Query psy1723
Match_columns 246
No_of_seqs 219 out of 1060
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 16:38:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2042|consensus 100.0 5.6E-56 1.2E-60 449.6 14.6 234 5-245 690-942 (943)
2 COG5113 UFD2 Ubiquitin fusion 100.0 1.8E-54 3.9E-59 421.2 13.2 220 18-244 687-925 (929)
3 PF10408 Ufd2P_core: Ubiquitin 100.0 4.5E-38 9.8E-43 312.5 4.5 144 5-155 467-629 (629)
4 PF04564 U-box: U-box domain; 99.9 3E-26 6.5E-31 170.2 5.3 71 170-241 1-72 (73)
5 smart00504 Ubox Modified RING 99.8 1E-19 2.2E-24 129.3 5.9 63 173-236 1-63 (63)
6 KOG4642|consensus 99.5 2.9E-14 6.4E-19 128.1 5.8 76 167-243 205-281 (284)
7 PF11789 zf-Nse: Zinc-finger o 98.9 9.2E-10 2E-14 78.6 2.8 46 170-215 8-55 (57)
8 TIGR00599 rad18 DNA repair pro 98.8 4.4E-09 9.6E-14 100.7 6.5 74 167-241 20-93 (397)
9 PLN03208 E3 ubiquitin-protein 98.8 3.9E-09 8.5E-14 92.1 4.3 64 164-228 9-88 (193)
10 KOG0289|consensus 98.7 5.5E-09 1.2E-13 100.2 2.4 52 174-225 1-52 (506)
11 PHA02929 N1R/p28-like protein; 98.3 5.1E-06 1.1E-10 75.0 10.0 51 169-219 170-227 (238)
12 PF15227 zf-C3HC4_4: zinc fing 98.1 2.1E-06 4.6E-11 57.5 3.2 32 176-208 1-32 (42)
13 COG5222 Uncharacterized conser 98.1 6.1E-06 1.3E-10 76.6 6.9 69 174-242 275-345 (427)
14 PF13923 zf-C3HC4_2: Zinc fing 98.1 4.7E-06 1E-10 54.4 3.7 38 176-214 1-39 (39)
15 PF13920 zf-C3HC4_3: Zinc fing 97.9 9.4E-06 2E-10 55.6 3.6 47 172-219 1-48 (50)
16 KOG0823|consensus 97.9 7.2E-06 1.5E-10 73.4 3.2 55 172-227 46-103 (230)
17 PF13445 zf-RING_UBOX: RING-ty 97.9 1.1E-05 2.3E-10 54.6 2.8 31 176-208 1-35 (43)
18 KOG2177|consensus 97.8 2.2E-05 4.8E-10 67.2 3.9 70 168-240 8-77 (386)
19 PF14835 zf-RING_6: zf-RING of 97.8 7.3E-06 1.6E-10 60.0 0.5 59 173-233 7-65 (65)
20 KOG0317|consensus 97.7 2.4E-05 5.2E-10 72.0 3.3 57 167-224 232-289 (293)
21 KOG0287|consensus 97.6 4.5E-05 9.8E-10 71.9 3.5 68 172-240 22-89 (442)
22 PF13639 zf-RING_2: Ring finge 97.5 6.6E-05 1.4E-09 49.9 2.4 40 175-215 2-44 (44)
23 COG5432 RAD18 RING-finger-cont 97.5 8.1E-05 1.7E-09 69.1 3.0 67 173-240 25-91 (391)
24 cd00162 RING RING-finger (Real 97.3 0.00033 7.3E-09 44.7 3.8 44 175-218 1-45 (45)
25 KOG0297|consensus 97.3 0.00021 4.6E-09 68.5 3.5 70 168-237 16-86 (391)
26 KOG4692|consensus 97.2 0.0031 6.7E-08 60.1 10.6 181 38-219 236-467 (489)
27 PF00097 zf-C3HC4: Zinc finger 97.2 0.0005 1.1E-08 44.7 3.8 37 176-213 1-40 (41)
28 PF04641 Rtf2: Rtf2 RING-finge 97.2 0.00082 1.8E-08 61.0 6.2 56 169-225 109-167 (260)
29 KOG0320|consensus 97.1 0.00026 5.7E-09 61.4 2.5 52 173-225 131-184 (187)
30 KOG2979|consensus 97.1 0.00044 9.5E-09 63.0 3.7 66 171-236 174-245 (262)
31 KOG3039|consensus 97.1 0.00047 1E-08 62.7 3.4 58 168-225 216-276 (303)
32 TIGR00570 cdk7 CDK-activating 97.0 0.0013 2.9E-08 61.5 5.9 63 172-235 2-74 (309)
33 PHA02926 zinc finger-like prot 97.0 0.00057 1.2E-08 61.3 3.3 61 165-227 162-236 (242)
34 KOG0883|consensus 96.9 0.00053 1.2E-08 65.9 2.8 52 173-225 40-91 (518)
35 PF06416 DUF1076: Protein of u 96.9 0.0008 1.7E-08 54.2 2.9 58 168-225 35-97 (113)
36 smart00184 RING Ring finger. E 96.7 0.0021 4.4E-08 39.5 3.5 37 176-213 1-38 (39)
37 COG5574 PEX10 RING-finger-cont 96.7 0.00098 2.1E-08 60.9 2.2 55 168-223 209-266 (271)
38 KOG0826|consensus 96.5 0.0011 2.3E-08 62.4 1.7 57 168-224 295-351 (357)
39 PF12678 zf-rbx1: RING-H2 zinc 96.5 0.0034 7.4E-08 46.6 4.0 40 176-215 22-73 (73)
40 KOG3039|consensus 96.3 0.0031 6.7E-08 57.5 3.1 40 168-208 38-77 (303)
41 KOG4159|consensus 96.3 0.0033 7E-08 60.8 3.4 72 167-239 78-154 (398)
42 KOG2164|consensus 96.1 0.0041 8.9E-08 61.4 3.3 58 170-228 183-245 (513)
43 KOG2660|consensus 96.0 0.0035 7.7E-08 58.9 2.1 71 167-237 9-83 (331)
44 KOG0802|consensus 95.8 0.0043 9.3E-08 61.8 1.9 50 169-219 287-341 (543)
45 KOG0311|consensus 95.8 0.0015 3.3E-08 61.9 -1.4 70 166-235 36-107 (381)
46 KOG3113|consensus 95.3 0.037 7.9E-07 50.7 5.6 71 171-243 109-189 (293)
47 COG5243 HRD1 HRD ubiquitin lig 95.0 0.049 1.1E-06 52.5 6.0 52 170-222 284-348 (491)
48 PF14634 zf-RING_5: zinc-RING 94.9 0.026 5.7E-07 37.5 2.8 40 176-216 2-44 (44)
49 PF04641 Rtf2: Rtf2 RING-finge 94.8 0.057 1.2E-06 49.0 5.6 58 168-225 29-90 (260)
50 KOG0978|consensus 94.6 0.021 4.5E-07 58.7 2.5 56 169-225 639-695 (698)
51 PF02891 zf-MIZ: MIZ/SP-RING z 94.6 0.043 9.4E-07 38.0 3.3 44 174-217 3-50 (50)
52 PF12861 zf-Apc11: Anaphase-pr 93.1 0.11 2.3E-06 40.3 3.3 46 175-220 34-83 (85)
53 KOG0824|consensus 92.5 0.079 1.7E-06 49.6 2.3 54 175-230 9-63 (324)
54 KOG2817|consensus 91.7 0.15 3.2E-06 49.2 3.2 42 174-216 335-382 (394)
55 KOG1813|consensus 91.4 0.14 3E-06 47.9 2.5 59 174-234 242-300 (313)
56 KOG4367|consensus 90.8 0.13 2.9E-06 50.5 1.9 37 171-208 2-38 (699)
57 COG5540 RING-finger-containing 90.6 0.26 5.7E-06 46.4 3.5 45 175-220 325-373 (374)
58 KOG1002|consensus 90.0 0.14 3E-06 51.4 1.3 52 173-225 536-592 (791)
59 KOG0396|consensus 87.6 0.28 6E-06 47.2 1.4 49 173-222 330-382 (389)
60 COG5109 Uncharacterized conser 85.1 0.7 1.5E-05 43.8 2.7 43 173-216 336-384 (396)
61 KOG4628|consensus 84.4 0.8 1.7E-05 43.8 2.8 44 174-218 230-277 (348)
62 COG5627 MMS21 DNA repair prote 82.0 1.1 2.4E-05 41.0 2.5 63 173-235 189-257 (275)
63 COG5152 Uncharacterized conser 81.8 0.62 1.3E-05 41.7 0.9 43 174-217 197-239 (259)
64 COG5194 APC11 Component of SCF 80.4 1.3 2.8E-05 34.2 2.1 34 186-219 48-81 (88)
65 KOG2879|consensus 77.9 2.2 4.8E-05 39.7 3.2 48 172-219 238-287 (298)
66 KOG1039|consensus 76.3 1.8 3.9E-05 41.4 2.2 49 171-219 159-221 (344)
67 PF11793 FANCL_C: FANCL C-term 76.2 0.4 8.7E-06 35.3 -1.7 48 173-220 2-67 (70)
68 KOG1785|consensus 75.8 1.2 2.7E-05 43.5 1.0 52 167-219 362-416 (563)
69 KOG0828|consensus 74.8 1.7 3.7E-05 43.5 1.7 33 187-220 602-635 (636)
70 KOG1645|consensus 74.2 2.1 4.6E-05 41.9 2.1 62 173-234 4-71 (463)
71 COG4530 Uncharacterized protei 72.2 2.8 6E-05 34.2 2.0 30 174-203 10-43 (129)
72 COG5219 Uncharacterized conser 69.9 2 4.3E-05 46.2 1.0 45 175-219 1471-1523(1525)
73 PF05883 Baculo_RING: Baculovi 69.0 3.6 7.8E-05 34.4 2.1 48 170-217 22-78 (134)
74 KOG1734|consensus 67.5 1.2 2.5E-05 41.5 -1.1 66 172-238 223-305 (328)
75 KOG1001|consensus 61.8 1.5 3.3E-05 45.3 -1.7 50 174-225 455-506 (674)
76 PF09538 FYDLN_acid: Protein o 58.3 6 0.00013 31.7 1.5 26 174-199 10-39 (108)
77 KOG2930|consensus 57.0 7.8 0.00017 31.3 1.9 28 190-217 79-106 (114)
78 KOG4185|consensus 56.3 9.6 0.00021 34.6 2.7 50 186-236 22-77 (296)
79 smart00744 RINGv The RING-vari 56.0 15 0.00033 25.1 3.0 34 182-215 10-49 (49)
80 KOG4642|consensus 50.5 2.6 5.6E-05 39.0 -2.0 63 168-232 20-82 (284)
81 PRK11088 rrmA 23S rRNA methylt 50.4 8.1 0.00017 34.7 1.2 26 173-199 2-30 (272)
82 KOG0804|consensus 50.1 7.2 0.00016 38.7 0.9 43 175-219 177-222 (493)
83 PF00301 Rubredoxin: Rubredoxi 49.7 7.5 0.00016 26.7 0.7 16 166-181 27-42 (47)
84 cd00730 rubredoxin Rubredoxin; 48.8 8 0.00017 26.9 0.7 15 167-181 28-42 (50)
85 PF14447 Prok-RING_4: Prokaryo 48.2 12 0.00026 26.8 1.5 41 179-222 13-53 (55)
86 KOG0883|consensus 47.0 17 0.00036 35.8 2.8 68 169-238 97-175 (518)
87 KOG4265|consensus 43.9 19 0.00042 34.5 2.7 48 173-220 290-337 (349)
88 PF11101 DUF2884: Protein of u 41.4 96 0.0021 27.7 6.6 87 12-109 38-126 (229)
89 PF09162 Tap-RNA_bind: Tap, RN 40.2 18 0.00038 28.2 1.5 27 187-214 10-36 (88)
90 COG5634 Uncharacterized conser 39.6 30 0.00065 30.7 3.0 73 165-241 51-123 (223)
91 KOG1493|consensus 36.9 6.7 0.00015 30.1 -1.2 34 186-219 45-81 (84)
92 TIGR02300 FYDLN_acid conserved 35.3 20 0.00043 29.8 1.2 29 173-201 9-41 (129)
93 PF10915 DUF2709: Protein of u 34.6 27 0.00058 31.3 1.9 39 171-218 85-123 (238)
94 KOG0827|consensus 34.5 21 0.00046 35.0 1.4 46 172-218 3-55 (465)
95 COG1773 Rubredoxin [Energy pro 34.1 20 0.00042 25.7 0.8 15 167-181 30-44 (55)
96 KOG0314|consensus 33.4 19 0.00041 35.7 0.9 71 167-238 213-286 (448)
97 KOG3800|consensus 32.6 37 0.00079 32.0 2.6 46 176-222 3-54 (300)
98 PF11502 BCL9: B-cell lymphoma 31.4 25 0.00054 23.6 0.9 23 16-38 1-23 (40)
99 KOG4275|consensus 29.5 28 0.00061 33.0 1.3 65 148-218 276-341 (350)
100 KOG1571|consensus 28.1 50 0.0011 31.8 2.7 49 167-219 299-347 (355)
101 PF12629 Pox_polyA_pol_C: Poxv 27.9 92 0.002 27.8 4.1 80 47-132 2-113 (203)
102 COG4460 Uncharacterized protei 27.6 58 0.0013 26.8 2.6 28 187-215 41-69 (130)
103 PF09046 AvrPtoB-E3_ubiq: AvrP 27.1 43 0.00092 27.2 1.8 27 196-222 88-114 (124)
104 PF11023 DUF2614: Protein of u 24.8 65 0.0014 26.3 2.4 30 186-221 69-98 (114)
105 KOG4172|consensus 24.8 20 0.00044 25.9 -0.4 42 176-218 10-53 (62)
106 smart00531 TFIIE Transcription 24.7 1.1E+02 0.0023 25.3 3.8 41 168-221 94-136 (147)
107 KOG3113|consensus 24.4 56 0.0012 30.4 2.2 40 170-209 31-70 (293)
108 KOG3002|consensus 24.1 1.1E+02 0.0024 28.8 4.1 61 169-235 44-104 (299)
109 PF09494 Slx4: Slx4 endonuclea 22.5 63 0.0014 23.1 1.8 34 181-214 19-63 (64)
110 PLN03086 PRLI-interacting fact 21.7 1E+02 0.0022 31.7 3.6 51 168-219 448-515 (567)
111 PRK10236 hypothetical protein; 21.0 2E+02 0.0042 26.4 5.0 21 12-32 124-144 (237)
No 1
>KOG2042|consensus
Probab=100.00 E-value=5.6e-56 Score=449.57 Aligned_cols=234 Identities=39% Similarity=0.549 Sum_probs=221.5
Q ss_pred eeccccchhccCCChhhhhhhhHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHhcCC
Q psy1723 5 RLTVTTTLEFHVGHESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGP 84 (246)
Q Consensus 5 ~~~~~~~~~w~~l~~~~r~~~~~~l~~~~~~a~~~~~l~~eti~~l~~lt~~~~~~F~~~eiv~Rla~mLn~~L~~LvGp 84 (246)
+-++.|.++|..+++++|+++.+++++.+++||+++.+|++|+.||+++|+++|++|++|++++|+|+||||||.+||||
T Consensus 690 q~~~kn~~q~~~~~~~~~e~~~~~l~s~~r~art~~~la~et~~ll~~~tk~i~~~Fl~~elv~rla~MLN~nL~~lvGP 769 (943)
T KOG2042|consen 690 QPSGKNIDQWTKLKREEREAKWGRLASDERQARTGLALANETIDLLHLLTKAIPEPFLLPELVERLAAMLNYNLSQLVGP 769 (943)
T ss_pred hhhhhhhhhccCCcHHHHHHHHhccccchhhhcccceeccchhhHHHHHHhhcchhhcchhHHHHHHHHHhhhHHHhhCC
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCccccCCCCCCCCCccccchhh-----HHHHhccCCcchhhhhhc-------Ccchh-----hHhh-hcC-CCchhH
Q psy1723 85 KMRNFKTSRRSPGKQEGVGSIPAER-----KLKLNISTSPYYYFSLSL-------PPSLL-----YLAR-IGG-ASLIPD 145 (246)
Q Consensus 85 k~~~LkVkn~e~~~~~~y~F~Pk~l-----~iy~nl~~~~~~~F~~av-------~~~~F-----~l~~-i~~-~~~i~~ 145 (246)
||.+||||||++ |+|+|+++ +||+||++.+. |+.|| |+++| ++++ +++ +..|+.
T Consensus 770 K~~~Lkvkdp~~-----y~fePk~ll~~i~~iYlnl~~~~~--F~~avA~D~RSys~~lF~~a~~~~~k~~l~~~~~Ie~ 842 (943)
T KOG2042|consen 770 KCSDLKVKDPEK-----YGFEPKQLLSQLSDIYLNLSSEPS--FVEAVAKDGRSYSEELFNHAISILRKRILKSSRQIEE 842 (943)
T ss_pred cccccccCCccc-----cCCChHHHHHHHHHHHHhhccchh--HHHHHhccccccCHHHHhhhHHHHHHhhcccHHHHHH
Confidence 999999999999 99999999 99999998888 99999 78899 6733 333 458999
Q ss_pred HHHHHHHHHHHHhhccchhhhhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcc
Q psy1723 146 LRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIP 225 (246)
Q Consensus 146 ~~~l~~~v~~~~~~~~~~e~~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lip 225 (246)
|..|++++++.....++++++++|+||+|+||||+++|.|||++|+||+++||++|.+|++++++|||||+||+.+++.|
T Consensus 843 ~s~la~~~~~~~~~~~~eee~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~d~v~p 922 (943)
T KOG2042|consen 843 FSELAERVEATASIDAEEEEELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTEDMVSP 922 (943)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCchhhcCC
Confidence 99999999999999888999999999999999999999999999988999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhhhc
Q psy1723 226 NTQLQTQIQDWIRQCRQKSL 245 (246)
Q Consensus 226 n~~Lk~~Ie~w~~~~~~~~~ 245 (246)
|.+||+.|+.|..+++.++.
T Consensus 923 n~eLK~kI~~~~~ek~~~~~ 942 (943)
T KOG2042|consen 923 NEELKAKIRCWIKEKRNKKR 942 (943)
T ss_pred CHHHHHHHHHHHHHhhhccC
Confidence 99999999999999988653
No 2
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-54 Score=421.20 Aligned_cols=220 Identities=33% Similarity=0.449 Sum_probs=204.6
Q ss_pred ChhhhhhhhHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHhcCCCccCccccCCCCC
Q psy1723 18 HESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGPKMRNFKTSRRSPG 97 (246)
Q Consensus 18 ~~~~r~~~~~~l~~~~~~a~~~~~l~~eti~~l~~lt~~~~~~F~~~eiv~Rla~mLn~~L~~LvGpk~~~LkVkn~e~~ 97 (246)
..|+-++-++.|+.++|+|+++.+|+++++.||..+++++|++|+.+|||+|||+||||||+.||||||.+||||||++
T Consensus 687 ~~e~~~elq~~la~a~rqA~~sc~l~d~~~~lf~~~~~~iP~aF~~~EiV~rla~mLNyNL~~l~GPKC~~LkVkdP~~- 765 (929)
T COG5113 687 ISERIGELQKSLAFAKRQARNSCLLVDGCFDLFTHILDEIPDAFLVDEIVSRLARMLNYNLKILTGPKCTDLKVKDPEQ- 765 (929)
T ss_pred hhhHHHHHHHHHHHHHHhhcchheecccHHHHHHHHhhccchhhhhHHHHHHHHHHHhCcchhccCCCccceeecChhh-
Confidence 4455577788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccchhh-----HHHHhccCCcchhhhhhc-------Ccchh-----hHhh--hcCCCchhHHHHHHHHHHHHHh
Q psy1723 98 KQEGVGSIPAER-----KLKLNISTSPYYYFSLSL-------PPSLL-----YLAR--IGGASLIPDLRRVAVLVEKLGA 158 (246)
Q Consensus 98 ~~~~y~F~Pk~l-----~iy~nl~~~~~~~F~~av-------~~~~F-----~l~~--i~~~~~i~~~~~l~~~v~~~~~ 158 (246)
|+|+||.| ++|+||++..+ |+.|| +.++| |+.| +.++..|+++.+|+.++++.+-
T Consensus 766 ----Y~FnaK~LL~~~~~VYinl~~es~--FveaVA~D~rsf~~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E~~r~ 839 (929)
T COG5113 766 ----YGFNAKNLLRRMVMVYINLRSESK--FVEAVASDKRSFDIDFFRRALRICENKYLISESQIEELRSFINRLEKVRV 839 (929)
T ss_pred ----cCCCHHHHHHHHHHHhhhhcchHH--HHHHHHcccccccHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999998888 99999 55677 3443 2347789999999999999998
Q ss_pred hccchhhhhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q psy1723 159 QLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIR 238 (246)
Q Consensus 159 ~~~~~e~~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~ 238 (246)
+.+.+|+|++|+||+|+||+|.++|+|||+||.||.+.||++|..||+++++|||||.||+.+|++||.+||+.|..|..
T Consensus 840 ~ea~EeED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd~tDPFNRmPLtlddVtpn~eLrekIn~f~k 919 (929)
T COG5113 840 IEAVEEEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKINRFYK 919 (929)
T ss_pred HHhhhhhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcCCCCccccCCCchhhcCCCHHHHHHHHHHHh
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhhhh
Q psy1723 239 QCRQKS 244 (246)
Q Consensus 239 ~~~~~~ 244 (246)
.++.|.
T Consensus 920 ~k~~KH 925 (929)
T COG5113 920 CKGQKH 925 (929)
T ss_pred cccccc
Confidence 888754
No 3
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=100.00 E-value=4.5e-38 Score=312.51 Aligned_cols=144 Identities=35% Similarity=0.461 Sum_probs=120.3
Q ss_pred eeccccchhccCCChhhhhhhhHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHhcCC
Q psy1723 5 RLTVTTTLEFHVGHESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVGP 84 (246)
Q Consensus 5 ~~~~~~~~~w~~l~~~~r~~~~~~l~~~~~~a~~~~~l~~eti~~l~~lt~~~~~~F~~~eiv~Rla~mLn~~L~~LvGp 84 (246)
+.+++|..+|+++++++|+++++.+++.+++||||++||++||+||.+||+++|++|++||||+|||+||||||.+||||
T Consensus 467 q~~~~d~~~w~~~~~~~r~~~~~~l~~~e~~~rs~~~l~~~t~~~l~~lt~~~~~~Fl~~elv~RlA~MLn~~L~~L~Gp 546 (629)
T PF10408_consen 467 QEEMADQSEWNALSQEERQEKESQLEQAERQARSYLQLANETLKMLNYLTSEIPEPFLRPELVDRLAAMLNYNLDQLVGP 546 (629)
T ss_dssp HHHHHTSS---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGCSHHHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCccccCCCCCCCCCccccchhh-----HHHHhccCCcchhhhhhc-------Ccchh-----hHhhhc--CCCchhH
Q psy1723 85 KMRNFKTSRRSPGKQEGVGSIPAER-----KLKLNISTSPYYYFSLSL-------PPSLL-----YLARIG--GASLIPD 145 (246)
Q Consensus 85 k~~~LkVkn~e~~~~~~y~F~Pk~l-----~iy~nl~~~~~~~F~~av-------~~~~F-----~l~~i~--~~~~i~~ 145 (246)
||++||||||++ |||+||+| +||+||+++++ |++|| ++++| ++.|++ ++..+++
T Consensus 547 k~~~LkVk~~~~-----y~F~P~~ll~~i~~iy~~l~~~~~--F~~ava~D~Rsy~~~lf~~a~~~l~~~~l~~~~~i~~ 619 (629)
T PF10408_consen 547 KCSELKVKNPEK-----YGFDPKELLSQIVDIYLNLSDSDK--FVQAVANDGRSYSPELFEKAVRILRRIGLKSEDEIEK 619 (629)
T ss_dssp HHHT---SSGGG-----GT--HHHHHHHHHHHHHHCTT-HH--HHHHHHH-TTT--HHHHHHHHHHHTTSTSSTHHHHHH
T ss_pred chhcccCCChhh-----cCCcHHHHHHHHHHHHhhcCCchH--HHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999 99999999 99999999889 99999 78899 777776 4778999
Q ss_pred HHHHHHHHHH
Q psy1723 146 LRRVAVLVEK 155 (246)
Q Consensus 146 ~~~l~~~v~~ 155 (246)
|++|+++|++
T Consensus 620 f~~l~~~ve~ 629 (629)
T PF10408_consen 620 FEELAKKVEE 629 (629)
T ss_dssp HHHHCCHHHH
T ss_pred HHHHHHHHhC
Confidence 9999999975
No 4
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.93 E-value=3e-26 Score=170.16 Aligned_cols=71 Identities=42% Similarity=0.797 Sum_probs=62.4
Q ss_pred CCCccccccccccCCCceecCCCCceecHHHHHHHHhc-CCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHhh
Q psy1723 170 APDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS-DQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCR 241 (246)
Q Consensus 170 iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~-~~~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~~ 241 (246)
||++|+||||++||+|||++|+ |+||||++|++||.+ +.+||+||++++.++|+||..||++|++|+.+++
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~-G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPS-GHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETT-SEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCc-CCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 7999999999999999999997 799999999999999 6799999999999999999999999999999875
No 5
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.79 E-value=1e-19 Score=129.29 Aligned_cols=63 Identities=48% Similarity=0.806 Sum_probs=60.9
Q ss_pred ccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q psy1723 173 EYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDW 236 (246)
Q Consensus 173 ef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie~w 236 (246)
+|.||||+++|+|||++|+ ||+|+|++|.+|+.++++||+||++++.++++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~-G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPS-GQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCC-CCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999997 89999999999999988999999999999999999999999998
No 6
>KOG4642|consensus
Probab=99.49 E-value=2.9e-14 Score=128.10 Aligned_cols=76 Identities=34% Similarity=0.450 Sum_probs=71.2
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCC-CCCCCCCCCCCCCCcccHHHHHHHHHHHHHhhhh
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ-TDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQK 243 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~-~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~~~~ 243 (246)
..++|++.+|-|+..||+|||+.|+ |.||||..|.+||..-| .||.||.||+..+++||.+||..|..|++.+.-+
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~ps-gIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPS-GITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCcc-ccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence 5789999999999999999999997 89999999999998876 8999999999999999999999999999887543
No 7
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.89 E-value=9.2e-10 Score=78.63 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=33.4
Q ss_pred CCCccccccccccCCCceecCCCCceecHHHHHHHHhcCC--CCCCCC
Q psy1723 170 APDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ--TDPFNR 215 (246)
Q Consensus 170 iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~--~dP~tr 215 (246)
---.+.||||..+|+|||+...|||+|||++|.+||..++ .||+.+
T Consensus 8 ~~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp SB--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred cEeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 4456899999999999999977899999999999995443 799865
No 8
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.84 E-value=4.4e-09 Score=100.66 Aligned_cols=74 Identities=15% Similarity=0.084 Sum_probs=67.5
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHhh
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCR 241 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~~ 241 (246)
+.++.+.|.|||+..++.+||++|| ||+|+..||..|+...+.||.|+.++....|.+|..|.+.|+.|...+.
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpC-gH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R~ 93 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSC-SHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIVESFKNLRP 93 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCC-CCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHHHHHHHhhH
Confidence 3556778999999999999999997 8999999999999888899999999998899999999999999986544
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.80 E-value=3.9e-09 Score=92.14 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=55.3
Q ss_pred hhhhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhc----------------CCCCCCCCCCCCCCCCcccH
Q psy1723 164 EALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS----------------DQTDPFNRSPLTMEQVIPNT 227 (246)
Q Consensus 164 e~~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~----------------~~~dP~tr~pLt~~~lipn~ 227 (246)
+....+..++|.|||+.+.++|||++++ ||+|++.+|.+|+.. ...||.+|.+++...++|..
T Consensus 9 ~~~~~~~~~~~~CpICld~~~dPVvT~C-GH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 9 DTTLVDSGGDFDCNICLDQVRDPVVTLC-GHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred cceeccCCCccCCccCCCcCCCcEEcCC-CchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 3346778889999999999999999996 899999999999852 24899999999999999875
Q ss_pred H
Q psy1723 228 Q 228 (246)
Q Consensus 228 ~ 228 (246)
.
T Consensus 88 g 88 (193)
T PLN03208 88 G 88 (193)
T ss_pred c
Confidence 3
No 10
>KOG0289|consensus
Probab=98.71 E-value=5.5e-09 Score=100.18 Aligned_cols=52 Identities=25% Similarity=0.457 Sum_probs=50.4
Q ss_pred cccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcc
Q psy1723 174 YLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIP 225 (246)
Q Consensus 174 f~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lip 225 (246)
+.|.|++++-++||+.|.||++|||+-|++|+..+++||+|++||+.++|+|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeee
Confidence 5799999999999999999999999999999999999999999999999987
No 11
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.29 E-value=5.1e-06 Score=74.96 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=41.7
Q ss_pred CCCCccccccccccCCCc-------eecCCCCceecHHHHHHHHhcCCCCCCCCCCCC
Q psy1723 169 GAPDEYLDPIMNTIMLEP-------VTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLT 219 (246)
Q Consensus 169 ~iPdef~cPIt~~lM~DP-------Vilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt 219 (246)
+..++..|||+.+.+.+| ++++.|||+|++.||.+|+...++||++|.++.
T Consensus 170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 345677899999987764 234445999999999999999999999999875
No 12
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.14 E-value=2.1e-06 Score=57.50 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=27.9
Q ss_pred cccccccCCCceecCCCCceecHHHHHHHHhcC
Q psy1723 176 DPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD 208 (246)
Q Consensus 176 cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~ 208 (246)
|||..++++|||.+++ ||+|.+++|.+|....
T Consensus 1 CpiC~~~~~~Pv~l~C-GH~FC~~Cl~~~~~~~ 32 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPC-GHSFCRSCLERLWKEP 32 (42)
T ss_dssp ETTTTSB-SSEEE-SS-SSEEEHHHHHHHHCCS
T ss_pred CCccchhhCCccccCC-cCHHHHHHHHHHHHcc
Confidence 8999999999999997 8999999999998765
No 13
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.12 E-value=6.1e-06 Score=76.62 Aligned_cols=69 Identities=17% Similarity=0.354 Sum_probs=60.9
Q ss_pred cccccccccCCCceecCCCCceecHHHHHHHHhc-CCCCCCC-CCCCCCCCCcccHHHHHHHHHHHHHhhh
Q psy1723 174 YLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS-DQTDPFN-RSPLTMEQVIPNTQLQTQIQDWIRQCRQ 242 (246)
Q Consensus 174 f~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~-~~~dP~t-r~pLt~~~lipn~~Lk~~Ie~w~~~~~~ 242 (246)
+.||+|+.|.++||.+|||||+|+..||...|+. +-.||.| |..+-.+.|.|+...+..|+.++.++..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq~~ 345 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQRK 345 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999987654 4589987 5567788999999999999999985543
No 14
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.06 E-value=4.7e-06 Score=54.39 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=31.6
Q ss_pred cccccccCCCce-ecCCCCceecHHHHHHHHhcCCCCCCC
Q psy1723 176 DPIMNTIMLEPV-TLPSSRQTLDKSTIARHLLSDQTDPFN 214 (246)
Q Consensus 176 cPIt~~lM~DPV-ilp~sG~tydRs~I~~~L~~~~~dP~t 214 (246)
|||..+.+.||| ++++ ||+|.++.|.+|+..+..||+.
T Consensus 1 C~iC~~~~~~~~~~~~C-GH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPC-GHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTT-SEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCC-CCchhHHHHHHHHHCcCCCcCC
Confidence 799999999995 5665 9999999999999997788863
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.94 E-value=9.4e-06 Score=55.58 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=41.3
Q ss_pred CccccccccccCCCceecCCCCce-ecHHHHHHHHhcCCCCCCCCCCCC
Q psy1723 172 DEYLDPIMNTIMLEPVTLPSSRQT-LDKSTIARHLLSDQTDPFNRSPLT 219 (246)
Q Consensus 172 def~cPIt~~lM~DPVilp~sG~t-ydRs~I~~~L~~~~~dP~tr~pLt 219 (246)
+++.|+|..+-+.++|++|+ ||. |...++.+|+.+...||+.|++++
T Consensus 1 ~~~~C~iC~~~~~~~~~~pC-gH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPC-GHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETT-CEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCC-CChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 46789999999999999997 899 999999999998899999999875
No 16
>KOG0823|consensus
Probab=97.91 E-value=7.2e-06 Score=73.36 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=50.0
Q ss_pred CccccccccccCCCceecCCCCceecHHHHHHHHhcC---CCCCCCCCCCCCCCCcccH
Q psy1723 172 DEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD---QTDPFNRSPLTMEQVIPNT 227 (246)
Q Consensus 172 def~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~---~~dP~tr~pLt~~~lipn~ 227 (246)
..|-|-|+.++-+|||++.| ||-|+=.||.+||... ..||+++..++.+.|+|-.
T Consensus 46 ~~FdCNICLd~akdPVvTlC-GHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLC-GHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeec-ccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 37899999999999999997 8999999999999876 3789999999999999843
No 17
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.87 E-value=1.1e-05 Score=54.62 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=21.5
Q ss_pred cccccccCCC----ceecCCCCceecHHHHHHHHhcC
Q psy1723 176 DPIMNTIMLE----PVTLPSSRQTLDKSTIARHLLSD 208 (246)
Q Consensus 176 cPIt~~lM~D----PVilp~sG~tydRs~I~~~L~~~ 208 (246)
|||+.+ |.+ ||+||+ ||+|.|.+|.+++.++
T Consensus 1 CpIc~e-~~~~~n~P~~L~C-GH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPC-GHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SS-S-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeC-ccHHHHHHHHHHHhcC
Confidence 899999 999 999995 9999999999998864
No 18
>KOG2177|consensus
Probab=97.78 E-value=2.2e-05 Score=67.15 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=58.8
Q ss_pred cCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHh
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQC 240 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~ 240 (246)
....+++.|||+.+.+++|+++|+ ||+|+|.+|..++...-.||.+|. ... .+.+|..|.+.++.+...+
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~~l~C-~H~~c~~C~~~~~~~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPVLLPC-GHNFCRACLTRSWEGPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLR 77 (386)
T ss_pred hhccccccChhhHHHhhcCccccc-cchHhHHHHHHhcCCCcCCcccCC-chh-ccCccHHHHHHHHHHHhcC
Confidence 446688999999999999999997 899999999998873348999996 323 7889999999999887554
No 19
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.75 E-value=7.3e-06 Score=60.04 Aligned_cols=59 Identities=25% Similarity=0.255 Sum_probs=33.1
Q ss_pred ccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHH
Q psy1723 173 EYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQI 233 (246)
Q Consensus 173 ef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~I 233 (246)
-+.|+++.++|++||.+-.+.|+|..++|.+.+.+ .||+++.|-...|+.-|+.|-+-|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHHhhhhhhccC
Confidence 35799999999999987777999999999887754 499999999999999999987765
No 20
>KOG0317|consensus
Probab=97.72 E-value=2.4e-05 Score=72.04 Aligned_cols=57 Identities=18% Similarity=0.168 Sum_probs=51.2
Q ss_pred hcCCCCc-cccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCc
Q psy1723 167 LAGAPDE-YLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVI 224 (246)
Q Consensus 167 ~~~iPde-f~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~li 224 (246)
...+|+. +.|-|+.+-+.||--+|| ||.|+=+||..|....+.||.||++.+..+++
T Consensus 232 ~~~i~~a~~kC~LCLe~~~~pSaTpC-GHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRSNPSATPC-GHIFCWSCILEWCSEKAECPLCREKFQPSKVI 289 (293)
T ss_pred CccCCCCCCceEEEecCCCCCCcCcC-cchHHHHHHHHHHccccCCCcccccCCCccee
Confidence 3446665 999999999999999997 89999999999999999999999999887765
No 21
>KOG0287|consensus
Probab=97.60 E-value=4.5e-05 Score=71.91 Aligned_cols=68 Identities=16% Similarity=0.056 Sum_probs=62.4
Q ss_pred CccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHh
Q psy1723 172 DEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQC 240 (246)
Q Consensus 172 def~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~ 240 (246)
+-+-|-|+++.++-||++|| ||||+--||..||...+.||.|+.+.+..+|.-|.-|-..|+.|..-+
T Consensus 22 ~lLRC~IC~eyf~ip~itpC-sHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R 89 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPC-SHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVKSLNFAR 89 (442)
T ss_pred HHHHHhHHHHHhcCceeccc-cchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence 35679999999999999996 799999999999999999999999999999999999999999886443
No 22
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.51 E-value=6.6e-05 Score=49.93 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=33.2
Q ss_pred ccccccccC---CCceecCCCCceecHHHHHHHHhcCCCCCCCC
Q psy1723 175 LDPIMNTIM---LEPVTLPSSRQTLDKSTIARHLLSDQTDPFNR 215 (246)
Q Consensus 175 ~cPIt~~lM---~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr 215 (246)
.|||..+-| ..++.+++ ||+|.+++|.+|+.++++||+.|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C-~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPC-GHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETT-SEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccC-CCeeCHHHHHHHHHhCCcCCccC
Confidence 378888777 36678885 89999999999999999999875
No 23
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.46 E-value=8.1e-05 Score=69.06 Aligned_cols=67 Identities=15% Similarity=0.064 Sum_probs=60.6
Q ss_pred ccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHh
Q psy1723 173 EYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQC 240 (246)
Q Consensus 173 ef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~ 240 (246)
-+.|-|+.+-++-||+++| ||+|+--||.+||...+.||.||.+.-..-+.-+..++..++.|...+
T Consensus 25 ~lrC~IC~~~i~ip~~TtC-gHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r 91 (391)
T COG5432 25 MLRCRICDCRISIPCETTC-GHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHARNR 91 (391)
T ss_pred HHHhhhhhheeecceeccc-ccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhhhcc
Confidence 4679999999999999997 899999999999999999999999988888888988888888876543
No 24
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.31 E-value=0.00033 Score=44.73 Aligned_cols=44 Identities=32% Similarity=0.403 Sum_probs=37.8
Q ss_pred ccccccccCCCceecCCCCceecHHHHHHHHhc-CCCCCCCCCCC
Q psy1723 175 LDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS-DQTDPFNRSPL 218 (246)
Q Consensus 175 ~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~-~~~dP~tr~pL 218 (246)
.|||..+.+.+|+.++.+||.|.+.++..|+.. ...||..|.++
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 388999988999988856999999999999987 56899998753
No 25
>KOG0297|consensus
Probab=97.26 E-value=0.00021 Score=68.53 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=59.5
Q ss_pred cCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcc-cHHHHHHHHHHH
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIP-NTQLQTQIQDWI 237 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lip-n~~Lk~~Ie~w~ 237 (246)
..+.++++|||+..++.|||....|||.|++.+|..|+..++.||..+.+++....+| ...++..|..|.
T Consensus 16 ~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELPVPRALRRELLKLP 86 (391)
T ss_pred CCCcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccCchHHHHHHHHhcc
Confidence 3467779999999999999996445999999999999999899999999998888887 556666776654
No 26
>KOG4692|consensus
Probab=97.21 E-value=0.0031 Score=60.14 Aligned_cols=181 Identities=20% Similarity=0.230 Sum_probs=104.8
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhcch------hhHHHHHHHHHHHHHHHhcCCCccCccccCCCCCCCCCccccchhh--
Q psy1723 38 FDNILGNETIHTLEYLTSEIRSIFCH------STMVDRIAAMLNYFLFHLVGPKMRNFKTSRRSPGKQEGVGSIPAER-- 109 (246)
Q Consensus 38 ~~~~l~~eti~~l~~lt~~~~~~F~~------~eiv~Rla~mLn~~L~~LvGpk~~~LkVkn~e~~~~~~y~F~Pk~l-- 109 (246)
...-|+-.-.+.|++-+...|++|+. ..+..||+..||.+|.....|..---.|-+....--+...--|--.
T Consensus 236 ~cFeLsvsL~RvLEm~it~~Peifld~trpns~~Ll~ri~qllnqvlsrVt~e~~lf~rvv~~~~~~le~V~hypil~a~ 315 (489)
T KOG4692|consen 236 VCFELSVSLARVLEMCITAMPEIFLDGTRPNSRRLLERILQLLNQVLSRVTDEFFLFVRVVRRQGQPLEKVSHYPILAAL 315 (489)
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHhcCCCCcHHHHHHHHHHHHHHHHHhhccccchhHHHHHhhcCChhhhcccchHHHH
Confidence 45667778888999999999999985 4588999999999999986554322222222111111133334322
Q ss_pred -HHHHhccCCcc--hhhhhhc---------Ccch--h---h-Hhhh----------c--CCCc--------hhHH-HHHH
Q psy1723 110 -KLKLNISTSPY--YYFSLSL---------PPSL--L---Y-LARI----------G--GASL--------IPDL-RRVA 150 (246)
Q Consensus 110 -~iy~nl~~~~~--~~F~~av---------~~~~--F---~-l~~i----------~--~~~~--------i~~~-~~l~ 150 (246)
-|.+||-.... ..--+++ .|.. . . |..+ + .++. ...+ +...
T Consensus 316 ~GIll~Ll~~~~~S~~r~Q~~~~~~~a~l~dP~fq~~~~~ylLg~~~pdpp~p~t~~~p~pd~krfal~~~~~~~s~~e~ 395 (489)
T KOG4692|consen 316 VGILLNLLEASEDSKPRQQHDVIGLFASLDDPDFQYYGFQYLLGYNWPDPPDPLTDGCPSPDDKRFALVKKLGQLSNFES 395 (489)
T ss_pred HHHHHHHHHhCcccCcccchhhhhhheeccCcchHHHHHHHHHhcCCCCCCCccccCCCCCCccchHHhhhhhhhhHHHH
Confidence 67777633211 0000000 1210 0 1 1110 0 0111 0011 1223
Q ss_pred HHHHHHHhhcc--chhhhhcCCC--CccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCC
Q psy1723 151 VLVEKLGAQLQ--SDEALLAGAP--DEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLT 219 (246)
Q Consensus 151 ~~v~~~~~~~~--~~e~~~~~iP--def~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt 219 (246)
..|+.+..+.. .++..-.+.| ++=+|||+..=--..|..|| ||--+..||.+|+.+...|-|++..+.
T Consensus 396 ~~V~r~~~~l~~~~~~~~~~~lp~sEd~lCpICyA~pi~Avf~PC-~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 396 HLVNRASSQLPERKEESFNKDLPDSEDNLCPICYAGPINAVFAPC-SHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred HHHHHHHhhcchhhHHhhcCCCCCcccccCcceecccchhhccCC-CCchHHHHHHHHHhcCCeeeEecceee
Confidence 33444333322 1223334556 57799999988889999998 799999999999999999999987543
No 27
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.20 E-value=0.0005 Score=44.68 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=32.0
Q ss_pred cccccccCCCce-ecCCCCceecHHHHHHHHhcC--CCCCC
Q psy1723 176 DPIMNTIMLEPV-TLPSSRQTLDKSTIARHLLSD--QTDPF 213 (246)
Q Consensus 176 cPIt~~lM~DPV-ilp~sG~tydRs~I~~~L~~~--~~dP~ 213 (246)
|||..+.+.+|+ +++. ||+|.+.+|.+|+.++ ..||.
T Consensus 1 C~iC~~~~~~~~~~~~C-~H~fC~~C~~~~~~~~~~~~CP~ 40 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPC-GHSFCRDCLRKWLENSGSVKCPL 40 (41)
T ss_dssp ETTTSSBCSSEEEETTT-SEEEEHHHHHHHHHHTSSSBTTT
T ss_pred CCcCCccccCCCEEecC-CCcchHHHHHHHHHhcCCccCCc
Confidence 799999999999 7776 8999999999999843 36775
No 28
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.18 E-value=0.00082 Score=60.95 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=46.0
Q ss_pred CCCCccccccccccCCC---ceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcc
Q psy1723 169 GAPDEYLDPIMNTIMLE---PVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIP 225 (246)
Q Consensus 169 ~iPdef~cPIt~~lM~D---PVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lip 225 (246)
.-...|+||||+..|.. =|.+..|||+|...+|.+. ..+..||.|++|++..|+|+
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEEE
Confidence 35678999999999954 3555556999999999997 23568999999999999985
No 29
>KOG0320|consensus
Probab=97.14 E-value=0.00026 Score=61.37 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=44.4
Q ss_pred ccccccccccCCCce--ecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcc
Q psy1723 173 EYLDPIMNTIMLEPV--TLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIP 225 (246)
Q Consensus 173 ef~cPIt~~lM~DPV--ilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lip 225 (246)
-|.|||+.+-...=| -+.| ||+|++.||...+.....||.+|+.++..++.+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkC-GHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKC-GHVFCSQCIKDALKNTNKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccCCCceecchhhcccccccc-chhHHHHHHHHHHHhCCCCCCcccccchhhhee
Confidence 399999998776644 4665 999999999999999999999999999877654
No 30
>KOG2979|consensus
Probab=97.11 E-value=0.00044 Score=62.98 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=53.9
Q ss_pred CCccccccccccCCCceecCCCCceecHHHHHHHHhcC--CCCCCCCCC----CCCCCCcccHHHHHHHHHH
Q psy1723 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD--QTDPFNRSP----LTMEQVIPNTQLQTQIQDW 236 (246)
Q Consensus 171 Pdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~--~~dP~tr~p----Lt~~~lipn~~Lk~~Ie~w 236 (246)
-=.+.||||..+...||+...|||+|||..|...+-.. -.||+-+-+ +-...+.+..+|+..|+.-
T Consensus 174 ~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~~ 245 (262)
T KOG2979|consen 174 VFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQS 245 (262)
T ss_pred hhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHHh
Confidence 33689999999999999999999999999999998663 379987654 3345677888888888764
No 31
>KOG3039|consensus
Probab=97.06 E-value=0.00047 Score=62.73 Aligned_cols=58 Identities=21% Similarity=0.405 Sum_probs=50.2
Q ss_pred cCCCCccccccccccCCCce---ecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcc
Q psy1723 168 AGAPDEYLDPIMNTIMLEPV---TLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIP 225 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPV---ilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lip 225 (246)
......|+||+|.+.+.+-+ +|..||+++...|.++.+..+..||+|+.|++..++|+
T Consensus 216 ~a~s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 216 IAASKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred hhhccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEe
Confidence 33447899999998888754 45556999999999999999999999999999999987
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.00 E-value=0.0013 Score=61.46 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=47.3
Q ss_pred Cccccccccc-cCCCce----ecCCCCceecHHHHHHHHhcC-CCCCCCCCCCCCCC----CcccHHHHHHHHH
Q psy1723 172 DEYLDPIMNT-IMLEPV----TLPSSRQTLDKSTIARHLLSD-QTDPFNRSPLTMEQ----VIPNTQLQTQIQD 235 (246)
Q Consensus 172 def~cPIt~~-lM~DPV----ilp~sG~tydRs~I~~~L~~~-~~dP~tr~pLt~~~----lipn~~Lk~~Ie~ 235 (246)
|+..||+|.+ ....|= +.+ |||.||++||.+++..+ +.||.|+.++.... +.++..+...|+-
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~i 74 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDI 74 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHH
Confidence 5689999986 345553 334 59999999999977655 58999999998877 5666666665543
No 33
>PHA02926 zinc finger-like protein; Provisional
Probab=96.99 E-value=0.00057 Score=61.34 Aligned_cols=61 Identities=11% Similarity=0.038 Sum_probs=45.4
Q ss_pred hhhcCCCCccccccccccCCCc--------eecCCCCceecHHHHHHHHhcC------CCCCCCCCCCCCCCCcccH
Q psy1723 165 ALLAGAPDEYLDPIMNTIMLEP--------VTLPSSRQTLDKSTIARHLLSD------QTDPFNRSPLTMEQVIPNT 227 (246)
Q Consensus 165 ~~~~~iPdef~cPIt~~lM~DP--------Vilp~sG~tydRs~I~~~L~~~------~~dP~tr~pLt~~~lipn~ 227 (246)
++.....++-.|+|+.+..-+| -+|++|||+|+.+||.+|.... ..||++|++++ -++|++
T Consensus 162 e~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pSr 236 (242)
T PHA02926 162 EDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMSK 236 (242)
T ss_pred HHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eecccc
Confidence 3455677789999999886442 3455569999999999999753 25999999865 355543
No 34
>KOG0883|consensus
Probab=96.95 E-value=0.00053 Score=65.87 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=49.5
Q ss_pred ccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcc
Q psy1723 173 EYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIP 225 (246)
Q Consensus 173 ef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lip 225 (246)
...|.|+.-.+.|||-+++ |.+||=.+|.-||...++.|.|+++|+..+||+
T Consensus 40 ~~hC~lt~~Pfe~PvC~~d-g~vFd~~~Ivp~lkk~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVD-GTVFDLTAIVPWLKKHGTNPITGQKLDGKDLIK 91 (518)
T ss_pred hhhceeccccccCcccccC-CcEEeeehhhHHHHHcCCCCCCCCcccccccee
Confidence 4689999999999999997 899999999999999999999999999999987
No 35
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=96.87 E-value=0.0008 Score=54.21 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=37.3
Q ss_pred cCCCCccccccccccCCCceecCCCCc-----eecHHHHHHHHhcCCCCCCCCCCCCCCCCcc
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTLPSSRQ-----TLDKSTIARHLLSDQTDPFNRSPLTMEQVIP 225 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVilp~sG~-----tydRs~I~~~L~~~~~dP~tr~pLt~~~lip 225 (246)
.-..+.+.||||..+-+.=|-...|+. -||..++.+.+..+...|++|+|++.++++.
T Consensus 35 ~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~~HPLSREpit~sMIv~ 97 (113)
T PF06416_consen 35 QCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGAPHPLSREPITPSMIVS 97 (113)
T ss_dssp TS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT---TTT-----TTTEE-
T ss_pred cCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCCCCCCccCCCChhhEec
Confidence 334455789999999999997766544 3999999999999999999999999998874
No 36
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.74 E-value=0.0021 Score=39.50 Aligned_cols=37 Identities=32% Similarity=0.470 Sum_probs=32.1
Q ss_pred cccccccCCCceecCCCCceecHHHHHHHHh-cCCCCCC
Q psy1723 176 DPIMNTIMLEPVTLPSSRQTLDKSTIARHLL-SDQTDPF 213 (246)
Q Consensus 176 cPIt~~lM~DPVilp~sG~tydRs~I~~~L~-~~~~dP~ 213 (246)
|||..+...+|+++++ ||.|...+|..|+. ....||+
T Consensus 1 C~iC~~~~~~~~~~~C-~H~~c~~C~~~~~~~~~~~CP~ 38 (39)
T smart00184 1 CPICLEELKDPVVLPC-GHTFCRSCIRKWLKSGNNTCPI 38 (39)
T ss_pred CCcCccCCCCcEEecC-CChHHHHHHHHHHHhCcCCCCC
Confidence 6888888999999997 89999999999998 3356886
No 37
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.00098 Score=60.94 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=46.4
Q ss_pred cCCC-CccccccccccCCCceecCCCCceecHHHHHH-HHhcC-CCCCCCCCCCCCCCC
Q psy1723 168 AGAP-DEYLDPIMNTIMLEPVTLPSSRQTLDKSTIAR-HLLSD-QTDPFNRSPLTMEQV 223 (246)
Q Consensus 168 ~~iP-def~cPIt~~lM~DPVilp~sG~tydRs~I~~-~L~~~-~~dP~tr~pLt~~~l 223 (246)
.-+| .+|.|+|+.+.|.+|+.+|+ ||+|+=+||.. |=... ..||.+|+.....++
T Consensus 209 pfip~~d~kC~lC~e~~~~ps~t~C-gHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 209 PFIPLADYKCFLCLEEPEVPSCTPC-GHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred CcccccccceeeeecccCCcccccc-cchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 3345 47999999999999999997 89999999999 87665 579999998766554
No 38
>KOG0826|consensus
Probab=96.55 E-value=0.0011 Score=62.37 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=50.7
Q ss_pred cCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCc
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVI 224 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~li 224 (246)
.-.|+.=.||+|..=-.+|-++..||.+||-.||..|+.+.+.||+|+.|.+.++++
T Consensus 295 ~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~ 351 (357)
T KOG0826|consen 295 LLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLI 351 (357)
T ss_pred cCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHH
Confidence 335667789999999999999988999999999999999999999999999887664
No 39
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.52 E-value=0.0034 Score=46.57 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=31.9
Q ss_pred cccccccCCCc------------eecCCCCceecHHHHHHHHhcCCCCCCCC
Q psy1723 176 DPIMNTIMLEP------------VTLPSSRQTLDKSTIARHLLSDQTDPFNR 215 (246)
Q Consensus 176 cPIt~~lM~DP------------Vilp~sG~tydRs~I~~~L~~~~~dP~tr 215 (246)
|+|+.+.+.|| |++..+||.|-..+|.+||..+.+||++|
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 99988888443 34433599999999999999989999986
No 40
>KOG3039|consensus
Probab=96.30 E-value=0.0031 Score=57.50 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=34.7
Q ss_pred cCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcC
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD 208 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~ 208 (246)
+.|-+.-+|.+|....+|||++|. |+.|||.+|.++++..
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit~~-GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVITPD-GYLFDREAILEYILAQ 77 (303)
T ss_pred cccCCcceeeeecccccCCccCCC-CeeeeHHHHHHHHHHH
Confidence 446666689999999999999998 8999999999988653
No 41
>KOG4159|consensus
Probab=96.29 E-value=0.0033 Score=60.79 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=58.0
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCC----CCC-cccHHHHHHHHHHHHH
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTM----EQV-IPNTQLQTQIQDWIRQ 239 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~----~~l-ipn~~Lk~~Ie~w~~~ 239 (246)
..+++.+|.|-|+..++.+||++|+ ||+|++.||.+-+.....||.+|.++.. ... .+|..++.-|..|+..
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpc-ghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPC-GHSFCLECLDRSLDQETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccc-cccccHHHHHHHhccCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 5667999999999999999999997 8999999999977777799999888753 222 2467777777766643
No 42
>KOG2164|consensus
Probab=96.14 E-value=0.0041 Score=61.40 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=49.6
Q ss_pred CCCccccccccccCCCceecCCCCceecHHHHHHHHhcC-----CCCCCCCCCCCCCCCcccHH
Q psy1723 170 APDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD-----QTDPFNRSPLTMEQVIPNTQ 228 (246)
Q Consensus 170 iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~-----~~dP~tr~pLt~~~lipn~~ 228 (246)
++.+..||||..--.=||++-| ||+||=.||.+++... ..||.||..++..+|.|...
T Consensus 183 ~~t~~~CPICL~~~~~p~~t~C-GHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 183 GSTDMQCPICLEPPSVPVRTNC-GHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred cCcCCcCCcccCCCCccccccc-CceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 4558899999999999999995 9999999999977654 48999999999988877543
No 43
>KOG2660|consensus
Probab=96.02 E-value=0.0035 Score=58.87 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=58.5
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCC----CCCcccHHHHHHHHHHH
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTM----EQVIPNTQLQTQIQDWI 237 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~----~~lipn~~Lk~~Ie~w~ 237 (246)
..++-....|+|++..|.|+-....|=|||+|+||.+||....+||.++..+-. ..+.++..|...+....
T Consensus 9 ~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLV 83 (331)
T KOG2660|consen 9 LTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLV 83 (331)
T ss_pred hhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHc
Confidence 455677889999999999999888889999999999999999999999776643 35667777777666543
No 44
>KOG0802|consensus
Probab=95.82 E-value=0.0043 Score=61.77 Aligned_cols=50 Identities=24% Similarity=0.186 Sum_probs=44.0
Q ss_pred CCCCccccccccccCCC-----ceecCCCCceecHHHHHHHHhcCCCCCCCCCCCC
Q psy1723 169 GAPDEYLDPIMNTIMLE-----PVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLT 219 (246)
Q Consensus 169 ~iPdef~cPIt~~lM~D-----PVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt 219 (246)
....+-.|+|+.+.|.. |=++|| ||+|-.+|+..|+...++||++|..+.
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C-~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPC-GHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeec-ccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 34557789999999999 789997 899999999999999999999998443
No 45
>KOG0311|consensus
Probab=95.79 E-value=0.0015 Score=61.91 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=57.6
Q ss_pred hhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcC-CCCCCCCCCC-CCCCCcccHHHHHHHHH
Q psy1723 166 LLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD-QTDPFNRSPL-TMEQVIPNTQLQTQIQD 235 (246)
Q Consensus 166 ~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~-~~dP~tr~pL-t~~~lipn~~Lk~~Ie~ 235 (246)
++..+--+|.|||+..|.+--..++-|+|-|++.||..-+... ..||-||+.+ +.-.|.+++..-+.|.+
T Consensus 36 ~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~ 107 (381)
T KOG0311|consen 36 DLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISK 107 (381)
T ss_pred cHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHH
Confidence 4556667899999999999999999999999999999988776 4899999987 44677776666555543
No 46
>KOG3113|consensus
Probab=95.27 E-value=0.037 Score=50.74 Aligned_cols=71 Identities=10% Similarity=0.139 Sum_probs=52.9
Q ss_pred CCccccccccccCCCce---ecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcc---c----HHHHHHHHHHHHHh
Q psy1723 171 PDEYLDPIMNTIMLEPV---TLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIP---N----TQLQTQIQDWIRQC 240 (246)
Q Consensus 171 Pdef~cPIt~~lM~DPV---ilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lip---n----~~Lk~~Ie~w~~~~ 240 (246)
-..|+|||++-.|.+=- .+-+||++|.-.++.+.= ..+||.|+.+...+|+|+ | .-||.+.++-..+.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIvlNg~~E~~dllk~rme~~kak~ 186 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIVLNGTEEDVDLLKTRMEERKAKA 186 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCeEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 34799999999998864 455569999999998854 468999999999998875 2 33566666555544
Q ss_pred hhh
Q psy1723 241 RQK 243 (246)
Q Consensus 241 ~~~ 243 (246)
+.+
T Consensus 187 k~~ 189 (293)
T KOG3113|consen 187 KLE 189 (293)
T ss_pred Hhh
Confidence 433
No 47
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.049 Score=52.47 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=41.8
Q ss_pred CCCcccccccccc-CCCc------------eecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy1723 170 APDEYLDPIMNTI-MLEP------------VTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQ 222 (246)
Q Consensus 170 iPdef~cPIt~~l-M~DP------------Vilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~ 222 (246)
.-++=.|-||.+- |.-| =.||| ||++-=+|+..|++..++||.||.|+-.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpC-GHilHl~CLknW~ERqQTCPICr~p~ifd~ 348 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPC-GHILHLHCLKNWLERQQTCPICRRPVIFDQ 348 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccc-cceeeHHHHHHHHHhccCCCcccCcccccc
Confidence 4456678887755 4433 78997 899999999999999999999999975443
No 48
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=94.89 E-value=0.026 Score=37.54 Aligned_cols=40 Identities=10% Similarity=-0.008 Sum_probs=31.0
Q ss_pred cccccccC---CCceecCCCCceecHHHHHHHHhcCCCCCCCCC
Q psy1723 176 DPIMNTIM---LEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRS 216 (246)
Q Consensus 176 cPIt~~lM---~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~ 216 (246)
||+....+ .-|+++++ ||+|..++|.++......||+.|+
T Consensus 2 C~~C~~~~~~~~~~~l~~C-gH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSC-GHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEccc-CCHHHHHHHHhhcCCCCCCcCCCC
Confidence 66777666 34677776 899999999998844468999875
No 49
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.79 E-value=0.057 Score=48.99 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=42.2
Q ss_pred cCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCC---CCCCCCCC-CCCCCcc
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQT---DPFNRSPL-TMEQVIP 225 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~---dP~tr~pL-t~~~lip 225 (246)
...-..+.|+||+..+.+||+.-.-|+.|++.+|..||+.... -|-+...+ +..||++
T Consensus 29 ~~~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~~~~~~~~~~~hI~~LKDl~~ 90 (260)
T PF04641_consen 29 EREARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKKKNKDLPKTFSHIKSLKDLVE 90 (260)
T ss_pred HhhCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcCcCCCCccccccccCccceee
Confidence 3344478999999999999987656999999999999998753 34333333 3455543
No 50
>KOG0978|consensus
Probab=94.63 E-value=0.021 Score=58.69 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=49.0
Q ss_pred CCCCccccccccccCCCceecCCCCceecHHHHHHHHhcC-CCCCCCCCCCCCCCCcc
Q psy1723 169 GAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD-QTDPFNRSPLTMEQVIP 225 (246)
Q Consensus 169 ~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~-~~dP~tr~pLt~~~lip 225 (246)
+.-.-+.||.|.+=.+|-||+.| ||.||-.||...+... ..||-|+.+....|+.|
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~vI~kC-~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDAVITKC-GHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHHhceeCCCccCchhhHHHHhc-chHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 34445899999999999999997 8999999999988766 59999999999988876
No 51
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.57 E-value=0.043 Score=38.01 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=29.5
Q ss_pred cccccccccCCCceecCCCCce--ecHHHHHHHHhcCC--CCCCCCCC
Q psy1723 174 YLDPIMNTIMLEPVTLPSSRQT--LDKSTIARHLLSDQ--TDPFNRSP 217 (246)
Q Consensus 174 f~cPIt~~lM~DPVilp~sG~t--ydRs~I~~~L~~~~--~dP~tr~p 217 (246)
+.||||+..|+-||....+.|. ||-.+....-.+.+ .||++++|
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 6899999999999998877665 99888777666554 69999875
No 52
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=93.07 E-value=0.11 Score=40.27 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=35.3
Q ss_pred ccccccccCCC-ceecCCCCceecHHHHHHHHhcC---CCCCCCCCCCCC
Q psy1723 175 LDPIMNTIMLE-PVTLPSSRQTLDKSTIARHLLSD---QTDPFNRSPLTM 220 (246)
Q Consensus 175 ~cPIt~~lM~D-PVilp~sG~tydRs~I~~~L~~~---~~dP~tr~pLt~ 220 (246)
.||.+.-.=.| |++.-.+||.|-..+|.+||.+. +.||.+|++...
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 35554444444 77777789999999999999864 699999998643
No 53
>KOG0824|consensus
Probab=92.53 E-value=0.079 Score=49.62 Aligned_cols=54 Identities=19% Similarity=0.046 Sum_probs=44.7
Q ss_pred ccccccccCCCceecCCCCceecHHHHHHHHhcC-CCCCCCCCCCCCCCCcccHHHH
Q psy1723 175 LDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD-QTDPFNRSPLTMEQVIPNTQLQ 230 (246)
Q Consensus 175 ~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~-~~dP~tr~pLt~~~lipn~~Lk 230 (246)
.|+|+..-|.-||.+++ +|.|+--+|..-..++ .+||++|.|++.+ +.-++.|+
T Consensus 9 eC~IC~nt~n~Pv~l~C-~HkFCyiCiKGsy~ndk~~CavCR~pids~-i~~~psl~ 63 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYC-FHKFCYICIKGSYKNDKKTCAVCRFPIDST-IDFEPSLK 63 (324)
T ss_pred cceeeeccCCcCccccc-cchhhhhhhcchhhcCCCCCceecCCCCcc-hhcchhhh
Confidence 49999999999999997 8999999999966665 5899999999874 44444444
No 54
>KOG2817|consensus
Probab=91.74 E-value=0.15 Score=49.24 Aligned_cols=42 Identities=14% Similarity=0.343 Sum_probs=34.3
Q ss_pred cccccccccCCC---ceecCCCCceecHHHHHHHHhcCC---CCCCCCC
Q psy1723 174 YLDPIMNTIMLE---PVTLPSSRQTLDKSTIARHLLSDQ---TDPFNRS 216 (246)
Q Consensus 174 f~cPIt~~lM~D---PVilp~sG~tydRs~I~~~L~~~~---~dP~tr~ 216 (246)
|.|||+.+-=.| |+.+.| ||+..|.+|.+-..++. .||+|-.
T Consensus 335 F~CPVlKeqtsdeNPPm~L~C-GHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLIC-GHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eecccchhhccCCCCCeeeec-cceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 799999877665 889997 89999999999766553 5898743
No 55
>KOG1813|consensus
Probab=91.42 E-value=0.14 Score=47.86 Aligned_cols=59 Identities=7% Similarity=0.004 Sum_probs=48.1
Q ss_pred cccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHH
Q psy1723 174 YLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQ 234 (246)
Q Consensus 174 f~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie 234 (246)
|-|-|+..-+.+||++.| ||+|+..|-..++.....|++|.++.- .-.-+..+|.....
T Consensus 242 f~c~icr~~f~~pVvt~c-~h~fc~~ca~~~~qk~~~c~vC~~~t~-g~~~~akeL~~~L~ 300 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKC-GHYFCEVCALKPYQKGEKCYVCSQQTH-GSFNVAKELLVSLK 300 (313)
T ss_pred ccccccccccccchhhcC-CceeehhhhccccccCCcceecccccc-cccchHHHHHHHHH
Confidence 679999999999999997 899999999999998899999998643 33455555554443
No 56
>KOG4367|consensus
Probab=90.79 E-value=0.13 Score=50.51 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=32.6
Q ss_pred CCccccccccccCCCceecCCCCceecHHHHHHHHhcC
Q psy1723 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD 208 (246)
Q Consensus 171 Pdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~ 208 (246)
.+++.|||++..++||+|||+ ||..+|.|-..-+-+.
T Consensus 2 eeelkc~vc~~f~~epiil~c-~h~lc~~ca~~~~~~t 38 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPC-SHNLCQACARNILVQT 38 (699)
T ss_pred cccccCceehhhccCceEeec-ccHHHHHHHHhhcccC
Confidence 478999999999999999998 7999999988766554
No 57
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=0.26 Score=46.45 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=33.3
Q ss_pred ccccccccC--CCc-eecCCCCceecHHHHHHHHhcC-CCCCCCCCCCCC
Q psy1723 175 LDPIMNTIM--LEP-VTLPSSRQTLDKSTIARHLLSD-QTDPFNRSPLTM 220 (246)
Q Consensus 175 ~cPIt~~lM--~DP-Vilp~sG~tydRs~I~~~L~~~-~~dP~tr~pLt~ 220 (246)
-|.||..=+ -|- +++|| .|.|-++||.+|+... ..||.||.++..
T Consensus 325 eCaICms~fiK~d~~~vlPC-~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 325 ECAICMSNFIKNDRLRVLPC-DHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred eEEEEhhhhcccceEEEecc-CceechhHHHHHHhhhcccCCccCCCCCC
Confidence 466654222 233 47897 7999999999999854 589999998753
No 58
>KOG1002|consensus
Probab=90.00 E-value=0.14 Score=51.40 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=44.7
Q ss_pred ccccccccccCCCceecCCCCceecHHHHHHHHhc----CC-CCCCCCCCCCCCCCcc
Q psy1723 173 EYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS----DQ-TDPFNRSPLTMEQVIP 225 (246)
Q Consensus 173 ef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~----~~-~dP~tr~pLt~~~lip 225 (246)
+-.|-|+.+.-+||+...| .|+|||.||..++.+ ++ +||.|-.+|+.+.-.|
T Consensus 536 ~~~C~lc~d~aed~i~s~C-hH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSC-HHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred ceeecccCChhhhhHhhhh-hHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 5789999999999999997 899999999887754 23 9999999999975444
No 59
>KOG0396|consensus
Probab=87.56 E-value=0.28 Score=47.15 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=41.8
Q ss_pred ccccccccccCCC---ceecCCCCceecHHHHHHHHhcCC-CCCCCCCCCCCCC
Q psy1723 173 EYLDPIMNTIMLE---PVTLPSSRQTLDKSTIARHLLSDQ-TDPFNRSPLTMEQ 222 (246)
Q Consensus 173 ef~cPIt~~lM~D---PVilp~sG~tydRs~I~~~L~~~~-~dP~tr~pLt~~~ 222 (246)
-..|-|++++|.| |++.|. |++|--.+|..|=..++ .||.+++.+...+
T Consensus 330 ~Lvc~isge~md~~N~P~lfpn-G~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPN-GYVYGTKALESLNEDDGIGDPRTKKVFRYSE 382 (389)
T ss_pred HHHhhccccccCCCCCcccccC-ceeehhHHHHhhcccCCCcCCCCCccccHHH
Confidence 4679999999987 999997 89999999999988775 8999988765543
No 60
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.07 E-value=0.7 Score=43.84 Aligned_cols=43 Identities=14% Similarity=0.341 Sum_probs=34.3
Q ss_pred ccccccccccCCC---ceecCCCCceecHHHHHHHHhcCC---CCCCCCC
Q psy1723 173 EYLDPIMNTIMLE---PVTLPSSRQTLDKSTIARHLLSDQ---TDPFNRS 216 (246)
Q Consensus 173 ef~cPIt~~lM~D---PVilp~sG~tydRs~I~~~L~~~~---~dP~tr~ 216 (246)
-|+||...+.-.| ||++.| ||+.-+.++.+.-.++. .||+|-.
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~C-gHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLEC-GHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeeccccHhhhcccCCCeeeec-cceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 4899999988766 899997 89999999998555442 6888754
No 61
>KOG4628|consensus
Probab=84.36 E-value=0.8 Score=43.78 Aligned_cols=44 Identities=14% Similarity=0.075 Sum_probs=37.6
Q ss_pred cccccccccCCC--c-eecCCCCceecHHHHHHHHhcCC-CCCCCCCCC
Q psy1723 174 YLDPIMNTIMLE--P-VTLPSSRQTLDKSTIARHLLSDQ-TDPFNRSPL 218 (246)
Q Consensus 174 f~cPIt~~lM~D--P-Vilp~sG~tydRs~I~~~L~~~~-~dP~tr~pL 218 (246)
+.|.|+.+-+++ = ++||| +|.|-..||.-||.+.. .||+|++..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC-~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPC-SHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecC-CCchhhccchhhHhhcCccCCCCCCcC
Confidence 699999988764 3 48998 69999999999999986 599998765
No 62
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=82.00 E-value=1.1 Score=40.95 Aligned_cols=63 Identities=10% Similarity=0.083 Sum_probs=48.8
Q ss_pred ccccccccccCCCceecCCCCceecHHHHHHHHhcC--CCCCC--CCCCCCCCCCcccHH--HHHHHHH
Q psy1723 173 EYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD--QTDPF--NRSPLTMEQVIPNTQ--LQTQIQD 235 (246)
Q Consensus 173 ef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~--~~dP~--tr~pLt~~~lipn~~--Lk~~Ie~ 235 (246)
+-.||||.....-|.+...|.|.|||..|...|.-. ..||. |-+.+..+.++-++- +|.+|..
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ 257 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKY 257 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHH
Confidence 467999999999999988889999999999999743 47885 567777777775554 4444443
No 63
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=81.82 E-value=0.62 Score=41.65 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=39.1
Q ss_pred cccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCC
Q psy1723 174 YLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSP 217 (246)
Q Consensus 174 f~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~p 217 (246)
|+|-|+..-++.||++.| ||.|+-.|..+-.....+|-++++.
T Consensus 197 F~C~iCKkdy~spvvt~C-GH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 197 FLCGICKKDYESPVVTEC-GHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred eeehhchhhccchhhhhc-chhHHHHHHHHHhccCCcceecchh
Confidence 999999999999999997 8999999988888777888888864
No 64
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=80.42 E-value=1.3 Score=34.19 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=28.6
Q ss_pred ceecCCCCceecHHHHHHHHhcCCCCCCCCCCCC
Q psy1723 186 PVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLT 219 (246)
Q Consensus 186 PVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt 219 (246)
||+--.+.|.|---+|.+||.+.+.||+.|++..
T Consensus 48 ~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 48 PVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred eEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 4555556899999999999999999999998753
No 65
>KOG2879|consensus
Probab=77.91 E-value=2.2 Score=39.71 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=40.4
Q ss_pred CccccccccccCCCceecCCCCceecHHHHHHHHhcCC--CCCCCCCCCC
Q psy1723 172 DEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ--TDPFNRSPLT 219 (246)
Q Consensus 172 def~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~--~dP~tr~pLt 219 (246)
+.-.||+++.--.-|-+.-.|||+|+--||..-+..+. +||.|+++..
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 35789999999999987665699999999999877763 8999998754
No 66
>KOG1039|consensus
Probab=76.29 E-value=1.8 Score=41.36 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=40.8
Q ss_pred CCccccccccccCCCce-------ecCCCCceecHHHHHHHH--hc-----CCCCCCCCCCCC
Q psy1723 171 PDEYLDPIMNTIMLEPV-------TLPSSRQTLDKSTIARHL--LS-----DQTDPFNRSPLT 219 (246)
Q Consensus 171 Pdef~cPIt~~lM~DPV-------ilp~sG~tydRs~I~~~L--~~-----~~~dP~tr~pLt 219 (246)
-.+..|-|+.+...+++ |+|.|.|+|+-.+|..|- .. ...|||+|.+.+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45889999998888888 678779999999999998 44 247999998754
No 67
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=76.20 E-value=0.4 Score=35.26 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=24.1
Q ss_pred ccccccccccCC-C---ceec---CCCCceecHHHHHHHHhcC-----------CCCCCCCCCCCC
Q psy1723 173 EYLDPIMNTIML-E---PVTL---PSSRQTLDKSTIARHLLSD-----------QTDPFNRSPLTM 220 (246)
Q Consensus 173 ef~cPIt~~lM~-D---PVil---p~sG~tydRs~I~~~L~~~-----------~~dP~tr~pLt~ 220 (246)
+.-|+|++.... + |++. +.+|.+|-..++.+||++. |+||+++++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 346899887654 2 4432 3678999999999999852 369999998764
No 68
>KOG1785|consensus
Probab=75.79 E-value=1.2 Score=43.51 Aligned_cols=52 Identities=25% Similarity=0.194 Sum_probs=41.4
Q ss_pred hcCCCCcc-ccccccccCCCceecCCCCceecHHHHHHHHhcC--CCCCCCCCCCC
Q psy1723 167 LAGAPDEY-LDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD--QTDPFNRSPLT 219 (246)
Q Consensus 167 ~~~iPdef-~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~--~~dP~tr~pLt 219 (246)
+-+.-..| +|-|+.+==+|=-|-|| ||-.+-+|+..|=.++ ++|||||-.+.
T Consensus 362 YceMgsTFeLCKICaendKdvkIEPC-GHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 362 YCEMGSTFELCKICAENDKDVKIEPC-GHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHccchHHHHHHhhccCCCcccccc-cchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 33444445 79999998899888897 8999999999998776 59999985543
No 69
>KOG0828|consensus
Probab=74.75 E-value=1.7 Score=43.50 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=27.9
Q ss_pred eecCCCCceecHHHHHHHHhcCC-CCCCCCCCCCC
Q psy1723 187 VTLPSSRQTLDKSTIARHLLSDQ-TDPFNRSPLTM 220 (246)
Q Consensus 187 Vilp~sG~tydRs~I~~~L~~~~-~dP~tr~pLt~ 220 (246)
.++|| .|+|-|+|+++|...-. .||.||.||..
T Consensus 602 m~tPC-~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 602 MLTPC-HHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccch-HHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 45687 79999999999998555 89999999864
No 70
>KOG1645|consensus
Probab=74.16 E-value=2.1 Score=41.87 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=49.2
Q ss_pred ccccccccccCCCce----ecCCCCceecHHHHHHHHhcC--CCCCCCCCCCCCCCCcccHHHHHHHH
Q psy1723 173 EYLDPIMNTIMLEPV----TLPSSRQTLDKSTIARHLLSD--QTDPFNRSPLTMEQVIPNTQLQTQIQ 234 (246)
Q Consensus 173 ef~cPIt~~lM~DPV----ilp~sG~tydRs~I~~~L~~~--~~dP~tr~pLt~~~lipn~~Lk~~Ie 234 (246)
.-+|||+.+=..-|+ +.+.|||-|--++|++||.+. ..||.+...-+..++.|-..||...+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~ 71 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAM 71 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHH
Confidence 457999988777775 455569999999999999643 48999988888888888887776544
No 71
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.21 E-value=2.8 Score=34.24 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=24.8
Q ss_pred ccccccc----ccCCCceecCCCCceecHHHHHH
Q psy1723 174 YLDPIMN----TIMLEPVTLPSSRQTLDKSTIAR 203 (246)
Q Consensus 174 f~cPIt~----~lM~DPVilp~sG~tydRs~I~~ 203 (246)
=+||=|+ .|=+||++.|.+|.+|-|+.++.
T Consensus 10 ridPetg~KFYDLNrdPiVsPytG~s~P~s~fe~ 43 (129)
T COG4530 10 RIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEE 43 (129)
T ss_pred ccCccccchhhccCCCccccCcccccchHHHHHh
Confidence 3577765 57789999999999999988765
No 72
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=69.94 E-value=2 Score=46.18 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=36.2
Q ss_pred ccccccccCC-----Cce-ecCCCCceecHHHHHHHHhcC--CCCCCCCCCCC
Q psy1723 175 LDPIMNTIML-----EPV-TLPSSRQTLDKSTIARHLLSD--QTDPFNRSPLT 219 (246)
Q Consensus 175 ~cPIt~~lM~-----DPV-ilp~sG~tydRs~I~~~L~~~--~~dP~tr~pLt 219 (246)
-||||..+.. =|- ..|+|.+-|--+|+-+|+.+. ++||.||..++
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 4999998865 243 456778889999999999987 49999997665
No 73
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=68.95 E-value=3.6 Score=34.40 Aligned_cols=48 Identities=19% Similarity=0.127 Sum_probs=35.4
Q ss_pred CCC-ccccccccccCCC--cee-cCCCC-----ceecHHHHHHHHhcCCCCCCCCCC
Q psy1723 170 APD-EYLDPIMNTIMLE--PVT-LPSSR-----QTLDKSTIARHLLSDQTDPFNRSP 217 (246)
Q Consensus 170 iPd-ef~cPIt~~lM~D--PVi-lp~sG-----~tydRs~I~~~L~~~~~dP~tr~p 217 (246)
-|+ ..-|.|+.+-..+ =|| ++++| +.|+.+|+.+|-.....|||+|..
T Consensus 22 w~~~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~I 78 (134)
T PF05883_consen 22 WPRCTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNRNI 78 (134)
T ss_pred ccccCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcccce
Confidence 444 5569999977776 664 45543 238899999997777899999974
No 74
>KOG1734|consensus
Probab=67.53 E-value=1.2 Score=41.55 Aligned_cols=66 Identities=17% Similarity=0.328 Sum_probs=48.4
Q ss_pred CccccccccccCCCce----------ecCCCCceecHHHHHHHHh--cCCCCCCCCCCCCCCCCcccHH-----HHHHHH
Q psy1723 172 DEYLDPIMNTIMLEPV----------TLPSSRQTLDKSTIARHLL--SDQTDPFNRSPLTMEQVIPNTQ-----LQTQIQ 234 (246)
Q Consensus 172 def~cPIt~~lM~DPV----------ilp~sG~tydRs~I~~~L~--~~~~dP~tr~pLt~~~lipn~~-----Lk~~Ie 234 (246)
++=.|.+++.=..+-| .|.| +|+|---||..|-. +.++||+|++.++...+..|+. +--++-
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsC-nHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnpWekph~~yg~Ll 301 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSC-NHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWEKPHVWYGQLL 301 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeec-ccchHHHhhhhheeecCCCCCchHHHHhhHhhhccCccccchhHHHHHH
Confidence 4567888887666666 6676 79999999999954 3489999999988877777653 334444
Q ss_pred HHHH
Q psy1723 235 DWIR 238 (246)
Q Consensus 235 ~w~~ 238 (246)
+|++
T Consensus 302 dwlR 305 (328)
T KOG1734|consen 302 DWLR 305 (328)
T ss_pred HHHH
Confidence 5543
No 75
>KOG1001|consensus
Probab=61.84 E-value=1.5 Score=45.32 Aligned_cols=50 Identities=8% Similarity=0.060 Sum_probs=41.4
Q ss_pred cccccccccCCCceecCCCCceecHHHHHHHHhcC--CCCCCCCCCCCCCCCcc
Q psy1723 174 YLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD--QTDPFNRSPLTMEQVIP 225 (246)
Q Consensus 174 f~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~--~~dP~tr~pLt~~~lip 225 (246)
+.|+|+.+ -.+||+++| ||.++++|+...+... ..||.+|..+....+..
T Consensus 455 ~~c~ic~~-~~~~~it~c-~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRC-GHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-cccceeecc-cchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 89999999 899999997 8999999999977654 46999987776655544
No 76
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=58.29 E-value=6 Score=31.75 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=22.3
Q ss_pred ccccccc----ccCCCceecCCCCceecHH
Q psy1723 174 YLDPIMN----TIMLEPVTLPSSRQTLDKS 199 (246)
Q Consensus 174 f~cPIt~----~lM~DPVilp~sG~tydRs 199 (246)
-+||=|+ .|-++|++.|.||.+|.-+
T Consensus 10 R~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 4677775 6889999999999999988
No 77
>KOG2930|consensus
Probab=56.96 E-value=7.8 Score=31.30 Aligned_cols=28 Identities=14% Similarity=0.231 Sum_probs=24.6
Q ss_pred CCCCceecHHHHHHHHhcCCCCCCCCCC
Q psy1723 190 PSSRQTLDKSTIARHLLSDQTDPFNRSP 217 (246)
Q Consensus 190 p~sG~tydRs~I~~~L~~~~~dP~tr~p 217 (246)
-.++|.|---+|.+||.+++.||+..++
T Consensus 79 G~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 79 GVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 3458999999999999999999998765
No 78
>KOG4185|consensus
Probab=56.31 E-value=9.6 Score=34.61 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=39.0
Q ss_pred ceecCCCCceecHHHHHHHHhcC-CCCCCCCCCC-----CCCCCcccHHHHHHHHHH
Q psy1723 186 PVTLPSSRQTLDKSTIARHLLSD-QTDPFNRSPL-----TMEQVIPNTQLQTQIQDW 236 (246)
Q Consensus 186 PVilp~sG~tydRs~I~~~L~~~-~~dP~tr~pL-----t~~~lipn~~Lk~~Ie~w 236 (246)
|=+|.+ ||+++..++...+... ..|||+|.+. ....+..|.+|-+.|+..
T Consensus 22 p~~l~c-~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 22 PRVLKC-GHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred Cccccc-CceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 445555 8999999999988766 4789999983 235677889998888775
No 79
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=56.03 E-value=15 Score=25.07 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=25.5
Q ss_pred cCCCceecCCC--C--ceecHHHHHHHHhcCC--CCCCCC
Q psy1723 182 IMLEPVTLPSS--R--QTLDKSTIARHLLSDQ--TDPFNR 215 (246)
Q Consensus 182 lM~DPVilp~s--G--~tydRs~I~~~L~~~~--~dP~tr 215 (246)
--.+|.+.|+. | +.+-++++.+|+...+ +||+.+
T Consensus 10 ~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 10 DEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 34678888852 2 6799999999997764 788753
No 80
>KOG4642|consensus
Probab=50.49 E-value=2.6 Score=38.98 Aligned_cols=63 Identities=17% Similarity=0.088 Sum_probs=56.2
Q ss_pred cCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHH
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQ 232 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~ 232 (246)
-.+|..|.|.|. ..|+.=.+.|. |.+|.+.-+.-||.-+..+|.+-.+.+.-+|+||...+-.
T Consensus 20 ~f~~k~y~~ai~-~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~ 82 (284)
T KOG4642|consen 20 CFIPKRYDDAID-CYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHY 82 (284)
T ss_pred ccchhhhchHHH-HHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHH
Confidence 569999999999 99999999998 7999999999999988899999888888899999766543
No 81
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=50.38 E-value=8.1 Score=34.67 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=20.6
Q ss_pred ccccccccccCC---CceecCCCCceecHH
Q psy1723 173 EYLDPIMNTIML---EPVTLPSSRQTLDKS 199 (246)
Q Consensus 173 ef~cPIt~~lM~---DPVilp~sG~tydRs 199 (246)
.|.||+|+..|. .....+. ||+||.+
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~-~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQ-NHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCC-CCCCccc
Confidence 389999999885 4456665 8999976
No 82
>KOG0804|consensus
Probab=50.12 E-value=7.2 Score=38.67 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=35.1
Q ss_pred ccccccccCCCce---ecCCCCceecHHHHHHHHhcCCCCCCCCCCCC
Q psy1723 175 LDPIMNTIMLEPV---TLPSSRQTLDKSTIARHLLSDQTDPFNRSPLT 219 (246)
Q Consensus 175 ~cPIt~~lM~DPV---ilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt 219 (246)
+||++.+=|.+-| ++--|.|+|--+|+.+|- +.+||++|--.+
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 6999999999988 433348999999999996 568999886554
No 83
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=49.73 E-value=7.5 Score=26.71 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=10.2
Q ss_pred hhcCCCCccccccccc
Q psy1723 166 LLAGAPDEYLDPIMNT 181 (246)
Q Consensus 166 ~~~~iPdef~cPIt~~ 181 (246)
.+.++|++|.||+++.
T Consensus 27 ~F~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 27 PFEDLPDDWVCPVCGA 42 (47)
T ss_dssp -GGGS-TT-B-TTTSS
T ss_pred CHHHCCCCCcCcCCCC
Confidence 3788999999999864
No 84
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=48.78 E-value=8 Score=26.90 Aligned_cols=15 Identities=20% Similarity=0.654 Sum_probs=12.9
Q ss_pred hcCCCCccccccccc
Q psy1723 167 LAGAPDEYLDPIMNT 181 (246)
Q Consensus 167 ~~~iPdef~cPIt~~ 181 (246)
+.++|++|.||+++.
T Consensus 28 f~~Lp~~w~CP~C~a 42 (50)
T cd00730 28 FEDLPDDWVCPVCGA 42 (50)
T ss_pred HhHCCCCCCCCCCCC
Confidence 567999999999863
No 85
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=48.18 E-value=12 Score=26.77 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=29.8
Q ss_pred ccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy1723 179 MNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQ 222 (246)
Q Consensus 179 t~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~ 222 (246)
.+..=...+++|+ ||.+.+.+.--+ .-+-|||++.|+..++
T Consensus 13 ~~~~~~~~~~~pC-gH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 13 CGFVGTKGTVLPC-GHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred ccccccccccccc-cceeeccccChh--hccCCCCCCCcccCCC
Confidence 3344456889997 899999886532 2257999999987764
No 86
>KOG0883|consensus
Probab=47.04 E-value=17 Score=35.82 Aligned_cols=68 Identities=18% Similarity=0.390 Sum_probs=43.9
Q ss_pred CCCCccccccccccCCCc---eecCCCCceecHHHHHHHHh-cC------CCCCCCCCCC-CCCCCcccHHHHHHHHHHH
Q psy1723 169 GAPDEYLDPIMNTIMLEP---VTLPSSRQTLDKSTIARHLL-SD------QTDPFNRSPL-TMEQVIPNTQLQTQIQDWI 237 (246)
Q Consensus 169 ~iPdef~cPIt~~lM~DP---Vilp~sG~tydRs~I~~~L~-~~------~~dP~tr~pL-t~~~lipn~~Lk~~Ie~w~ 237 (246)
..-++|.||.++.++.+= |-..++|.+|+-.+|++.-. .. ..-||||+.+ +..| ||.-=+-.+.+|.
T Consensus 97 ns~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~DiItiQd--P~~lek~~~~~F~ 174 (518)
T KOG0883|consen 97 NSEGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADIITIQD--PNNLEKFNMSDFY 174 (518)
T ss_pred CCCCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhceeeecC--cchhhccchhhHH
Confidence 355789999999988774 55566799999999998432 22 2347777754 3322 4444444455554
Q ss_pred H
Q psy1723 238 R 238 (246)
Q Consensus 238 ~ 238 (246)
+
T Consensus 175 h 175 (518)
T KOG0883|consen 175 H 175 (518)
T ss_pred H
Confidence 3
No 87
>KOG4265|consensus
Probab=43.85 E-value=19 Score=34.54 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=38.4
Q ss_pred ccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCC
Q psy1723 173 EYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTM 220 (246)
Q Consensus 173 ef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~ 220 (246)
.=-|=|+.+=-+|=|+|||-.-..+.+|-...--..+.||+||+|+..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 356999999999999999854457888877765566789999999753
No 88
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=41.38 E-value=96 Score=27.70 Aligned_cols=87 Identities=8% Similarity=-0.001 Sum_probs=69.0
Q ss_pred hhccCCChhhhhhhhHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHhcCCCccCcc
Q psy1723 12 LEFHVGHESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCH-STMVDRIAAMLNYFLFHLVGPKMRNFK 90 (246)
Q Consensus 12 ~~w~~l~~~~r~~~~~~l~~~~~~a~~~~~l~~eti~~l~~lt~~~~~~F~~-~eiv~Rla~mLn~~L~~LvGpk~~~Lk 90 (246)
+.|-.|++++|+.-..+-+.+.....--..+|.+-|.+=...-.++-..|+- +...+||..++..+-..+-. +
T Consensus 38 G~~v~L~~~Q~q~l~~Y~~~lr~~lP~~~~~a~d~l~la~~ald~V~~~~~g~~~~~~~l~~l~~~l~~~~~~------~ 111 (229)
T PF11101_consen 38 GKKVSLNAEQQQALQQYQQGLRQQLPWVVQLASDGLELARDALDEVATSLLGDSNARDRLKQLMDQLKQQVDR------R 111 (229)
T ss_pred CEEccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH------H
Confidence 4799999999998877777777766666778888888887777888888888 99999999998877766643 2
Q ss_pred c-cCCCCCCCCCccccchhh
Q psy1723 91 T-SRRSPGKQEGVGSIPAER 109 (246)
Q Consensus 91 V-kn~e~~~~~~y~F~Pk~l 109 (246)
+ ++... |-|.|..+
T Consensus 112 ~~~~~d~-----~~l~~~~~ 126 (229)
T PF11101_consen 112 FYQRGDG-----FVLHAQAF 126 (229)
T ss_pred heeCCCc-----EEEcHHHH
Confidence 2 35666 88999887
No 89
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=40.23 E-value=18 Score=28.15 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=18.5
Q ss_pred eecCCCCceecHHHHHHHHhcCCCCCCC
Q psy1723 187 VTLPSSRQTLDKSTIARHLLSDQTDPFN 214 (246)
Q Consensus 187 Vilp~sG~tydRs~I~~~L~~~~~dP~t 214 (246)
|..|. |+.||+..|.+-|.+...-||+
T Consensus 10 VtIp~-G~KYdK~wLl~~iq~~c~v~F~ 36 (88)
T PF09162_consen 10 VTIPY-GKKYDKDWLLNSIQSHCSVPFT 36 (88)
T ss_dssp EEETT-GGGS-HHHHHHHHHHHSSS---
T ss_pred EEecC-CcccCHHHHHHHHHHHCCCCee
Confidence 78898 8999999999988764334554
No 90
>COG5634 Uncharacterized conserved protein [Function unknown]
Probab=39.64 E-value=30 Score=30.65 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=55.7
Q ss_pred hhhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHhh
Q psy1723 165 ALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCR 241 (246)
Q Consensus 165 ~~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~~ 241 (246)
+.+-=+-..|.+|||.+|..=|.=|+. +.+-|.-+ |....-.||---+||..++-=|+.+|...|+++++...
T Consensus 51 ~~~~~~d~nft~plt~~l~ql~~gl~~--q~~~~~~~--~~~~~lldpr~MkPlPy~~~Gp~nDlNd~ie~yl~~a~ 123 (223)
T COG5634 51 NVYFYADLNFTDPLTEKLGQLPYGLQT--QDFPRLDY--WQDRSLLDPRRMKPLPYADEGPRNDLNDIIEEYLSIAT 123 (223)
T ss_pred ceEEEeecccCchhHHHHhcCCcCccc--CccchhHH--hccccccCHhHcCCCCcCCCCCcccHHHHHHHHHHHhc
Confidence 334456678999999999998887775 45555432 33333478988889999888999999999999997644
No 91
>KOG1493|consensus
Probab=36.91 E-value=6.7 Score=30.06 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=26.3
Q ss_pred ceecCCCCceecHHHHHHHHhcC---CCCCCCCCCCC
Q psy1723 186 PVTLPSSRQTLDKSTIARHLLSD---QTDPFNRSPLT 219 (246)
Q Consensus 186 PVilp~sG~tydRs~I~~~L~~~---~~dP~tr~pLt 219 (246)
|.++-.+.|.|-+-+|.+|+... +.||.+|+...
T Consensus 45 PLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 45 PLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 44554557899999999999754 58999998654
No 92
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=35.28 E-value=20 Score=29.82 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=23.4
Q ss_pred cccccccc----ccCCCceecCCCCceecHHHH
Q psy1723 173 EYLDPIMN----TIMLEPVTLPSSRQTLDKSTI 201 (246)
Q Consensus 173 ef~cPIt~----~lM~DPVilp~sG~tydRs~I 201 (246)
-.+||=|+ .|=++|++.|.||.+|..+..
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~~~ 41 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGEQFPPEEA 41 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCCccCcchh
Confidence 45788876 466899999999999988843
No 93
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=34.58 E-value=27 Score=31.30 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=27.7
Q ss_pred CCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCC
Q psy1723 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPL 218 (246)
Q Consensus 171 Pdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pL 218 (246)
-.-|+||.|+.++-|-|-- =-+.+|-.|+. .||-|.+..
T Consensus 85 kkIYICPFTGKVF~DNt~~------nPQDAIYDWvS---kCPeN~ER~ 123 (238)
T PF10915_consen 85 KKIYICPFTGKVFGDNTHP------NPQDAIYDWVS---KCPENTERQ 123 (238)
T ss_pred ceEEEcCCcCccccCCCCC------ChHHHHHHHHh---hCCccchhc
Confidence 3469999999999987632 22478888985 477775543
No 94
>KOG0827|consensus
Probab=34.52 E-value=21 Score=34.99 Aligned_cols=46 Identities=9% Similarity=-0.037 Sum_probs=30.9
Q ss_pred CccccccccccCCCce----ecCCCCceecHHHHHHHHhcCC---CCCCCCCCC
Q psy1723 172 DEYLDPIMNTIMLEPV----TLPSSRQTLDKSTIARHLLSDQ---TDPFNRSPL 218 (246)
Q Consensus 172 def~cPIt~~lM~DPV----ilp~sG~tydRs~I~~~L~~~~---~dP~tr~pL 218 (246)
-.-+|.|+-+.. +=| -+-.|||+|+-.|+.+|+...+ +||.++-.+
T Consensus 3 i~A~C~Ic~d~~-p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 3 IMAECHICIDGR-PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ccceeeEeccCC-ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 344677774432 211 1233599999999999999774 799998433
No 95
>COG1773 Rubredoxin [Energy production and conversion]
Probab=34.06 E-value=20 Score=25.66 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=13.4
Q ss_pred hcCCCCccccccccc
Q psy1723 167 LAGAPDEYLDPIMNT 181 (246)
Q Consensus 167 ~~~iPdef~cPIt~~ 181 (246)
+.++|+++.||.++.
T Consensus 30 fedlPd~w~CP~Cg~ 44 (55)
T COG1773 30 FEDLPDDWVCPECGV 44 (55)
T ss_pred hhhCCCccCCCCCCC
Confidence 689999999999874
No 96
>KOG0314|consensus
Probab=33.42 E-value=19 Score=35.71 Aligned_cols=71 Identities=17% Similarity=0.291 Sum_probs=55.7
Q ss_pred hcCCCCccccccc-cccCCCceec-CCCCceecHHHHHHHHhcCCCCCCC-CCCCCCCCCcccHHHHHHHHHHHH
Q psy1723 167 LAGAPDEYLDPIM-NTIMLEPVTL-PSSRQTLDKSTIARHLLSDQTDPFN-RSPLTMEQVIPNTQLQTQIQDWIR 238 (246)
Q Consensus 167 ~~~iPdef~cPIt-~~lM~DPVil-p~sG~tydRs~I~~~L~~~~~dP~t-r~pLt~~~lipn~~Lk~~Ie~w~~ 238 (246)
....|+++.||++ ...|.|-+++ .+++.+++-.+|..++.... +|.+ .....-..+.|+.-|+..+..=.+
T Consensus 213 v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~-~~~c~~~~~~~~~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 213 VGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKS-MCVCGASNVLADDLLPPKTLRDTINRILA 286 (448)
T ss_pred hccCCccccCceecchhhHHHHHhhhhhcccCCcccccccccccc-CCcchhhcccccccCCchhhHHHHHHHHh
Confidence 4778999999999 7999999987 78899999999999998754 4443 234556778888888877766543
No 97
>KOG3800|consensus
Probab=32.63 E-value=37 Score=32.00 Aligned_cols=46 Identities=17% Similarity=0.070 Sum_probs=33.8
Q ss_pred ccccc-ccCCCce----ecCCCCceecHHHHHHHHhcC-CCCCCCCCCCCCCC
Q psy1723 176 DPIMN-TIMLEPV----TLPSSRQTLDKSTIARHLLSD-QTDPFNRSPLTMEQ 222 (246)
Q Consensus 176 cPIt~-~lM~DPV----ilp~sG~tydRs~I~~~L~~~-~~dP~tr~pLt~~~ 222 (246)
||++. +....|- +.|| ||+.+.+|..+.+..+ +.||-|+.+|....
T Consensus 3 Cp~CKt~~Y~np~lk~~in~C-~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n 54 (300)
T KOG3800|consen 3 CPKCKTDRYLNPDLKLMINEC-GHRLCESCVDRIFSLGPAQCPECMVILRKNN 54 (300)
T ss_pred CcccccceecCccceeeeccc-cchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence 67765 4455553 3375 8999999999977666 59999998886543
No 98
>PF11502 BCL9: B-cell lymphoma 9 protein; InterPro: IPR024670 The Wnt pathway plays a role in embryonic development, stem cell growth and tumorigenesis. B-cell lymphoma 9 (BCL9) associates with beta-catenin and Tcf in the nucleus when the Wnt pathway is stimulated leading to the transactivation of Wnt target genes []. This entry represents a beta-catenin binding domain found in BCL9 and BCL9 homologues.; PDB: 3SL9_F 2GL7_C.
Probab=31.41 E-value=25 Score=23.58 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=16.2
Q ss_pred CCChhhhhhhhHHHHHhcccccc
Q psy1723 16 VGHESYRKSDSGFLQHIGMMARF 38 (246)
Q Consensus 16 ~l~~~~r~~~~~~l~~~~~~a~~ 38 (246)
.||+|+|+-+|..|+.+.-+-+.
T Consensus 1 ~LtpeQ~qHRE~qL~tlr~mq~~ 23 (40)
T PF11502_consen 1 NLTPEQRQHRERQLATLRDMQRM 23 (40)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999887755543
No 99
>KOG4275|consensus
Probab=29.47 E-value=28 Score=32.97 Aligned_cols=65 Identities=12% Similarity=-0.003 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhccchhhhhcCCCCccccccccccCCCceecCCCCceec-HHHHHHHHhcCCCCCCCCCCC
Q psy1723 148 RVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLD-KSTIARHLLSDQTDPFNRSPL 218 (246)
Q Consensus 148 ~l~~~v~~~~~~~~~~e~~~~~iPdef~cPIt~~lM~DPVilp~sG~tyd-Rs~I~~~L~~~~~dP~tr~pL 218 (246)
++.+++-++.....++-.... .-.+.+|.|+.+.-.|-|.|++ ||.+- -++ =..-+.||++|+.+
T Consensus 276 el~d~vtrl~k~~~g~~~~~s-~~~~~LC~ICmDaP~DCvfLeC-GHmVtCt~C----Gkrm~eCPICRqyi 341 (350)
T KOG4275|consen 276 ELDDRVTRLYKGNDGEQHSRS-LATRRLCAICMDAPRDCVFLEC-GHMVTCTKC----GKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHHHHhcccccccccc-hhHHHHHHHHhcCCcceEEeec-CcEEeehhh----ccccccCchHHHHH
Confidence 345555555444333222222 1228899999999999999998 77541 111 01113788888743
No 100
>KOG1571|consensus
Probab=28.11 E-value=50 Score=31.84 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=36.6
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCC
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLT 219 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt 219 (246)
..+.|-.-.|-|+.+=-++-|-+|+ ||+.+=..+.+|+ ..||++|+.+.
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpc-Gh~ccct~cs~~l---~~CPvCR~rI~ 347 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPC-GHVCCCTLCSKHL---PQCPVCRQRIR 347 (355)
T ss_pred ccccCCCCceEEecCCccceeeecC-CcEEEchHHHhhC---CCCchhHHHHH
Confidence 4556666789999999999999997 8998833344455 34999998643
No 101
>PF12629 Pox_polyA_pol_C: Poxvirus poly(A) polymerase C-terminal domain; InterPro: IPR024397 Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This is the catalytic subunit. This domain is found at the C terminus of the pox virus PolyA polymerase protein [].; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=27.85 E-value=92 Score=27.82 Aligned_cols=80 Identities=13% Similarity=0.155 Sum_probs=41.2
Q ss_pred HHHHHHHHHH--Hhhhcch-hhHHHHHHHHHHHHHHHh-----c-CCCccCcccc------------CCCCCCCCCcccc
Q psy1723 47 IHTLEYLTSE--IRSIFCH-STMVDRIAAMLNYFLFHL-----V-GPKMRNFKTS------------RRSPGKQEGVGSI 105 (246)
Q Consensus 47 i~~l~~lt~~--~~~~F~~-~eiv~Rla~mLn~~L~~L-----v-Gpk~~~LkVk------------n~e~~~~~~y~F~ 105 (246)
++||+.|++- +-+.-.. ..+.-|+|.+|+|+.... - |+++..++++ +..+ |+|.
T Consensus 2 ln~lKMfSQidRledL~~~~ek~~~R~~TLLeY~~~~~~i~~~g~~~~~~~m~~~~~~~~~~riitvd~k~-----y~~~ 76 (203)
T PF12629_consen 2 LNMLKMFSQIDRLEDLAKNFEKLRARLATLLEYVRYKYNIILNGEWFKSNNMPMPCPIDIDKRIITVDTKK-----YDFS 76 (203)
T ss_dssp HHHHHHTTSHHHHHHHHH-THHHHHHHHHHHHHHHHHHT---SS-----TS-S--EEEETTTTEEEEEGTT-----T-SS
T ss_pred chHHHHHHHHhHHHHHHHCHHHHHHHHHHHHHHHHHHhCcccCCccccccCCCccceecccceEEEEEhhh-----cccc
Confidence 5667776641 2222222 236779999999999877 1 3456666644 3355 8888
Q ss_pred chhh----------HHHHhccCCc-chhhhhhcCcchh
Q psy1723 106 PAER----------KLKLNISTSP-YYYFSLSLPPSLL 132 (246)
Q Consensus 106 Pk~l----------~iy~nl~~~~-~~~F~~av~~~~F 132 (246)
++.. +..+.++..+ ..-| .+|+...|
T Consensus 77 f~k~~vyLDe~~L~~~i~~~~~~d~~~df-e~VsNS~f 113 (203)
T PF12629_consen 77 FKKCYVYLDEPSLSSDILDLNSADDIVDF-ENVSNSAF 113 (203)
T ss_dssp SSEEEEES-HHHHHHHHHHTT-----EE--GGGTSSEE
T ss_pred hheEEEEeCcHHHHHHHHhcccccchhcc-ccccCceE
Confidence 7765 5666666222 2235 66655444
No 102
>COG4460 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.59 E-value=58 Score=26.79 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=22.5
Q ss_pred eecCCCCceecHHHHHHHHhcCC-CCCCCC
Q psy1723 187 VTLPSSRQTLDKSTIARHLLSDQ-TDPFNR 215 (246)
Q Consensus 187 Vilp~sG~tydRs~I~~~L~~~~-~dP~tr 215 (246)
.|+|+ |++.||.++-.|+.+.. ++|--+
T Consensus 41 MitP~-GviLD~~Alg~~frs~racrpGl~ 69 (130)
T COG4460 41 MITPS-GVILDRDALGDHFRSSRACRPGLA 69 (130)
T ss_pred EecCC-ceEeccHHHHHHHHhccCCCCCeE
Confidence 47886 89999999999998874 667543
No 103
>PF09046 AvrPtoB-E3_ubiq: AvrPtoB E3 ubiquitin ligase; InterPro: IPR015133 The E3 ubiquitin ligase protein found in the bacterial protein AvrPtoB inhibits immunity-associated programmed cell death (PCD) when translocated into plant cells, probably by recruiting E2 enzymes and transferring ubiquitin molecules to cellular proteins involved in regulation of PCD and targeting them for degradation. The structure reveals a globular fold centred on a four-stranded beta-sheet that packs against two helices on one face and has three very extended loops connecting the elements of secondary structure, with remarkable homology to the RING-finger and U-box families of proteins involved in ubiquitin ligase complexes in eukaryotes []. ; PDB: 2FD4_A.
Probab=27.11 E-value=43 Score=27.23 Aligned_cols=27 Identities=33% Similarity=0.615 Sum_probs=19.2
Q ss_pred ecHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy1723 196 LDKSTIARHLLSDQTDPFNRSPLTMEQ 222 (246)
Q Consensus 196 ydRs~I~~~L~~~~~dP~tr~pLt~~~ 222 (246)
+|-.-+.+||..++..|.||+||+.+.
T Consensus 88 MDMkKLAq~La~kP~HPm~r~~L~a~n 114 (124)
T PF09046_consen 88 MDMKKLAQFLAGKPEHPMNRQPLDAEN 114 (124)
T ss_dssp EEHHHHHHHHHHS-B-TTT--B-STTT
T ss_pred eeHHHHHHHhccCCCCCcccCCcchHh
Confidence 677889999999999999999998764
No 104
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=24.84 E-value=65 Score=26.29 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=19.5
Q ss_pred ceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCC
Q psy1723 186 PVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTME 221 (246)
Q Consensus 186 PVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~ 221 (246)
.|..|+||+. + .-|-....|++||+|||.+
T Consensus 69 ~V~CP~C~K~----T--KmLGr~D~CM~C~~pLTLd 98 (114)
T PF11023_consen 69 QVECPNCGKQ----T--KMLGRVDACMHCKEPLTLD 98 (114)
T ss_pred eeECCCCCCh----H--hhhchhhccCcCCCcCccC
Confidence 3566777542 1 2233345899999999975
No 105
>KOG4172|consensus
Probab=24.80 E-value=20 Score=25.86 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=28.5
Q ss_pred cccccccCCCceecCCCCc-eecHHHHHH-HHhcCCCCCCCCCCC
Q psy1723 176 DPIMNTIMLEPVTLPSSRQ-TLDKSTIAR-HLLSDQTDPFNRSPL 218 (246)
Q Consensus 176 cPIt~~lM~DPVilp~sG~-tydRs~I~~-~L~~~~~dP~tr~pL 218 (246)
|-|+.+--.|-|+--+ || .++-.+=.+ |-..++.||.+|.|+
T Consensus 10 CTICye~pvdsVlYtC-GHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 10 CTICYEHPVDSVLYTC-GHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred eeeeccCcchHHHHHc-chHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 7777666666666676 55 355555444 544668999999874
No 106
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=24.71 E-value=1.1e+02 Score=25.35 Aligned_cols=41 Identities=17% Similarity=0.038 Sum_probs=24.2
Q ss_pred cCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCC--CCCCCCCCCCCC
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ--TDPFNRSPLTME 221 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~--~dP~tr~pLt~~ 221 (246)
..-...|.||- ||..|.=..........+ .||.|+.+|...
T Consensus 94 e~~~~~Y~Cp~-------------C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 94 ETNNAYYKCPN-------------CQSKYTFLEANQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred ccCCcEEECcC-------------CCCEeeHHHHHHhcCCCCcEECCCCCCEEEEc
Confidence 44567899993 356666332222221222 799999988653
No 107
>KOG3113|consensus
Probab=24.41 E-value=56 Score=30.41 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=33.8
Q ss_pred CCCccccccccccCCCceecCCCCceecHHHHHHHHhcCC
Q psy1723 170 APDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ 209 (246)
Q Consensus 170 iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~ 209 (246)
.-..-.|.||+..+..|++.--=|.-|.+..|.+.|++..
T Consensus 31 ~sqw~~CaLtqepL~~Piv~c~lGrLYNKe~vi~~LL~Ks 70 (293)
T KOG3113|consen 31 VSQWRNCALTQEPLRRPIVACGLGRLYNKESVIEFLLDKS 70 (293)
T ss_pred HHHHhhcccccCccccceeeehhhccccHHHHHHHHHhcc
Confidence 3344579999999999998765589999999999998775
No 108
>KOG3002|consensus
Probab=24.10 E-value=1.1e+02 Score=28.78 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=44.6
Q ss_pred CCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q psy1723 169 GAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQD 235 (246)
Q Consensus 169 ~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie~ 235 (246)
...+-+-||++..-|.=|..=-..||.-+=++=.+ ....||++|.|++. +-+.++-..|+.
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g~---~R~~amEkV~e~ 104 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK---VSNKCPTCRLPIGN---IRCRAMEKVAEA 104 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhh---hcccCCcccccccc---HHHHHHHHHHHh
Confidence 35667889999999999997776799887766542 34689999999882 345555555444
No 109
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=22.53 E-value=63 Score=23.08 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=23.7
Q ss_pred ccCCCceec-------CCCCc----eecHHHHHHHHhcCCCCCCC
Q psy1723 181 TIMLEPVTL-------PSSRQ----TLDKSTIARHLLSDQTDPFN 214 (246)
Q Consensus 181 ~lM~DPVil-------p~sG~----tydRs~I~~~L~~~~~dP~t 214 (246)
-+|-+|+.+ ..+|. -++.+.+.+|+.+.+.|=.+
T Consensus 19 IL~YePI~L~el~~~L~~~g~~~~~~~~~~~l~~~lD~~gIt~~~ 63 (64)
T PF09494_consen 19 ILMYEPINLEELHAWLKASGIGFDRKVDPSKLKEWLDSQGITFTT 63 (64)
T ss_pred HHcCCCccHHHHHHHHHHcCCCccceeCHHHHHHHHHHCCceeec
Confidence 356677755 22467 78889999999888866444
No 110
>PLN03086 PRLI-interacting factor K; Provisional
Probab=21.73 E-value=1e+02 Score=31.66 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=39.2
Q ss_pred cCCCCccccccccccC------------CCceecCCCCceecHHHHHHHHhcC-----CCCCCCCCCCC
Q psy1723 168 AGAPDEYLDPIMNTIM------------LEPVTLPSSRQTLDKSTIARHLLSD-----QTDPFNRSPLT 219 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM------------~DPVilp~sG~tydRs~I~~~L~~~-----~~dP~tr~pLt 219 (246)
.+.+..+.||.++.-+ .-|+..| ||..+.|..+.+|+..+ -.||||+..+.
T Consensus 448 ~el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~Cp-Cg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 448 EEAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCP-CGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred cccccCccCCCCCCccchHHHHHHHHhcCCCccCC-CCCCcchhHHHhhhhccCCCCceeCCCCCCccc
Confidence 4566778999987655 3577888 68899999999998754 27999988764
No 111
>PRK10236 hypothetical protein; Provisional
Probab=21.02 E-value=2e+02 Score=26.40 Aligned_cols=21 Identities=5% Similarity=-0.132 Sum_probs=16.8
Q ss_pred hhccCCChhhhhhhhHHHHHh
Q psy1723 12 LEFHVGHESYRKSDSGFLQHI 32 (246)
Q Consensus 12 ~~w~~l~~~~r~~~~~~l~~~ 32 (246)
..|..||++||++-...++..
T Consensus 124 ~a~~kms~eE~~~L~~~l~~~ 144 (237)
T PRK10236 124 NTWKKMDEEHKQEFLHAVDAR 144 (237)
T ss_pred HHHHHCCHHHHHHHHHHHhhh
Confidence 479999999998877666654
Done!