RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17229
         (131 letters)



>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA
           {Bacillus subtilis [TaxId: 1423]}
          Length = 167

 Score = 30.0 bits (67), Expect = 0.060
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 29  QRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDVLEGLWK 88
           +   + I  GG+ +    +L  +    +  I    +  LYD DK R              
Sbjct: 2   KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPI---RKLKLYDNDKERQDRIAGA----CDV 54

Query: 89  LDKEEKDDLFKVHDTDKIDELEG 111
             +E+  D+     TD  +    
Sbjct: 55  FIREKAPDIEFAATTDPEEAFTD 77


>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 268

 Score = 25.0 bits (54), Expect = 3.2
 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 9/105 (8%)

Query: 23  QIDDILQRNKVPIIVGGTNYYIESLLWTILLDNKTNINEQGEFTLYDIDKMRNLEHGRDV 82
           +  + L+  K  I   G+      L+  ++L+N   +  + +       +    E     
Sbjct: 170 KYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEVEEKNI-- 227

Query: 83  LEGLW-KLDKEEKDDLFKVHDTDKIDELEGENDKRDNKREDLFKV 126
           LE +   + +E+  +L +       +EL+ + +  D   E L  V
Sbjct: 228 LEKVKAAMTEEDLAELAR-----ATEELKLKQETPDPP-EALRCV 266


>d1v7mv_ a.26.1.2 (V:) Thrombopoietin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 145

 Score = 24.0 bits (52), Expect = 5.3
 Identities = 5/25 (20%), Positives = 10/25 (40%)

Query: 65 FTLYDIDKMRNLEHGRDVLEGLWKL 89
          F+L +          +D+L  +  L
Sbjct: 40 FSLGEWKTQMEETKAQDILGAVTLL 64


>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
           40051]}
          Length = 845

 Score = 24.4 bits (53), Expect = 5.4
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 22/99 (22%)

Query: 48  LWTILLDNKTNINEQGEFTLYDI-----DKMRNLEH---GRDVLEGLWKLDKEEKDDLFK 99
            ++ ++     I  +G F L+DI       M   E    G +    L  L  E +  +  
Sbjct: 70  FYSTIIKKVRFIRGKGSFILHDIPARDHRGMEVAEPEVLGVEFKNVLPVLTAEHRAMI-- 127

Query: 100 VHDTDKIDELEGENDKRDNKREDLF---------KVHNA 129
               + +D    EN     +  D+F         +++N 
Sbjct: 128 ---QNALDGSIIENGNVATRDVDVFIGACSEPIYRIYNR 163


>d1eera_ a.26.1.2 (A:) Erythropoietin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 166

 Score = 23.7 bits (51), Expect = 6.7
 Identities = 6/25 (24%), Positives = 10/25 (40%)

Query: 65 FTLYDIDKMRNLEHGRDVLEGLWKL 89
             Y   +M   +   +V +GL  L
Sbjct: 46 VNFYAWKRMEVGQQAVEVWQGLALL 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.140    0.413 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 493,604
Number of extensions: 21567
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 14
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.4 bits)