RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1723
         (246 letters)



>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 98

 Score = 69.8 bits (170), Expect = 3e-16
 Identities = 54/84 (64%), Positives = 70/84 (83%)

Query: 161 QSDEALLAGAPDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTM 220
           Q +E   A A DE+LDPIM+T+M +PV LPSSR T+D+STIARHLLSDQTDPFNRSPLTM
Sbjct: 10  QQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69

Query: 221 EQVIPNTQLQTQIQDWIRQCRQKS 244
           +Q+ PNT+L+ +IQ W+ + +Q+S
Sbjct: 70  DQIRPNTELKEKIQRWLAERKQQS 93


>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 78

 Score = 55.9 bits (134), Expect = 3e-11
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHL-LSDQTDPFNRSPLTMEQVIPNTQL 229
           P+ +  PI   +M +PV + +  QT ++S+I + L    +T P ++  L    + PN  L
Sbjct: 6   PEYFRCPISLELMKDPVIVSTG-QTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 230 QTQIQDWIRQ 239
           ++ I  W   
Sbjct: 65  KSLIALWCES 74


>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
           protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 80

 Score = 41.0 bits (95), Expect = 8e-06
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 171 PDEYLDPIMNTIMLEPVTLPSSRQTLDKSTIARHL-LSDQTDPFNRSPLTMEQVIPNTQL 229
           PD     I   +M EP     S  T D+  I  HL      +P  RSPLT EQ+IPN  +
Sbjct: 5   PDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 63

Query: 230 QTQIQDWIRQ 239
           +  I  +I +
Sbjct: 64  KEVIDAFISE 73


>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 56

 Score = 32.8 bits (74), Expect = 0.003
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 175 LDPIMNTIMLEPVTLPSSRQTLDKSTIARHLLSDQTDPFNRSPLTMEQVIP 225
           L  I   +   PV  P SR   +KS + +++     DP    PL++E+++ 
Sbjct: 2   LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 52


>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli
          [TaxId: 562]}
          Length = 64

 Score = 27.0 bits (60), Expect = 0.45
 Identities = 6/37 (16%), Positives = 11/37 (29%)

Query: 26 SGFLQHIGMMARFDNILGNETIHTLEYLTSEIRSIFC 62
          +   +  G+      +L    I  + Y  S     F 
Sbjct: 9  NDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFL 45


>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 119

 Score = 26.6 bits (59), Expect = 1.7
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 11 TLEFHVGHESYRKSDSGFLQHIGMMARFDNILGNETIHTLEY 52
          TL F     S + +D  FL+H G   R        T +TLE+
Sbjct: 38 TLAFQDQRYSVQTADHRFLRHDG---RLVARPEPATGYTLEF 76


>d1fmd1_ b.121.4.1 (1:) Aphthovirus (Foot-and-mouth disease virus)
          coat proteins {FMDV (Foot-and-mouth disease virus),
          strain bfs, 1860 [TaxId: 12110]}
          Length = 207

 Score = 25.9 bits (57), Expect = 4.7
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 8  VTTTLEFHVGHESYRK---SDSGFLQHIGMMARFDNILGNETIHTL 50
          VTTT+E + G    ++   +D  F+     + RF  +  ++  HTL
Sbjct: 11 VTTTVENYGGETQVQRRHHTDVAFV-----LDRFVKVTVSDNQHTL 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0632    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 876,292
Number of extensions: 37858
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 8
Length of query: 246
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,268,006
Effective search space: 206684978
Effective search space used: 206684978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)