RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17229
(131 letters)
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 53.5 bits (129), Expect = 1e-09
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLW 49
I+DI +R K+PI+VGGT+YY+++L
Sbjct: 84 IEDIHRRGKIPIVVGGTHYYLQTLFN 109
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 51.5 bits (123), Expect = 6e-09
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGE 64
+ +I R K+P++VGG+N +I +LL + + E+G
Sbjct: 123 VSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGS 163
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 45.2 bits (108), Expect = 9e-07
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLL 48
I DI +R KVPII GGT YI+SLL
Sbjct: 89 IKDITRRGKVPIIAGGTGLYIQSLL 113
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 45.2 bits (108), Expect = 1e-06
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLL 48
+ R ++P++VGGT Y ++LL
Sbjct: 87 MAKATARGRIPLLVGGTMLYYKALL 111
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 45.2 bits (108), Expect = 1e-06
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLL 48
I +I +R ++P +VGGT Y+ +++
Sbjct: 85 ITEIHERGRLPFLVGGTGLYVNAVI 109
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 44.8 bits (107), Expect = 1e-06
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESLL 48
+ DI ++P++VGGT Y ++LL
Sbjct: 92 MADITAAGRIPLLVGGTMLYFKALL 116
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis;
HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB:
2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 40.6 bits (95), Expect = 3e-05
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 24 IDDILQRNKVPIIVGGTNYYIESL 47
D + + I+ GG+ + +
Sbjct: 83 EVDWRKSEEGLILEGGSISLLNCM 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.15
Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 43/128 (33%)
Query: 1 MVLIPQFPHLDTATGGVVCRASQIDDILQRNKVPIIV-------GGT----NYYIESLLW 49
V +P+ + G + ++ + + +V G NY
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY------- 1846
Query: 50 TILLDNKTNI-NEQ----GEFTLYDIDKMRNLEHGRDVLEGLWKLDKEEKDDLFKVHDTD 104
N+ N+Q G+ +R L D + + K +K D+ ++ +
Sbjct: 1847 --------NVENQQYVAAGD--------LRAL----DTVTNVLNFIKLQKIDIIELQKSL 1886
Query: 105 KIDELEGE 112
++E+EG
Sbjct: 1887 SLEEVEGH 1894
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 30.5 bits (68), Expect = 0.16
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 12/80 (15%)
Query: 29 QRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVLEGLWK 88
+ K+ I GG+ + SL+ + +D + G LYD+D +
Sbjct: 4 DQIKIAYIGGGSQGWARSLMSDLSIDER----MSGTVALYDLDFEA--------AQKNEV 51
Query: 89 LDKEEKDDLFKVHDTDKIDE 108
+ + ++ + +
Sbjct: 52 IGNHSGNGRWRYEAVSTLKK 71
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 26.9 bits (60), Expect = 2.5
Identities = 5/31 (16%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 31 NKVPIIVGGTNYYIESLLWTILLDNKTNINE 61
+P+I+G T+ E ++ + +++
Sbjct: 323 KHIPLIIGFTDA--ECEIFRRQFEQIDIVSK 351
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase;
beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Length = 401
Score = 26.8 bits (60), Expect = 2.6
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 55 NKTNINEQGEFTLYDIDKM--RNLEHGRDVLEGLWKLDKEEKDDLFKVHDTDKIDELEGE 112
+K +I+E+GE L D + ++ EG W D + ++ V+ + + +
Sbjct: 172 DKISISERGELELTDAINLMAKDHRVKVIEYEGYWM-DIGKPWNIIDVNKWALDNLVFSQ 230
Query: 113 ND 114
N
Sbjct: 231 NL 232
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 25.6 bits (57), Expect = 2.7
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 70 IDKMRNLEHGRDVLEGLWKLDKEEK----DDLFKVHDTD---KIDELEGENDK----RDN 118
IDK+R LE +L + K + DL++ + ++D+L + + RDN
Sbjct: 22 IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 81
Query: 119 KREDL 123
ED+
Sbjct: 82 LAEDI 86
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 26.6 bits (59), Expect = 2.8
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
Query: 29 QRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVLEGLWK 88
V I G + + L+ + N N+Q + T D K+ + L G
Sbjct: 306 NAADVDYIAGTNDM--DGHLFVGMDVPAINSNKQ-DVTEEDFYKLVSGLTVTKGLRGAQA 362
Query: 89 LDKEEKDDLFKVHDTDKI 106
+ + + +
Sbjct: 363 TYEVYTEPWAQDSSQETR 380
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid,
lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB:
3mwe_A*
Length = 425
Score = 25.3 bits (56), Expect = 7.0
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 16 GVVCRASQIDDILQRNKVPIIV--GGTNY 42
G+V L+ ++V I V GG NY
Sbjct: 356 GIVRAIRDYQGPLKEHEVTIFVRRGGPNY 384
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 25.1 bits (54), Expect = 8.1
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 32 KVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVLEGLWKLDK 91
+ I GG+ + +L + + I + LYD DK R + + +
Sbjct: 30 SIVIAGGGSTFTPGIVLMLLDHLEEFPI---RKLKLYDNDKER-QDRIAGACD---VFIR 82
Query: 92 EEKDDLFKVHDTDKIDELEG 111
E+ D+ TD +
Sbjct: 83 EKAPDIEFAATTDPEEAFTD 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.140 0.413
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,009,887
Number of extensions: 111777
Number of successful extensions: 341
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 48
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)