHHHHHhCCCEEEEeCCccc
Confidence 47888999999999998553
No 39
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=32.41 E-value=19 Score=27.91 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCceEEEcCChH
Q psy17229 21 ASQIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 21 ~~~I~~i~~rgkiPIlVGGTgl 42 (131)
.+.+ .+++.|.+||+.||+|.
T Consensus 160 ~~~l-~lL~~g~IpVv~g~~g~ 180 (281)
T 3nwy_A 160 LRAV-RHLEKGRVVIFGAGMGL 180 (281)
T ss_dssp HHHH-HHHHTTCEEEEESTTSS
T ss_pred HHHH-HHHHcCCeEEEECCCCC
Confidence 3456 67899999999997763
No 40
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A*
Probab=31.35 E-value=34 Score=26.25 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=7.1
Q ss_pred EEcCChHH
Q psy17229 36 IVGGTNYY 43 (131)
Q Consensus 36 lVGGTglY 43 (131)
|+||||||
T Consensus 32 iI~GSGl~ 39 (268)
T 1g2o_A 32 VVLGSGWL 39 (268)
T ss_dssp EEECTTCG
T ss_pred EEcCCchh
Confidence 67999998
No 41
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=29.70 E-value=29 Score=26.03 Aligned_cols=18 Identities=28% Similarity=0.636 Sum_probs=15.5
Q ss_pred HHHHhCCCceEEEcCChH
Q psy17229 25 DDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 25 ~~i~~rgkiPIlVGGTgl 42 (131)
..+++.|.+||+.||+|.
T Consensus 137 ~~lL~~g~IpVi~~~~g~ 154 (256)
T 2va1_A 137 KKAIEKEQVMIFVAGTGF 154 (256)
T ss_dssp HHHHHTTCEEEEESTTSS
T ss_pred HHHHhCCcEEEEECCCCC
Confidence 578899999999998873
No 42
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A
Probab=29.51 E-value=33 Score=23.72 Aligned_cols=29 Identities=10% Similarity=-0.046 Sum_probs=17.4
Q ss_pred HHHHHHhcChhhhhhcCCCCcHHHHHHHHH
Q psy17229 94 KDDLFKVHDTDKIDELEGENDKRDNKREDL 123 (131)
Q Consensus 94 l~~~L~~~DP~~A~~i~~~nd~rRv~RALe 123 (131)
.++..++.||+....| +..+..++.++|.
T Consensus 45 F~~~W~~fDP~aTg~I-~~~~L~~ll~~L~ 73 (129)
T 2kav_A 45 FYEVWEKFDPDATQFI-EFAKLSDFADALD 73 (129)
T ss_dssp HHHHHHHHCTTCCCEE-CGGGHHHHHHHSC
T ss_pred HHHHHHhcCCCCceEE-eHHHHHHHHHhCC
Confidence 4444555566666666 6666666666553
No 43
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=28.29 E-value=15 Score=27.94 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=12.7
Q ss_pred CCCceEEEcCChHHHH
Q psy17229 30 RNKVPIIVGGTNYYIE 45 (131)
Q Consensus 30 rgkiPIlVGGTglYi~ 45 (131)
+.++|+|+|=|||.-+
T Consensus 75 ~~g~~~ViGTTG~~~~ 90 (228)
T 1vm6_A 75 KYRAGLVLGTTALKEE 90 (228)
T ss_dssp HHTCEEEECCCSCCHH
T ss_pred HcCCCEEEeCCCCCHH
Confidence 3578999999998654
No 44
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=27.90 E-value=19 Score=27.60 Aligned_cols=19 Identities=21% Similarity=0.653 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCceEEEcCC
Q psy17229 22 SQIDDILQRNKVPIIVGGT 40 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGT 40 (131)
+.|..+++.|.+||+.|++
T Consensus 138 ~~i~~lL~~g~IpVi~gd~ 156 (286)
T 3d40_A 138 EVLRDVLDHGALPVLAGDA 156 (286)
T ss_dssp SHHHHHHHTTCEEEEECEE
T ss_pred HHHHHHHHCcCEEEEcCCe
Confidence 5788999999999999844
No 45
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=27.90 E-value=16 Score=27.08 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=8.7
Q ss_pred EEEcCChHHHH
Q psy17229 35 IIVGGTNYYIE 45 (131)
Q Consensus 35 IlVGGTglYi~ 45 (131)
-|+||||.|=-
T Consensus 122 AITGGTGiF~G 132 (195)
T 4h6b_A 122 AITGGSGIFAG 132 (195)
T ss_dssp EEEEESGGGTT
T ss_pred EEecCcceEcc
Confidence 48899999843
No 46
>2lhu_A Mybpc3 protein; cardiac, structural protein; NMR {Mus musculus}
Probab=27.01 E-value=40 Score=23.32 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcChhhhhhcC---CCCcHHHHHHHHHH
Q psy17229 91 KEEKDDLFKVHDTDKIDELE---GENDKRDNKREDLF 124 (131)
Q Consensus 91 ~~~l~~~L~~~DP~~A~~i~---~~nd~rRv~RALei 124 (131)
.+.+|++|+..||.-+.+|. ...|.|-+.|.|..
T Consensus 81 ~edvWElL~~A~pkdYEkIAf~YGITDlRGMLKrLk~ 117 (124)
T 2lhu_A 81 EEDVWEILRQAPPSEYERIAFQHGVTDLRGMLKRLKG 117 (124)
T ss_dssp -CCHHHHHTTSCGGGHHHHHHHTTCCCHHHHHHHHC-
T ss_pred hHHHHHHHccCCcchHHHHHHHhCcHHHHHHHHHHHH
Confidence 44799999999999888882 38999999999843
No 47
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=26.94 E-value=32 Score=29.51 Aligned_cols=21 Identities=14% Similarity=0.585 Sum_probs=15.9
Q ss_pred HHHHHHHhCC-CceEEEcCChH
Q psy17229 22 SQIDDILQRN-KVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rg-kiPIlVGGTgl 42 (131)
..|+.+.++| ++||+|||...
T Consensus 168 ~~i~~Lr~~g~~i~ViVGGa~~ 189 (579)
T 3bul_A 168 NVAKEMERQGFTIPLLIGGATT 189 (579)
T ss_dssp HHHHHHHHTTCCSCEEEESTTC
T ss_pred HHHHHHHHcCCCCeEEEEcccc
Confidence 5677776665 79999999754
No 48
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=26.91 E-value=33 Score=24.75 Aligned_cols=19 Identities=11% Similarity=0.237 Sum_probs=16.1
Q ss_pred HHHHHHHhCCCceEEEcCC
Q psy17229 22 SQIDDILQRNKVPIIVGGT 40 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGT 40 (131)
+.|..+++.|.+||+.||.
T Consensus 93 ~~i~~ll~~g~ipVi~~g~ 111 (219)
T 2ij9_A 93 MEAEELSKLYRVVVMGGTF 111 (219)
T ss_dssp HHHHHHHTTCSEEEECCCS
T ss_pred HHHHHHHHCCCEEEEeCCC
Confidence 5578899999999999864
No 49
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=26.69 E-value=40 Score=25.48 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=15.7
Q ss_pred HHHHHHHhCC-CceEEEcC
Q psy17229 22 SQIDDILQRN-KVPIIVGG 39 (131)
Q Consensus 22 ~~I~~i~~rg-kiPIlVGG 39 (131)
+.|+++.+.. .+|++|||
T Consensus 171 ~~i~~i~~~~~~~Pv~vGg 189 (240)
T 1viz_A 171 EAVKKTKAVLETSTLFYGG 189 (240)
T ss_dssp HHHHHHHHTCSSSEEEEES
T ss_pred HHHHHHHHhcCCCCEEEEe
Confidence 6788888887 99999998
No 50
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=26.49 E-value=40 Score=25.29 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=18.5
Q ss_pred HHHHHhCCCceEEEcCChHHHHHHHhc
Q psy17229 24 IDDILQRNKVPIIVGGTNYYIESLLWT 50 (131)
Q Consensus 24 I~~i~~rgkiPIlVGGTglYi~sLl~g 50 (131)
-......++.-+|+||||+==.+|+..
T Consensus 18 ~~~~~~~~~~vlVtGatG~iG~~l~~~ 44 (351)
T 3ruf_A 18 TQQLIFSPKTWLITGVAGFIGSNLLEK 44 (351)
T ss_dssp HHHHHHSCCEEEEETTTSHHHHHHHHH
T ss_pred HhhCCCCCCeEEEECCCcHHHHHHHHH
Confidence 344455788889999999855555443
No 51
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=26.17 E-value=84 Score=24.68 Aligned_cols=30 Identities=10% Similarity=0.178 Sum_probs=21.7
Q ss_pred ccCHHHHHHH--HHHHHHHhCC-CceEEEcCCh
Q psy17229 12 TATGGVVCRA--SQIDDILQRN-KVPIIVGGTN 41 (131)
Q Consensus 12 ~ysv~~f~~~--~~I~~i~~rg-kiPIlVGGTg 41 (131)
.++...|.+. ++|+.|++.+ +.||+|||.+
T Consensus 151 ~~~~~~w~~~~~~~i~~IR~~dp~~~Iiv~g~~ 183 (345)
T 3jug_A 151 SWDGAAWADGYIDVIPKLRDAGLTHTLMVDAAG 183 (345)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 4566667654 7788887765 5799999865
No 52
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=25.96 E-value=37 Score=24.65 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=15.6
Q ss_pred HHHHHHHhCCCceEEEcCC
Q psy17229 22 SQIDDILQRNKVPIIVGGT 40 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGT 40 (131)
+.|..+++.|.+||+.||+
T Consensus 96 ~~i~~ll~~g~ipVi~gg~ 114 (226)
T 2j4j_A 96 EEFIQDWSHGKVVVTGGFQ 114 (226)
T ss_dssp HHHHHHHTTSSBEEECCCS
T ss_pred HHHHHHHHCCCEEEEcCCC
Confidence 4577888999999999863
No 53
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=25.46 E-value=33 Score=28.24 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCceEEEcCChH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTgl 42 (131)
..|+.+++.|.+||+.|+.|.
T Consensus 176 ~~i~~ll~~g~ipVv~G~~g~ 196 (473)
T 3c1m_A 176 ERLLPLLKEGIIPVVTGFIGT 196 (473)
T ss_dssp HHHHHHHHTTCEEEEESSEEE
T ss_pred HHHHHHHhCCcEEEEeCCccc
Confidence 667788899999999986654
No 54
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=24.62 E-value=48 Score=25.50 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=15.6
Q ss_pred HHHHHHHhCC---CceEEEcCChH
Q psy17229 22 SQIDDILQRN---KVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rg---kiPIlVGGTgl 42 (131)
+.|+.+.++| ++||+|||...
T Consensus 202 ~~i~~L~~~g~~~~i~vivGG~~~ 225 (262)
T 1xrs_B 202 HLIELLEAEGLRDRFVLLCGGPRI 225 (262)
T ss_dssp HHHHHHHHTTCGGGSEEEEECTTC
T ss_pred HHHHHHHhcCCCCCCEEEEECCcC
Confidence 5677776665 49999999754
No 55
>3fuc_A Purine nucleoside phosphorylase; recombinant, glycosyltransferase, transferase, 9-deazaguanine, multisubstrate analogue inhibitors, nucleoside-binding; HET: 9D9 9DG; 1.45A {Bos taurus} SCOP: c.56.2.1 PDB: 1b8n_A* 1b8o_A* 2ai2_A* 1v48_A* 2ai1_A* 2ai3_A* 1lvu_A* 1lv8_A* 1a9o_A 1a9p_A* 1a9s_A* 1fxu_A* 2qpl_A* 1a9t_A* 3pnp_A 1pbn_A 4pnp_A 1a9q_A* 1a9r_A* 1vfn_A* ...
Probab=24.57 E-value=61 Score=25.08 Aligned_cols=31 Identities=6% Similarity=-0.036 Sum_probs=16.1
Q ss_pred ccCHHHHHHH-HHHHHHHhCCCceE-EEcCChHH
Q psy17229 12 TATGGVVCRA-SQIDDILQRNKVPI-IVGGTNYY 43 (131)
Q Consensus 12 ~ysv~~f~~~-~~I~~i~~rgkiPI-lVGGTglY 43 (131)
.|+-.+.... +.|.+-.. -+.-| |+||||||
T Consensus 4 ~~~~~~~~~~~~~i~~~~~-~~p~igiI~GSGl~ 36 (284)
T 3fuc_A 4 GYTYEDYQDTAKWLLSHTE-QRPQVAVICGSGLG 36 (284)
T ss_dssp CCCHHHHHHHHHHHHHHCC-CCCSEEEEECTTCG
T ss_pred chHHHHHHHHHHHHHHhcC-CCCcEEEEecCchh
Confidence 3444444433 44444322 22223 78999999
No 56
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=24.51 E-value=43 Score=24.71 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=15.6
Q ss_pred HHHHHhCCCceEEEcCChH
Q psy17229 24 IDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 24 I~~i~~rgkiPIlVGGTgl 42 (131)
+..+++.|.+||+.||+|.
T Consensus 121 ~~~ll~~g~ipVi~~~~g~ 139 (247)
T 2a1f_A 121 AIKMLREKRVVIFSAGTGN 139 (247)
T ss_dssp HHHHHHTTCEEEEESTTSC
T ss_pred HHHHHhCCCEEEEeCCcCC
Confidence 3678899999999998763
No 57
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=24.26 E-value=40 Score=20.37 Aligned_cols=18 Identities=6% Similarity=-0.040 Sum_probs=15.3
Q ss_pred HHHHHHHHhcChhhhhhc
Q psy17229 92 EEKDDLFKVHDTDKIDEL 109 (131)
Q Consensus 92 ~~l~~~L~~~DP~~A~~i 109 (131)
+.||-+..+++|+.|.+|
T Consensus 7 e~Lyp~V~~~~p~~A~KI 24 (61)
T 1i2t_A 7 ERLYPRVQAMQPAFASKI 24 (61)
T ss_dssp HHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHhCcccccch
Confidence 568888888999988887
No 58
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}
Probab=24.22 E-value=1.1e+02 Score=23.87 Aligned_cols=29 Identities=10% Similarity=0.097 Sum_probs=21.7
Q ss_pred CHHHHHHH--HHHHHHHhCCC--ceEEEcCChH
Q psy17229 14 TGGVVCRA--SQIDDILQRNK--VPIIVGGTNY 42 (131)
Q Consensus 14 sv~~f~~~--~~I~~i~~rgk--iPIlVGGTgl 42 (131)
+...|... ++|+.|++.+. .+|+|||.++
T Consensus 154 ~~~~w~~~~~~~i~aIR~~~~~~~~Iiv~g~~w 186 (340)
T 3qr3_A 154 NINTWAATVQEVVTAIRNAGATSQFISLPGNDW 186 (340)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCSSCEEEECSGG
T ss_pred CHHHHHHHHHHHHHHHHhhCCCccEEEEeCCcc
Confidence 56677664 78888888765 4999999764
No 59
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}
Probab=24.03 E-value=28 Score=25.71 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=12.9
Q ss_pred CCceEEEcCChHHHHHHH
Q psy17229 31 NKVPIIVGGTNYYIESLL 48 (131)
Q Consensus 31 gkiPIlVGGTglYi~sLl 48 (131)
||.-+|.||||+==.+|+
T Consensus 1 ~k~vlVTGatG~iG~~l~ 18 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWII 18 (322)
T ss_dssp CCEEEEESTTSHHHHHHH
T ss_pred CCEEEEECChhHHHHHHH
Confidence 566789999998544444
No 60
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=23.94 E-value=57 Score=23.68 Aligned_cols=26 Identities=27% Similarity=0.242 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCceEEEcCChHHHHHH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNYYIESL 47 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTglYi~sL 47 (131)
++++.+.++++--.|+||..+|=++|
T Consensus 105 eal~~lk~~~~~i~ViGG~~ly~~~l 130 (190)
T 3ix9_A 105 SVLDWYSAQEKNLYIVGGKQIFQAFE 130 (190)
T ss_dssp HHHHHHHTSCSCEEEEECHHHHHHHG
T ss_pred HHHHHHHhCCCCEEEECCHHHHHHHH
Confidence 66777766677778899999997765
No 61
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=23.45 E-value=40 Score=25.44 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.2
Q ss_pred HHHHHHHhCC-CceEEEcC
Q psy17229 22 SQIDDILQRN-KVPIIVGG 39 (131)
Q Consensus 22 ~~I~~i~~rg-kiPIlVGG 39 (131)
+.|+++.+.. .+|++|||
T Consensus 179 ~~i~~i~~~~~~~Pv~vGg 197 (234)
T 2f6u_A 179 ELVAEVKKVLDKARLFYGG 197 (234)
T ss_dssp HHHHHHHHHCSSSEEEEES
T ss_pred HHHHHHHHhCCCCCEEEEe
Confidence 5778887777 89999998
No 62
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=23.25 E-value=47 Score=24.62 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.6
Q ss_pred HHHHhCCCceEEEcCChH
Q psy17229 25 DDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 25 ~~i~~rgkiPIlVGGTgl 42 (131)
..+++.|.+||+.||+|.
T Consensus 121 ~~lL~~g~IpVi~~~~g~ 138 (252)
T 1z9d_A 121 LRHLEKNRIVVFGAGIGS 138 (252)
T ss_dssp HHHHHTTCEEEEESTTSC
T ss_pred HHHHhCCCEEEEeCCcCC
Confidence 678899999999998874
No 63
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Probab=22.94 E-value=1.2e+02 Score=22.61 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=21.5
Q ss_pred CHHHHHHH--HHHHHHHhCC--CceEEEcCChH
Q psy17229 14 TGGVVCRA--SQIDDILQRN--KVPIIVGGTNY 42 (131)
Q Consensus 14 sv~~f~~~--~~I~~i~~rg--kiPIlVGGTgl 42 (131)
+...|... ++++.|++.+ +.+|+|||.++
T Consensus 138 ~~~~w~~~~~~~~~~IR~~~~~~~~I~v~g~~~ 170 (305)
T 1h1n_A 138 DQTLVLNLNQAAIDGIRSAGATSQYIFVEGNSW 170 (305)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCSSCEEEECTGG
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEccccc
Confidence 56677664 7888888654 58999998764
No 64
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=22.91 E-value=43 Score=24.82 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.6
Q ss_pred HHHHHHHhCCCceEEEcCC
Q psy17229 22 SQIDDILQRNKVPIIVGGT 40 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGT 40 (131)
+.+..+++.|.+||+.||.
T Consensus 116 ~~i~~lL~~g~IpVi~gg~ 134 (244)
T 2brx_A 116 WEAWKAVQLKKIPVMGGTH 134 (244)
T ss_dssp HHHHHHHHTTCBCEECCCS
T ss_pred HHHHHHHhCCCEEEEcCCC
Confidence 4567888999999999864
No 65
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=22.91 E-value=50 Score=23.09 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=16.0
Q ss_pred HHHHHHHh--CCCceEEEcCChH
Q psy17229 22 SQIDDILQ--RNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~--rgkiPIlVGGTgl 42 (131)
+.+++..+ +..+-|..||||.
T Consensus 62 ~~l~~~~~~~~~DlVittGG~g~ 84 (169)
T 1y5e_A 62 QAVLAGYHKEDVDVVLTNGGTGI 84 (169)
T ss_dssp HHHHHHHTCTTCSEEEEECCCSS
T ss_pred HHHHHHHhcCCCCEEEEcCCCCC
Confidence 56666666 6788999999874
No 66
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=22.74 E-value=40 Score=24.21 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCceEEEcCChH
Q psy17229 22 SQIDDILQRNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTgl 42 (131)
+.+++..++..+-|..||||.
T Consensus 54 ~~l~~a~~~~DlVittGG~g~ 74 (172)
T 3kbq_A 54 WAFRVALEVSDLVVSSGGLGP 74 (172)
T ss_dssp HHHHHHHHHCSEEEEESCCSS
T ss_pred HHHHHHHhcCCEEEEcCCCcC
Confidence 556666677899999999874
No 67
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=22.64 E-value=33 Score=27.70 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=13.7
Q ss_pred HHHHHHHhCCCceEEEcCCh
Q psy17229 22 SQIDDILQRNKVPIIVGGTN 41 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGGTg 41 (131)
+.|..++..|.+||+.|..|
T Consensus 119 ~~i~~~l~~g~ipVv~g~~g 138 (421)
T 3ab4_A 119 GRVREALDEGKICIVAGFQG 138 (421)
T ss_dssp HHHHHHHHTTCEEEC-----
T ss_pred HHHHHHHhCCCEEEEeCCcC
Confidence 67888899999999998644
No 68
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=22.53 E-value=50 Score=24.32 Aligned_cols=18 Identities=28% Similarity=0.432 Sum_probs=16.3
Q ss_pred HHHHHHHhCCCceEEEcC
Q psy17229 22 SQIDDILQRNKVPIIVGG 39 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGG 39 (131)
..|+.+++.|.+||+.||
T Consensus 112 ~~i~~ll~~g~ipVi~~~ 129 (251)
T 2ako_A 112 NAIDMMINLGILPIINEN 129 (251)
T ss_dssp HHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHCCCEEEEeCC
Confidence 788999999999999976
No 69
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa}
Probab=22.36 E-value=21 Score=27.32 Aligned_cols=8 Identities=50% Similarity=0.887 Sum_probs=7.1
Q ss_pred EEcCChHH
Q psy17229 36 IVGGTNYY 43 (131)
Q Consensus 36 lVGGTglY 43 (131)
|+||||||
T Consensus 20 iI~GSGl~ 27 (259)
T 3ozb_A 20 IIGGTGLT 27 (259)
T ss_dssp EEECTTST
T ss_pred EEccCCcc
Confidence 67999998
No 70
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=21.65 E-value=57 Score=24.72 Aligned_cols=18 Identities=17% Similarity=0.457 Sum_probs=15.2
Q ss_pred HHHHHHHhCC-CceEEEcC
Q psy17229 22 SQIDDILQRN-KVPIIVGG 39 (131)
Q Consensus 22 ~~I~~i~~rg-kiPIlVGG 39 (131)
+.|+.+.+.. .+|++|||
T Consensus 175 ~~v~~ir~~~~~~pv~vGf 193 (235)
T 3w01_A 175 SKVQAVSEHLTETQLFYGG 193 (235)
T ss_dssp HHHHHHHTTCSSSEEEEES
T ss_pred HHHHHHHHhcCCCCEEEEC
Confidence 6778887776 89999998
No 71
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=21.65 E-value=55 Score=23.16 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=15.8
Q ss_pred HHHHHHHh--CCCceEEEcCChH
Q psy17229 22 SQIDDILQ--RNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~--rgkiPIlVGGTgl 42 (131)
+.+++..+ +..+-|..||||.
T Consensus 58 ~~l~~~~~~~~~DlVittGG~g~ 80 (178)
T 2pbq_A 58 KTLIELADEKGCSLILTTGGTGP 80 (178)
T ss_dssp HHHHHHHHTSCCSEEEEESCCSS
T ss_pred HHHHHHHhcCCCCEEEECCCCCC
Confidence 55666665 6788899999874
No 72
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=21.61 E-value=56 Score=22.71 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=16.0
Q ss_pred HHHHHHHh--CCCceEEEcCChH
Q psy17229 22 SQIDDILQ--RNKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~--rgkiPIlVGGTgl 42 (131)
+.+++..+ +..+-|..||||.
T Consensus 52 ~~l~~~~~~~~~DlVittGG~g~ 74 (164)
T 2is8_A 52 KVLRLWADREGLDLILTNGGTGL 74 (164)
T ss_dssp HHHHHHHHTSCCSEEEEESCCSS
T ss_pred HHHHHHHhcCCCCEEEEcCCCCC
Confidence 55666666 5788999999974
No 73
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=21.44 E-value=51 Score=23.43 Aligned_cols=38 Identities=5% Similarity=-0.010 Sum_probs=25.4
Q ss_pred CHHHHHHHHHhcChhhhh-----hcC-CC--------CcHHHHHHHHHHhhh
Q psy17229 90 DKEEKDDLFKVHDTDKID-----ELE-GE--------NDKRDNKREDLFKVH 127 (131)
Q Consensus 90 g~~~l~~~L~~~DP~~A~-----~i~-~~--------nd~rRv~RALei~~~ 127 (131)
+...|++.|..+||+... ++. +. .|.++|.|++.-||+
T Consensus 35 DG~~L~~iL~~IDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~Yy~ 86 (164)
T 1wix_A 35 NGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITSYYH 86 (164)
T ss_dssp TSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCccccCchHhhhhcccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999998743 220 01 377888998765343
No 74
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=21.41 E-value=33 Score=26.09 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=15.5
Q ss_pred HHHHHHHhCCCceEEEc
Q psy17229 22 SQIDDILQRNKVPIIVG 38 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVG 38 (131)
+.|..+++.|.+||+.|
T Consensus 135 ~~i~~lL~~g~IpVi~~ 151 (276)
T 2ogx_A 135 DQLAIHLSATRAVVGSA 151 (276)
T ss_dssp HHHHHHHHHSSEEEEES
T ss_pred HHHHHHHhCCCEEEEcC
Confidence 66888999999999999
No 75
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=21.25 E-value=99 Score=21.19 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCceEE-EcCChHHHHHHHhcc
Q psy17229 22 SQIDDILQRNKVPII-VGGTNYYIESLLWTI 51 (131)
Q Consensus 22 ~~I~~i~~rgkiPIl-VGGTglYi~sLl~g~ 51 (131)
++++.+.+++.--|+ .||..+|=+.|=.|+
T Consensus 84 ~~l~~l~~~~~~~i~v~GG~~l~~~~l~~~l 114 (168)
T 1cz3_A 84 DVVKFLEGKGYERVAVIGGKTVFTEFLREKL 114 (168)
T ss_dssp HHHHHHHHTTCSEEEEEECHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCEEEEECCHHHHHHHHhCCC
Confidence 567777777654554 489888877766554
No 76
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=21.22 E-value=17 Score=26.83 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=8.6
Q ss_pred EEEcCChHHHH
Q psy17229 35 IIVGGTNYYIE 45 (131)
Q Consensus 35 IlVGGTglYi~ 45 (131)
-|+||||.|=.
T Consensus 114 AITGGTGif~g 124 (188)
T 2brj_A 114 AITGGAGIFEG 124 (188)
T ss_dssp EEEEEEETTTT
T ss_pred eEecCcceEcc
Confidence 47899999843
No 77
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=21.00 E-value=48 Score=24.96 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=14.9
Q ss_pred HHHHHHHhCC-CceEEEcC
Q psy17229 22 SQIDDILQRN-KVPIIVGG 39 (131)
Q Consensus 22 ~~I~~i~~rg-kiPIlVGG 39 (131)
+.|+.+.+.- .+|++|||
T Consensus 169 ~~i~~i~~~~~~~Pv~vGG 187 (228)
T 3vzx_A 169 EAVKKTKAVLETSTLFYGG 187 (228)
T ss_dssp HHHHHHHHHCSSSEEEEES
T ss_pred HHHHHHHHhcCCCCEEEeC
Confidence 6777777766 79999998
No 78
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=20.83 E-value=57 Score=24.86 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.4
Q ss_pred HHHHHHHhCCCceEEEcC
Q psy17229 22 SQIDDILQRNKVPIIVGG 39 (131)
Q Consensus 22 ~~I~~i~~rgkiPIlVGG 39 (131)
+.++.+.+..++||+|||
T Consensus 192 ~~v~~vr~~~~~Pv~vGf 209 (271)
T 1ujp_A 192 DLVRRIKARTALPVAVGF 209 (271)
T ss_dssp HHHHHHHTTCCSCEEEES
T ss_pred HHHHHHHhhcCCCEEEEc
Confidence 577888888899999997
No 79
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=20.52 E-value=57 Score=21.04 Aligned_cols=19 Identities=5% Similarity=-0.015 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcChhhhhhc
Q psy17229 91 KEEKDDLFKVHDTDKIDEL 109 (131)
Q Consensus 91 ~~~l~~~L~~~DP~~A~~i 109 (131)
.+.||-+..+++|+.|.+|
T Consensus 28 GE~LyplV~~~~p~~AgKI 46 (85)
T 1nmr_A 28 GERLYNHIVAINPAAAAKV 46 (85)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCccccchh
Confidence 4679999999999999987
No 80
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=20.39 E-value=63 Score=22.71 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=15.6
Q ss_pred HHHHHHHhC--CCceEEEcCChH
Q psy17229 22 SQIDDILQR--NKVPIIVGGTNY 42 (131)
Q Consensus 22 ~~I~~i~~r--gkiPIlVGGTgl 42 (131)
+.+++..++ ..+-|..||||.
T Consensus 59 ~~l~~a~~~~~~DlVittGG~g~ 81 (172)
T 1mkz_A 59 AQVSAWIASDDVQVVLITGGTGL 81 (172)
T ss_dssp HHHHHHHHSSSCCEEEEESCCSS
T ss_pred HHHHHHHhcCCCCEEEeCCCCCC
Confidence 556666665 678899999874
No 81
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=20.37 E-value=37 Score=24.03 Aligned_cols=22 Identities=18% Similarity=0.242 Sum_probs=16.0
Q ss_pred CCCceEEEcCChHHHHHHHhcc
Q psy17229 30 RNKVPIIVGGTNYYIESLLWTI 51 (131)
Q Consensus 30 rgkiPIlVGGTglYi~sLl~g~ 51 (131)
.|+.-+|+||||+==.++...+
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L 41 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSEL 41 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHH
Confidence 4788899999998666666543
No 82
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}
Probab=20.29 E-value=40 Score=24.44 Aligned_cols=22 Identities=9% Similarity=0.228 Sum_probs=15.4
Q ss_pred CCCceEEEcCChHHHHHHHhcc
Q psy17229 30 RNKVPIIVGGTNYYIESLLWTI 51 (131)
Q Consensus 30 rgkiPIlVGGTglYi~sLl~g~ 51 (131)
.++.-+|+||||+==.+|+..+
T Consensus 5 ~~~~vlVtGatG~iG~~l~~~L 26 (319)
T 4b8w_A 5 QSMRILVTGGSGLVGKAIQKVV 26 (319)
T ss_dssp CCCEEEEETCSSHHHHHHHHHH
T ss_pred cCCeEEEECCCcHHHHHHHHHH
Confidence 4566789999998655555443
No 83
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=20.02 E-value=1.5e+02 Score=19.83 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=21.0
Q ss_pred CccCHHHHHHH--HHHHHHHhCCCceEEEc
Q psy17229 11 DTATGGVVCRA--SQIDDILQRNKVPIIVG 38 (131)
Q Consensus 11 e~ysv~~f~~~--~~I~~i~~rgkiPIlVG 38 (131)
..++...|... .+|+.+.++|..+|+++
T Consensus 77 ~~~~~~~~~~~l~~li~~~~~~~~~vil~~ 106 (190)
T 1ivn_A 77 RGFQPQQTEQTLRQILQDVKAANAEPLLMQ 106 (190)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 34678888875 78889988876666665
Done!