Query psy1723
Match_columns 246
No_of_seqs 219 out of 1060
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 16:38:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m62_A Ubiquitin conjugation f 100.0 5.1E-63 1.8E-67 504.7 14.3 234 5-245 709-963 (968)
2 2kre_A Ubiquitin conjugation f 99.9 3.5E-27 1.2E-31 183.6 0.6 96 149-245 5-100 (100)
3 2kr4_A Ubiquitin conjugation f 99.9 1.5E-25 5.1E-30 169.1 6.7 83 162-245 3-85 (85)
4 1wgm_A Ubiquitin conjugation f 99.9 2.7E-25 9.2E-30 172.4 6.7 85 161-245 10-94 (98)
5 2f42_A STIP1 homology and U-bo 99.9 3.8E-22 1.3E-26 170.6 9.1 75 167-242 100-175 (179)
6 2yu4_A E3 SUMO-protein ligase 99.8 1.8E-20 6.1E-25 143.4 4.4 75 169-243 3-86 (94)
7 2c2l_A CHIP, carboxy terminus 99.8 1.7E-19 5.9E-24 157.9 8.0 75 166-241 201-276 (281)
8 2bay_A PRE-mRNA splicing facto 99.8 3E-19 1E-23 127.4 3.4 56 173-228 3-58 (61)
9 1t1h_A Gspef-atpub14, armadill 99.7 2.3E-18 7.9E-23 125.7 6.1 73 168-241 3-76 (78)
10 3ztg_A E3 ubiquitin-protein li 99.6 8E-15 2.7E-19 110.0 8.0 77 167-243 7-86 (92)
11 3htk_C E3 SUMO-protein ligase 99.4 3.8E-14 1.3E-18 127.6 4.5 76 167-242 175-254 (267)
12 3fl2_A E3 ubiquitin-protein li 99.4 1E-13 3.4E-18 109.7 3.8 75 166-241 45-121 (124)
13 2y43_A E3 ubiquitin-protein li 99.3 8.4E-13 2.9E-17 100.4 4.9 76 167-242 16-91 (99)
14 1z6u_A NP95-like ring finger p 99.3 1.4E-12 4.7E-17 107.6 5.8 73 167-240 72-146 (150)
15 2ckl_A Polycomb group ring fin 99.2 8.2E-12 2.8E-16 96.4 4.7 70 168-238 10-84 (108)
16 3hct_A TNF receptor-associated 99.2 1.3E-11 4.6E-16 96.9 4.5 70 166-236 11-81 (118)
17 2ecw_A Tripartite motif-contai 99.1 7.2E-12 2.5E-16 91.3 1.4 65 167-232 13-83 (85)
18 2csy_A Zinc finger protein 183 99.1 4.9E-11 1.7E-15 87.4 5.8 66 168-235 10-75 (81)
19 1jm7_A BRCA1, breast cancer ty 99.1 8.3E-12 2.8E-16 96.1 1.4 71 170-241 18-91 (112)
20 2yur_A Retinoblastoma-binding 99.1 4.9E-11 1.7E-15 86.4 5.0 61 166-226 8-71 (74)
21 2egp_A Tripartite motif-contai 99.1 2.2E-12 7.4E-17 93.5 -2.8 65 167-232 6-77 (79)
22 1jm7_B BARD1, BRCA1-associated 99.1 1.4E-11 4.8E-16 96.7 1.4 71 168-241 17-88 (117)
23 2ecv_A Tripartite motif-contai 99.1 9.1E-12 3.1E-16 90.7 0.1 65 167-232 13-83 (85)
24 2djb_A Polycomb group ring fin 99.1 1.5E-10 5.2E-15 83.1 6.1 60 167-227 9-69 (72)
25 2ckl_B Ubiquitin ligase protei 99.1 6.4E-11 2.2E-15 97.8 4.7 72 167-239 48-122 (165)
26 3lrq_A E3 ubiquitin-protein li 99.1 3.9E-11 1.3E-15 91.9 2.9 71 167-238 16-88 (100)
27 4ayc_A E3 ubiquitin-protein li 99.1 1.2E-10 4.1E-15 93.9 5.4 65 170-237 50-114 (138)
28 3l11_A E3 ubiquitin-protein li 99.1 3.5E-11 1.2E-15 93.7 1.7 73 168-241 10-90 (115)
29 3hcs_A TNF receptor-associated 99.0 1.4E-10 4.7E-15 96.1 5.0 70 166-236 11-81 (170)
30 2ecy_A TNF receptor-associated 99.0 3E-10 1E-14 80.1 4.6 56 167-223 9-65 (66)
31 1rmd_A RAG1; V(D)J recombinati 98.9 3.6E-10 1.2E-14 88.0 3.6 66 169-235 19-86 (116)
32 2ysl_A Tripartite motif-contai 98.9 8.6E-10 3E-14 78.6 5.1 57 166-223 13-72 (73)
33 3knv_A TNF receptor-associated 98.9 4.2E-10 1.4E-14 91.8 1.6 67 168-235 26-102 (141)
34 3ng2_A RNF4, snurf, ring finge 98.8 2.7E-09 9.4E-14 75.5 4.1 57 169-226 6-69 (71)
35 2ct2_A Tripartite motif protei 98.8 9.9E-09 3.4E-13 75.3 5.8 61 166-227 8-78 (88)
36 1g25_A CDK-activating kinase a 98.8 7.7E-09 2.6E-13 72.5 4.8 54 172-226 2-61 (65)
37 2xeu_A Ring finger protein 4; 98.8 3.7E-09 1.3E-13 73.1 3.1 54 172-226 2-62 (64)
38 2d8t_A Dactylidin, ring finger 98.7 2.3E-09 8E-14 76.6 1.9 55 168-223 10-64 (71)
39 2ysj_A Tripartite motif-contai 98.7 3.2E-08 1.1E-12 68.8 5.6 48 166-214 13-63 (63)
40 2ea6_A Ring finger protein 4; 98.6 2.5E-08 8.6E-13 69.8 4.1 53 167-220 9-68 (69)
41 2ect_A Ring finger protein 126 98.6 3.3E-08 1.1E-12 71.4 4.7 59 168-227 10-71 (78)
42 4ap4_A E3 ubiquitin ligase RNF 98.5 3.8E-08 1.3E-12 76.7 3.4 56 170-226 4-66 (133)
43 2ecj_A Tripartite motif-contai 98.4 1.2E-07 4.3E-12 64.2 3.8 47 167-214 9-58 (58)
44 1chc_A Equine herpes virus-1 r 98.4 2.3E-07 7.7E-12 65.1 4.6 48 172-220 4-52 (68)
45 2kiz_A E3 ubiquitin-protein li 98.4 3.5E-07 1.2E-11 64.5 5.1 54 167-221 8-64 (69)
46 1iym_A EL5; ring-H2 finger, ub 98.4 2.3E-07 7.8E-12 62.5 3.9 50 170-219 2-54 (55)
47 2ecn_A Ring finger protein 141 98.4 8.8E-08 3E-12 67.8 1.4 55 167-223 9-63 (70)
48 2ecm_A Ring finger and CHY zin 98.3 4.6E-07 1.6E-11 60.9 4.1 47 172-219 4-54 (55)
49 2ep4_A Ring finger protein 24; 98.3 8.1E-07 2.8E-11 63.4 5.4 53 167-220 9-64 (74)
50 2l0b_A E3 ubiquitin-protein li 98.3 6.4E-07 2.2E-11 67.1 4.8 52 168-220 35-89 (91)
51 1x4j_A Ring finger protein 38; 98.2 9.6E-07 3.3E-11 63.4 4.3 51 170-221 20-73 (75)
52 2y1n_A E3 ubiquitin-protein li 98.2 9.3E-07 3.2E-11 83.4 4.4 53 171-224 330-383 (389)
53 4ap4_A E3 ubiquitin ligase RNF 98.1 7.9E-07 2.7E-11 69.1 2.4 56 170-226 69-131 (133)
54 1bor_A Transcription factor PM 98.1 6.5E-07 2.2E-11 61.4 1.3 47 171-221 4-50 (56)
55 4ic3_A E3 ubiquitin-protein li 98.1 4.7E-07 1.6E-11 65.6 0.4 48 168-220 19-67 (74)
56 1e4u_A Transcriptional repress 98.1 3.1E-06 1.1E-10 62.4 4.6 55 168-223 6-65 (78)
57 2ecl_A Ring-box protein 2; RNF 98.0 2.3E-06 7.8E-11 62.9 3.0 51 172-222 14-78 (81)
58 1v87_A Deltex protein 2; ring- 98.0 4.4E-06 1.5E-10 64.3 4.7 50 170-220 22-94 (114)
59 2ecg_A Baculoviral IAP repeat- 97.9 2.1E-06 7.3E-11 62.0 1.2 47 169-220 21-68 (75)
60 2vje_A E3 ubiquitin-protein li 97.7 2.7E-05 9.1E-10 54.9 4.3 48 171-219 6-56 (64)
61 3t6p_A Baculoviral IAP repeat- 97.6 7.1E-06 2.4E-10 76.1 -0.3 49 167-220 289-338 (345)
62 2vje_B MDM4 protein; proto-onc 97.6 4.2E-05 1.4E-09 53.7 3.8 47 172-219 6-55 (63)
63 2yho_A E3 ubiquitin-protein li 97.6 1.4E-05 4.7E-10 58.8 0.5 46 170-220 15-61 (79)
64 3dpl_R Ring-box protein 1; ubi 97.4 0.00014 4.8E-09 56.5 4.5 47 173-220 37-101 (106)
65 1wim_A KIAA0161 protein; ring 97.4 6.1E-05 2.1E-09 56.3 2.0 66 171-238 3-83 (94)
66 4a0k_B E3 ubiquitin-protein li 97.0 9.8E-05 3.3E-09 58.7 0.0 46 175-220 50-112 (117)
67 2kkx_A Uncharacterized protein 97.0 0.00058 2E-08 53.0 4.3 59 167-225 21-84 (102)
68 2d8s_A Cellular modulator of i 96.9 0.00076 2.6E-08 49.8 4.1 51 171-221 13-71 (80)
69 2ea5_A Cell growth regulator w 96.9 0.00065 2.2E-08 48.4 3.5 46 170-220 12-58 (68)
70 3i2d_A E3 SUMO-protein ligase 96.8 0.0012 4.2E-08 61.8 5.6 64 171-234 247-314 (371)
71 4fo9_A E3 SUMO-protein ligase 96.4 0.0038 1.3E-07 58.3 5.7 65 170-234 212-280 (360)
72 2ct0_A Non-SMC element 1 homol 95.6 0.018 6.3E-07 42.0 5.1 47 174-220 16-64 (74)
73 3k1l_B Fancl; UBC, ring, RWD, 94.7 0.005 1.7E-07 57.6 -0.2 47 174-220 309-373 (381)
74 1vyx_A ORF K3, K3RING; zinc-bi 90.8 0.31 1.1E-05 33.6 4.4 49 172-220 5-59 (60)
75 3nw0_A Non-structural maintena 81.1 1.8 6.2E-05 37.6 5.0 49 173-221 180-230 (238)
76 2jun_A Midline-1; B-BOX, TRIM, 77.2 1.3 4.6E-05 32.5 2.5 33 172-205 2-38 (101)
77 3vk6_A E3 ubiquitin-protein li 73.5 3.7 0.00013 31.6 4.1 44 175-219 3-48 (101)
78 6rxn_A Rubredoxin; electron tr 62.4 2.6 8.8E-05 27.9 1.0 15 167-181 24-38 (46)
79 4rxn_A Rubredoxin; electron tr 58.7 3.2 0.00011 28.4 1.0 15 167-181 30-44 (54)
80 1e8j_A Rubredoxin; iron-sulfur 57.4 3.8 0.00013 27.7 1.2 15 167-181 30-44 (52)
81 2kn9_A Rubredoxin; metalloprot 54.0 4.5 0.00015 29.9 1.2 16 167-182 54-69 (81)
82 1yk4_A Rubredoxin, RD; electro 53.3 4.5 0.00015 27.3 1.0 15 167-181 29-43 (52)
83 2v3b_B Rubredoxin 2, rubredoxi 52.7 4.5 0.00015 27.6 1.0 15 167-181 30-44 (55)
84 1dx8_A Rubredoxin; electron tr 52.0 4.7 0.00016 28.9 1.0 16 167-182 34-49 (70)
85 2fd4_A Avirulence protein AVRP 50.3 15 0.0005 28.6 3.6 56 167-222 32-112 (122)
86 1s24_A Rubredoxin 2; electron 48.4 5.7 0.0002 29.7 1.0 15 167-181 62-76 (87)
87 3mjh_B Early endosome antigen 31.6 5.9 0.0002 24.6 -1.0 18 172-189 4-21 (34)
88 2jvx_A NF-kappa-B essential mo 24.7 21 0.00071 21.2 0.6 17 171-187 1-17 (28)
89 3pwf_A Rubrerythrin; non heme 21.9 40 0.0014 27.5 2.0 14 170-183 135-148 (170)
No 1
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=100.00 E-value=5.1e-63 Score=504.72 Aligned_cols=234 Identities=31% Similarity=0.454 Sum_probs=215.3
Q ss_pred eeccccchhccC-CChhhhhhhhHHHHHhcccccchhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHhcC
Q psy1723 5 RLTVTTTLEFHV-GHESYRKSDSGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFCHSTMVDRIAAMLNYFLFHLVG 83 (246)
Q Consensus 5 ~~~~~~~~~w~~-l~~~~r~~~~~~l~~~~~~a~~~~~l~~eti~~l~~lt~~~~~~F~~~eiv~Rla~mLn~~L~~LvG 83 (246)
+.+++|.+.|.. ..+++|+++++.+++++++||||++||++||+||++||+++|++|++||||+|||+||||||.+|||
T Consensus 709 Q~e~~~~~~~~~~~~ee~~~~~~~~l~~~er~a~s~~~La~etv~ml~~~T~~i~~~F~~peiv~RlA~MLnynL~~LvG 788 (968)
T 3m62_A 709 QNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLESLVG 788 (968)
T ss_dssp HHHHHTSSCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhhccCCccchhHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHhchhhccHHHHHHHHHHHHHHHHHhcC
Confidence 345677777765 4567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCccccCCCCCCCCCccccchhh-----HHHHhccCCcchhhhhhc-------Ccchh-----hHhhh-c--CCCch
Q psy1723 84 PKMRNFKTSRRSPGKQEGVGSIPAER-----KLKLNISTSPYYYFSLSL-------PPSLL-----YLARI-G--GASLI 143 (246)
Q Consensus 84 pk~~~LkVkn~e~~~~~~y~F~Pk~l-----~iy~nl~~~~~~~F~~av-------~~~~F-----~l~~i-~--~~~~i 143 (246)
|||++|||+||++ |+|+||+| +||+||++++. |+.|| ++++| ||.|. + .+..+
T Consensus 789 Pk~~~LKVknpek-----Y~F~Pk~lL~~i~~IYlnL~~~~~--F~~aVa~DgRSy~~elF~~a~~il~~~~~l~~~~~i 861 (968)
T 3m62_A 789 PKCGELKVKDPQS-----YSFNPKDLLKALTTVYINLSEQSE--FISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFI 861 (968)
T ss_dssp HHHHTCCCSCGGG-----GTCCHHHHHHHHHHHHHHTTTCHH--HHHHHHHCTTTCCHHHHHHHHHHHTTSTTSSCHHHH
T ss_pred ccccccccCCHhh-----cCCCHHHHHHHHHHHHhhccCChH--HHHHHHhcCCCCCHHHHHHHHHHHHHhhcCCCHHHH
Confidence 9999999999999 99999999 99999998888 99999 78999 66543 2 35678
Q ss_pred hHHHHHHHHHHHHHhhccchhhhhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCC
Q psy1723 144 PDLRRVAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQV 223 (246)
Q Consensus 144 ~~~~~l~~~v~~~~~~~~~~e~~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~l 223 (246)
++|.+|++++++.+++.+++|+++.++|++|+||||+++|+|||++|+||+||||++|++||.++++||+||+||+.++|
T Consensus 862 ~~~~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 862 EKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV 941 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence 99999999999999888888889999999999999999999999999866899999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhhhhc
Q psy1723 224 IPNTQLQTQIQDWIRQCRQKSL 245 (246)
Q Consensus 224 ipn~~Lk~~Ie~w~~~~~~~~~ 245 (246)
+||.+||++|++|+.+++++|+
T Consensus 942 iPN~~Lk~~I~~w~~~~~~~~~ 963 (968)
T 3m62_A 942 TPNEELRQKILCFKKQKKEEAK 963 (968)
T ss_dssp EECHHHHHHHHHHHHHHHTTC-
T ss_pred cccHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999887663
No 2
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.92 E-value=3.5e-27 Score=183.65 Aligned_cols=96 Identities=43% Similarity=0.674 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhccchhhhhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHH
Q psy1723 149 VAVLVEKLGAQLQSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQ 228 (246)
Q Consensus 149 l~~~v~~~~~~~~~~e~~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~ 228 (246)
|+++++++.++..+.|.+..++|++|+||||+++|+|||++|+ ||+|||++|.+|+.++++||+||++++..+|+||..
T Consensus 5 ~~~~~~~~~~~~~~~e~~~~~~p~~~~CpI~~~~m~dPV~~~c-Ghtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~ 83 (100)
T 2kre_A 5 FAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPS-GTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPE 83 (100)
T ss_dssp SSSCCCCSCSCSSCSSCSCSSCSTTTBCTTTCSBCSSEEEETT-TEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHH
T ss_pred HHHHHHHHHHhhcchhhhhccCcHhhCCcCccCcccCCeECCC-CCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHH
Confidence 3444555555555566778999999999999999999999995 899999999999998889999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhc
Q psy1723 229 LQTQIQDWIRQCRQKSL 245 (246)
Q Consensus 229 Lk~~Ie~w~~~~~~~~~ 245 (246)
||+.|+.|+.+++++++
T Consensus 84 Lk~~I~~~~~~~~~~~~ 100 (100)
T 2kre_A 84 LKEQIQAWMREKQNSDH 100 (100)
T ss_dssp HHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHhhhccC
Confidence 99999999999887653
No 3
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.92 E-value=1.5e-25 Score=169.13 Aligned_cols=83 Identities=46% Similarity=0.751 Sum_probs=77.5
Q ss_pred chhhhhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHhh
Q psy1723 162 SDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCR 241 (246)
Q Consensus 162 ~~e~~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~~ 241 (246)
++|+++.++|++|+||||+++|+|||++|+ ||+|||++|.+|+.++++||+||++++..+|+||..||+.|++|+.+++
T Consensus 3 ~~e~~~~~~p~~~~CpI~~~~m~dPV~~~c-Ghtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 3 SAEIDYSDAPDEFRDPLMDTLMTDPVRLPS-GTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCCCCCTTCCTTTBCTTTCSBCSSEEECTT-SCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcCchheECcccCchhcCCeECCC-CCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 456678899999999999999999999995 8999999999999988999999999999999999999999999999998
Q ss_pred hhhc
Q psy1723 242 QKSL 245 (246)
Q Consensus 242 ~~~~ 245 (246)
++|+
T Consensus 82 ~~~~ 85 (85)
T 2kr4_A 82 SSDH 85 (85)
T ss_dssp HTCC
T ss_pred hccC
Confidence 7764
No 4
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.91 E-value=2.7e-25 Score=172.39 Aligned_cols=85 Identities=64% Similarity=0.969 Sum_probs=77.4
Q ss_pred cchhhhhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHh
Q psy1723 161 QSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQC 240 (246)
Q Consensus 161 ~~~e~~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~ 240 (246)
++++++..++|++|+||||.++|+|||++|+|||+|||++|.+|+..+++||+||++++.++|+||..||+.|++|+.++
T Consensus 10 ~~~~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 10 QQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp CSCCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred ccchhhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence 34566688999999999999999999999984499999999999998889999999999999999999999999999988
Q ss_pred hhhhc
Q psy1723 241 RQKSL 245 (246)
Q Consensus 241 ~~~~~ 245 (246)
+.++.
T Consensus 90 ~~~~~ 94 (98)
T 1wgm_A 90 KQQSG 94 (98)
T ss_dssp TTCSC
T ss_pred chhhc
Confidence 76553
No 5
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.86 E-value=3.8e-22 Score=170.60 Aligned_cols=75 Identities=35% Similarity=0.476 Sum_probs=70.1
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCC-CCCCCCCCCCCCCCcccHHHHHHHHHHHHHhhh
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ-TDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQ 242 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~-~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~~~ 242 (246)
..++|++|+||||+++|+|||++|| ||||||++|.+|+..++ +||+||++++..+|+||..||+.|+.|+..++-
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~-Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~ 175 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPS-GITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGW 175 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTT-SCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTT
T ss_pred ccCCcHhhcccCccccCCCCeECCC-CCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999996 89999999999998764 699999999999999999999999999988764
No 6
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-20 Score=143.38 Aligned_cols=75 Identities=17% Similarity=0.259 Sum_probs=66.6
Q ss_pred CCCCccccccccccCCCceecCCCCceecHHHHHHHHhcC------CCCCCCCCC---CCCCCCcccHHHHHHHHHHHHH
Q psy1723 169 GAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD------QTDPFNRSP---LTMEQVIPNTQLQTQIQDWIRQ 239 (246)
Q Consensus 169 ~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~------~~dP~tr~p---Lt~~~lipn~~Lk~~Ie~w~~~ 239 (246)
..+++|+||||.++|+|||++|.|||+|||.+|.+|+..+ .+||+||.+ ++..+|+||..|++.|++|+.+
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 4689999999999999999997459999999999999864 399997766 9999999999999999999987
Q ss_pred hhhh
Q psy1723 240 CRQK 243 (246)
Q Consensus 240 ~~~~ 243 (246)
++.+
T Consensus 83 ~~r~ 86 (94)
T 2yu4_A 83 RHRH 86 (94)
T ss_dssp CCSC
T ss_pred hccc
Confidence 6643
No 7
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.78 E-value=1.7e-19 Score=157.88 Aligned_cols=75 Identities=35% Similarity=0.468 Sum_probs=69.7
Q ss_pred hhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCC-CCCCCCCCCCCCCCcccHHHHHHHHHHHHHhh
Q psy1723 166 LLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ-TDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCR 241 (246)
Q Consensus 166 ~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~-~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~~ 241 (246)
...++|++|+||||.++|+|||++|| ||||||+||.+|+..++ +||+||++++..+|+||..|++.|++|+.+++
T Consensus 201 ~~~~~~~~~~c~i~~~~~~dPv~~~~-gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~ 276 (281)
T 2c2l_A 201 KKRDIPDYLCGKISFELMREPCITPS-GITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG 276 (281)
T ss_dssp SCCCCCSTTBCTTTCSBCSSEEECSS-CCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred cCCCCCcccCCcCcCCHhcCCeECCC-CCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCC
Confidence 45789999999999999999999996 89999999999998765 59999999999999999999999999998765
No 8
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.75 E-value=3e-19 Score=127.43 Aligned_cols=56 Identities=25% Similarity=0.438 Sum_probs=51.3
Q ss_pred ccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHH
Q psy1723 173 EYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQ 228 (246)
Q Consensus 173 ef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~ 228 (246)
.|+||||+++|+|||+++.||++|||++|++||.++++||+||++|+.++|+||..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 58999999999999999445999999999999999899999999999999999853
No 9
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.73 E-value=2.3e-18 Score=125.74 Aligned_cols=73 Identities=26% Similarity=0.400 Sum_probs=68.6
Q ss_pred cCCCCccccccccccCCCceecCCCCceecHHHHHHHHhc-CCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHhh
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS-DQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCR 241 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~-~~~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~~ 241 (246)
.++|++|.|||+.++|.|||++|+ ||+|+|.+|.+|+.. ..+||.+|++++..+++||..|++.|++|+.+++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~C-gH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~ 76 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVST-GQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG 76 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETT-TEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred cCCcccCCCCCccccccCCEEcCC-CCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcC
Confidence 468999999999999999999996 899999999999987 5699999999999999999999999999998765
No 10
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.56 E-value=8e-15 Score=109.97 Aligned_cols=77 Identities=22% Similarity=0.285 Sum_probs=69.0
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcC--CCCCCCCCCC-CCCCCcccHHHHHHHHHHHHHhhhh
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD--QTDPFNRSPL-TMEQVIPNTQLQTQIQDWIRQCRQK 243 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~--~~dP~tr~pL-t~~~lipn~~Lk~~Ie~w~~~~~~~ 243 (246)
.++++++|.|||+.++|.|||++|++||+|++.+|.+|+... ..||.+|+++ ..+++.||..|++.|+.|...+...
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 467899999999999999999999559999999999999765 4899999997 6789999999999999999877644
No 11
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.44 E-value=3.8e-14 Score=127.56 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=66.9
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCC--CCCC--CCCCCCCCCCcccHHHHHHHHHHHHHhhh
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ--TDPF--NRSPLTMEQVIPNTQLQTQIQDWIRQCRQ 242 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~--~dP~--tr~pLt~~~lipn~~Lk~~Ie~w~~~~~~ 242 (246)
.+....+|.||||..+|+|||++..|||+|||++|.+|+..++ .||. |+++++..+|+||..|+..|+.|..+.+.
T Consensus 175 v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r~~~ 254 (267)
T 3htk_C 175 IEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKESQ 254 (267)
T ss_dssp CCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHHHHH
T ss_pred ecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999733599999999999998753 7999 88999999999999999999999876543
No 12
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.40 E-value=1e-13 Score=109.73 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=66.6
Q ss_pred hhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCC-CCCCCCCCCCC-CCCcccHHHHHHHHHHHHHhh
Q psy1723 166 LLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ-TDPFNRSPLTM-EQVIPNTQLQTQIQDWIRQCR 241 (246)
Q Consensus 166 ~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~-~dP~tr~pLt~-~~lipn~~Lk~~Ie~w~~~~~ 241 (246)
....+++++.|||+.++|.|||++|+ ||+|++.+|.+|+..+. .||.+|++++. .++.+|..|++.|+.|.....
T Consensus 45 ~~~~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~~ 121 (124)
T 3fl2_A 45 FLSKVEETFQCICCQELVFRPITTVC-QHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGYG 121 (124)
T ss_dssp HHHHHHHHTBCTTTSSBCSSEEECTT-SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTTT
T ss_pred HHHhCccCCCCCcCChHHcCcEEeeC-CCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccccc
Confidence 34566788999999999999999997 89999999999998665 89999999988 889999999999999975543
No 13
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.33 E-value=8.4e-13 Score=100.40 Aligned_cols=76 Identities=12% Similarity=0.026 Sum_probs=68.1
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHhhh
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCRQ 242 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~~~ 242 (246)
..++++++.|||+.+.|.|||+++.+||+|++.+|.+|+..+.+||.+|.+++..++.+|..|++.|+.|...+..
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~~ 91 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARNH 91 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHHH
Confidence 4456778999999999999999833499999999999999888999999999999999999999999999877654
No 14
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=107.57 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=65.8
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCC-CCCCCCCCCCCC-CCcccHHHHHHHHHHHHHh
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ-TDPFNRSPLTME-QVIPNTQLQTQIQDWIRQC 240 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~-~dP~tr~pLt~~-~lipn~~Lk~~Ie~w~~~~ 240 (246)
..++++++.|||+.++|.|||++|+ ||+|++.||.+|+.... .||.+|.+++.. .+.+|..|++.|+.|....
T Consensus 72 ~~~l~~~~~C~IC~~~~~~pv~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~~ 146 (150)
T 1z6u_A 72 LKKLEQSFMCVCCQELVYQPVTTEC-FHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGY 146 (150)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEECTT-SCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTTT
T ss_pred HHhCccCCEeecCChhhcCCEEcCC-CCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhHh
Confidence 4557788999999999999999997 89999999999998765 899999999987 8999999999999987543
No 15
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.21 E-value=8.2e-12 Score=96.44 Aligned_cols=70 Identities=11% Similarity=0.170 Sum_probs=63.8
Q ss_pred cCCCCccccccccccCCCceec-CCCCceecHHHHHHHHhcCCCCCCCCCCCCCC----CCcccHHHHHHHHHHHH
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTL-PSSRQTLDKSTIARHLLSDQTDPFNRSPLTME----QVIPNTQLQTQIQDWIR 238 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVil-p~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~----~lipn~~Lk~~Ie~w~~ 238 (246)
.++++++.|||+.++|.|||++ |+ ||+|++.+|.+|+..+..||.+|.++... .+.+|..|++.|+.|..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~C-gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFIDATTIIEC-LHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHHGGGTBCTTTSSBCSSEEEETTT-CCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred hccCCcCCCccCChHHhCcCEeCCC-CChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 4567899999999999999998 75 89999999999999888999999999876 78999999999999865
No 16
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.18 E-value=1.3e-11 Score=96.93 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=64.5
Q ss_pred hhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCC-CCCCCCCCCCCCCCcccHHHHHHHHHH
Q psy1723 166 LLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ-TDPFNRSPLTMEQVIPNTQLQTQIQDW 236 (246)
Q Consensus 166 ~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~-~dP~tr~pLt~~~lipn~~Lk~~Ie~w 236 (246)
....++++|.|||+.++|.+||++++ ||+|++.+|.+|+...+ +||.+|.+++..++.|+..+++.|.++
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPC-GHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTT-SCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred hccCCCCCCCCCcCChhhcCeEECCc-CChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 35678999999999999999999996 89999999999998776 999999999999999999999998865
No 17
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.14 E-value=7.2e-12 Score=91.26 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=58.4
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhc------CCCCCCCCCCCCCCCCcccHHHHHH
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS------DQTDPFNRSPLTMEQVIPNTQLQTQ 232 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~------~~~dP~tr~pLt~~~lipn~~Lk~~ 232 (246)
..++.+++.|||+.+.+.+||++|+ ||+|.+.+|.+|+.. ...||.+|++++.+++.+|..|++.
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADC-NHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTT-SCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHhCccCCCCcCCChhhCcceeCCC-CCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 4668889999999999999999996 899999999999988 4589999999999999999876543
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=4.9e-11 Score=87.41 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=58.5
Q ss_pred cCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQD 235 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie~ 235 (246)
.+..+.+.|||+.+.+.+||++|+ ||+|++.+|.+|+.....||++|+++. ..+.+|..|.+.++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~l~~~~~~ 75 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKC-RHYFCESCALEHFRATPRCYICDQPTG-GIFNPAKELMAKLQK 75 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTT-SCEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEECHHHHHHHSS
T ss_pred ccCCCCCCCcCCCchhcCeeEccC-CCHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcHHHHHHHHHh
Confidence 456778999999999999999997 899999999999998889999999997 678899887766653
No 19
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=8.3e-12 Score=96.09 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=63.1
Q ss_pred CCCccccccccccCCCceecCCCCceecHHHHHHHHhcCC---CCCCCCCCCCCCCCcccHHHHHHHHHHHHHhh
Q psy1723 170 APDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ---TDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCR 241 (246)
Q Consensus 170 iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~---~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~~ 241 (246)
+.+.+.|||+.+.+.+||++|+ ||+|++.+|.+|+...+ .||.+|.+++..++.+|..+.+.|+.++....
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~~~ 91 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKC-DHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKIIC 91 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTT-SCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCC-CCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHHHH
Confidence 4457889999999999999997 89999999999998754 89999999999999999999998888876543
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.12 E-value=4.9e-11 Score=86.41 Aligned_cols=61 Identities=23% Similarity=0.227 Sum_probs=52.8
Q ss_pred hhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcC--CCCCCCCCCC-CCCCCccc
Q psy1723 166 LLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD--QTDPFNRSPL-TMEQVIPN 226 (246)
Q Consensus 166 ~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~--~~dP~tr~pL-t~~~lipn 226 (246)
...++++++.|||+.++|.|||++|.+||+|.+.+|.+|+... ..||.+|+++ ..+.+++|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 3577899999999999999999999448999999999999876 5899999985 45666676
No 21
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.11 E-value=2.2e-12 Score=93.53 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=58.1
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhc-------CCCCCCCCCCCCCCCCcccHHHHHH
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS-------DQTDPFNRSPLTMEQVIPNTQLQTQ 232 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~-------~~~dP~tr~pLt~~~lipn~~Lk~~ 232 (246)
..++.+++.|||+.+.+.+||++|+ ||+|.+.+|.+|+.. ...||++|++++..++.+|..|++.
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~C-gH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDC-GHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSS-SCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCC-CCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 4568899999999999999999996 899999999999987 4589999999999999999877643
No 22
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=1.4e-11 Score=96.69 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=64.0
Q ss_pred cCCCCccccccccccCCCceec-CCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHhh
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTL-PSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWIRQCR 241 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVil-p~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~~~~ 241 (246)
.++.+++.|||+..+|.|||++ |+ ||+|++.+|.+|+. ..||.+|.++...++.+|..|++.|+.|...+.
T Consensus 17 ~~l~~~~~C~IC~~~~~~pv~~~~C-gH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 17 DRLEKLLRCSRCTNILREPVCLGGC-EHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp HHHHHTTSCSSSCSCCSSCBCCCSS-SCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhchhCCCCCCCChHhhCccEeCCC-CCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence 4456789999999999999999 75 89999999999987 789999999999999999999999999986553
No 23
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=9.1e-12 Score=90.72 Aligned_cols=65 Identities=17% Similarity=0.314 Sum_probs=58.6
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhc------CCCCCCCCCCCCCCCCcccHHHHHH
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS------DQTDPFNRSPLTMEQVIPNTQLQTQ 232 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~------~~~dP~tr~pLt~~~lipn~~Lk~~ 232 (246)
..++.+++.|||+.+.+.+||++|+ ||+|++.+|.+|+.. ...||++|++++..++.||..|++.
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDC-GHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSS-SCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHHccCCCCCCCCCcccCCceeCCC-CCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 4678889999999999999999996 899999999999987 5699999999999999999876543
No 24
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.5e-10 Score=83.10 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=54.8
Q ss_pred hcCCCCccccccccccCCCceec-CCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccH
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTL-PSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNT 227 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVil-p~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~ 227 (246)
..++.+++.|||+.+.+.|||++ ++ ||+|.+.+|.+|+.....||++|++++..++++|.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~C-gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITEC-LHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSS-CCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCC-CCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 56788899999999999999998 65 89999999999998888999999999999988764
No 25
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.08 E-value=6.4e-11 Score=97.83 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=61.5
Q ss_pred hcCCCCccccccccccCCCceec-CCCCceecHHHHHHHHhc-CCCCCCCCCCCC-CCCCcccHHHHHHHHHHHHH
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTL-PSSRQTLDKSTIARHLLS-DQTDPFNRSPLT-MEQVIPNTQLQTQIQDWIRQ 239 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVil-p~sG~tydRs~I~~~L~~-~~~dP~tr~pLt-~~~lipn~~Lk~~Ie~w~~~ 239 (246)
..++.+++.|||+.+.+.|||++ || ||+|++.||.+|+.. +..||.+|.+++ .+.+.||..|++.|+.|...
T Consensus 48 ~~~~~~~~~C~IC~~~~~~p~~~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 48 PRSLHSELMCPICLDMLKNTMTTKEC-LHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp --CCHHHHBCTTTSSBCSSEEEETTT-CCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hhhCCCCCCCcccChHhhCcCEeCCC-CChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 34567789999999999999998 65 999999999999997 568999999995 47799999999999998653
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.08 E-value=3.9e-11 Score=91.94 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=62.6
Q ss_pred hcCCCCccccccccccCCCcee-cCCCCceecHHHHHHHHhcC-CCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVT-LPSSRQTLDKSTIARHLLSD-QTDPFNRSPLTMEQVIPNTQLQTQIQDWIR 238 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVi-lp~sG~tydRs~I~~~L~~~-~~dP~tr~pLt~~~lipn~~Lk~~Ie~w~~ 238 (246)
...+.+++.|||+.+++.|||+ +++ ||+|++.+|.+|+... ..||.+|.+++.+++++|..+...++....
T Consensus 16 ~~~l~~~~~C~IC~~~~~~p~~~~~C-gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~ 88 (100)
T 3lrq_A 16 VESIAEVFRCFICMEKLRDARLCPHC-SKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDT 88 (100)
T ss_dssp HHHHHHHTBCTTTCSBCSSEEECTTT-CCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHH
T ss_pred cccCCCCCCCccCCccccCccccCCC-CChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHH
Confidence 4556788999999999999999 776 8999999999999988 599999999999999999888877766543
No 27
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.06 E-value=1.2e-10 Score=93.89 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=53.4
Q ss_pred CCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q psy1723 170 APDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNTQLQTQIQDWI 237 (246)
Q Consensus 170 iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~~Lk~~Ie~w~ 237 (246)
+.+++.|||+.+.|.|||++|+ ||+|++.+|.+|+....+||++|+++... .++..+...|+.++
T Consensus 50 ~~~~~~C~iC~~~~~~~~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVTLNC-AHSFCSYCINEWMKRKIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEEETT-SCEEEHHHHHHHTTTCSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred ccccCCCcccCcccCCceECCC-CCCccHHHHHHHHHcCCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 4567899999999999999997 89999999999999889999999998653 24555555555544
No 28
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.05 E-value=3.5e-11 Score=93.68 Aligned_cols=73 Identities=27% Similarity=0.286 Sum_probs=63.2
Q ss_pred cCCCCccccccccccCCCceecCCCCceecHHHHHHHHhc-CCCCCCCCCCCCC-------CCCcccHHHHHHHHHHHHH
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS-DQTDPFNRSPLTM-------EQVIPNTQLQTQIQDWIRQ 239 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~-~~~dP~tr~pLt~-------~~lipn~~Lk~~Ie~w~~~ 239 (246)
....++|.|||+.+++.+||++|+ ||+|++.+|.+|+.. ...||++|.+++. ..+..|..|...|++|...
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPC-NHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR 88 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTT-SCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred cCCCCCCCCccCCcccCceeEcCC-CCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence 345568999999999999999996 899999999999976 4589999999874 7788999999999999754
Q ss_pred hh
Q psy1723 240 CR 241 (246)
Q Consensus 240 ~~ 241 (246)
..
T Consensus 89 ~~ 90 (115)
T 3l11_A 89 EC 90 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 29
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.04 E-value=1.4e-10 Score=96.11 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=63.8
Q ss_pred hhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCC-CCCCCCCCCCCCCCcccHHHHHHHHHH
Q psy1723 166 LLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ-TDPFNRSPLTMEQVIPNTQLQTQIQDW 236 (246)
Q Consensus 166 ~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~-~dP~tr~pLt~~~lipn~~Lk~~Ie~w 236 (246)
....++++|.|||+.++|.|||++++ ||+|++++|.+|+...+ +||.+|.+++..++.|+..+++.|.+.
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPC-GHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTT-SCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred hccCCCCCCCCCCCChhhcCcEECCC-CCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 35679999999999999999999996 89999999999998764 999999999999999999999988753
No 30
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=3e-10 Score=80.08 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=50.1
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHh-cCCCCCCCCCCCCCCCC
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLL-SDQTDPFNRSPLTMEQV 223 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~-~~~~dP~tr~pLt~~~l 223 (246)
...+++++.|||+.+.+++||++++ ||+|.+.+|.+|+. ....||.+|++++.+++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTEC-GHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSS-SCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCC-CCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 4667889999999999999999997 89999999999995 44689999999988765
No 31
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.94 E-value=3.6e-10 Score=88.03 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCCCccccccccccCCCceecCCCCceecHHHHHHHHhc-CCCCCCCCCCCCCCCCc-ccHHHHHHHHH
Q psy1723 169 GAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS-DQTDPFNRSPLTMEQVI-PNTQLQTQIQD 235 (246)
Q Consensus 169 ~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~-~~~dP~tr~pLt~~~li-pn~~Lk~~Ie~ 235 (246)
++++++.|||+.++|.|||++|+ ||+|.+.+|.+|+.. +.+||.+|.+++..++. ++..+.+.|..
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSC-KHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTT-SCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred hccCCCCCCCCCcHhcCcEEcCC-CCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 34568999999999999999997 899999999999987 56999999999988876 56777776654
No 32
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=8.6e-10 Score=78.65 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=50.4
Q ss_pred hhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhc---CCCCCCCCCCCCCCCC
Q psy1723 166 LLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS---DQTDPFNRSPLTMEQV 223 (246)
Q Consensus 166 ~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~---~~~dP~tr~pLt~~~l 223 (246)
...++++++.|||+.+.+.+||++|+ ||+|.+.+|.+|+.. ...||++|++++.+++
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~~C-gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTIDC-GHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEECTT-CCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEcCC-CChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 35678899999999999999999986 899999999999973 3589999999988765
No 33
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.87 E-value=4.2e-10 Score=91.83 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=58.4
Q ss_pred cCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCC-CCCCCCCCCC---------CCCCcccHHHHHHHHH
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ-TDPFNRSPLT---------MEQVIPNTQLQTQIQD 235 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~-~dP~tr~pLt---------~~~lipn~~Lk~~Ie~ 235 (246)
..++++|.|||+..+|.|||.+++ ||+|++.+|.+|+...+ .||.+|.++. ..++.|+..+++.|.+
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~C-gH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQC-GHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTT-SCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred ccCCcCcCCCCCChhhcCcEECCC-CCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 578899999999999999999986 89999999999998765 8999998754 3457799999988864
No 34
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.81 E-value=2.7e-09 Score=75.48 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=51.9
Q ss_pred CCCCccccccccccCCCc-------eecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCccc
Q psy1723 169 GAPDEYLDPIMNTIMLEP-------VTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPN 226 (246)
Q Consensus 169 ~iPdef~cPIt~~lM~DP-------Vilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn 226 (246)
...+++.|||+.+.+.+| |++++ ||+|.+.+|.+|+....+||++|.+++..++.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTEC-GHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTT-SCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCC-CChHhHHHHHHHHHcCCCCCCCCCccChhheeec
Confidence 456789999999999999 88886 8999999999999999999999999999888875
No 35
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=9.9e-09 Score=75.33 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=51.9
Q ss_pred hhcCCCCccccccccccCCC----ceecCCCCceecHHHHHHHHhcC---CCCCCCCCCCCCC---CCcccH
Q psy1723 166 LLAGAPDEYLDPIMNTIMLE----PVTLPSSRQTLDKSTIARHLLSD---QTDPFNRSPLTME---QVIPNT 227 (246)
Q Consensus 166 ~~~~iPdef~cPIt~~lM~D----PVilp~sG~tydRs~I~~~L~~~---~~dP~tr~pLt~~---~lipn~ 227 (246)
...++.+++.|||+.+.+.+ ||++|+ ||+|.+.+|.+|+... ..||++|++++.. .|.+|.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C-gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~ 78 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHC-GHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNL 78 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSS-SCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECT
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCC-CChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHH
Confidence 34678889999999999999 999996 8999999999999876 6899999998764 344444
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=7.7e-09 Score=72.55 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=48.2
Q ss_pred Cccccccccc-cCCCc----eecCCCCceecHHHHHHHHhcC-CCCCCCCCCCCCCCCccc
Q psy1723 172 DEYLDPIMNT-IMLEP----VTLPSSRQTLDKSTIARHLLSD-QTDPFNRSPLTMEQVIPN 226 (246)
Q Consensus 172 def~cPIt~~-lM~DP----Vilp~sG~tydRs~I~~~L~~~-~~dP~tr~pLt~~~lipn 226 (246)
+++.|||+.+ .+.+| |++++ ||+|.+.+|.+|+.++ ..||.+|.+++..++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~C-gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVC-GHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTT-CCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCC-CCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 6789999999 99999 57786 8999999999998765 589999999999998876
No 37
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.75 E-value=3.7e-09 Score=73.09 Aligned_cols=54 Identities=17% Similarity=0.090 Sum_probs=49.5
Q ss_pred CccccccccccCCCc-------eecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCccc
Q psy1723 172 DEYLDPIMNTIMLEP-------VTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPN 226 (246)
Q Consensus 172 def~cPIt~~lM~DP-------Vilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn 226 (246)
+++.|||+.+.+.+| |++++ ||+|.+.+|.+|+.++.+||++|++++..++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTEC-GHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETT-SCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCC-CCchhHHHHHHHHHcCCCCCCCCccCCccceeee
Confidence 578999999999998 88886 8999999999999998899999999999888764
No 38
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=2.3e-09 Score=76.62 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=48.8
Q ss_pred cCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCC
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQV 223 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~l 223 (246)
....+++.|||+.+.+.+||++|+ ||+|.+.+|.+|+..+.+||++|++++..++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~C-gH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPC-KHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETT-TEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred ccCCCCCCCccCCcccCCCEEccC-CCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 345678999999999999999996 8999999999999988899999999876544
No 39
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=3.2e-08 Score=68.83 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=41.8
Q ss_pred hhcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhc---CCCCCCC
Q psy1723 166 LLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS---DQTDPFN 214 (246)
Q Consensus 166 ~~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~---~~~dP~t 214 (246)
....+.+++.|||+.+.+.|||++|+ ||+|.+.+|.+|+.. ...||++
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTIDC-GHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEECTT-SSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEeCC-CCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35678899999999999999999986 899999999999984 3478864
No 40
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=2.5e-08 Score=69.79 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=47.7
Q ss_pred hcCCCCccccccccccCCCc-------eecCCCCceecHHHHHHHHhcCCCCCCCCCCCCC
Q psy1723 167 LAGAPDEYLDPIMNTIMLEP-------VTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTM 220 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DP-------Vilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~ 220 (246)
....++.+.|||+.+.+.+| |++++ ||+|.+.+|.+|+..+.+||++|++++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTEC-GHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSS-SCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCC-CChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34577899999999999999 88997 8999999999999998899999998864
No 41
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.61 E-value=3.3e-08 Score=71.44 Aligned_cols=59 Identities=19% Similarity=0.167 Sum_probs=51.4
Q ss_pred cCCCCccccccccccCCCc---eecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCcccH
Q psy1723 168 AGAPDEYLDPIMNTIMLEP---VTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPNT 227 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DP---Vilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn~ 227 (246)
....+++.|||+.+.+.+| +++|+ ||+|.+.+|.+|+..+.+||++|.+++..++.+++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C-~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPC-NHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTT-SCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCC-CCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCC
Confidence 4456789999999999877 45686 89999999999999888999999999998888764
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.53 E-value=3.8e-08 Score=76.70 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=50.2
Q ss_pred CCCccccccccccCCCc-------eecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCccc
Q psy1723 170 APDEYLDPIMNTIMLEP-------VTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPN 226 (246)
Q Consensus 170 iPdef~cPIt~~lM~DP-------Vilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn 226 (246)
.++++.|||+.+.+.+| |++++ ||+|.+.+|.+|+....+||++|++++..++.++
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTEC-GHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETT-CCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCCcccChhhhCccccccCeEecCC-CChhhHHHHHHHHHhCCCCCCCCCcCcccccccc
Confidence 36789999999999999 99997 8999999999999988999999999998777553
No 43
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.2e-07 Score=64.24 Aligned_cols=47 Identities=21% Similarity=0.185 Sum_probs=40.5
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhc---CCCCCCC
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLS---DQTDPFN 214 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~---~~~dP~t 214 (246)
..++.+++.|||+.+.+.+||++|+ ||+|.+.+|.+|+.+ ...||++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~C-gH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIEC-GHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSS-CCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCC-CCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567889999999999999999996 899999999999653 3578863
No 44
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.42 E-value=2.3e-07 Score=65.14 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=43.0
Q ss_pred CccccccccccCCCc-eecCCCCceecHHHHHHHHhcCCCCCCCCCCCCC
Q psy1723 172 DEYLDPIMNTIMLEP-VTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTM 220 (246)
Q Consensus 172 def~cPIt~~lM~DP-Vilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~ 220 (246)
++..|||+.+.+.+| +++|+ ||+|.+.+|.+|+..+.+||++|.+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C-~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPC-LHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTT-TEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCC-CCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 467899999999998 67775 8999999999999988999999999864
No 45
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.39 E-value=3.5e-07 Score=64.47 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=45.8
Q ss_pred hcCCCCccccccccccC---CCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCC
Q psy1723 167 LAGAPDEYLDPIMNTIM---LEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTME 221 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM---~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~ 221 (246)
..+..++..|||+.+.+ .+|+++|+ ||+|.+.+|.+|+..+.+||++|.+++..
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C-~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLPC-MHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECTT-SCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeCC-CCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 34556778999999887 45678996 89999999999999999999999988764
No 46
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.39 E-value=2.3e-07 Score=62.51 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=44.5
Q ss_pred CCCccccccccccCCC---ceecCCCCceecHHHHHHHHhcCCCCCCCCCCCC
Q psy1723 170 APDEYLDPIMNTIMLE---PVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLT 219 (246)
Q Consensus 170 iPdef~cPIt~~lM~D---PVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt 219 (246)
+.++..|||+.+.+.+ |+++|.+||+|.+.+|.+|+.++.+||++|.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3467789999999998 8999855999999999999999899999999875
No 47
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=8.8e-08 Score=67.78 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=49.0
Q ss_pred hcCCCCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCC
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQV 223 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~l 223 (246)
..+..+.+.|||+.+.+.+ |++|+ ||+|.+.+|.+|+....+||++|.+++..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPC-AHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETT-TEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCC-CCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 4567889999999999999 99997 8999999999999988899999999876553
No 48
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.32 E-value=4.6e-07 Score=60.88 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=42.3
Q ss_pred CccccccccccCCC----ceecCCCCceecHHHHHHHHhcCCCCCCCCCCCC
Q psy1723 172 DEYLDPIMNTIMLE----PVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLT 219 (246)
Q Consensus 172 def~cPIt~~lM~D----PVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt 219 (246)
+++.|||+.+.+.+ |+++|+ ||+|.+.+|.+|+....+||++|.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPC-GHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTT-SCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCC-CCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 56789999999977 788886 899999999999999999999999875
No 49
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=8.1e-07 Score=63.38 Aligned_cols=53 Identities=11% Similarity=0.131 Sum_probs=46.5
Q ss_pred hcCCCCccccccccccCCCceec---CCCCceecHHHHHHHHhcCCCCCCCCCCCCC
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTL---PSSRQTLDKSTIARHLLSDQTDPFNRSPLTM 220 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVil---p~sG~tydRs~I~~~L~~~~~dP~tr~pLt~ 220 (246)
..+..++..|||+.+.+.+|+.+ |+ ||+|.+.+|.+|+..+.+||++|.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C-~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPC-KHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETT-TEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCC-CCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 45677889999999999988655 86 8999999999999998999999998865
No 50
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.29 E-value=6.4e-07 Score=67.12 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=46.1
Q ss_pred cCCCCccccccccccCCC---ceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCC
Q psy1723 168 AGAPDEYLDPIMNTIMLE---PVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTM 220 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~D---PVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~ 220 (246)
....++..|||+.+.+.+ ++++|+ ||+|.+.+|.+|+..+++||++|.++..
T Consensus 35 ~~~~~~~~C~IC~~~~~~~~~~~~l~C-~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 35 GAVGQEMCCPICCSEYVKGDVATELPC-HHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSSCSEETTTTEECCTTCEEEEETT-TEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cccCCCCCCcccChhhcCCCcEEecCC-CChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 345678899999999988 889996 8999999999999988999999998764
No 51
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=9.6e-07 Score=63.36 Aligned_cols=51 Identities=14% Similarity=0.168 Sum_probs=45.3
Q ss_pred CCCccccccccccCCCc---eecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCC
Q psy1723 170 APDEYLDPIMNTIMLEP---VTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTME 221 (246)
Q Consensus 170 iPdef~cPIt~~lM~DP---Vilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~ 221 (246)
..++..|||+.+.+.+| +++|+ ||+|.+.+|.+|+..+.+||++|.+++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C-~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPC-NHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETT-TEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECC-CCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 34677899999999998 78996 89999999999999999999999988753
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.18 E-value=9.3e-07 Score=83.36 Aligned_cols=53 Identities=17% Similarity=0.069 Sum_probs=46.5
Q ss_pred CCccccccccccCCCceecCCCCceecHHHHHHHHh-cCCCCCCCCCCCCCCCCc
Q psy1723 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLL-SDQTDPFNRSPLTMEQVI 224 (246)
Q Consensus 171 Pdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~-~~~~dP~tr~pLt~~~li 224 (246)
.+...||||.+.+.+||++|| ||+|++.||.+|+. ...+||+||.+++...++
T Consensus 330 ~~~~~C~ICle~~~~pv~lpC-GH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPC-GHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETT-CCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCCCccCcCCCCeEEeCC-CChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 345799999999999999997 89999999999998 567999999998875544
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.14 E-value=7.9e-07 Score=69.13 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=50.9
Q ss_pred CCCccccccccccCCCc-------eecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCCCccc
Q psy1723 170 APDEYLDPIMNTIMLEP-------VTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIPN 226 (246)
Q Consensus 170 iPdef~cPIt~~lM~DP-------Vilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~lipn 226 (246)
-++.+.|||+.+.+.+| |.+++ ||+|...+|.+|+....+||.+|.+++.+++.|+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~C-gH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTEC-GHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETT-SBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCC-CChhhHHHHHHHHHcCCCCCCCCCcCChhcceee
Confidence 35678899999999998 88886 8999999999999999999999999999888775
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.11 E-value=6.5e-07 Score=61.44 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=41.2
Q ss_pred CCccccccccccCCCceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCC
Q psy1723 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTME 221 (246)
Q Consensus 171 Pdef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~ 221 (246)
.+++.|||..+.+.+||++|+ ||+|.+.+|.+ ....||++|++++..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~C-gH~fC~~Ci~~---~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPC-LHTLCSGCLEA---SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTT-SCCSBTTTCSS---SSSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCC-CCcccHHHHcc---CCCCCCcCCcEeecC
Confidence 467899999999999999996 89999999988 356899999988754
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.10 E-value=4.7e-07 Score=65.55 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=42.3
Q ss_pred cCCCCccccccccccCCCceecCCCCce-ecHHHHHHHHhcCCCCCCCCCCCCC
Q psy1723 168 AGAPDEYLDPIMNTIMLEPVTLPSSRQT-LDKSTIARHLLSDQTDPFNRSPLTM 220 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM~DPVilp~sG~t-ydRs~I~~~L~~~~~dP~tr~pLt~ 220 (246)
.++.+++.|||+.+.+.|||.+|+ ||+ |.+.++.+| ..||++|++++.
T Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~pC-gH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 19 RRLQEEKLCKICMDRNIAIVFVPC-GHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHTBCTTTSSSBCCEEEETT-CCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred hcCccCCCCCCCCCCCCCEEEcCC-CChhHHHHhhhcC----ccCCCcCcCccC
Confidence 344567899999999999999997 899 999999998 789999998764
No 56
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.08 E-value=3.1e-06 Score=62.41 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=45.8
Q ss_pred cCCCCccccccccccC--CCceecC--CCCceecHHHHHHHHhcC-CCCCCCCCCCCCCCC
Q psy1723 168 AGAPDEYLDPIMNTIM--LEPVTLP--SSRQTLDKSTIARHLLSD-QTDPFNRSPLTMEQV 223 (246)
Q Consensus 168 ~~iPdef~cPIt~~lM--~DPVilp--~sG~tydRs~I~~~L~~~-~~dP~tr~pLt~~~l 223 (246)
.+..+++.|||+.+.+ .||+++| + ||+|.+.+|.+++... ..||.+|++++...+
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~C-GH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTC-GYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTT-SCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCC-CCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 4567889999999998 5778877 6 8999999999987543 589999999887655
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=2.3e-06 Score=62.92 Aligned_cols=51 Identities=6% Similarity=0.130 Sum_probs=43.3
Q ss_pred CccccccccccCCC--------------ceecCCCCceecHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy1723 172 DEYLDPIMNTIMLE--------------PVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQ 222 (246)
Q Consensus 172 def~cPIt~~lM~D--------------PVilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~~~ 222 (246)
++-.|+|+.+-+.+ ++++|.+||+|-+.+|.+||..+++||++|+++...+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 45569999999987 6677756999999999999999999999999987543
No 58
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.03 E-value=4.4e-06 Score=64.29 Aligned_cols=50 Identities=6% Similarity=-0.127 Sum_probs=41.6
Q ss_pred CCCccccccccccCCCce------------------ecCCCCceecHHHHHHHHh-----cCCCCCCCCCCCCC
Q psy1723 170 APDEYLDPIMNTIMLEPV------------------TLPSSRQTLDKSTIARHLL-----SDQTDPFNRSPLTM 220 (246)
Q Consensus 170 iPdef~cPIt~~lM~DPV------------------ilp~sG~tydRs~I~~~L~-----~~~~dP~tr~pLt~ 220 (246)
.+.+..|||+.+.+.+|+ ++|+ ||+|.+.+|.+|+. ...+||.+|.++..
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKC-SHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSS-CCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCC-CCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 344569999999999887 6786 89999999999995 34699999998754
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=2.1e-06 Score=62.00 Aligned_cols=47 Identities=17% Similarity=0.089 Sum_probs=40.3
Q ss_pred CCCCccccccccccCCCceecCCCCce-ecHHHHHHHHhcCCCCCCCCCCCCC
Q psy1723 169 GAPDEYLDPIMNTIMLEPVTLPSSRQT-LDKSTIARHLLSDQTDPFNRSPLTM 220 (246)
Q Consensus 169 ~iPdef~cPIt~~lM~DPVilp~sG~t-ydRs~I~~~L~~~~~dP~tr~pLt~ 220 (246)
++.+++.|||+.+.+.|||++|+ ||+ |.+.++.+ ...||++|++++.
T Consensus 21 ~~~~~~~C~IC~~~~~~~~~~pC-gH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 21 RLQEEKLCKICMDRNIAIVFVPC-GHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHSCSSSCSSCCCBCCSSS-CCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred cCCCCCCCCcCCCCCCCEEEecC-CCHHHHHHHhhC----CCCCccCCceecC
Confidence 34556789999999999999997 899 99999964 3789999998865
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.74 E-value=2.7e-05 Score=54.86 Aligned_cols=48 Identities=8% Similarity=-0.049 Sum_probs=43.0
Q ss_pred CCccccccccccCCCceec--CCCCce-ecHHHHHHHHhcCCCCCCCCCCCC
Q psy1723 171 PDEYLDPIMNTIMLEPVTL--PSSRQT-LDKSTIARHLLSDQTDPFNRSPLT 219 (246)
Q Consensus 171 Pdef~cPIt~~lM~DPVil--p~sG~t-ydRs~I~~~L~~~~~dP~tr~pLt 219 (246)
+++..|+|+.+-.+|+|++ |+ ||. +...++.+|...+..||++|++++
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pC-gH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKT-GHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTE-EEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCC-CChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3566899999999999988 97 899 899999999988889999999875
No 61
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.62 E-value=7.1e-06 Score=76.08 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=43.3
Q ss_pred hcCCCCccccccccccCCCceecCCCCce-ecHHHHHHHHhcCCCCCCCCCCCCC
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQT-LDKSTIARHLLSDQTDPFNRSPLTM 220 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~t-ydRs~I~~~L~~~~~dP~tr~pLt~ 220 (246)
...+.+++.|||+.+.+.+||.+|| ||+ |++.|+.+| ..||++|.+++.
T Consensus 289 ~~~l~~~~~C~IC~~~~~~~v~lpC-gH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 289 LRRLQEERTCKVCMDKEVSVVFIPC-GHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHTTCBCTTTSSSBCCEEEETT-CCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred HHhCcCCCCCCccCCcCCceEEcCC-CChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4455678999999999999999997 899 999999988 789999998864
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.62 E-value=4.2e-05 Score=53.68 Aligned_cols=47 Identities=4% Similarity=-0.122 Sum_probs=42.3
Q ss_pred CccccccccccCCCceec--CCCCce-ecHHHHHHHHhcCCCCCCCCCCCC
Q psy1723 172 DEYLDPIMNTIMLEPVTL--PSSRQT-LDKSTIARHLLSDQTDPFNRSPLT 219 (246)
Q Consensus 172 def~cPIt~~lM~DPVil--p~sG~t-ydRs~I~~~L~~~~~dP~tr~pLt 219 (246)
....|+|+.+-.+|||++ |+ ||. +.+.++.+|...++.||++|++++
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pC-gH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRT-GHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTE-EEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCC-CCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 356799999999999998 97 898 999999999988889999999875
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.55 E-value=1.4e-05 Score=58.77 Aligned_cols=46 Identities=20% Similarity=0.134 Sum_probs=40.1
Q ss_pred CCCccccccccccCCCceecCCCCce-ecHHHHHHHHhcCCCCCCCCCCCCC
Q psy1723 170 APDEYLDPIMNTIMLEPVTLPSSRQT-LDKSTIARHLLSDQTDPFNRSPLTM 220 (246)
Q Consensus 170 iPdef~cPIt~~lM~DPVilp~sG~t-ydRs~I~~~L~~~~~dP~tr~pLt~ 220 (246)
+.++..|+|+.+...|||.+|+ ||. |.+.++.+| ..||++|++++.
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pC-gH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPC-GHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETT-CBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCCCEeEEeCcccCcEEEECC-CCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 4456789999999999999997 899 999999876 389999998865
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.40 E-value=0.00014 Score=56.53 Aligned_cols=47 Identities=15% Similarity=0.108 Sum_probs=39.8
Q ss_pred ccccccccccCCCc-----------------e-ecCCCCceecHHHHHHHHhcCCCCCCCCCCCCC
Q psy1723 173 EYLDPIMNTIMLEP-----------------V-TLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTM 220 (246)
Q Consensus 173 ef~cPIt~~lM~DP-----------------V-ilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~ 220 (246)
+-.|+|+.+-|.+| | ++|+ ||.|-+.+|.+||..+.+||++|++...
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C-~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC-NHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETT-SCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeeccc-CcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 45699999998877 4 4565 8999999999999999999999998653
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.37 E-value=6.1e-05 Score=56.32 Aligned_cols=66 Identities=5% Similarity=-0.136 Sum_probs=47.3
Q ss_pred CCccccccccccCCCceec---CCCCceecHHHHHHHHhcC-------C-CCCC--CCCC--CCCCCCcccHHHHHHHHH
Q psy1723 171 PDEYLDPIMNTIMLEPVTL---PSSRQTLDKSTIARHLLSD-------Q-TDPF--NRSP--LTMEQVIPNTQLQTQIQD 235 (246)
Q Consensus 171 Pdef~cPIt~~lM~DPVil---p~sG~tydRs~I~~~L~~~-------~-~dP~--tr~p--Lt~~~lipn~~Lk~~Ie~ 235 (246)
.+.|.|||+.+.+.+|+++ ++ ||+|++.+|.+|+... + .||. ++.+ ++.+++. +.-..+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~C-gH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~-~ll~~~~~~k 80 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQC-QCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE-CMVAAEIMQR 80 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTT-TEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH-HHSCHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCC-CCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH-HHCCHHHHHH
Confidence 4678999999999999875 55 8999999999998642 2 7999 8887 6654332 2222344555
Q ss_pred HHH
Q psy1723 236 WIR 238 (246)
Q Consensus 236 w~~ 238 (246)
|..
T Consensus 81 y~~ 83 (94)
T 1wim_A 81 YKK 83 (94)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.02 E-value=9.8e-05 Score=58.66 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=0.0
Q ss_pred ccccccccCCCc-----------------eecCCCCceecHHHHHHHHhcCCCCCCCCCCCCC
Q psy1723 175 LDPIMNTIMLEP-----------------VTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTM 220 (246)
Q Consensus 175 ~cPIt~~lM~DP-----------------Vilp~sG~tydRs~I~~~L~~~~~dP~tr~pLt~ 220 (246)
.|+|+.+-+.+| |+++.+||.|.+.+|.+||..+.+||++|++...
T Consensus 50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred cCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 699999988874 4433358999999999999999999999998654
No 67
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=97.02 E-value=0.00058 Score=53.00 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=49.4
Q ss_pred hcCCCCccccccccccCCCceecCCCCc-----eecHHHHHHHHhcCCCCCCCCCCCCCCCCcc
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQ-----TLDKSTIARHLLSDQTDPFNRSPLTMEQVIP 225 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~-----tydRs~I~~~L~~~~~dP~tr~pLt~~~lip 225 (246)
+.-.++.+.||||..+-+.=|-...|+. -||..++.+.+..+...|++|+|++..|++.
T Consensus 21 f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~HPLSREpit~sMIv~ 84 (102)
T 2kkx_A 21 LQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLPHPLTREPITASIIVK 84 (102)
T ss_dssp TTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCCCTTTCCCCCTTTEEC
T ss_pred ccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCCCCCccCCCCHhhEec
Confidence 4445566799999999999997655433 3999999999999999999999999998874
No 68
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.00076 Score=49.79 Aligned_cols=51 Identities=12% Similarity=0.151 Sum_probs=42.0
Q ss_pred CCccccccccccC--CCceecCCC----CceecHHHHHHHHhcCC--CCCCCCCCCCCC
Q psy1723 171 PDEYLDPIMNTIM--LEPVTLPSS----RQTLDKSTIARHLLSDQ--TDPFNRSPLTME 221 (246)
Q Consensus 171 Pdef~cPIt~~lM--~DPVilp~s----G~tydRs~I~~~L~~~~--~dP~tr~pLt~~ 221 (246)
.++-.|+|+.+-+ .+|+++|+. +|.|-+.+|.+||...+ +||++|.++..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 4456899998665 579999973 49999999999998764 899999998764
No 69
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.00065 Score=48.38 Aligned_cols=46 Identities=20% Similarity=0.106 Sum_probs=40.0
Q ss_pred CCCccccccccccCCCceecCCCCce-ecHHHHHHHHhcCCCCCCCCCCCCC
Q psy1723 170 APDEYLDPIMNTIMLEPVTLPSSRQT-LDKSTIARHLLSDQTDPFNRSPLTM 220 (246)
Q Consensus 170 iPdef~cPIt~~lM~DPVilp~sG~t-ydRs~I~~~L~~~~~dP~tr~pLt~ 220 (246)
-.+...|+|+.+-..|||++|+ ||. +...++.+ ...||++|+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pC-gH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPC-RHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTT-TBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECC-CChhhhHHHHhc----CCCCCCCCcchhc
Confidence 4457889999999999999997 899 99999984 4789999998864
No 70
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0012 Score=61.78 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=56.3
Q ss_pred CCccccccccccCCCceecCCCCce--ecHHHHHHHHhcCC--CCCCCCCCCCCCCCcccHHHHHHHH
Q psy1723 171 PDEYLDPIMNTIMLEPVTLPSSRQT--LDKSTIARHLLSDQ--TDPFNRSPLTMEQVIPNTQLQTQIQ 234 (246)
Q Consensus 171 Pdef~cPIt~~lM~DPVilp~sG~t--ydRs~I~~~L~~~~--~dP~tr~pLt~~~lipn~~Lk~~Ie 234 (246)
-=.+.||||+..|+.||....|.|. ||..++.+.....+ .||+|+++++.++|+.+.-+...++
T Consensus 247 ~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 247 IMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp EEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred EEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 3468999999999999998888887 99999999876665 8999999999999999998877664
No 71
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=96.39 E-value=0.0038 Score=58.27 Aligned_cols=65 Identities=9% Similarity=0.068 Sum_probs=56.9
Q ss_pred CCCccccccccccCCCceecCCCCce--ecHHHHHHHHhcCC--CCCCCCCCCCCCCCcccHHHHHHHH
Q psy1723 170 APDEYLDPIMNTIMLEPVTLPSSRQT--LDKSTIARHLLSDQ--TDPFNRSPLTMEQVIPNTQLQTQIQ 234 (246)
Q Consensus 170 iPdef~cPIt~~lM~DPVilp~sG~t--ydRs~I~~~L~~~~--~dP~tr~pLt~~~lipn~~Lk~~Ie 234 (246)
+.=.+.||||...|+.||....|.|. ||-.++.+.....+ .||+|+++++.++|+-+.-+...+.
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 34468999999999999998888887 99999999887665 8999999999999999988887764
No 72
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.60 E-value=0.018 Score=41.96 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=40.2
Q ss_pred cccccccccCCCceecCCCCceecHHHHHHHHhcC--CCCCCCCCCCCC
Q psy1723 174 YLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSD--QTDPFNRSPLTM 220 (246)
Q Consensus 174 f~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~--~~dP~tr~pLt~ 220 (246)
-.|+|+..++..=+.-+.+||.|-..+|.+||.+. .+||.+|.+...
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 36999998887666666789999999999999987 799999998764
No 73
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.73 E-value=0.005 Score=57.59 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=38.8
Q ss_pred cccccccccCCC----cee---cCCCCceecHHHHHHHHhcC-----------CCCCCCCCCCCC
Q psy1723 174 YLDPIMNTIMLE----PVT---LPSSRQTLDKSTIARHLLSD-----------QTDPFNRSPLTM 220 (246)
Q Consensus 174 f~cPIt~~lM~D----PVi---lp~sG~tydRs~I~~~L~~~-----------~~dP~tr~pLt~ 220 (246)
--|+||...+.+ |-. .+.|||.|-..||.+||.+. +.||+||+|++.
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 459999999887 643 45679999999999999863 579999999864
No 74
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=90.84 E-value=0.31 Score=33.61 Aligned_cols=49 Identities=10% Similarity=-0.019 Sum_probs=37.7
Q ss_pred CccccccccccCCCceecCCC--C--ceecHHHHHHHHhc--CCCCCCCCCCCCC
Q psy1723 172 DEYLDPIMNTIMLEPVTLPSS--R--QTLDKSTIARHLLS--DQTDPFNRSPLTM 220 (246)
Q Consensus 172 def~cPIt~~lM~DPVilp~s--G--~tydRs~I~~~L~~--~~~dP~tr~pLt~ 220 (246)
+.-.|.|+..-..+|.++|+. | +.|-+++|.+|+.. +.+||+++.++..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 344688887777888999952 2 37999999999975 3589999987653
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=81.12 E-value=1.8 Score=37.63 Aligned_cols=49 Identities=10% Similarity=0.130 Sum_probs=41.6
Q ss_pred ccccccccccCCCceecCCCCceecHHHHHHHHhcCC--CCCCCCCCCCCC
Q psy1723 173 EYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQ--TDPFNRSPLTME 221 (246)
Q Consensus 173 ef~cPIt~~lM~DPVilp~sG~tydRs~I~~~L~~~~--~dP~tr~pLt~~ 221 (246)
--.|.|+.++..-=+..+.||+.|-+.|+.+|+.+.+ .||.++.+.+.+
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 3469999998887788887899999999999998764 999999987654
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=77.24 E-value=1.3 Score=32.51 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=28.0
Q ss_pred Cccccccccc-cCCCcee--cCCCCceecHHHHHH-HH
Q psy1723 172 DEYLDPIMNT-IMLEPVT--LPSSRQTLDKSTIAR-HL 205 (246)
Q Consensus 172 def~cPIt~~-lM~DPVi--lp~sG~tydRs~I~~-~L 205 (246)
++..|+|+.+ ...+||. +.+ |++|.+.++.+ |-
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C-~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTC-EVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTT-TEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcC-ChHHhHHHCHHHhc
Confidence 4678999996 4889998 786 89999999998 54
No 77
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=73.54 E-value=3.7 Score=31.65 Aligned_cols=44 Identities=11% Similarity=0.035 Sum_probs=34.0
Q ss_pred ccccccccCCCce-ecCCCCceecHHHHHHHHhc-CCCCCCCCCCCC
Q psy1723 175 LDPIMNTIMLEPV-TLPSSRQTLDKSTIARHLLS-DQTDPFNRSPLT 219 (246)
Q Consensus 175 ~cPIt~~lM~DPV-ilp~sG~tydRs~I~~~L~~-~~~dP~tr~pLt 219 (246)
.||++.-....=. ++|+ +|+|+-.++..|..+ +++||.++.++.
T Consensus 3 fC~~C~~Pi~iygRmIPC-kHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPC-KHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETT-CCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccc-cccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 3566655555444 7897 899999999999865 579999999875
No 78
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=62.39 E-value=2.6 Score=27.94 Aligned_cols=15 Identities=20% Similarity=0.536 Sum_probs=12.9
Q ss_pred hcCCCCccccccccc
Q psy1723 167 LAGAPDEYLDPIMNT 181 (246)
Q Consensus 167 ~~~iPdef~cPIt~~ 181 (246)
+.++|++|.||+++.
T Consensus 24 f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 24 FDQLPDDWCCPVCGV 38 (46)
T ss_dssp GGGSCTTCBCTTTCC
T ss_pred hhhCCCCCcCcCCCC
Confidence 558999999999874
No 79
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=58.68 E-value=3.2 Score=28.37 Aligned_cols=15 Identities=20% Similarity=0.634 Sum_probs=13.2
Q ss_pred hcCCCCccccccccc
Q psy1723 167 LAGAPDEYLDPIMNT 181 (246)
Q Consensus 167 ~~~iPdef~cPIt~~ 181 (246)
+.++|++|.||+++.
T Consensus 30 fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 30 FKDIPDDWVCPLCGV 44 (54)
T ss_dssp GGGSCTTCBCTTTCC
T ss_pred hhHCCCCCcCcCCCC
Confidence 578999999999874
No 80
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=57.35 E-value=3.8 Score=27.68 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=13.2
Q ss_pred hcCCCCccccccccc
Q psy1723 167 LAGAPDEYLDPIMNT 181 (246)
Q Consensus 167 ~~~iPdef~cPIt~~ 181 (246)
+.++|++|.||+++.
T Consensus 30 f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 30 FEDLPDDWACPVCGA 44 (52)
T ss_dssp TTSSCTTCCCSSSCC
T ss_pred hHHCCCCCcCCCCCC
Confidence 678999999999875
No 81
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=53.96 E-value=4.5 Score=29.94 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=13.9
Q ss_pred hcCCCCcccccccccc
Q psy1723 167 LAGAPDEYLDPIMNTI 182 (246)
Q Consensus 167 ~~~iPdef~cPIt~~l 182 (246)
+.++|++|.||+++.-
T Consensus 54 fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 54 WDDIPDDWSCPDCGAA 69 (81)
T ss_dssp TTTSCTTCCCTTTCCC
T ss_pred hhHCCCCCcCCCCCCC
Confidence 5789999999999864
No 82
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=53.27 E-value=4.5 Score=27.29 Aligned_cols=15 Identities=20% Similarity=0.647 Sum_probs=13.2
Q ss_pred hcCCCCccccccccc
Q psy1723 167 LAGAPDEYLDPIMNT 181 (246)
Q Consensus 167 ~~~iPdef~cPIt~~ 181 (246)
+.++|++|.||+++.
T Consensus 29 f~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 29 FEDLPDDWVCPLCGA 43 (52)
T ss_dssp GGGSCTTCBCTTTCC
T ss_pred HhHCCCCCcCCCCCC
Confidence 568999999999875
No 83
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=52.66 E-value=4.5 Score=27.60 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=13.2
Q ss_pred hcCCCCccccccccc
Q psy1723 167 LAGAPDEYLDPIMNT 181 (246)
Q Consensus 167 ~~~iPdef~cPIt~~ 181 (246)
+.++|++|.||+++.
T Consensus 30 f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 30 WEDIPADWVCPDCGV 44 (55)
T ss_dssp GGGSCTTCCCTTTCC
T ss_pred hhHCCCCCcCCCCCC
Confidence 578999999999875
No 84
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=51.98 E-value=4.7 Score=28.86 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=13.8
Q ss_pred hcCCCCcccccccccc
Q psy1723 167 LAGAPDEYLDPIMNTI 182 (246)
Q Consensus 167 ~~~iPdef~cPIt~~l 182 (246)
+.++|++|.||+++.-
T Consensus 34 f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 34 FVDLSDSFMCPACRSP 49 (70)
T ss_dssp GGGSCTTCBCTTTCCB
T ss_pred hhhCCCCCcCCCCCCC
Confidence 5789999999999864
No 85
>2fd4_A Avirulence protein AVRPTOB; ring finger, U-BOX, ubiquitin ligase,; 1.80A {Pseudomonas syringae}
Probab=50.32 E-value=15 Score=28.59 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=38.7
Q ss_pred hcCCCCccccccccccCCCceecCCCCc-------------------------eecHHHHHHHHhcCCCCCCCCCCCCCC
Q psy1723 167 LAGAPDEYLDPIMNTIMLEPVTLPSSRQ-------------------------TLDKSTIARHLLSDQTDPFNRSPLTME 221 (246)
Q Consensus 167 ~~~iPdef~cPIt~~lM~DPVilp~sG~-------------------------tydRs~I~~~L~~~~~dP~tr~pLt~~ 221 (246)
+.|+-+.+.+--|.+|+-.|.-|...++ -+|-.-+.+||..++..|.||+||+.+
T Consensus 32 FkDaAdh~~ddaT~CLFGe~LSL~np~qQVIGLA~~~td~~~~Ysqe~nK~l~FMDMkKLAq~La~kP~HPm~r~~L~ae 111 (122)
T 2fd4_A 32 FKDAADHHTDDVTHCLFGGELSLSNPDQQVIGLAGNPTDTSQPYSQEGNKDLAFMDMKKLAQFLAGKPEHPMTRETLNAE 111 (122)
T ss_dssp CCCCCC----CCCBCTTSSBCCTTCTTCCEEEEESSCCCTTSCCC-----CEEEEEHHHHHHHHHHSCBCTTTCCBCSTT
T ss_pred cchhhhcCCCCcceecccCccccCCCCceeEEeecCCCCCccccchhcCcceeeeeHHHHHHHhcCCCCCCcccCccchh
Confidence 5666666666677777777665533211 267788999999999999999999876
Q ss_pred C
Q psy1723 222 Q 222 (246)
Q Consensus 222 ~ 222 (246)
.
T Consensus 112 n 112 (122)
T 2fd4_A 112 N 112 (122)
T ss_dssp T
T ss_pred h
Confidence 4
No 86
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=48.43 E-value=5.7 Score=29.73 Aligned_cols=15 Identities=20% Similarity=0.436 Sum_probs=13.3
Q ss_pred hcCCCCccccccccc
Q psy1723 167 LAGAPDEYLDPIMNT 181 (246)
Q Consensus 167 ~~~iPdef~cPIt~~ 181 (246)
+.++|++|.||+++.
T Consensus 62 fedlPddW~CPvCga 76 (87)
T 1s24_A 62 FEDIPDDWCCPDCGA 76 (87)
T ss_dssp GGGCCTTCCCSSSCC
T ss_pred hhHCCCCCCCCCCCC
Confidence 578999999999985
No 87
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=31.63 E-value=5.9 Score=24.62 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=13.0
Q ss_pred CccccccccccCCCceec
Q psy1723 172 DEYLDPIMNTIMLEPVTL 189 (246)
Q Consensus 172 def~cPIt~~lM~DPVil 189 (246)
+.|+|||+..-+..|-.|
T Consensus 4 EGFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEEECTTTCCEESSHHHH
T ss_pred cccCCcHHHHHcCCHHHH
Confidence 469999998776665444
No 88
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=24.71 E-value=21 Score=21.18 Aligned_cols=17 Identities=6% Similarity=0.000 Sum_probs=13.0
Q ss_pred CCccccccccccCCCce
Q psy1723 171 PDEYLDPIMNTIMLEPV 187 (246)
Q Consensus 171 Pdef~cPIt~~lM~DPV 187 (246)
|..|.||++...|-||=
T Consensus 1 ~~k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDMD 17 (28)
T ss_dssp CCCEECTTSSCEESSHH
T ss_pred CCcccCccccccCcChH
Confidence 45788999998777653
No 89
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.85 E-value=40 Score=27.54 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=8.4
Q ss_pred CCCccccccccccC
Q psy1723 170 APDEYLDPIMNTIM 183 (246)
Q Consensus 170 iPdef~cPIt~~lM 183 (246)
.+..|.||+|+-+.
T Consensus 135 ~~~~~~C~~CG~i~ 148 (170)
T 3pwf_A 135 IKKVYICPICGYTA 148 (170)
T ss_dssp CSCEEECTTTCCEE
T ss_pred CCCeeEeCCCCCee
Confidence 45667777755443
Done!