BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17231
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
+VI+ G GVGK+SL R+ DTF + KST+G+D K ++ + I++Q+WDT G
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER SITS+YY+ A+ ILV+ + +F L + + I YA E+A++ L GN C
Sbjct: 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+A DT+ + S ST+G+D + ++D ++I++Q+WDT G
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L GN
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+A DT+ + S ST+G+D + ++D ++I++Q+WDT G
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L GN
Sbjct: 85 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 138
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+A DT+ + S ST+G+D + ++D ++I++Q+WDT G
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 58
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L GN
Sbjct: 59 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 112
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+A DT+ + S ST+G+D + ++D ++I++Q+WDT G
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L GN
Sbjct: 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+A DT+ + S ST+G+D + ++D ++I++Q+WDT G
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L GN
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 119
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+A DT+ + S ST+G+D + ++D ++I++Q+WDT G
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L GN
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 119
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGK+ L R+A DT+ + S ST+G+D + ++D ++I++Q+WDT G
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L GN
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++ GE VGK+SL R+ YD+F ++ ++T+G+D +K ++DR++++QLWDT G
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNN----- 123
ER S+ SY + + A++V+ + N SF S+ + ++ T + I L GN
Sbjct: 62 ERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD 121
Query: 124 ---------EQCHNLISSTY-KTSCKTGEGVEEMFADIGRQLI 156
EQ +S + +TS KTG V+++F + L+
Sbjct: 122 KRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALL 164
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 17/162 (10%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G+ GVGK+ L R+ F++ + ST+G+D NK VD +++Q+WDT G
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNN-EQCH 127
ER S+T +YY+ A A +L++ + N ASF + L EI YA+ + + L GN + H
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
Query: 128 NLISST--------------YKTSCKTGEGVEEMFADIGRQL 155
+ +TS KTG V+ F I ++L
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 84/167 (50%), Gaps = 18/167 (10%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G GVGK+ L RR+ F + +T+G+D K +++ +++Q+WDT G
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLF--PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGN------ 122
ER SIT SYY+ A A IL + + SF L + L EI YA N I L GN
Sbjct: 86 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145
Query: 123 ----NEQCHNLISST-----YKTSCKTGEGVEEMFADIGRQLILSNR 160
++Q S +TS K + VE++F D+ +LI R
Sbjct: 146 RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR 192
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 22/175 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+A DT+ + S ST+G+D + ++D ++I++Q+WDT G
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQ--C 126
ER +ITSSYY+ A I+V+ + + S+ + Q L EI YA EN L GN
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTT 128
Query: 127 HNLISST-------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTM 168
++ +T +TS K VE+ F + ++ + R+ L+ +
Sbjct: 129 KKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI----KKRMGLEVL 179
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++ GE VGK+SL R+ YD+F ++ ++T+G+D +K ++DR++++QLWDT G
Sbjct: 16 KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 73
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNN----- 123
ER S+ SY + + A++V+ + N SFH S+ + ++ T + I L GN
Sbjct: 74 ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133
Query: 124 ----------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
+ L +TS K G V+++F + L
Sbjct: 134 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 11 VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME 70
++L G+ GVGKS L R+A DT+ + S ST+G+D + ++D ++I++Q+WDT G E
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 58
Query: 71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
R +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L GN
Sbjct: 59 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 111
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+A DT+ + S ST+G+D + ++D ++I++Q+WDT G
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +ITSSYY+ A I+V+ + + S+ + Q L EI YA EN L GN
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 122
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GKSSL R+ D F+ ++ST+G F++ V+D +++ ++WDT G
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEF--QESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER S+ YY+ A AAI+VF + N ASF + + E+ N + L GN +
Sbjct: 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131
Query: 129 LI------SSTY---------KTSCKTGEGVEEMFADIGRQL 155
+ TY +TS KT V+E+F +I R+L
Sbjct: 132 ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 3/113 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+A DT+ + S ST+G+D + ++D ++I++Q+WDT G
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCG 121
ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L G
Sbjct: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG 120
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 86/187 (45%), Gaps = 23/187 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KVI+ G+ GVGK+SL +Y F S+ K+T+G D KE VDDR + MQ+WDT G+
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNE 124
ER S+ ++Y+ A+ +LVF + +F L E + A EN + GN
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 125 QCHNLISST---------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMG 169
N +T ++TS K VE+ F I R L + +EL
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN-ALKQETEVELYNEF 186
Query: 170 AGGIGTD 176
I D
Sbjct: 187 PEPIKLD 193
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 80/129 (62%), Gaps = 6/129 (4%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+A DT+ + S ST+G+D + ++++++++Q+WDT G
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTY--TDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER +ITSSYY+ A I+V+ + + SF + Q + EI YA EN L GN +C +
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGN--KC-D 125
Query: 129 LISSTYKTS 137
L+S TS
Sbjct: 126 LVSKRVVTS 134
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++ GE VGK+SL R+ YD+F ++ ++T+G+D +K ++DR+I++QLWDT G+
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGL 72
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNN----- 123
ER S+ SY + + AA++V+ + N SF ++ + ++ T + I L GN
Sbjct: 73 ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132
Query: 124 ----------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
+ L +TS K G V+++F + L
Sbjct: 133 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 83/176 (47%), Gaps = 23/176 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KVI+ G+ GVGK+SL +Y F S+ K+T+G D KE VDDR + MQ+WDT G
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNE 124
ER S+ ++Y+ A+ +LVF + +F L E + A EN + GN
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 125 QCHNLISST---------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLEL 165
N +T ++TS K VE+ F I R L + +EL
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN-ALKQETEVEL 182
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++ GE VGK+S+ R+ YDTF ++ +ST+G+D +K +D+ +++QLWDT G
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTF--DNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNNEQCHN 128
ER S+ SY + + AAI+V+ + N SF ++ + +I+ ++ I L GN +
Sbjct: 61 ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 120
Query: 129 LISSTY---------------KTSCKTGEGVEEMFADIGRQL 155
L TY +TS K G ++ +F +L
Sbjct: 121 LRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++ GE VGK+SL R+ YD+F ++ ++T+G+D +K ++DR+I++QLWDT G
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQ 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNN----- 123
ER S+ SY + + AA++V+ + N SF ++ + ++ T + I L GN
Sbjct: 66 ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 125
Query: 124 ----------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
+ L +TS K G V+++F + L
Sbjct: 126 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 85/187 (45%), Gaps = 23/187 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KVI+ G+ GVGK+SL +Y F S+ K+T+G D KE VDDR + MQ+WDT G
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNE 124
ER S+ ++Y+ A+ +LVF + +F L E + A EN + GN
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 125 QCHNLISST---------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMG 169
N +T ++TS K VE+ F I R L + +EL
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN-ALKQETEVELYNEF 186
Query: 170 AGGIGTD 176
I D
Sbjct: 187 PEPIKLD 193
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 85/187 (45%), Gaps = 23/187 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KVI+ G+ GVGK+SL +Y F S+ K+T+G D KE VDDR + MQ+WDT G
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNE 124
ER S+ ++Y+ A+ +LVF + +F L E + A EN + GN
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 125 QCHNLISST---------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMG 169
N +T ++TS K VE+ F I R L + +EL
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN-ALKQETEVELYNEF 186
Query: 170 AGGIGTD 176
I D
Sbjct: 187 PEPIKLD 193
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++ GE VGK+SL R+ YD+F ++ ++T+G+D +K ++DR++++QLWDT G+
Sbjct: 18 KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGL 75
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNN----- 123
ER S+ SY + + A++V+ + N SF ++ + ++ T + I L GN
Sbjct: 76 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 124 ----------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
+ L +TS K G V+++F + L
Sbjct: 136 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++ GE VGK+SL R+ YD+F ++ ++T+G+D +K ++DR++++QLWDT G+
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGL 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNN----- 123
ER S+ SY + + A++V+ + N SF ++ + ++ T + I L GN
Sbjct: 66 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 125
Query: 124 ----------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
+ L +TS K G V+++F + L
Sbjct: 126 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G+ GVGKS+L R+ + F S KST+G++ + +VD ++I+ Q+WDT G+
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
ER +ITS+YY+ A A+LV+ + ++ + + L E+ +A+ N I L GN +
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148
Query: 129 L 129
L
Sbjct: 149 L 149
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KVIL G+ GVGKSSL RY + F S + T+G++ N++ +VD R + +Q+WDT G
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFH--TIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE 113
ER S+ + +Y+ A+ +L FS+D+ SF L E + YA+
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYAD 110
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 82.8 bits (203), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+IL G+ GVGKSSL RY + F S T+G++ NK+ +VD + MQ+WDT G
Sbjct: 13 KIILLGDGGVGKSSLMNRYVTNKF--DSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE 113
ER S+ + +Y+ ++ +L FS+D++ SF LS E + YA+
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 114
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 25/184 (13%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSI 59
M+S K KVI+ G+ GVGK+SL RY D + S K+T+G D KE VD D+
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKY--SQQYKATIGADFLTKEVTVDGDKVA 58
Query: 60 QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----EN 114
MQ+WDT G ER S+ ++Y+ A+ +LV+ + NA+SF + E + +A E
Sbjct: 59 TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET 118
Query: 115 AKIFLCGNN---EQCHNLIS--------------STYKTSCKTGEGVEEMFADIGRQLIL 157
+ GN E+ ++S + TS K V+ F +I R +
Sbjct: 119 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178
Query: 158 SNRS 161
N++
Sbjct: 179 QNQA 182
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G+ GVGKS+L R+ + F S KST+G++ + +VD ++I+ Q+WDT G+
Sbjct: 10 KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
ER +ITS+YY+ A A+LV+ + ++ + + L E+ +A+ N I L GN +
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 127
Query: 129 L 129
L
Sbjct: 128 L 128
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KVIL G+ GVGKSSL RY + F + T+G++ NK+ +VD + MQ+WDT G
Sbjct: 11 KVILLGDGGVGKSSLMNRYVTNKF--DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE 113
ER S+ + +Y+ ++ +L FS+D++ SF LS E + YA+
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 112
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KVIL G+ GVGKSSL RY + F + T+G++ NK+ +VD + MQ+WDT G
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKF--DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE 113
ER S+ + +Y+ ++ +L FS+D++ SF LS E + YA+
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 110
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G+ GVGKS+L R+ + F S KST+G++ + +VD ++I+ Q+WDT G
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
ER +ITS+YY+ A A+LV+ + ++ + + L E+ +A+ N I L GN +
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148
Query: 129 L 129
L
Sbjct: 149 L 149
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++ GE VGK+SL R+ YD+F ++ ++T+G+D +K ++DR++++QLWDT G
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNN----- 123
ER S+ SY + + A++V+ + N SF ++ + ++ T + I L GN
Sbjct: 61 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 120
Query: 124 ----------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
+ L +TS K G V+++F + L
Sbjct: 121 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G VGK+S RYA D+F + + ST+G+D K +D+ I++Q+WDT G+
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSF--TPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGL 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +IT++YY+ A IL + + N SF+ + +I TY+ +NA++ L GN
Sbjct: 68 ERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G+ GVGKS+L R+ + F S KST+G++ + +VD ++I+ Q+WDT G
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
ER +ITS+YY+ A A+LV+ + ++ + + L E+ +A+ N I L GN +
Sbjct: 80 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 139
Query: 129 L 129
L
Sbjct: 140 L 140
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G+ GVGKS+L R+ + F S KST+G++ + +VD ++I+ Q+WDT G+
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
ER +ITS+YY+ A A+LV+ + ++ + + L E+ +A+ N I L GN +
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRH 130
Query: 129 L 129
L
Sbjct: 131 L 131
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G+ GVGKS+L R+ + F S KST+G++ + +VD ++I+ Q+WDT G+
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
ER +ITS+YY+ A A+LV+ + ++ + + L E+ +A+ N I L GN +
Sbjct: 65 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRH 124
Query: 129 L 129
L
Sbjct: 125 L 125
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 18/158 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G+ GVGKS+L R+ + F S KST+G++ + +VD ++I+ Q+WDT G
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHN 128
ER ITS+YY+ A A+LV+ + ++ + + L E+ +A+ N I L GN +
Sbjct: 65 ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124
Query: 129 LIS---------------STYKTSCKTGEGVEEMFADI 151
L + S +TS VEE F +I
Sbjct: 125 LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 17/172 (9%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G+ GVGKSSL R+A +TF S S +T+G+D + +++ +++Q+WDT G
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTF--SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN-NEQCHN 128
ER +ITS+YY+ I+V+ + +A SF + + L EI ++ L GN N+
Sbjct: 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128
Query: 129 LISST--------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQ 166
+ T ++TS K VEEMF I ++ + + L Q
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G VGK+S RYA D+F + + ST+G+D K +D+ I++Q+WDT G
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSF--TPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L GN
Sbjct: 65 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 118
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 74/121 (61%), Gaps = 3/121 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS+L R+ D F S KST+G++ + +V+++ I+ Q+WDT G+
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFNIES--KSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER +ITS+YY+ A A++V+ + ++S+ + L E+ A +N + L GN +
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAH 129
Query: 129 L 129
L
Sbjct: 130 L 130
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 17/154 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G VGKSS+ +RY F + K T+G+D ++ +V+D +++ LWDT G
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIF--TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ-------HLLEIVTYAENAKIFL--- 119
E +IT +YY+ A+A +LVFS + SF +S + +I T KI L
Sbjct: 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 120 -CGNNEQCHNLISST----YKTSCKTGEGVEEMF 148
C NE+ L Y+TS K V E+F
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G VGK+S RYA DTF + + ST+G+D K ++ +++Q+WDT G
Sbjct: 25 KLLIIGNSSVGKTSFLFRYADDTF--TPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L GN
Sbjct: 83 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN 136
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G VGK+S RYA D+F + + ST+G+D K D+ I++Q+WDT G
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSF--TPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +IT++YY+ A +L++ + N SF + +I TY+ +NA++ L GN
Sbjct: 82 ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGN 135
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G GVGKS L R++ DT+ ++ ST+G+D K ++D +++++Q+WDT G
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTY--TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGN 122
ER +ITSSYY+ + I+V+ + + SF+ + L EI YA + + L GN
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G GVGKS L R++ DT+ ++ ST+G+D K ++D +++++Q+WDT G
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTY--TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGN 122
ER +ITSSYY+ + I+V+ + + SF+ + L EI YA + + L GN
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G GVGKS L R++ DT+ ++ ST+G+D K ++D +++++Q+WDT G
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTY--TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGN 122
ER +ITSSYY+ + I+V+ + + SF+ + L EI YA + + L GN
Sbjct: 81 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 134
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L GE GVGK++L R+ + F S ++T+G++ + + +++ Q+WDT G+
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEF--SHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGN 122
ER +ITS+YY+ A A+LVF L ++ V+ + L E+ +AE + L GN
Sbjct: 85 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 69/114 (60%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L GE GVGK++L R+ + F S ++T+G++ + + +++ Q+WDT G+
Sbjct: 12 KVVLIGESGVGKTNLLSRFTRNEF--SHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 69
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGN 122
ER +ITS+YY+ A A+LVF L ++ V+ + L E+ +AE + L GN
Sbjct: 70 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 123
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 21/167 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L GE VGKSS+ R+ + F + +++ T+G + +++ +++ ++WDT G
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDF--AENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN----- 123
ER AS+ YY+ A+AA++V+ + SF + E+ A ++ I L GN
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 124 ---------EQCHNLISST----YKTSCKTGEGVEEMFADIGRQLIL 157
E+ L ++TS KTGE V ++F IG ++ L
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ VGK+ + +R+ F S + ST+G+D K ++ + +++Q+WDT G
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAF--SERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER +IT SYY+ A AIL + + +SF + + ++ YA N L GN
Sbjct: 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148
Query: 129 L----------------ISSTYKTSCKTGEGVEEMFADIGRQLILSN 159
L I +TS K VEE F + +LI+ +
Sbjct: 149 LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G G GKS L ++ + F S+ T+G++ ++ V +++++Q+WDT G
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNH--TIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER S+T SYY+ A A+LV+ + + +++ L+ L + T A N + LCGN +
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144
Query: 129 LISSTY---------------KTSCKTGEGVEEMFADIGRQLI 156
T+ +TS TGE VEE F R ++
Sbjct: 145 EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 187
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV-DDRSIQMQLWDTGG 68
K++L G+ GVGKS+L R+ D F S KST+G++ K ++ +++ I+ Q+WDT G
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLES--KSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCH 127
ER +ITS+YY+ A A+LV+ + SF + + L E+ A+ N I L GN
Sbjct: 67 QERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLK 126
Query: 128 NL 129
+L
Sbjct: 127 HL 128
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ GE GVGKSSL R+ DTF +T+G+D K VD ++ +WDT G
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTF--DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF--LCGN 122
ER ++T SYY+ A+ ILV+ + +F L L E+ TY I L GN
Sbjct: 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGN 129
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+ D F + S +T+G+D K ++ + +++QLWDT G
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 62
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +IT++YY+ A ILV+ + + +F + Q + +A + A++ L GN
Sbjct: 63 ERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+ D F + S +T+G+D K ++ + +++QLWDT G
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +IT++YY+ A ILV+ + + +F + Q + +A + A++ L GN
Sbjct: 80 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 133
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+ D F + S +T+G+D K ++ + +++QLWDT G
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +IT++YY+ A ILV+ + + +F + Q + +A + A++ L GN
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 120
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G G GKS L ++ F S+ T+G++ +K V + +++Q+WDT G+
Sbjct: 10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNH--TIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER S+T SYY+ A A+LV+ + + +++ L+ L + A +N I LCGN +
Sbjct: 68 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 127
Query: 129 LISSTY---------------KTSCKTGEGVEEMFADIGRQLI 156
T+ +TS TGE VEE F R+++
Sbjct: 128 DREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 170
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
K+ + K++L GE VGKSSL R+ F ++ST+G + +DD +++ ++W
Sbjct: 4 KICQFKLVLLGESAVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
DT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L GN
Sbjct: 62 DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 121
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
N + ++ TS KT V E+F I ++L
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G G GKS L ++ F S+ T+G++ +K V + +++Q+WDT G
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNH--TIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER S+T SYY+ A A+LV+ + + +++ L+ L + A +N I LCGN +
Sbjct: 70 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129
Query: 129 LISSTY---------------KTSCKTGEGVEEMFADIGRQLI 156
T+ +TS TGE VEE F R+++
Sbjct: 130 DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 172
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 18/167 (10%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
K+ + K++L GE VGKSSL R+ F ++ST+G + +DD +++ ++W
Sbjct: 2 KICQFKLVLLGESAVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 59
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
DT G+ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L GN
Sbjct: 60 DTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 119
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
N + ++ TS KT V E+F I ++L
Sbjct: 120 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+ D F + S +T+G+D K ++ + +++Q+WDT G
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +IT++YY+ A ILV+ + + +F + Q + +A + A++ L GN
Sbjct: 63 ERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G G GKS L ++ F S+ T+G++ +K V + +++Q+WDT G
Sbjct: 13 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNH--TIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER S+T SYY+ A A+LV+ + + +++ L+ L + A +N I LCGN +
Sbjct: 71 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 130
Query: 129 LISSTY---------------KTSCKTGEGVEEMFADIGRQLI 156
T+ +TS TGE VEE F R+++
Sbjct: 131 DREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 173
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+ D F + S +T+G+D K ++ + +++Q+WDT G
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKF--NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +IT++YY+ A ILV+ + + +F + Q + +A + A++ L GN
Sbjct: 63 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 70/114 (61%), Gaps = 3/114 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS+L R+ + F S KST+G++ + +++ + I+ Q+WDT G
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDS--KSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN 122
ER +ITS+YY+ A A++V+ + ++S+ + L E+ A +N + L GN
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGN 126
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
K+ + K++L GE VGKSSL R+ F ++ST+G + +DD +++ ++W
Sbjct: 4 KICQFKLVLLGESAVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
DT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L GN
Sbjct: 62 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 121
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
N + ++ TS KT V E+F I ++L
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
K+ + K++L GE VGKSSL R+ F ++ST+G + +DD +++ ++W
Sbjct: 3 KICQFKLVLLGESAVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
DT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L GN
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
N + ++ TS KT V E+F I ++L
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
K+ + K++L GE VGKSSL R+ F ++ST+G + +DD +++ ++W
Sbjct: 3 KICQFKLVLLGESPVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
DT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L GN
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
N + ++ TS KT V E+F I ++L
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
K+ + K++L GE VGKSSL R+ F ++ST+G + +DD +++ ++W
Sbjct: 3 KICQFKLVLLGESKVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
DT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L GN
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
N + ++ TS KT V E+F I ++L
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
K+ + K++L GE VGKSSL R+ F ++ST+G + +DD +++ ++W
Sbjct: 3 KICQFKLVLLGESRVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
DT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L GN
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
N + ++ TS KT V E+F I ++L
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
K+ + K++L GE VGKSSL R+ F ++ST+G + +DD +++ ++W
Sbjct: 3 KICQFKLVLLGESEVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
DT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L GN
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
N + ++ TS KT V E+F I ++L
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
K+ + K++L GE VGKSSL R+ F ++ST+G + +DD +++ ++W
Sbjct: 3 KICQFKLVLLGESLVGKSSLVLRFVKGQF--HEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN 123
DT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L GN
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 124 EQCHNLISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
N + ++ TS KT V E+F I ++L
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L GE VGKSSL R+ F ++ST+G + +DD +++ ++WDT G+
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQF--HEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER S+ YY+ A+AAI+V+ + N +F + E+ A N I L GN +
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
+ ++ TS KT V E+F I ++L
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K I+ G+ GVGKS L ++ F++ T+G++ + +V + I++Q+WDT G
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPH--TIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER ++T SYY+ A A++V+ + ++++ LS L + N I L GN
Sbjct: 75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134
Query: 129 LISSTY---------------KTSCKTGEGVEEMFADIGRQL 155
TY + S KTGE VE+ F + +++
Sbjct: 135 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 18/175 (10%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
K+ + K++L GE VGKSSL R+ F ++ST+G + +DD +++ ++W
Sbjct: 5 KICQFKLVLLGESAVGKSSLVLRFVKGQF--HEYQESTIGAAFLTQSVCLDDTTVKFEIW 62
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNN 123
DT G ER S+ YY+ A+AAI+V+ + N +F + E+ A + + L GN
Sbjct: 63 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 122
Query: 124 EQCHNLISSTY---------------KTSCKTGEGVEEMFADIGRQLILSNRSRL 163
N Y +TS KT V ++F I ++L S L
Sbjct: 123 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNL 177
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L GE VGKSSL R+ F ++ST+G + +DD +++ ++WDT G
Sbjct: 5 KLVLLGESAVGKSSLVLRFVKGQF--HEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER S+ YY+ A+AAI+V+ + N +F + E+ A N I L GN +
Sbjct: 63 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 122
Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
+ ++ TS KT V E+F I ++L
Sbjct: 123 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 20/164 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L GE VGK+SL RY + F + +TLG K+ + + + + +WDT G
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKF--NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC--GNN---- 123
ER ++ YY+ + AILV+ + + SF + + E+ N +I LC GN
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-EICLCIVGNKIDLE 124
Query: 124 EQCHNLI-----------SSTYKTSCKTGEGVEEMFADIGRQLI 156
++ H I + Y TS K +G+EE+F D+ +++I
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGK+ + R++ D F +S+ ST+G+D + ++D + I++Q+WDT G
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAF--NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA 112
ER +IT++YY+ A +LV+ + N SF + + I +A
Sbjct: 66 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA 108
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K I+ G+ GVGKS L ++ F++ T+G++ + +V + I++Q+WDT G
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPH--TIGVEFGTRIIEVSGQKIKLQIWDTAGQ 89
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
R ++T SYY+ A A++V+ + ++++ LS L + N I L GN
Sbjct: 90 GRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 149
Query: 129 LISSTY---------------KTSCKTGEGVEEMFADIGRQL 155
TY + S KTGE VE+ F + +++
Sbjct: 150 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGK+ + R++ D F +S+ ST+G+D + ++D + I++Q+WDT G
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAF--NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA 112
ER +IT++YY+ A +LV+ + N SF + + I +A
Sbjct: 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA 110
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E KV L G+ GVGKSS+ R+ D F + S T+G K + + +WDT
Sbjct: 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNIS--PTIGASFMTKTVPCGNELHKFLIWDTA 80
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-AENAKIFLCGN---- 122
G ER S+ YY+ + AA++V+ + SF+ L + + E+ + EN + + GN
Sbjct: 81 GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL 140
Query: 123 -----------NEQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
E ++ + +TS K +EE+F I RQ+
Sbjct: 141 SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 20/164 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L GE VGK+SL RY + F + +TL K+ + + + + +WDT G
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKF--NDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC--GNN---- 123
ER ++ YY+ + AILV+ + + SF + + E+ N +I LC GN
Sbjct: 80 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-EICLCIVGNKIDLE 138
Query: 124 EQCHNLI-----------SSTYKTSCKTGEGVEEMFADIGRQLI 156
++ H I + Y TS K +G+EE+F D+ +++I
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 182
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L GE VGKSSL R+ F ++ST+ + +DD +++ ++WDT G
Sbjct: 7 KLVLLGESAVGKSSLVLRFVKGQF--HEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER S+ YY+ A+AAI+V+ + N +F + E+ A N I L GN +
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQL 155
+ ++ TS KT V E+F I ++L
Sbjct: 125 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 20/164 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L GE VGK+SL RY + F + +TL K+ + + + + +WDT G
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKF--NDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC--GNN---- 123
ER ++ YY+ + AILV+ + + SF + + E+ N +I LC GN
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-EICLCIVGNKIDLE 124
Query: 124 EQCHNLI-----------SSTYKTSCKTGEGVEEMFADIGRQLI 156
++ H I + Y TS K +G+EE+F D+ +++I
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 22/164 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K I+ G+ GVGKS L ++ F T+G++ + +D + I++Q+WDT G
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQC-- 126
E SIT SYY+ A A+LV+ + +F+ L+ L + ++ N I L GN
Sbjct: 70 ESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLES 129
Query: 127 ---------------HNLISSTYKTSCKTGEGVEEMFADIGRQL 155
H LI +TS KT VEE F + +++
Sbjct: 130 RREVKKEEGEAFAREHGLI--FMETSAKTASNVEEAFINTAKEI 171
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 22/164 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K I+ G+ GVGKS L ++ F T+G++ + +D + I++Q+WDT G
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-AENAKIFLCGNNEQC-- 126
E SIT SYY+ A A+LV+ + +F+ L+ L + + + N I L GN
Sbjct: 81 ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140
Query: 127 ---------------HNLISSTYKTSCKTGEGVEEMFADIGRQL 155
H LI +TS KT VEE F + +++
Sbjct: 141 RRDVKREEGEAFAREHGLI--FMETSAKTACNVEEAFINTAKEI 182
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+I+ G+ VGK+ L R+ F + ++T+G+D + +D I++QLWDT G
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 70 ERV-ASITSSYYKFAEAAILVFSLDNAASFHVLS-------QHLLEIVTYAENAKIFLCG 121
ER S+ YY+ A + V+ + N ASFH L QHLL A + L G
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-----ANDIPRILVG 134
Query: 122 N 122
N
Sbjct: 135 N 135
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 18/133 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKE--YKVDD--------RSI 59
K + G+ GVGK+S+ +Y F +S +T+G+D K Y+ + + I
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKF--NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 60 QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF----HVLSQHLLEIVTYAENA 115
+QLWDT G+ER S+T+++++ A +L+F L N SF + +SQ L++ Y+EN
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQ--LQMHAYSENP 128
Query: 116 KIFLCGNNEQCHN 128
I LCGN +
Sbjct: 129 DIVLCGNKSDLED 141
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 20/164 (12%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
KVI+ G GVGKS+L ++ YD F+ D++ K+ +D +Q+ + DT G
Sbjct: 7 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQIDILDTAG 63
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN--- 123
+E A+I +Y++ E + VFS+ SF + +I V EN L GN
Sbjct: 64 LEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 123
Query: 124 --------EQCHNLIS----STYKTSCKTGEGVEEMFADIGRQL 155
E+ N + +TS KT V+++F D+ R++
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 15/121 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+I+ G+ VGK+ L R+ F + ++T+G+D + +D I++QLWDT G
Sbjct: 31 KIIVIGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 70 ERV-ASITSSYYKFAEAAILVFSLDNAASFHVLS-------QHLLEIVTYAENAKIFLCG 121
ER S+ YY+ A + V+ N ASFH L QHLL A + L G
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLL-----ANDIPRILVG 143
Query: 122 N 122
N
Sbjct: 144 N 144
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
KVI+ G GVGKS+L ++ YD F+ D++ K+ +D +Q+ + DT G
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQIDILDTAG 61
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN--- 123
E A+I +Y++ E + VFS+ SF + +I V EN L GN
Sbjct: 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121
Query: 124 --------EQCHNLIS----STYKTSCKTGEGVEEMFADIGRQL 155
E+ N + +TS KT V+++F D+ R++
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
KVI+ G GVGKS+L ++ YD F+ D++ K+ +D +Q+ + DT G
Sbjct: 19 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQIDILDTAG 75
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN--- 123
E A+I +Y++ E + VFS+ SF + +I V EN L GN
Sbjct: 76 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135
Query: 124 --------EQCHNLIS----STYKTSCKTGEGVEEMFADIGRQL 155
E+ N + +TS KT V+++F D+ R++
Sbjct: 136 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
KVI+ G GVGKS+L ++ YD F+ D++ K+ +D +Q+ + DT G
Sbjct: 7 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQIDILDTAG 63
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN--- 123
E A+I +Y++ E + VFS+ SF + +I V EN L GN
Sbjct: 64 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 123
Query: 124 --------EQCHNLIS----STYKTSCKTGEGVEEMFADIGRQL 155
E+ N + +TS KT V+++F D+ R++
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 20/164 (12%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
KVI+ G GVGKS+L ++ YD F+ D++ K+ +D +Q+ + DT G
Sbjct: 15 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQIDILDTAG 71
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN--- 123
E A+I +Y++ E + VFS+ SF + +I V EN L GN
Sbjct: 72 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131
Query: 124 --------EQCHNLIS----STYKTSCKTGEGVEEMFADIGRQL 155
E+ N + +TS KT V+++F D+ R++
Sbjct: 132 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ VGKSS R + F + S +TLG+D K VD +QLWDT G
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENIS--ATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER SI SY++ A+ +L++ + SF + + + I A E I L GN +
Sbjct: 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147
Query: 129 LISSTYKTSCKTGEGVEEM 147
++T C G E++
Sbjct: 148 -TAATEGQKCVPGHFGEKL 165
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 21/165 (12%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
KVI+ G GVGKS+L ++ YD F+ D++ K+ +D +Q+ + DT G
Sbjct: 8 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQIDILDTAG 64
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKIFLCGNNEQ 125
+E A+I +Y++ E +LVFS+ SF + + +L + + + + GN
Sbjct: 65 LEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSD 124
Query: 126 CHNLISST---------------YKTSCKTGEGVEEMFADIGRQL 155
+TS KT V+++F D+ R++
Sbjct: 125 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 21/165 (12%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
KVI+ G GVGKS+L ++ YD F+ D++ K+ +D +Q+ + DT G
Sbjct: 4 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA---DSYRKKVVLDGEEVQIDILDTAG 60
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKIFLCGNN-- 123
+E A+I +Y++ E +LVFS+ SF + + +L + + + + GN
Sbjct: 61 LEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSD 120
Query: 124 --EQCHNLISST-----------YKTSCKTGEGVEEMFADIGRQL 155
E+ + +TS KT V+++F D+ R++
Sbjct: 121 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 29/164 (17%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR----------SI 59
K++ G+ GVGK++ RY + F + +T+G+D K D + +
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKF--NPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 60 QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL--LEIVTYAENAKI 117
+QLWDT G+ER S+T+++++ A +L+F L + SF + + L+ Y EN I
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 130
Query: 118 FLCGN----------NEQCHNLISSTY-----KTSCKTGEGVEE 146
L GN NE+ ++ Y +TS TG+ VE+
Sbjct: 131 VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 29/164 (17%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR----------SI 59
K++ G+ GVGK++ RY + F + +T+G+D K D + +
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKF--NPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 60 QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL--LEIVTYAENAKI 117
+QLWDT G+ER S+T+++++ A +L+F L + SF + + L+ Y EN I
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 130
Query: 118 FLCGN----------NEQCHNLISSTY-----KTSCKTGEGVEE 146
L GN NE+ ++ Y +TS TG+ VE+
Sbjct: 131 VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E KV L G+ GVGKSS+ R+ D+F + T+G K + + + +WDT
Sbjct: 6 ELKVCLLGDTGVGKSSIMWRFVEDSF--DPNINPTIGASFMTKTVQYQNELHKFLIWDTA 63
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN---- 123
G+ER ++ YY+ + AAI+V+ + +F L + E+ + + + N
Sbjct: 64 GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 123
Query: 124 ------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
+ ++ + +TS K + E+F +I R++
Sbjct: 124 TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GK++ +R+ F +TLG++ + + I+ +WDT G+
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
+ NL Y S K+ E+ F + R+LI LE M A
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 181
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GK++ +R+ F +TLG++ + + I+ +WDT G+
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 71
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 72 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 131
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
+ NL Y S K+ E+ F + R+LI
Sbjct: 132 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 171
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GK++ +R+ F +TLG++ + + I+ +WDT G+
Sbjct: 8 KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 66 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
+ NL Y S K+ E+ F + R+LI
Sbjct: 126 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 165
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 29/164 (17%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR----------SI 59
K++ G+ GVGK++ RY + F + +T+G+D K D + +
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKF--NPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 60 QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL--LEIVTYAENAKI 117
+QLWDT G+ER S+T+++++ A +L F L + SF + L+ Y EN I
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDI 130
Query: 118 FLCGN----------NEQCHNLISSTY-----KTSCKTGEGVEE 146
L GN NE+ ++ Y +TS TG+ VE+
Sbjct: 131 VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 29/164 (17%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR----------SI 59
K++ G+ GVGK++ RY + F + +T+G+D K D + +
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKF--NPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 60 QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL--LEIVTYAENAKI 117
+QLWDT G+ER S+T+++++ A +L F L + SF + L+ Y EN I
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDI 130
Query: 118 FLCGN----------NEQCHNLISSTY-----KTSCKTGEGVEE 146
L GN NE+ ++ Y +TS TG+ VE+
Sbjct: 131 VLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
+VP K++L G+ G GK++ +R+ F +T+G++ + + I+ +W
Sbjct: 2 EVPTFKLVLVGDGGTGKTTFVKRHLTGEF--EKKYIATIGVEVHPLSFYTNFGEIKFDVW 59
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 122
DT G+E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 60 DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGN 117
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
+VP K++L G+ G GK++ +R+ F +T+G++ + + I+ +W
Sbjct: 1 EVPTFKLVLVGDGGTGKTTFVKRHLTGEF--EKKYIATIGVEVHPLSFYTNFGEIKFDVW 58
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 122
DT G+E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 59 DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGN 116
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GK++ +R+ F +TLG++ + + I+ +WDT G
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
+ NL Y S K+ E+ F + R+LI LE M A
Sbjct: 135 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 186
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E KV L G+ GVGKSS+ R+ D+F + T+G K + + + +WDT
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSF--DPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN---- 123
G ER ++ YY+ + AAI+V+ + +F L + E+ + + + N
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 124 ------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
+ ++ + +TS K + E+F +I R++
Sbjct: 123 TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GK++ +R+ T S +TLG++ + + I+ +WDT G
Sbjct: 17 KLVLVGDGGTGKTTFVKRHL--TGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
+ NL Y S K+ E+ F + R+LI LE M A
Sbjct: 135 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 186
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GK++ +R+ F +TLG++ + + I+ +WDT G
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
+ NL Y S K+ E+ F + R+LI LE M A
Sbjct: 123 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 174
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GK++ +R+ F +TLG++ + + I+ +WDT G
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
+ NL Y S K+ E+ F + R+LI LE M A
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 181
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GK++ +R+ F +TLG++ + + I+ +WDT G
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 70 EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
+ NL Y S K+ E+ F + R+LI LE M A
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 181
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 21/176 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GK++ +R+ F TLG++ + + I+ +WDT G
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
+ NL Y S K+ E+ F + R+LI LE M A
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 181
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 2 ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQM 61
A+ +VP K++L G+ G GK++ +R+ F +T+G++ + + I+
Sbjct: 6 ANGEVPTFKLVLVGDGGTGKTTFVKRHLTGEF--EKKYIATIGVEVHPLSFYTNFGEIKF 63
Query: 62 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCG 121
+WDT G+E+ + YY A+ AI++F + + ++ + ++V EN I LCG
Sbjct: 64 DVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 123
Query: 122 N 122
N
Sbjct: 124 N 124
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GK++ +R+ F +TLG++ + + I+ +WDT G
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 70 EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
+ NL Y S K+ E+ F + R+LI LE M A
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDPNLEFVAMPA 181
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 29/164 (17%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR----------SI 59
K++ G+ GVGK++ RY + F + +T+G+D K + + +
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKF--NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 60 QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL--LEIVTYAENAKI 117
+QLWDT G ER S+T+++++ A +L+F L + SF + + L+ Y EN I
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 144
Query: 118 FLCGN----------NEQCHNLISSTY-----KTSCKTGEGVEE 146
L GN NE+ ++ Y +TS TG+ VE+
Sbjct: 145 VLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 188
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GK++ +R+ F +TLG++ + + I+ +WDT G
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
+ NL Y S K+ E+ F + R+LI
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 19/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GK++ +R+ F TLG++ + + I+ +WDT G
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
+ NL Y S K+ E+ F + R+LI
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GK++ +R+ F +TLG++ + + I+ +WDT G
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
+ NL Y S K+ E+ F + R+LI
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 19/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GK++ +R+ F +TLG++ + + I+ +WDT G
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN------ 123
E+ + YY A+ AI+ F + + ++ + ++V EN I LCGN
Sbjct: 70 EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 124 ---------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
+ NL Y S K+ E+ F + R+LI
Sbjct: 130 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E K+++ G GVGKS+L + + F+ T+ D++ K+ +D + + + DT
Sbjct: 3 EYKLVVVGAPGVGKSALTIQLIQNHFVDEYD--PTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
G E +++ Y + E + VF+++N SF + Q+ +I V +++ + L GN
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 123 -------NEQCHNLISS----TYKTSCKTGEGVEEMFADIGRQL 155
+ Q +L S +TS KT +GVE+ F + R++
Sbjct: 120 LAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E K+++ G GVGKS+L + + F+ T+ D++ K+ +D + + + DT
Sbjct: 3 EYKLVVVGAPGVGKSALTIQLIQNHFVDEYD--PTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
G E +++ Y + E + VF+++N SF + Q+ +I V +++ + L GN
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 123 -------NEQCHNLISS----TYKTSCKTGEGVEEMFADIGRQL 155
+ Q +L S +TS KT +GVE+ F + R++
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E K+++ G GVGKS+L + + F+ T+ D++ K+ +D + + + DT
Sbjct: 3 EYKLVVVGARGVGKSALTIQLIQNHFVDEYD--PTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
G E +++ Y + E + VF+++N SF + Q+ +I V +++ + L GN
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 123 -------NEQCHNLISS----TYKTSCKTGEGVEEMFADIGRQL 155
+ Q +L S +TS KT +GVE+ F + R++
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 19/164 (11%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E K+++ G GVGKS+L + + F+ T+ D++ K+ +D + + + DT
Sbjct: 3 EYKLVVVGADGVGKSALTIQLIQNHFVDEYD--PTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
G E +++ Y + E + VF+++N SF + Q+ +I V +++ + L GN
Sbjct: 60 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 123 -------NEQCHNLISS----TYKTSCKTGEGVEEMFADIGRQL 155
+ Q +L S +TS KT +GVE+ F + R++
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 29/182 (15%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K + G+ VGK+ + Y + F + T+ DNF+ VD + + + LWDT G
Sbjct: 11 KCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQ 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCH- 127
E + + Y+ A+ +L FSL + AS+ +VL + + E+ +A N I L G
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127
Query: 128 ---------NLISST--------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLE 164
N+I+ST + S KT + V+ +F D +++L R E
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF-DTAIKVVLQPPRRKE 186
Query: 165 LQ 166
+
Sbjct: 187 VP 188
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K + G+ VGK+ + Y +TF + T+ DNF+ VD ++ + LWDT G
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQ 64
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
E + Y+ A+ IL FSL + AS+ +V + + E+ YA I L G
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVG 117
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
MA+I+ +K+++ G+ GK+ L ++ D F +N+ + +VD + ++
Sbjct: 2 MAAIR---KKLVIVGDVACGKTCLLIVFSKDQF---PEVYVPTVFENYVADIEVDGKQVE 55
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 56 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 115
Query: 120 CGNNEQCHN 128
GN + N
Sbjct: 116 VGNKKDLRN 124
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 29/170 (17%)
Query: 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDT 66
PE KV + G GKS+L RY T++ S + F KE VD +S + + D
Sbjct: 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG----GRFKKEIVVDGQSYLLLIRDE 74
Query: 67 GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFLCGNNE 124
GG + + + +A + VFSL++ SF + + L + ++ A + L G +
Sbjct: 75 GGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQD 129
Query: 125 QCH-----------------NLISSTYKTSCKT-GEGVEEMFADIGRQLI 156
+L TY +C T G VE +F D+ ++++
Sbjct: 130 AISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 19/164 (11%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E K+++ G GVGKS+L + + F+ T+ D++ K+ +D + + + DT
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYD--PTIE-DSYRKQVVIDGETCLLDILDTA 60
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN-- 123
G E +++ Y + E + VF+++N SF + + +I V +E+ + L GN
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD 120
Query: 124 --------EQCHNLISST----YKTSCKTGEGVEEMFADIGRQL 155
+Q +L S +TS KT +GV++ F + R++
Sbjct: 121 LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 19/164 (11%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E K+++ G GVGKS+L + + F+ T+ D++ K+ +D + + + DT
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYD--PTIE-DSYRKQVVIDGETCLLDILDTA 60
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
G E +++ Y + E + VF+++N SF + + +I V +E+ + L GN
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120
Query: 123 -------NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQL 155
+Q +L S +TS KT +GV++ F + R++
Sbjct: 121 LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G+
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
E + Y + ++ FSL + ASF HV ++ E+ + N I L G
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVG 266
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G+
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
E + Y + ++ FSL + ASF HV ++ E+ + N I L G
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVG 266
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G+
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 213
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
E + Y + ++ FSL + ASF HV ++ E+ + N I L G
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVG 266
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
MA+I+ +K+++ G+ GK+ L ++ D F + T+ +N+ + +VD + ++
Sbjct: 1 MAAIR---KKLVIVGDVACGKTCLLIVFSKDQF--PAVYVPTV-FENYVADIEVDGKQVE 54
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
+ LWDT G E Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 55 LALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 120 CGNNEQCHN 128
GN + N
Sbjct: 115 VGNKKDLRN 123
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
MA+I+ +K+++ G+ GK+ L ++ D F T+ +N+ + +VD + ++
Sbjct: 4 MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 57
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 58 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 117
Query: 120 CGNNEQCHN 128
GN + N
Sbjct: 118 VGNKKDLRN 126
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
MA+I+ +K+++ G+ GK+ L ++ D F T+ +N+ + +VD + ++
Sbjct: 1 MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 54
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 120 CGNNEQCHN 128
GN + N
Sbjct: 115 VGNKKDLRN 123
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
MA+I+ +K+++ G+ GK+ L ++ D F T+ +N+ + +VD + ++
Sbjct: 3 MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 56
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 57 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 116
Query: 120 CGNNEQCHN 128
GN + N
Sbjct: 117 VGNKKDLRN 125
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
MA+I+ +K+++ G+ GK+ L ++ D F T+ +N+ + +VD + ++
Sbjct: 3 MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 56
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 57 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 116
Query: 120 CGNNEQCHN 128
GN + N
Sbjct: 117 VGNKKDLRN 125
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
MA+I+ +K+++ G+ GK+ L ++ D F T+ +N+ + +VD + ++
Sbjct: 2 MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 55
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 56 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 115
Query: 120 CGNNEQCHN 128
GN + N
Sbjct: 116 VGNKKDLRN 124
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
MA+I+ +K+++ G+ GK+ L ++ D F T+ +N+ + +VD + ++
Sbjct: 3 MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 56
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 57 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 116
Query: 120 CGNNEQCHN 128
GN + N
Sbjct: 117 VGNKKDLRN 125
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K + G+ VGK+ L Y +TF + T+ DNF+ V+ ++ + LWDT G
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTV-FDNFSANVVVNGATVNLGLWDTAGQ 66
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLL-EIVTYAENAKIFLCG 121
E + Y+ A+ IL FSL + AS+ +S+ + E+ YA I L G
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVG 119
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K + G+ VGK+ + Y +TF + T+ DNF+ VD ++ + LWDT G
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTF--PTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQ 64
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
E + Y+ A+ +L FSL + AS+ ++ + L E+ YA I L G
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVG 117
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
+K+++ G+ GK+ L ++ D F T+ +N+ + +VD + +++ LWDT G
Sbjct: 10 KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYVADIEVDGKQVELALWDTAG 66
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCH 127
E + Y + ++ FS+D+ S ++ + E+ + N I L GN +
Sbjct: 67 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 126
Query: 128 N 128
N
Sbjct: 127 N 127
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
MA+I+ +K+++ G+ GK+ L ++ D F T+ +N+ + +VD + ++
Sbjct: 21 MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYIADIEVDGKQVE 74
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 134
Query: 120 CGNNE 124
GN +
Sbjct: 135 VGNKK 139
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K +L G+ VGK+SL Y + + + DNF+ VD R +++QL DT G
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGY---PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ 78
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLL-EIVTYAENAKIFLCGNN 123
+ + Y + +L FS+ + +SF +S+ + EI + A I L G
Sbjct: 79 DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQ 133
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
E + Y + +++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 117
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
MA+I+ +K+++ G+ GK+ L ++ D F T+ +N+ + +VD + ++
Sbjct: 21 MAAIR---KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTV-FENYIADIEVDGKQVE 74
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIIL 134
Query: 120 CGNNE 124
GN +
Sbjct: 135 VGNKK 139
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
E + Y + +++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 66 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 119
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
MA+I+ +K+++ G+ GK+ L + D F T+ +N+ + +VD + ++
Sbjct: 1 MAAIR---KKLVIVGDGACGKTCLLIVNSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 54
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 120 CGNNEQCHN 128
GN + N
Sbjct: 115 VGNKKDLRN 123
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
E + Y + +++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
MA+I+ +K+++ G+ GK+ L + D F +N+ + +VD + ++
Sbjct: 1 MAAIR---KKLVIVGDGACGKTCLLIVNSKDQFPEVYV---PTVFENYVADIEVDGKQVE 54
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 120 CGNNEQCHN 128
GN + N
Sbjct: 115 VGNKKDLRN 123
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + +++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
MA+I+ +K+++ G+ GK+ L + D F T+ +N+ + +VD + ++
Sbjct: 1 MAAIR---KKLVIVGDGACGKTCLLIVNSKDQF--PEVYVPTV-FENYVADIEVDGKQVE 54
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 120 CGNNEQCHN 128
GN + N
Sbjct: 115 VGNKKDLRN 123
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
+K+++ G+ GK+ L + D F T+ +N+ + +VD + +++ LWDT G
Sbjct: 9 KKLVIVGDGACGKTCLLIVNSKDQF--PEVYVPTV-FENYVADIEVDGKQVELALWDTAG 65
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCH 127
+E + Y + ++ FS+D+ S ++ + E+ + N I L GN +
Sbjct: 66 LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 125
Query: 128 N 128
N
Sbjct: 126 N 126
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G+
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 88
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
E + Y + ++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 142
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G+
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
E + Y + ++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 65 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 118
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E K+++ G GVGKS+L ++ F+ D++ K+ +VD + +++ DT
Sbjct: 5 EYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE---DSYRKQVEVDAQQCMLEILDTA 61
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
G E+ ++ Y K + LV+S+ ++F+ L +I V ++ + L GN
Sbjct: 62 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 121
Query: 123 --------NEQCHNLIS-----STYKTSCKTGEGVEEMFADIGRQL 155
EQ NL + ++S K+ V E+F D+ RQ+
Sbjct: 122 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN++ VD + + + LWDT G
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAF---SGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
E + Y + ++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 72 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 124
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E K+++ G GVGKS+L ++ F+ D++ K+ +VD + +++ DT
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE---DSYRKQVEVDCQQCMLEILDTA 59
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
G E+ ++ Y K + LV+S+ ++F+ L +I V E+ + L GN
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 123 --------NEQCHNLI-----SSTYKTSCKTGEGVEEMFADIGRQL 155
EQ NL + ++S K+ V E+F D+ RQ+
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
E + Y + ++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 142
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E K+++ G GVGKS+L ++ F+ D++ K+ +VD + +++ DT
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE---DSYRKQVEVDCQQCMLEILDTA 59
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
G E+ ++ Y K + LV+S+ ++F+ L +I V E+ + L GN
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 123 --------NEQCHNLI-----SSTYKTSCKTGEGVEEMFADIGRQL 155
EQ NL + ++S K+ V E+F D+ RQ+
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 24 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 80
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
E + Y + ++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 81 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 134
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 68
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
E + Y + ++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 69 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVG 121
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
E + Y + ++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
E + Y + ++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
+K+++ G+ GK+ L + D F T+ +N+ + +VD + +++ LWDT G
Sbjct: 4 KKLVIVGDGACGKTCLLIVNSKDQF--PEVYVPTV-FENYVADIEVDGKQVELALWDTAG 60
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCH 127
E + Y + ++ FS+D+ S ++ + E+ + N I L GN +
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 120
Query: 128 N 128
N
Sbjct: 121 N 121
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
+K+++ G+ GK+ L + D F T+ +N+ + +VD + +++ LWDT G
Sbjct: 4 KKLVIVGDGACGKTCLLIVNSKDQF--PEVYVPTV-FENYVADIEVDGKQVELALWDTAG 60
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCH 127
E + Y + ++ FS+D+ S ++ + E+ + N I L GN +
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 120
Query: 128 N 128
N
Sbjct: 121 N 121
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
E + Y + ++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E K+++ G GVGKS+L ++ F+ D++ K+ +VD + +++ DT
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE---DSYRKQVEVDAQQCMLEILDTA 59
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
G E+ ++ Y K + LV+S+ ++F+ L +I V ++ + L GN
Sbjct: 60 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 119
Query: 123 --------NEQCHNLIS-----STYKTSCKTGEGVEEMFADIGRQL 155
EQ NL + ++S K+ V E+F D+ RQ+
Sbjct: 120 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 3 SIKVPEQ----KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS 58
SI P Q K+++ G+ GK++L +A D F +N+ +++D +
Sbjct: 14 SIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQR 70
Query: 59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKI 117
I++ LWDT G ++ Y ++A ++ F + + VL + EI + N K+
Sbjct: 71 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM 130
Query: 118 FLCG 121
L G
Sbjct: 131 LLVG 134
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
E + Y + ++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
E + Y + ++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 115
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G+ GK++L +A D F +N+ +++D + I++ LWDT G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGS 86
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCG 121
++ Y ++A ++ F + + VL + EI + N K+ L G
Sbjct: 87 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVG 139
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
MA+I+ +K+++ G+ GK+ L + D F +N+ + +VD + ++
Sbjct: 1 MAAIR---KKLVIVGDGACGKTCLLIVNSKDQFPEVYV---PTVFENYIADIEVDGKQVE 54
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 119
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 120 CGNNE 124
GN +
Sbjct: 115 VGNKK 119
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G+ GK++L +A D F +N+ +++D + I++ LWDT G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCF---PENYVPTVFENYTASFEIDTQRIELSLWDTSGS 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCG 121
++ Y ++A ++ F + + VL + EI + N K+ L G
Sbjct: 66 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVG 118
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DTGG E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 22/153 (14%)
Query: 21 KSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY 80
KS+L ++ TFI T+ D + KE +VD +++ DT G E+ AS+ Y
Sbjct: 16 KSALTVQFVTGTFIEKYD--PTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYI 72
Query: 81 KFAEAAILVFSLDNAASFH---VLSQHLLEIVTYAENAKIFLCGNNEQCHNLISST---- 133
K + ILV+SL N SF + ++ + Y E + L GN + +
Sbjct: 73 KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSSSEG 131
Query: 134 -----------YKTSCKTGEGVEEMFADIGRQL 155
+TS K+ V+E+FA+I RQ+
Sbjct: 132 RALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 26/171 (15%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFIS--SSSRKSTLGLDNFNKEYKVDDRSIQMQ 62
K E K+ + G GVGKS+L R+ FI + +ST + + +DD + M+
Sbjct: 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLEST-----YRHQATIDDEVVSME 79
Query: 63 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLS-QHLLEIVTYAENAKIFLC 120
+ DT G E + ++ E +LV+ + + SF VL +++L+ + +N + L
Sbjct: 80 ILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV 138
Query: 121 GNNEQCHN---------------LISSTYKTSCKTGEG-VEEMFADIGRQL 155
GN + L + Y+ S TGEG + E+F ++ R++
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 11 KCVVVGDVAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FSL + AS+ +V ++ E+ + + I L G
Sbjct: 68 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 122
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 12 KCVVVGDVAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FSL + AS+ +V ++ E+ + + I L G
Sbjct: 69 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 123
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G+E +++ Y + E + VF+++N SF + Q+
Sbjct: 43 DSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 102
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 103 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 162
Query: 150 DIGRQL 155
+ R++
Sbjct: 163 TLVREI 168
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FSL + ASF +V ++ E+ + + I L G
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTK 117
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FSL + ASF +V ++ E+ + + I L G
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTK 117
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + DN++ VD + + + LWDT G
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAL---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN 122
E + Y + ++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 142
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FSL + ASF +V ++ E+ + + I L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTK 116
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
+K+++ G+ GK+ L ++ D F +N+ + +VD + +++ LWDT G
Sbjct: 26 KKLVVVGDGACGKTCLLIVFSKDEF---PEVYVPTVFENYVADIEVDGKQVELALWDTAG 82
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNE 124
E + Y + ++ FS+D+ S ++ + + E+ + N I L N +
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKK 139
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G+E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 58/199 (29%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLG------------------------- 44
K +L GE VGKSS+ R DTF +++ +T+G
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTN--TTIGASFCTYVVNLNDINIKNNSNNEKNN 66
Query: 45 ------------LDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSL 92
+ N + Y + +I+ +WDT G ER ASI YY+ A AI+VF +
Sbjct: 67 NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126
Query: 93 DNAASFHVLSQHLLEIVTYAENAKIFLCGNN----------------EQCHNLISSTYKT 136
N+ + ++ + + + N I L N Q +NL+ +T
Sbjct: 127 SNSNTLD-RAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLF--IQT 183
Query: 137 SCKTGEGVEEMFADIGRQL 155
S KTG ++ +F + ++
Sbjct: 184 SAKTGTNIKNIFYMLAEEI 202
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 45 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 104
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 105 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 164
Query: 150 DIGRQL 155
+ R++
Sbjct: 165 TLVREI 170
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G+E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 44 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 103
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 104 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 163
Query: 150 DIGRQL 155
+ R++
Sbjct: 164 TLVREI 169
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FSL + AS+ +V ++ E+ + + I L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 116
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 43 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 102
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 103 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 162
Query: 150 DIGRQL 155
+ R++
Sbjct: 163 TLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 43 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 102
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 103 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 162
Query: 150 DIGRQL 155
+ R++
Sbjct: 163 TLVREI 168
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G+E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N+ SF ++ +
Sbjct: 56 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYR 115
Query: 106 LEI--VTYAENAKIFLCGNN----------EQCHNLISST----YKTSCKTGEGVEEMFA 149
+I V +++ + L GN +Q H L S +TS KT +GVE+ F
Sbjct: 116 EQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY 175
Query: 150 DIGRQL 155
+ R++
Sbjct: 176 TLVREI 181
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNRCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L YA D F D++ V + + L+DT G
Sbjct: 20 KCVVVGDGAVGKTCLLMSYANDAF---PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ N ASF +V + + E+ YA N L G
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQ 131
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGG 68
K+++ G+ GK+SL +A +TF K T+GLD F + + + ++ +Q+WD GG
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETF--GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVL 101
+ Y A+ +LV+ + N SF L
Sbjct: 66 QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL 98
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R+
Sbjct: 158 TLVREF 163
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS--IQMQLWDTG 67
K+ L G+ GVGK++ R F + +T+G N + +DD+ I+ +WDT
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRF--EKNYNATVGAVNHPVTF-LDDQGNVIKFNVWDTA 69
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFLCGNNEQC 126
G E+ A + YY A AIL F + + + L++ + E N A I +C N
Sbjct: 70 GQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDI 129
Query: 127 HN 128
N
Sbjct: 130 KN 131
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + +
Sbjct: 39 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYR 98
Query: 106 LEI--VTYAENAKIFLCGNN----------EQCHNLISST----YKTSCKTGEGVEEMFA 149
+I V +E+ + L GN +Q +L S +TS KT +GV++ F
Sbjct: 99 EQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 158
Query: 150 DIGRQL 155
+ R++
Sbjct: 159 TLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + +
Sbjct: 39 DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYR 98
Query: 106 LEI--VTYAENAKIFLCGNN----------EQCHNLISST----YKTSCKTGEGVEEMFA 149
+I V +E+ + L GN +Q +L S +TS KT +GV++ F
Sbjct: 99 EQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 158
Query: 150 DIGRQL 155
+ R++
Sbjct: 159 TLVREI 164
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + DT G E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 26/142 (18%)
Query: 30 YDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89
YD I S RK + +D + + + DT G E +++ Y + E + V
Sbjct: 32 YDPTIEESYRKQVV----------IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81
Query: 90 FSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN----------NEQCHNLISS----T 133
F+++N SF + Q+ +I V +++ + L GN + Q +L S
Sbjct: 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPY 141
Query: 134 YKTSCKTGEGVEEMFADIGRQL 155
+TS KT +GVE+ F + R++
Sbjct: 142 IETSAKTRQGVEDAFYTLVREI 163
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT G E +++ Y + E + VF+++N SF + +
Sbjct: 56 DSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYR 115
Query: 106 LEI--VTYAENAKIFLCGNN----------EQCHNLISST----YKTSCKTGEGVEEMFA 149
+I V +E+ + L GN +Q +L S +TS KT +GV++ F
Sbjct: 116 EQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 175
Query: 150 DIGRQL 155
+ R++
Sbjct: 176 TLVREI 181
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G+ G GK+SL +A F S + + + +V + + + +WDT G
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV---FERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG 121
+ + +Y A +L F + + SF ++ ++ E+ + + I + G
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVG 145
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 32/169 (18%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
+K+++ G+ GK+ L + F T+ +N+ + +VD R +++ LWDT G
Sbjct: 11 RKLVIVGDGACGKTCLLIVNSKGQF--PEVYVPTV-FENYVADVEVDGRRVELALWDTAG 67
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCG------ 121
E + Y + ++ FS+D S +V + + E++ + + I L G
Sbjct: 68 QEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLR 127
Query: 122 NNEQ--------------------CHNLISST--YKTSCKTGEGVEEMF 148
N+ Q + I +T Y+ S KTG GV E+F
Sbjct: 128 NDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +D + + + DT E +++ Y + E + VF+++N SF + Q+
Sbjct: 38 DSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYR 97
Query: 106 LEI--VTYAENAKIFLCGN----------NEQCHNLISS----TYKTSCKTGEGVEEMFA 149
+I V +++ + L GN + Q +L S +TS KT +GVE+ F
Sbjct: 98 EQIKRVKDSDDVPMVLVGNKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157
Query: 150 DIGRQL 155
+ R++
Sbjct: 158 TLVREI 163
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
Query: 10 KVILCGEYGVGKSSLFRRYA--YDTFISSSSRKSTLGLDNFNKEYKVDDRS---IQMQLW 64
+V+L GE GVGKS+L +A +D+ S LG D + + VD S I + +W
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDC---EVLGEDTYERTLMVDGESATIILLDMW 95
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN 122
+ G + + +A ++V+S+ + ASF S+ +++ E+ I L GN
Sbjct: 96 ENKGENE--WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 153
Query: 123 NE---QCHNLISST------------YKTSCKTGEGVEEMFADIGRQLILSNRSR 162
+C + S +TS V+E+F I RQ+ L S+
Sbjct: 154 KSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 208
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G+ VGK+ L ++ ++ T+ +NF+ K + + LWDT G
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTV-FENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL-LEIVTYAENAKIFLCG 121
E + Y ++ +L F+++N SF +S EI Y + AK L G
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVG 134
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G+ VGK+ L ++ ++ T+ +NF+ K + + LWDT G
Sbjct: 24 KIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTV-FENFSHVMKYKNEEFILHLWDTAGQ 80
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL-LEIVTYAENAKIFLCG 121
E + Y ++ +L F+++N SF +S EI Y + AK L G
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVG 133
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS---IQMQLWDT 66
+V+L GE GVGKS+L +A S S LG D + + VD S I + +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFA-GVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 67 GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNNE 124
G + + +A ++V+S+ + ASF S+ +++ E+ I L GN
Sbjct: 67 KGENE--WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 125 ---QCHNLISST------------YKTSCKTGEGVEEMFADIGRQLIL 157
+C + S +TS V+E+F I RQ+ L
Sbjct: 125 DLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL 172
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 23/173 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS---IQMQLWDT 66
+V+L GE GVGKS+L +A S S LG D + + VD S I + +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFA-GVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 67 GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNNE 124
G + + +A ++V+S+ + ASF S+ +++ E+ I L GN
Sbjct: 67 KGEN--EWLHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 125 QCHNLISSTY---------------KTSCKTGEGVEEMFADIGRQLILSNRSR 162
+ +TS V+E+F I RQ+ L S+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 23/173 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS---IQMQLWDT 66
+V+L GE GVGKS+L +A S S LG D + + VD S I + +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFA-GVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 67 GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNNE 124
G + + +A ++V+S+ + ASF S+ +++ E+ I L GN
Sbjct: 67 KGEN--EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 125 QCHNLISSTY---------------KTSCKTGEGVEEMFADIGRQLILSNRSR 162
+ +TS V+E+F I RQ+ L S+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 3 SIKVPEQ-----KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR 57
S++ P+ K++L G+ GK+++ + A D + + T+ +N+ + +++
Sbjct: 1 SMRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTV-FENYTACLETEEQ 57
Query: 58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAK 116
+++ LWDT G ++ Y ++A +L F + + L + EI+ Y + +
Sbjct: 58 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR 117
Query: 117 IFLCG 121
+ L G
Sbjct: 118 VLLIG 122
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GK+++ + A D + + T+ +N+ + +++ +++ LWDT G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTV-FENYTACLETEEQRVELSLWDTSGS 85
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCG 121
++ Y ++A +L F + + L + EI+ Y + ++ L G
Sbjct: 86 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIG 138
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GK+++ + A D + + T+ +N+ + +++ +++ LWDT G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTV-FENYTACLETEEQRVELSLWDTSGS 68
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCG 121
++ Y ++A +L F + + L + EI+ Y + ++ L G
Sbjct: 69 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIG 121
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 23/134 (17%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 70 ERVASITSSYY-------------------KFAEAAILVFSLDNAASF-HVLSQHLLEIV 109
E + Y A+ ++ FSL + ASF +V ++ E+
Sbjct: 64 EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 110 TYAENAKIFLCGNN 123
+ N I L G
Sbjct: 124 HHCPNTPIILVGTK 137
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
+K+ + G VGKSSL ++ F+ S+ + F K V+ + +QL DT G
Sbjct: 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIE---NTFTKLITVNGQEYHLQLVDTAG 61
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ---HLLEIVTYAENAKIFLCGNNEQ 125
+ + +Y ILV+S+ + SF V+ LL++V + I L GN +
Sbjct: 62 QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IPIMLVGNKKD 120
Query: 126 CH 127
H
Sbjct: 121 LH 122
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
+K+ + G VGKSSL ++ F+ S + F K V+ + +QL DT G
Sbjct: 7 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE---NTFTKLITVNGQEYHLQLVDTAG 63
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ---HLLEIVTYAENAKIFLCGNNEQ 125
+ + +Y ILV+S+ + SF V+ LL++V + I L GN +
Sbjct: 64 QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IPIMLVGNKKD 122
Query: 126 CH 127
H
Sbjct: 123 LH 124
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
+K+ + G VGKSSL ++ F+ S + F K V+ + +QL DT G
Sbjct: 2 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE---NTFTKLITVNGQEYHLQLVDTAG 58
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ---HLLEIVTYAENAKIFLCGNNEQ 125
+ + +Y ILV+S+ + SF V+ LL++V + I L GN +
Sbjct: 59 QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IPIMLVGNKKD 117
Query: 126 CH 127
H
Sbjct: 118 LH 119
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
+K+ + G VGKSSL ++ F+ S + F K V+ + +QL DT G
Sbjct: 7 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE---NTFTKLITVNGQEYHLQLVDTAG 63
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ---HLLEIVTYAENAKIFLCGNNEQ 125
+ + +Y ILV+S+ + SF V+ LL++V + I L GN +
Sbjct: 64 QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IPIMLVGNKKD 122
Query: 126 CH 127
H
Sbjct: 123 LH 124
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G G GK+++ + I++ T+G FN E V ++I +WD G
Sbjct: 17 EMRILMVGLDGAGKTTVLYKLKLGEVITTIP---TIG---FNVE-TVQYKNISFTVWDVG 69
Query: 68 GMERVASITSSYYKFAEAAILVF 90
G +R+ S+ YY+ E I V
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFVI 92
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K+ +DDR+ ++ + DT G E ++ Y + E +LVFS+ + SF + +
Sbjct: 40 DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQ 99
Query: 106 LEIVTYAENAK--IFLCGNN 123
+I+ + + + L GN
Sbjct: 100 RQILRVKDRDEFPMILIGNK 119
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G G GK+++ + I++ T+G FN E V ++I +WD G
Sbjct: 17 EMRILMVGLDGAGKTTVLYKLKLGEVITTIP---TIG---FNVE-TVQYKNISFTVWDVG 69
Query: 68 GMERVASITSSYYKFAEAAILV 89
G +R+ S+ YY+ E I V
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFV 91
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
++++ G G GK+++ + I++ T+G + +YK +I +WD GG
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVITTIP---TIGFNVETVQYK----NISFTVWDVGGQ 54
Query: 70 ERVASITSSYYKFAEAAILV 89
+R+ S+ YY+ E I V
Sbjct: 55 DRIRSLWRHYYRNTEGVIFV 74
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G GK+S+ + +++ T+G + EYK +I +WD G
Sbjct: 17 EMRILMVGLDAAGKTSILYKLKLGEIVTTIP---TIGFNVETVEYK----NISFTVWDVG 69
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQ 125
G +++ + YY+ +A I V ++ + L++++ E NA + + N
Sbjct: 70 GQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 126 CHNLIS 131
+S
Sbjct: 130 LPQAMS 135
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 29/164 (17%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGL--DNFNKEYKVDDRSIQMQLWDTG 67
+V + G GVGKSSL R+ TF R+S + D + + D +Q+ DT
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTF-----RESYIPTVEDTYRQVISCDKSICTLQITDTT 59
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKIFLCGNNE 124
G + ++ A ILV+S+ + S L + + EI E+ I L GN
Sbjct: 60 GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN-- 117
Query: 125 QCH------------NLISSTYK-----TSCKTGEGVEEMFADI 151
+C ++ T+K TS K V+E+F ++
Sbjct: 118 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/126 (18%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
+ ++++ G GK+++ + +++ T+G + EYK +I +WD G
Sbjct: 17 QMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK----NICFTVWDVG 69
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQ 125
G +R+ + Y++ + I V ++ ++ L +++ E +A + L N +
Sbjct: 70 GQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQD 129
Query: 126 CHNLIS 131
N ++
Sbjct: 130 LPNAMA 135
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/127 (17%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G GK+++ + +++ T+G + EYK +I +WD G
Sbjct: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK----NISFTVWDVG 69
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQ 125
G +++ + Y++ + I V ++ + + L+ ++ E +A + + N +
Sbjct: 70 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 129
Query: 126 CHNLISS 132
N +++
Sbjct: 130 LPNAMNA 136
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/127 (17%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G GK+++ + +++ T+G + EYK +I +WD G
Sbjct: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK----NISFTVWDVG 68
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQ 125
G +++ + Y++ + I V ++ + + L+ ++ E +A + + N +
Sbjct: 69 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 128
Query: 126 CHNLISS 132
N +++
Sbjct: 129 LPNAMNA 135
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G G GK+++ + I++ T+G FN E V +I +WD G
Sbjct: 17 EMRILMVGLDGAGKTTVLYKLKLGEVITTIP---TIG---FNVEC-VQYCNISFTVWDVG 69
Query: 68 GMERVASITSSYYKFAEAAILV 89
G +R+ S+ YY E I V
Sbjct: 70 GQDRIRSLWRHYYCNTEGVIFV 91
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
++++ G GK+++ + +++ T+G FN E V+ R+I +WD GG
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVVTTIP---TIG---FNVE-TVEFRNISFTVWDVGGQ 71
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQCH 127
+++ + YY + I V ++ + L ++ E +A I + N +
Sbjct: 72 DKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLP 131
Query: 128 NLISS 132
N +S+
Sbjct: 132 NAMSA 136
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/127 (17%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G GK+++ + +++ T+G + EYK +I +WD G
Sbjct: 165 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK----NISFTVWDVG 217
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQ 125
G +++ + Y++ + I V ++ + + L+ ++ E +A + + N +
Sbjct: 218 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 277
Query: 126 CHNLISS 132
N +++
Sbjct: 278 LPNAMNA 284
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G+
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 120
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/125 (16%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
++++ G GK+++ + +++ T+G + EYK +I +WD GG+
Sbjct: 4 RILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK----NISFTVWDVGGL 56
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQCH 127
+++ + Y++ + I V ++ + + L+ ++ E +A + + N +
Sbjct: 57 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 116
Query: 128 NLISS 132
N +++
Sbjct: 117 NAMNA 121
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E KVI+ G GK+++ +++ + + +S T+G N E V + + + +WD G
Sbjct: 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSP---TIG---SNVEEIVINNT-RFLMWDIG 73
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK 116
G E + S ++YY E I+V + V + L +++ + + K
Sbjct: 74 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRK 122
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E KVI+ G GK+++ +++ + + +S T+G N E V + + + +WD G
Sbjct: 22 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSP---TIG---SNVEEIVINNT-RFLMWDIG 74
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK 116
G E + S ++YY E I+V + V + L +++ + + K
Sbjct: 75 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRK 123
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 27/159 (16%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G G GK+++ R +++ T+G FN E V ++++ Q+WD G
Sbjct: 4 EMRILILGLDGAGKTTILYRLQVGEVVTTIP---TIG---FNVE-TVTYKNLKFQVWDLG 56
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC--GNNEQ 125
G+ + YY +A I V + + L+ ++ E K L N +
Sbjct: 57 GLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQD 116
Query: 126 CHNLISST------------------YKTSCKTGEGVEE 146
++S+ +KTS G G++E
Sbjct: 117 MEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 155
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
+PE ++ + G+ GKSSL R+ ++ +S + + KE VD ++ + + +
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTES----EQYKKEMLVDGQTHLVLIRE 60
Query: 66 TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ 103
G + + + +A+A I VFSL++ SF +S+
Sbjct: 61 EAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSR 93
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E + + G G GKS+L ++ FIS D ++ E VD + + +++ DT
Sbjct: 21 EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLE---DTYSSEETVDHQPVHLRVMDTA 77
Query: 68 GMERVASITSSYYKFAEAAILVFSLD 93
++ Y +A A ++V+S+D
Sbjct: 78 DLD-TPRNCERYLNWAHAFLVVYSVD 102
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G+
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGL 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 19/101 (18%)
Query: 9 QKVILCGEYGVGKSSLFRRYA-------YDTFISSS-SRKSTLGLDNFNKEYKVDDRSIQ 60
+KV++ G VGK+SL ++ YD + ++ S+ TLG D F+
Sbjct: 25 RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFH----------- 73
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL 101
+ L DT G + + + S+ +LV+S+ + SF V+
Sbjct: 74 LHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI 114
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
+PE ++ + G+ GKSSL R+ ++ +S + + KE VD ++ + + +
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTES----EQYKKEMLVDGQTHLVLIRE 60
Query: 66 TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ 103
G + + + +A+A I VFSL++ SF +S+
Sbjct: 61 EAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSR 93
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G G GK+++ R +++ K T+G + YK ++++ +WD G
Sbjct: 18 ELRILILGLDGAGKTTILYRLQIGEVVTT---KPTIGFNVETLSYK----NLKLNVWDLG 70
Query: 68 GMERVASITSSYYKFAEAAILVFSLDN 94
G + YY A+ A ++F +D+
Sbjct: 71 GQTSIRPYWRCYY--ADTAAVIFVVDS 95
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E KVI+ G GK+++ +++ + + +S T+G N E V + + + +WD G
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSP---TIG---SNVEEIVINNT-RFLMWDIG 68
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK 116
G E + S ++YY E I+V + V + L +++ + + K
Sbjct: 69 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRK 117
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E KVI+ G GK+++ +++ + + +S T+G N E V + + + +WD G
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSP---TIG---SNVEEIVINNT-RFLMWDIG 68
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK 116
G E + S ++YY E I+V + V + L +++ + + K
Sbjct: 69 GQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRK 117
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
+V+L G+ GVGK+SL +A LG D + + VD + + DT
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGK---QERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 70 ERVASITS--SYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN 123
E++ S S + A ++V+S+ + SF S+ +++ A++ I L GN
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNK 120
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G G GK+++ R +++ T+G FN E V ++++ Q+WD G
Sbjct: 7 EXRILILGLDGAGKTTILYRLQVGEVVTTIP---TIG---FNVE-TVTYKNLKFQVWDLG 59
Query: 68 GMERVASITSSYYKFAEAAILV 89
G+ + YY +A I V
Sbjct: 60 GLTSIRPYWRCYYSNTDAVIYV 81
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G GK+++ + +++ T+G FN E V ++++ +WD G
Sbjct: 13 EMRILMLGLDAAGKTTILYKLKLGQSVTTIP---TVG---FNVE-TVTYKNVKFNVWDVG 65
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQ 125
G++++ + YY + I V + Q L I+ E +A I + N +
Sbjct: 66 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 125
Query: 126 CHN 128
+
Sbjct: 126 LPD 128
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 120
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G GK+++ + +++ T+G FN E V ++++ +WD G
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQSVTTIP---TVG---FNVE-TVTYKNVKFNVWDVG 54
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQ 125
G++++ + YY + I V + Q L I+ E +A I + N +
Sbjct: 55 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 114
Query: 126 CHN 128
+
Sbjct: 115 LPD 117
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E KVI+ G GK+++ ++ + + +S T+G N E ++ ++ +WD G
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFLMNEVVHTSP---TIG---SNVE-EIVVKNTHFLMWDIG 68
Query: 68 GMERVASITSSYYKFAEAAILV 89
G E + S ++YY E ILV
Sbjct: 69 GQESLRSSWNTYYSNTEFIILV 90
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E +++L G GK++L ++ A + S T G FN + V + ++ +WD G
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQG---FNIK-SVQSQGFKLNVWDIG 56
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNA 95
G+ ++ SY F IL++ +D+A
Sbjct: 57 GLRKIRPYWRSY--FENTDILIYVIDSA 82
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G GK+++ + +++ T+G FN E V ++++ +WD G
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQSVTTIP---TVG---FNVE-TVTYKNVKFNVWDVG 55
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQ 125
G++++ + YY + I V + Q L I+ E +A I + N +
Sbjct: 56 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 115
Query: 126 CHN 128
+
Sbjct: 116 LPD 118
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/125 (16%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
++++ G GK+++ + +++ T+G + EYK +I +WD GG
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK----NISFTVWDVGGQ 54
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQCH 127
+++ + Y++ + I V ++ + + L+ ++ E +A + + N +
Sbjct: 55 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114
Query: 128 NLISS 132
N +++
Sbjct: 115 NAMNA 119
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 65 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 119
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 64 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 118
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 71
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 72 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 126
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 12 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 68
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 69 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 123
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 65 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 119
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 64 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 118
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 2 ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKE------YKVD 55
A + + E KV L G+ GK+SL ++ +TF S+ T GL+ K+ + D
Sbjct: 35 ALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQ--THGLNVVTKQAPNIKGLEND 92
Query: 56 D--RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE 113
D + WD GG E + + + + +L+ ++ H +H I Y
Sbjct: 93 DELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRH---IEKYGG 149
Query: 114 NAKIFLCGN---------------NEQCHNLISSTYKTSCKTGEGVE 145
+ + + N NE+ + + ++ SCK G+GVE
Sbjct: 150 KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVE 196
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 62
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 63 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 117
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 68
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 69 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 123
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L+DT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G G GK+++ R +++ T+G FN E V ++++ Q+WD G
Sbjct: 2 EMRILILGLDGAGKTTILYRLQVGEVVTTIP---TIG---FNVE-TVTYKNLKFQVWDLG 54
Query: 68 GMERVASITSSYYKFAEAAILV 89
G + YY +A I V
Sbjct: 55 GQTSIRPYWRCYYSNTDAVIYV 76
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 7 PEQ--KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
P+Q +++L G GK++L ++ A + S T G FN + V + ++ +W
Sbjct: 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQG---FNIK-SVQSQGFKLNVW 65
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNA 95
D GG ++ SY F IL++ +D+A
Sbjct: 66 DIGGQRKIRPYWRSY--FENTDILIYVIDSA 94
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQH 104
D++ K ++D++ + + DT G E +++ Y + + ++V+S+ + ASF HV H
Sbjct: 53 DSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFH 112
Query: 105 LLEI-VTYAENAKIFLCGNNEQCHNL 129
L + V E+ + L N +L
Sbjct: 113 QLILRVKDRESFPMILVANKVDLMHL 138
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G GK+++ + +++ T+G FN E V ++++ +WD G
Sbjct: 13 EMRILMLGLDAAGKTTILYKLKLGQSVTTIP---TVG---FNVE-TVTYKNVKFNVWDVG 65
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQ 125
G +++ + YY + I V + Q L I+ E +A I + N +
Sbjct: 66 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 125
Query: 126 CHNLISS 132
+ +
Sbjct: 126 LPDAMKP 132
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G GK+++ + +++ T+G FN E V ++++ +WD G
Sbjct: 12 EMRILMLGLDAAGKTTILYKLKLGQSVTTIP---TVG---FNVE-TVTYKNVKFNVWDVG 64
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQ 125
G +++ + YY + I V + Q L I+ E +A I + N +
Sbjct: 65 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 124
Query: 126 CHNLISS 132
+ +
Sbjct: 125 LPDAMKP 131
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
Length = 189
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 7 PEQ--KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
P+Q +++L G GK++L ++ A + S T G FN + V + ++ +W
Sbjct: 14 PDQEVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQG---FNIK-SVQSQGFKLNVW 66
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNA 95
D GG ++ SY F IL++ +D+A
Sbjct: 67 DIGGQRKIRPYWRSY--FENTDILIYVIDSA 95
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G GK+++ + +++ T+G + EYK +I +WD G
Sbjct: 20 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK----NISFTVWDVG 72
Query: 68 GMERVASITSSYYKFAEAAILV 89
G +++ + Y++ + I V
Sbjct: 73 GQDKIRPLWRHYFQNTQGLIFV 94
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E +++L G GK++L ++ A + S T G FN + V + ++ +WD G
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDI---SHITPTQG---FNIK-SVQSQGFKLNVWDIG 56
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNA 95
G ++ SY F IL++ +D+A
Sbjct: 57 GQRKIRPYWRSY--FENTDILIYVIDSA 82
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G GK+++ + +++ T+G FN E V ++++ +WD G
Sbjct: 322 EMRILMLGLDAAGKTTILYKLKLGQSVTTIP---TVG---FNVE-TVTYKNVKFNVWDVG 374
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNE 124
G +++ + YY + I V + Q L I+ E +A I + N +
Sbjct: 375 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 433
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL 105
D++ K VD ++ + DT G E ++ Y + +LVF++++ SF+ + +
Sbjct: 44 DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLF 103
Query: 106 LEI--VTYAENAKIFLCGNN 123
+I V ++ + L GN
Sbjct: 104 TQILRVKDRDDFPVVLVGNK 123
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F S DN+ + + L DT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKF---PSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQH 104
D++ K ++D++ + + DT G E +++ Y + + ++V+S+ + ASF HV H
Sbjct: 53 DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFH 112
Query: 105 LLEI-VTYAENAKIFLCGNNEQCHNL 129
L + V E+ + L N +L
Sbjct: 113 QLILRVKDRESFPMILVANKVDLMHL 138
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQH 104
D++ K ++D++ + + DT G E +++ Y + + ++V+S+ + ASF HV H
Sbjct: 53 DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFH 112
Query: 105 LLEI-VTYAENAKIFLCGNNEQCHNL 129
L + V E+ + L N +L
Sbjct: 113 QLILRVKDRESFPMILVANKVDLMHL 138
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + S DN+ + + L+DT G
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKL---PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNN 123
E + Y + ++ FS+ + +SF +V + + EI + L G
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 46 DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQH 104
D++ K ++D++ + + DT G E +++ Y + + ++V+S+ + ASF HV H
Sbjct: 48 DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFH 107
Query: 105 LLEI-VTYAENAKIFLCGNNEQCHNL 129
L + V E+ + L N +L
Sbjct: 108 QLILRVKDRESFPMILVANKVDLMHL 133
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
++++ G GK+++ + +++ T+G FN E V ++++ +WD GG
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTIP---TVG---FNVE-TVTYKNVKFNVWDVGGQ 54
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQCH 127
+++ + YY + I V + Q L I+ E +A I + N +
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 114
Query: 128 NLISS 132
+ +
Sbjct: 115 DAMKP 119
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
++++ G GK+++ + +++ T+G FN E V ++++ +WD GG
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTIP---TVG---FNVE-TVTYKNVKFNVWDVGGQ 54
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQCH 127
+++ + YY + I V + Q L I+ E +A I + N +
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 114
Query: 128 NLISS 132
+ +
Sbjct: 115 DAMKP 119
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/123 (17%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
+ ++++ G GK+++ + +++ T+G + EYK +I +WD G
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK----NICFTVWDVG 81
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNNEQ 125
G +++ + Y++ + I V ++ + L +++ E +A + + N +
Sbjct: 82 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD 141
Query: 126 CHN 128
N
Sbjct: 142 MPN 144
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 66/170 (38%), Gaps = 21/170 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G GVGKS+L R + + G +++ VD + ++D
Sbjct: 9 KVLLLGAPGVGKSALARIFG---GVEDGPEAEAAG-HTYDRSIVVDGEEASLMVYDIWEQ 64
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNNEQ-- 125
+ + +A ++V+S+ + SF S+ +++ ++ I L GN
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 126 ------------CHNLISSTY-KTSCKTGEGVEEMFADIGRQLILSNRSR 162
C + + +TS V+ +F + RQ+ L S+
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 174
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 41 STLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHV 100
+T+ FN E V ++++ +WD GG +++ + YY + I V +
Sbjct: 27 TTIPTVGFNVE-TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDE 85
Query: 101 LSQHLLEIVTYAE--NAKIFLCGNNE 124
Q L I+ E +A I + N +
Sbjct: 86 ARQELHRIINDREXRDAIILIFANKQ 111
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 66/170 (38%), Gaps = 21/170 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G GVGKS+L R + + G +++ VD + ++D
Sbjct: 9 KVLLLGAPGVGKSALARIFG---GVEDGPEAEAAG-HTYDRSIVVDGEEASLMVYDIWEQ 64
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNNEQ-- 125
+ + +A ++V+S+ + SF S+ +++ ++ I L GN
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 126 ------------CHNLISSTY-KTSCKTGEGVEEMFADIGRQLILSNRSR 162
C + + +TS V+ +F + RQ+ L S+
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 174
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
K E ++++ G GK+++ +++ + + S TLG FN + ++ R ++ +W
Sbjct: 13 KERELRLLMLGLDNAGKTTILKKFNGEDIDTISP---TLG---FNIK-TLEHRGFKLNIW 65
Query: 65 DTGGMERVASITSSYYKFAEAAILV 89
D GG + + S +Y++ + I V
Sbjct: 66 DVGGQKSLRSYWRNYFESTDGLIWV 90
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G GVGKS+L R + + G +++ VD + ++D
Sbjct: 4 KVLLLGAPGVGKSALARIFG---GVEDGPEAEAAG-HTYDRSIVVDGEEASLMVYDIWEQ 59
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNN 123
+ + +A ++V+S+ + SF S+ +++ ++ I L GN
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 115
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
K E ++++ G GK+++ +++ + + S TLG FN + ++ R ++ +W
Sbjct: 15 KERELRLLMLGLDNAGKTTILKKFNGEDVDTISP---TLG---FNIK-TLEHRGFKLNIW 67
Query: 65 DTGGMERVASITSSYYKFAEAAILV 89
D GG + + S +Y++ + I V
Sbjct: 68 DVGGQKSLRSYWRNYFESTDGLIWV 92
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
K E ++++ G GK+++ +++ + + S TLG FN + ++ R ++ +W
Sbjct: 15 KERELRLLMLGLDNAGKTTILKKFNGEDVDTISP---TLG---FNIK-TLEHRGFKLNIW 67
Query: 65 DTGGMERVASITSSYYKFAEAAILV 89
D GG + + S +Y++ + I V
Sbjct: 68 DVGGQKSLRSYWRNYFESTDGLIWV 92
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
++++ G GK+++ +++ + + S TLG FN + ++ R ++ +WD GG+
Sbjct: 3 RLLMLGLDNAGKTTILKKFNGEDVDTISP---TLG---FNIK-TLEHRGFKLNIWDVGGL 55
Query: 70 ERVASITSSYYKFAEAAILV 89
+ + S +Y++ + I V
Sbjct: 56 KSLRSYWRNYFESTDGLIWV 75
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD---RSIQMQLWDT 66
K+ + G G GK++L ++ + +T+G+D + ++ D R + + +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 67 GGMERVASITSSYYKFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNN 123
G E S + + V+ L A L I A ++ + L G +
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTH 119
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 24/165 (14%)
Query: 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68
KV++ G VGKSSLF R S+ G+ KE V+ + L DTGG
Sbjct: 2 HKVVIVGRPNVGKSSLFNRLLKK---RSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGG 58
Query: 69 M----ERVASITSSYYK-FAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFLCG 121
+ + I + +A +++F++D A L+Q E+ Y + + L
Sbjct: 59 LWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAE---LTQADYEVAEYLRRKGKPVILVA 115
Query: 122 N--NEQCHNL---------ISSTYKTSCKTGEGVEEMFADIGRQL 155
++ H L TS + G+EE+ I +L
Sbjct: 116 TKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERL 160
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD---RSIQMQLWDT 66
K+ + G G GK++L ++ + +T+G+D + ++ D R + + +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 67 GGMERVASITSSYYKFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNN 123
G E S + + V+ L A L I A ++ + L G +
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTH 121
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSR-----KSTLGLDNFNKEYKVDDR--SIQMQ 62
KV + GE VGKS+L F S S+ T G++ + D S+++
Sbjct: 22 KVAVVGEATVGKSALIS-----MFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELF 76
Query: 63 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH 99
L DT G + S Y+ AILVF + + SF
Sbjct: 77 LLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFE 113
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 31/170 (18%)
Query: 21 KSSLFRRYA----YDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASIT 76
KSSL R+ DT+I + D + + D +Q+ DT G + ++
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIE-------DTYRQVISCDKSVCTLQITDTTGSHQFPAMQ 73
Query: 77 SSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKIFLCGN---------NE 124
A ILVFS+ + S L + +++I E+ + L GN +
Sbjct: 74 RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDT 133
Query: 125 QCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLILSNRSRLELQTMG 169
+ ++ +K TS K V+E+F ++ L L R + L G
Sbjct: 134 REAQAVAQEWKCAFMETSAKMNYNVKELFQEL---LTLETRRNMSLNIDG 180
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++ L G GK++ A F S T+G FN KV ++ +++WD G
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQF--SEDMIPTVG---FNMR-KVTKGNVTIKIWDIG 75
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNA 95
G R S+ Y + A +V+ +D A
Sbjct: 76 GQPRFRSMWERYCRGVNA--IVYMIDAA 101
>pdb|2FEL|A Chain A, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|B Chain B, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|D Chain D, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|C Chain C, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|E Chain E, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|F Chain F, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|G Chain G, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|H Chain H, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|I Chain I, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|J Chain J, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|L Chain L, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|K Chain K, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|A Chain A, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|B Chain B, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|D Chain D, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|C Chain C, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|E Chain E, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|F Chain F, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|H Chain H, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|G Chain G, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|I Chain I, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|J Chain J, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|L Chain L, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|K Chain K, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
Length = 359
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 80 YKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCHNLISSTYKTSC 138
Y +AAI + D AA + L +HLL + T+A+N G T
Sbjct: 153 YTRMQAAIGITVADRAAGWIAPLERHLLRLETFAQNGFALQFGG----------AAGTLE 202
Query: 139 KTGEGVEEMFADIGRQLILSNRSRLELQTMG 169
K G+ + AD+ ++L L++R + Q G
Sbjct: 203 KLGDNAGAVRADLAKRLGLADRPQWHNQRDG 233
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 53 KVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA 95
K+ ++ ++LWD GG R S+ Y + A +V+ +D A
Sbjct: 61 KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSA--IVYMVDAA 101
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 20 GKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSY 79
GK+++ +++ + + S TLG + E+ R ++ +WD GG + + S +Y
Sbjct: 30 GKTTILKKFNGEDVDTISP---TLGFNIKTLEH----RGFKLNIWDVGGQKSLRSYWRNY 82
Query: 80 YKFAEAAILV 89
++ + I V
Sbjct: 83 FESTDGLIWV 92
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 53 KVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA 95
K+ ++ ++LWD GG R S+ Y + A +V+ +D A
Sbjct: 70 KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSA--IVYMVDAA 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,269,786
Number of Sequences: 62578
Number of extensions: 194156
Number of successful extensions: 941
Number of sequences better than 100.0: 341
Number of HSP's better than 100.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 342
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)