BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1723
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R9G3|UBE4A_PONAB Ubiquitin conjugation factor E4 A OS=Pongo abelii GN=UBE4A PE=2 SV=2
Length = 1066
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 149/239 (62%), Gaps = 18/239 (7%)
Query: 19 ESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFL 78
E+ R+ ++G LQ G +ARF NI+ NETI TL +LTSEI+S+F H + +RI +MLNYFL
Sbjct: 827 EARREKEAG-LQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFL 885
Query: 79 FHLVGPKMRNFKTSRRSP---GKQEGVGSIPAERKLKLNISTSPYYYFSL-----SLPPS 130
HLVGPKM K S Q+ V I + LN+ + ++ S P+
Sbjct: 886 QHLVGPKMGALKVKDFSEFDFKPQQLVSDICT---IYLNLGDEENFCATVPKDGRSYSPT 942
Query: 131 LL-----YLARIGG-ASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIML 184
L L +I ++I +A ++ L Q +E A A DE+LDPIM+T+M
Sbjct: 943 LFAQTVRVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMC 1002
Query: 185 EPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQK 243
+PV LPSSR T+D+STIARHLLSDQTDPFNRSPLTM+Q+ PNT+L+ +IQ W+ + +Q+
Sbjct: 1003 DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 1061
>sp|Q14139|UBE4A_HUMAN Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1 SV=2
Length = 1066
Score = 185 bits (469), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 149/239 (62%), Gaps = 18/239 (7%)
Query: 19 ESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFL 78
E+ R+ ++G LQ G +ARF NI+ NETI TL +LTSEI+S+F H + +RI +MLNYFL
Sbjct: 827 EARREKEAG-LQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFL 885
Query: 79 FHLVGPKMRNFKTSRRSP---GKQEGVGSIPAERKLKLNISTSPYYYFSL-----SLPPS 130
HLVGPKM K S Q+ V I + LN+ + ++ S P+
Sbjct: 886 QHLVGPKMGALKVKDFSEFDFKPQQLVSDICT---IYLNLGDEENFCATVPKDGRSYSPT 942
Query: 131 LL-----YLARIGG-ASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIML 184
L L +I ++I +A ++ L Q +E A A DE+LDPIM+T+M
Sbjct: 943 LFAQTVRVLKKINKPGNMIMAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMC 1002
Query: 185 EPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQK 243
+PV LPSSR T+D+STIARHLLSDQTDPFNRSPLTM+Q+ PNT+L+ +IQ W+ + +Q+
Sbjct: 1003 DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 1061
>sp|A5PKG6|UBE4A_BOVIN Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1
Length = 1067
Score = 184 bits (467), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 149/239 (62%), Gaps = 18/239 (7%)
Query: 19 ESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFL 78
E+ R+ ++G LQ G +ARF NI+ NETI TL +LTSEI+S+F H + +RI +MLNYFL
Sbjct: 827 EARREKEAG-LQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFL 885
Query: 79 FHLVGPKMRNFKTSRRSP---GKQEGVGSIPAERKLKLNISTSPYYYFSL-----SLPPS 130
HLVGPKM K S Q+ V I + LN+ + ++ S P+
Sbjct: 886 QHLVGPKMGALKVKDFSEFDFKPQQLVSDICT---IYLNLGDEENFCATVPKDGRSYSPT 942
Query: 131 LL-----YLARIGG-ASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIML 184
L L +I ++I +A ++ L Q +E A A DE+LDPIM+T+M
Sbjct: 943 LFAQTVRVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMS 1002
Query: 185 EPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQK 243
+PV LPSSR T+D+STIARHLLSDQTDPFNRSPLTM+Q+ PNT+L+ +IQ W+ + +Q+
Sbjct: 1003 DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 1061
>sp|Q6P7A2|UBE4A_RAT Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a PE=2
SV=1
Length = 1066
Score = 182 bits (463), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 148/239 (61%), Gaps = 18/239 (7%)
Query: 19 ESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFL 78
E+ R+ ++G LQ G +ARF NI+ NETI TL +LTSEI+S+F H + +RI +MLNYFL
Sbjct: 827 EARREKEAG-LQMFGQLARFHNIMSNETIGTLSFLTSEIKSLFVHPFLAERIISMLNYFL 885
Query: 79 FHLVGPKMRNFKTSRRSP---GKQEGVGSIPAERKLKLNISTSPYYYFSL-----SLPPS 130
HLVGPKM K S Q+ V I + LN+ + ++ S P+
Sbjct: 886 QHLVGPKMGALKVKDFSEFDFKPQQLVSDICT---IYLNLGDEENFCATVPKDGRSYSPT 942
Query: 131 LL-----YLARIGG-ASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIML 184
L L +I ++I +A ++ L Q +E A A DE+LDPIM+T+M
Sbjct: 943 LFAQTVRVLKKINKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMS 1002
Query: 185 EPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQK 243
+PV LPSSR T+D STIARHLLSDQTDPFNRSPLTM+Q+ PNT+L+ +IQ W+ + +Q+
Sbjct: 1003 DPVVLPSSRVTVDGSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 1061
>sp|Q9HE05|UFD2_SCHPO Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ufd2 PE=2 SV=1
Length = 1010
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 110/214 (51%), Gaps = 12/214 (5%)
Query: 42 LGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMRNFKTSRRSPGKQEG 101
LGNETI L+ TS I FC +VDR+AAMLNY L L GPK N K +
Sbjct: 791 LGNETIFMLKLFTSSIPKAFCAVEIVDRLAAMLNYNLQALCGPKCSNLKVEDPTKYHFNA 850
Query: 102 VGSIPAERKLKLNISTSPYYYFSLS------------LPPSLLYLARIGGASLIPDLRRV 149
+ + LN+ P + +++ S++ + + I ++
Sbjct: 851 KTLLSIIFDVYLNLCNEPAFVEAVAHDGRSYSKEIFERATSIMTKHNLKSSFDIEAIKEF 910
Query: 150 AVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ 209
VE Q ++E + PD +LDP+M TIM +PV LP S ++D+STI HLLSD
Sbjct: 911 VNRVEAFRLQEATEEEDMGDIPDYFLDPLMFTIMKDPVVLPRSGISIDRSTIKAHLLSDA 970
Query: 210 TDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQK 243
TDPFNR+PLT++ V PN L+ +I +++ R K
Sbjct: 971 TDPFNRTPLTLDDVTPNDTLREEINTFLKSKRNK 1004
>sp|Q9LF41|UBE4_ARATH Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana
GN=PUB1 PE=1 SV=1
Length = 1038
Score = 117 bits (292), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 35 MARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMRNFKTSRR 94
+ R D L NE + L + + EI + F MV+R+A MLNYFL LVGP+ ++ S +
Sbjct: 792 IVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVANMLNYFLLQLVGPQRKSL--SLK 849
Query: 95 SPGKQEGVGS----------IPAERKLKLNI-----STSPYYYFSLSLPPSLLYLARIGG 139
P K E + R +NI S+ Y L RIG
Sbjct: 850 DPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGAISSDGRSYNEQLFNAGADVLRRIGE 909
Query: 140 -ASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDK 198
+I + + + ++ EA L PDE+LDPI T+M +PV LPSSR T+D+
Sbjct: 910 EGRIIQEFMELGTKAKAAASEALDAEAALGEIPDEFLDPIQYTLMRDPVILPSSRITVDR 969
Query: 199 STIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQK 243
I RHLLSD DPFNR+ LT + +IP+ +L+ +I ++++ + K
Sbjct: 970 PIIQRHLLSDNHDPFNRAHLTSDMLIPDIELKAKIDEFVKSHQSK 1014
>sp|P54860|UFD2_YEAST E4 ubiquitin-protein ligase UFD2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UFD2 PE=1 SV=3
Length = 961
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 13/216 (6%)
Query: 42 LGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMRNFKTSRRSPGKQEG 101
L ++++ E + +I + F +V R+A+MLNY L LVGPK K
Sbjct: 740 LADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLESLVGPKCGELKVKDPQSYSFNP 799
Query: 102 VGSIPAERKLKLNISTSPYYYFSLS----------LPPSLLYLARIGGASLIPDLRRVAV 151
+ A + +N+S + +++ ++ L R G + + ++
Sbjct: 800 KDLLKALTTVYINLSEQSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLN 859
Query: 152 LVEKLGAQLQSDEAL---LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD 208
K Q ++DE PDE+LDP+M TIM +PV LP+S+ +D+STI HLLSD
Sbjct: 860 FANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD 919
Query: 209 QTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQKS 244
TDPFNR PL +E V PN +L+ +I + +Q ++++
Sbjct: 920 STDPFNRMPLKLEDVTPNEELRQKILCFKKQKKEEA 955
>sp|Q9ES00|UBE4B_MOUSE Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=3
Length = 1173
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 12/209 (5%)
Query: 42 LGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMRNFKTSRRSPGKQEG 101
L ET+ LT +++ F + R+AAMLN+ L L GPK R+ K E
Sbjct: 960 LATETVDMFHLLTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEP 1019
Query: 102 VGSIPAERKLKLNISTSPYYY--------FSLSLPPSLLYLARIGGAS---LIPDLRRVA 150
+ + L + + + +S L ++ R G I + +A
Sbjct: 1020 KKLLDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLA 1079
Query: 151 VLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQT 210
VE++ A+ E + APDE+ DP+M+T+M +PV LPS +D+S I RHLL+ T
Sbjct: 1080 EKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSG-TVMDRSIILRHLLNSPT 1138
Query: 211 DPFNRSPLTMEQVIPNTQLQTQIQDWIRQ 239
DPFNR LT + P +L+ QIQ W+R+
Sbjct: 1139 DPFNRQMLTESMLEPVPELKEQIQAWMRE 1167
>sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1
Length = 1302
Score = 97.4 bits (241), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 102/209 (48%), Gaps = 12/209 (5%)
Query: 42 LGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMRNFKTSRRSPGKQEG 101
L ET+ LT +++ F + R+AAMLN+ L L GPK R+ K E
Sbjct: 1089 LATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEP 1148
Query: 102 VGSIPAERKLKLNISTSPYYY--------FSLSLPPSLLYLARIGGAS---LIPDLRRVA 150
+ + L + + + +S L ++ R G I + +A
Sbjct: 1149 KKLLDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLA 1208
Query: 151 VLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQT 210
VE++ A+ E + APDE+ DP+M+T+M +PV LPS +D+S I RHLL+ T
Sbjct: 1209 EKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSG-TIMDRSIILRHLLNSPT 1267
Query: 211 DPFNRSPLTMEQVIPNTQLQTQIQDWIRQ 239
DPFNR LT + P +L+ QIQ W+R+
Sbjct: 1268 DPFNRQTLTESMLEPVPELKEQIQAWMRE 1296
>sp|Q09349|UBE4_CAEEL Probable ubiquitin conjugation factor E4 OS=Caenorhabditis elegans
GN=ufd-2 PE=2 SV=1
Length = 980
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 12/186 (6%)
Query: 68 DRIAAMLNYFLFHLVGPKMRNFKTSR-RSPGKQ-EGVGSIPAERKLKLNISTSPYY--YF 123
+R+AAMLN+ L L+G K K RS G + S+ LKLN+ Y Y
Sbjct: 793 ERLAAMLNHNLSQLIGSKASELKVKDPRSYGWEPREFVSLLISIYLKLNMPAFVKYIAYD 852
Query: 124 SLSLPPSLLYLA-------RIGGASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLD 176
+ P + A I G S + +A V+K E P+E+ D
Sbjct: 853 ERTYSPEFFHNAIECMRKNSIVGFSQLESFEHLAEDVKKEYEAKAELEEEYDDVPEEFKD 912
Query: 177 PIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDW 236
PIM+ IM++PV LPS +D++ I RHLLS +PFNR+PL+ ++ P+++L+ +IQ+W
Sbjct: 913 PIMDAIMVDPVKLPSG-HVMDRAVIERHLLSTPNNPFNRAPLSHNELSPDSELKAKIQEW 971
Query: 237 IRQCRQ 242
I Q R
Sbjct: 972 ICQKRN 977
>sp|Q8S8S7|PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34
PE=3 SV=1
Length = 801
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 140 ASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKS 199
+ +IP L+R LVE ++++ + + L AP Y PI+ IM EP + + T ++
Sbjct: 699 SEVIPVLKR---LVETANSKVKKEGSNLR-APSHYFCPILREIMEEP-EIAADGFTYERK 753
Query: 200 TIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCR 241
I L P R L ++ PN L++ I+DW + R
Sbjct: 754 AILAWLEKHNISPVTRQKLDHFKLTPNHTLRSAIRDWKSRVR 795
>sp|Q9UNE7|CHIP_HUMAN E3 ubiquitin-protein ligase CHIP OS=Homo sapiens GN=STUB1 PE=1 SV=2
Length = 303
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS-DQTDPFNRSPLTMEQVIPNTQL 229
PD I +M EP PS T D+ I HL DP RSPLT EQ+IPN +
Sbjct: 228 PDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAM 286
Query: 230 QTQIQDWI 237
+ I +I
Sbjct: 287 KEVIDAFI 294
>sp|Q9WUD1|CHIP_MOUSE STIP1 homology and U box-containing protein 1 OS=Mus musculus
GN=Stub1 PE=1 SV=1
Length = 304
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS-DQTDPFNRSPLTMEQVIPNTQL 229
PD I +M EP PS T D+ I HL DP RSPLT EQ+IPN +
Sbjct: 229 PDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAM 287
Query: 230 QTQIQDWI 237
+ I +I
Sbjct: 288 KEVIDAFI 295
>sp|Q5ZHY5|CHIP_CHICK STIP1 homology and U box-containing protein 1 OS=Gallus gallus
GN=STUB1 PE=2 SV=1
Length = 314
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS-DQTDPFNRSPLTMEQVIPNTQL 229
PD I +M EP PS T D+ I HL DP RSPLT +Q+IPN +
Sbjct: 239 PDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 297
Query: 230 QTQIQDWI 237
+ I +I
Sbjct: 298 KEVIDAFI 305
>sp|Q3E9F7|PUB46_ARATH Putative U-box domain-containing protein 46 OS=Arabidopsis thaliana
GN=PUB46 PE=3 SV=1
Length = 458
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 138 GGASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLD 197
G I + R+ + K+ +++ + P E++ + NTIM+EPV + S QT +
Sbjct: 40 GVVKAIDEAVRILTCLRKVESKIPESDISPVEVPKEFICTLSNTIMIEPVIIASG-QTYE 98
Query: 198 KSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDW 236
K I L ++T P + L+ IPN + I W
Sbjct: 99 KRYITEWLKHERTCPKTKQVLSHRLWIPNHLISDLITQW 137
>sp|Q3E9F6|PUB47_ARATH Putative U-box domain-containing protein 47 OS=Arabidopsis thaliana
GN=PUB47 PE=3 SV=1
Length = 445
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQ 230
P E++ + N IM+EP+ L +S QT +KS I L ++T P + L +IPN +
Sbjct: 66 PKEFICTLSNKIMIEPM-LIASGQTFEKSYILEWLKHERTCPRTKQVLYHRFMIPNHLIN 124
Query: 231 TQIQDW 236
I++W
Sbjct: 125 EVIKEW 130
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35
PE=1 SV=2
Length = 835
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQ 230
P ++ P++ +M EP + + T D+ I L T P SPL + ++PN L
Sbjct: 767 PTHFICPLLKDVMNEPC-VAADGYTYDRHAIEEWLKEHNTSPMTDSPLHSKNLLPNYTLY 825
Query: 231 TQIQDW 236
T I +W
Sbjct: 826 TAIMEW 831
>sp|O94941|RNF37_HUMAN RING finger protein 37 OS=Homo sapiens GN=UBOX5 PE=2 SV=1
Length = 541
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 158 AQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQT------D 211
+ LQ ++ P+E+LDPI IM P+ LPS + +D+ST+ + S+ T D
Sbjct: 247 SSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGK-VIDQSTLEKCNRSEATWGRVPSD 305
Query: 212 PFNRSPLT-MEQVIPNTQLQTQIQDWIRQ 239
PF T Q +P+ L+ +I ++ Q
Sbjct: 306 PFTGVAFTPHSQPLPHPSLKARIDHFLLQ 334
>sp|Q925F4|RNF37_MOUSE RING finger protein 37 OS=Mus musculus GN=Ubox5 PE=2 SV=2
Length = 539
Score = 38.1 bits (87), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 160 LQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ------TDPF 213
LQ + + P+E+LDPI IM P+ LPS + +D+ST+ + LS+ +DPF
Sbjct: 249 LQDMSEVESDVPEEFLDPITLEIMPCPMLLPSGK-VIDQSTLEKCNLSEAAWGRVPSDPF 307
Query: 214 NRSPLTME-QVIPNTQLQTQIQDWIRQ 239
T + Q +P+ L+ +I ++ Q
Sbjct: 308 TGLAFTPQSQPLPHPSLKARIDRFLLQ 334
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica
GN=PUB12 PE=2 SV=1
Length = 611
Score = 37.7 bits (86), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD-QTDPFNRSPLTMEQVIPNTQL 229
PDE+ PI +M +PV + SS QT ++S I + L S +T P + PL+ + PN L
Sbjct: 229 PDEFRCPISLELMQDPVIV-SSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVL 287
Query: 230 QTQIQDW 236
++ I W
Sbjct: 288 KSLISQW 294
>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52
PE=2 SV=1
Length = 845
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 142 LIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTI 201
+IP L R+ + +K L + G P ++ P++ +M EP + + T D+ I
Sbjct: 750 IIPALERLRKVADKAQNLLSRTPS---GPPSHFICPLLKGVMNEPC-VAADGYTYDREAI 805
Query: 202 ARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDW 236
L T P PL + +I N L + I +W
Sbjct: 806 EEWLRQKDTSPVTNLPLPNKNLIANYTLYSAIMEW 840
>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25
PE=2 SV=1
Length = 421
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIAR--HLLSDQTDPFNRSPLTMEQVIPNTQ 228
P + PI +M +PVT+ + QT D+++I + ++ T P R+PL+ +IPN
Sbjct: 15 PYHFRCPISLELMQDPVTVCTG-QTYDRASIESWVSIGNNTTCPVTRAPLSDFTLIPNHT 73
Query: 229 LQTQIQDW 236
L+ IQ+W
Sbjct: 74 LRRLIQEW 81
>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3
PE=2 SV=2
Length = 760
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 177 PIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD-QTDPFNRSPLTMEQVIPNTQLQTQIQD 235
P+ +ML+PV + S QT D+++I + L + P R LT +++IPN ++ I
Sbjct: 245 PLSTELMLDPVIVASG-QTFDRTSIKKWLDNGLAVCPRTRQVLTHQELIPNYTVKAMIAS 303
Query: 236 WIRQCR 241
W+ R
Sbjct: 304 WLEANR 309
>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26
PE=2 SV=1
Length = 421
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHL-LSDQTDPFNRSPLTMEQVIPNTQL 229
P + PI +M +PVT+ S+ QT D+++I + + + T P R L+ +IPN L
Sbjct: 15 PYHFRCPISLDLMSDPVTI-STGQTYDRTSIDSWIAMGNTTCPVTRVALSDFTLIPNHTL 73
Query: 230 QTQIQDW 236
+ IQ+W
Sbjct: 74 RRLIQEW 80
>sp|A0AUS0|WSDU1_DANRE WD repeat, SAM and U-box domain-containing protein 1 OS=Danio rerio
GN=wdsub1 PE=2 SV=1
Length = 487
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 169 GAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQ 228
G PDE+L PI IM +PV ++ A ++T P PL + PN
Sbjct: 416 GTPDEFLCPITREIMKDPVIAADGYSYEREAIEAWISTKNRTSPMTNLPLQTTLLTPNRT 475
Query: 229 LQTQIQDW 236
L+ I W
Sbjct: 476 LKMAIFRW 483
>sp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9
PE=1 SV=1
Length = 460
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 170 APDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS-DQTDPFNRSPLTMEQVIPNTQ 228
P+E+ P+ N +M +PV L S QT DK I + L S ++T P + L + PN
Sbjct: 74 CPEEFRCPLSNELMRDPVVLASG-QTYDKLFIQKWLSSGNRTCPKTQQVLPHTALTPNLL 132
Query: 229 LQTQIQDWIRQ 239
++ I W ++
Sbjct: 133 IREMISKWCKK 143
>sp|Q9LU47|PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana
GN=PUB53 PE=3 SV=1
Length = 819
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQ 230
P + P++ +M EP + + T D+ I + + +T P SPL ++PN L
Sbjct: 750 PSHFFCPLLKDVMKEPC-IAADGYTYDRRAIEEWMENHRTSPVTNSPLQNVNLLPNHTLY 808
Query: 231 TQIQDW 236
I +W
Sbjct: 809 AAIVEW 814
>sp|Q9FL17|PUB40_ARATH U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40
PE=2 SV=2
Length = 550
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQ 230
P E+L PI ++M +P+ + S IA L P P VIPN L+
Sbjct: 59 PAEFLCPISGSLMADPIIVSSGHSYERACVIACKTLGFTPTP----PPDFSTVIPNLALK 114
Query: 231 TQIQDWI-RQC 240
+ I W R+C
Sbjct: 115 SAIHSWCERRC 125
>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20
PE=2 SV=1
Length = 431
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD-QTDPFNRSPLTMEQVIPNTQL 229
P ++ PI +M +PV + S T D+ I + S QT P + LT + IPN +
Sbjct: 34 PSQFQCPISYELMKDPVIIASG-ITYDRENIEKWFESGYQTCPVTNTVLTSLEQIPNHTI 92
Query: 230 QTQIQDW 236
+ IQ W
Sbjct: 93 RRMIQGW 99
>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15
PE=2 SV=2
Length = 660
Score = 33.9 bits (76), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHL-LSDQTDPFNRSPLTMEQVIPNTQL 229
P E+L PI IML+PV + + QT +K +I + +T P R L + PN L
Sbjct: 291 PHEFLCPITLEIMLDPVIIATG-QTYEKESIQKWFDAGHKTCPKTRQELDHLSLAPNFAL 349
Query: 230 QTQIQDWIRQ 239
+ I W +
Sbjct: 350 KNLIMQWCEK 359
>sp|Q08E38|PRP19_BOVIN Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1
Length = 504
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 178 IMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVI 224
I N + P P S ++ I +++ + TDP N PL+ EQ+I
Sbjct: 7 ISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLI 53
>sp|Q9UMS4|PRP19_HUMAN Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1
Length = 504
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 178 IMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVI 224
I N + P P S ++ I +++ + TDP N PL+ EQ+I
Sbjct: 7 ISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLI 53
>sp|Q9JMJ4|PRP19_RAT Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2
SV=2
Length = 504
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 178 IMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVI 224
I N + P P S ++ I +++ + TDP N PL+ EQ+I
Sbjct: 7 ISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLI 53
>sp|Q99KP6|PRP19_MOUSE Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1
Length = 504
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 178 IMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVI 224
I N + P P S ++ I +++ + TDP N PL+ EQ+I
Sbjct: 7 ISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLI 53
>sp|Q5ZMA2|PRP19_CHICK Pre-mRNA-processing factor 19 OS=Gallus gallus GN=PRPF19 PE=1 SV=1
Length = 505
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 178 IMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVI 224
I N + P P S ++ I +++ + TDP N PL+ EQ+I
Sbjct: 7 ISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLI 53
>sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidioides immitis (strain RS)
GN=DRS1 PE=3 SV=1
Length = 840
Score = 33.5 bits (75), Expect = 1.5, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 116 STSPYYYFSLSLPPSLLYLARIGGASLIPDLRRVAVLVEKLGAQLQSDEALLAGAPDEYL 175
S S + F+LS P L LA +G ++ P ++R A+ V LG L +G ++
Sbjct: 317 SNSTFQNFNLS-RPILRGLAAVGFSAPTP-IQRKAIPVGLLGKDLVGGAVTGSGKTAAFI 374
Query: 176 DPIMNTIMLEPVTLPSSR 193
PI+ ++ P +P+SR
Sbjct: 375 IPILERLLYRPRKVPTSR 392
>sp|Q6PDB4|ZN880_HUMAN Zinc finger protein 880 OS=Homo sapiens GN=ZNF880 PE=2 SV=2
Length = 577
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 1 MFCLRLTVTTTLEFHVGHESYRKSDSGFLQHIGMMARFDNILGNETIHTLE--YLTSEIR 58
+F RL+++ FH G + YR + G R N+ + IHT E Y SE
Sbjct: 444 VFRHRLSLSNHQRFHTGEKPYRCDECG-----KDFTRNSNLANHHRIHTGEKPYKCSECH 498
Query: 59 SIFCHSTMVDR 69
+F H++ + R
Sbjct: 499 KVFSHNSHLAR 509
>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22
PE=1 SV=1
Length = 435
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTD--PFNRSPLTMEQVIPNTQ 228
P +L PI IM +PV + S+ T D+ +I + L S + + P + +T + PN
Sbjct: 8 PSFFLCPISLDIMKDPVIV-STGITYDRESIEKWLFSGKKNSCPVTKQVITETDLTPNHT 66
Query: 229 LQTQIQDW 236
L+ IQ W
Sbjct: 67 LRRLIQSW 74
>sp|Q9D0I6|WSDU1_MOUSE WD repeat, SAM and U-box domain-containing protein 1 OS=Mus
musculus GN=Wdsub1 PE=2 SV=1
Length = 474
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 131 LLYLARIGGASLIPDLR------RVAVL--VEKLGAQLQSDEALLAGAPDEYLDPIMNTI 182
LL+L + SL DL+ R VL +E+L A++ S L +G PDE++ PI +
Sbjct: 361 LLHLTK---ESLAGDLKIESLGLRSKVLRSIEELRAKMDS---LSSGIPDEFICPITREL 414
Query: 183 MLEPVTLPSSRQTLDKSTIARHLLSDQ-TDPFNRSPLTMEQVIPNTQLQTQIQDWIR 238
M +PV + S + ++ + + + T P L + PN L+ I W+
Sbjct: 415 MKDPV-IASDGYSYEREAMESWIHKKKRTSPMTNLALPSLVLTPNRTLKMAINRWLE 470
>sp|P22579|SIN3_YEAST Transcriptional regulatory protein SIN3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SIN3 PE=1 SV=2
Length = 1536
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 16 VGHESYRKSDSGFLQHIGMMARFDNILGNETIHTLE-YLTSEIRSIFCHSTMVDRIAAM 73
VGH + DSGF+ H E H + Y+ S +R+I C T+V++I M
Sbjct: 783 VGHPVWASEDSGFIAHRKNQYEETLFKIEEERHEYDFYIESNLRTIQCLETIVNKIENM 841
>sp|Q8N9V3|WSDU1_HUMAN WD repeat, SAM and U-box domain-containing protein 1 OS=Homo
sapiens GN=WDSUB1 PE=1 SV=3
Length = 476
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 141 SLIPDLR------RVAVL--VEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSS 192
SL DL+ R VL +E+L +++S L +G PDE++ PI +M +PV + S
Sbjct: 370 SLADDLKIESLGLRSKVLRKIEELRTKVKS---LSSGIPDEFICPITRELMKDPV-IASD 425
Query: 193 RQTLDKSTIARHLLSDQ-TDPFNRSPLTMEQVIPNTQLQTQIQDWIR 238
+ +K + + + T P L + PN L+ I W+
Sbjct: 426 GYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWLE 472
>sp|Q94A51|PUB32_ARATH U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32
PE=2 SV=1
Length = 805
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTME--QVIPNTQ 228
P YL PI +M +P+ + + T + I R L++ D + L ME +IPN
Sbjct: 736 PSHYLCPIFQEVMKDPL-IAADGFTYEAEAI-REWLANGHDTSPMTNLKMEDCNLIPNHA 793
Query: 229 LQTQIQDWIRQ 239
L IQDW Q
Sbjct: 794 LHLAIQDWQNQ 804
>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica
GN=SPL11 PE=1 SV=2
Length = 694
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD-QTDPFNRSPLTMEQVIPNTQL 229
PDE+ PI +M +PV + S+ QT +++ I + + S T P + ++ + PN L
Sbjct: 274 PDEFRCPISLELMKDPVIV-STGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVL 332
Query: 230 QTQIQDW 236
++ I W
Sbjct: 333 RSLISQW 339
>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1
SV=2
Length = 694
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD-QTDPFNRSPLTMEQVIPNTQL 229
PDE+ PI +M +PV + S+ QT +++ I + + S T P + ++ + PN L
Sbjct: 274 PDEFRCPISLELMKDPVIV-STGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVL 332
Query: 230 QTQIQDW 236
++ I W
Sbjct: 333 RSLISQW 339
>sp|B2HP72|UVRC_MYCMM UvrABC system protein C OS=Mycobacterium marinum (strain ATCC
BAA-535 / M) GN=uvrC PE=3 SV=1
Length = 647
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 144 PDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTL 196
PD+ LVE+ AQ D+A L GA DE ++P+ +++ LPS+ L
Sbjct: 295 PDVSVEEQLVEQFLAQFYGDQAELGGAADESVNPVPREVLVP--CLPSNADQL 345
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37
PE=2 SV=1
Length = 400
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 147 RRVAVL-VEKLGAQL-QSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARH 204
R +A++ VE+L ++ +SDE AP ++ PI +M +P L + T + I+
Sbjct: 302 RDIAIIEVEELRKEVSRSDEH--REAPQYFICPISLEVMKDP-QLAADGFTYEAEAISTW 358
Query: 205 LLSD-QTDPFNRSPLTMEQVIPNTQLQTQIQDWI 237
L +T P + L +++PN L++ IQ+W+
Sbjct: 359 LQGGHETSPMTNTKLHHTKLVPNLALRSAIQEWL 392
>sp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51
PE=2 SV=2
Length = 796
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 169 GAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQ 228
AP + PI +M P + S T +K I L + P P + ++PN
Sbjct: 724 NAPTHFYCPITKDVMENPC-VASDGYTYEKRAIKEWLQKNHKSPMTDLPFPSDSLLPNHS 782
Query: 229 LQTQIQDWIRQ 239
L + I++W Q
Sbjct: 783 LLSAIKEWRSQ 793
>sp|Q5FVN8|WSDU1_RAT WD repeat, SAM and U-box domain-containing protein 1 OS=Rattus
norvegicus GN=Wdsub1 PE=2 SV=1
Length = 476
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 164 EALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ-TDPFNRSPLTMEQ 222
E+L +G PDE++ PI +M +PV + S + ++ + + + T P L
Sbjct: 398 ESLSSGIPDEFICPITRELMKDPV-IASDGYSYEREAMESWIHKKKRTSPMTNLALPSLV 456
Query: 223 VIPNTQLQTQIQDWIR 238
+ PN L+ I W+
Sbjct: 457 LTPNRTLKMAINRWLE 472
>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23
PE=1 SV=1
Length = 411
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTD--PFNRSPLTMEQVIPNTQ 228
P +L PI IM +PV + S+ T D+ +I + L + + + P + +T + PN
Sbjct: 13 PPFFLCPISLEIMKDPVIV-STGITYDRDSIEKWLFAGKKNSCPVTKQDITDADLTPNHT 71
Query: 229 LQTQIQDW 236
L+ IQ W
Sbjct: 72 LRRLIQSW 79
>sp|Q5B6T1|MSH3_EMENI DNA mismatch repair protein msh3 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=msh3
PE=3 SV=2
Length = 1105
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 50 LEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMRN--FKTSRRSPGKQEG------ 101
L+Y+ IRS+ T ++AM++ F ++RN + S G E
Sbjct: 975 LDYMVRSIRSLTLFITHYQHLSAMVHSF----PDGELRNVHMRFSESGTGADEDITFLYE 1030
Query: 102 VGSIPAERKLKLNISTSPYYYFSLSLPPSLLYLARIGGASLIPDL--RRVAVLVEKLGAQ 159
+G A R LN++ +LP LL +A+ A L + RR+A V +GA
Sbjct: 1031 IGEGVAHRSYGLNVARLA------NLPAPLLEMAKQKSAELEEKIRRRRLAGFVAAVGAV 1084
Query: 160 LQSDEA 165
+QS++A
Sbjct: 1085 VQSNQA 1090
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,025,947
Number of Sequences: 539616
Number of extensions: 3371290
Number of successful extensions: 7629
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 7586
Number of HSP's gapped (non-prelim): 69
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)