Query psy17231
Match_columns 189
No_of_seqs 132 out of 1460
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 16:41:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 4.6E-39 1E-43 225.7 17.7 160 2-163 3-179 (205)
2 KOG0092|consensus 100.0 3.8E-37 8.3E-42 215.2 16.5 155 5-161 2-172 (200)
3 KOG0078|consensus 100.0 2.9E-35 6.4E-40 209.2 19.3 155 6-162 10-180 (207)
4 KOG0394|consensus 100.0 9.1E-36 2E-40 206.6 15.8 159 1-161 1-183 (210)
5 KOG0094|consensus 100.0 1.7E-35 3.6E-40 207.2 15.8 154 5-160 19-189 (221)
6 cd04121 Rab40 Rab40 subfamily. 100.0 1.4E-34 3E-39 210.0 20.0 152 7-160 5-171 (189)
7 cd04120 Rab12 Rab12 subfamily. 100.0 1.5E-34 3.2E-39 211.7 19.6 149 9-159 1-166 (202)
8 KOG0098|consensus 100.0 8.7E-35 1.9E-39 202.1 15.8 157 5-163 3-175 (216)
9 cd01875 RhoG RhoG subfamily. 100.0 9.9E-34 2.1E-38 206.3 19.5 150 6-158 1-179 (191)
10 cd04133 Rop_like Rop subfamily 100.0 9.8E-34 2.1E-38 203.4 18.9 145 9-156 2-173 (176)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 9.2E-34 2E-38 204.7 18.9 150 5-157 2-181 (182)
12 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 7.4E-33 1.6E-37 203.2 21.5 156 9-166 1-178 (201)
13 KOG0087|consensus 100.0 1.2E-33 2.7E-38 200.3 16.0 155 6-162 12-182 (222)
14 cd04131 Rnd Rnd subfamily. Th 100.0 3.8E-33 8.3E-38 200.9 18.6 146 8-156 1-176 (178)
15 KOG0080|consensus 100.0 1.7E-33 3.6E-38 191.4 15.6 153 6-160 9-178 (209)
16 PLN03071 GTP-binding nuclear p 100.0 6E-33 1.3E-37 206.1 19.9 152 5-158 10-174 (219)
17 KOG0093|consensus 100.0 9.7E-34 2.1E-38 189.8 13.7 156 7-164 20-191 (193)
18 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.1E-32 2.3E-37 205.3 20.3 152 6-160 11-192 (232)
19 cd04122 Rab14 Rab14 subfamily. 100.0 1.2E-32 2.7E-37 196.2 19.6 148 8-157 2-165 (166)
20 KOG0079|consensus 100.0 7.9E-34 1.7E-38 190.5 12.2 152 6-159 6-172 (198)
21 KOG0086|consensus 100.0 2.9E-33 6.3E-38 188.8 14.3 154 6-161 7-176 (214)
22 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.9E-32 4E-37 196.5 19.3 149 8-159 2-167 (172)
23 cd00877 Ran Ran (Ras-related n 100.0 4.2E-32 9.1E-37 193.6 20.1 147 9-157 1-160 (166)
24 PTZ00369 Ras-like protein; Pro 100.0 4.4E-32 9.5E-37 197.3 20.5 154 5-161 2-172 (189)
25 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.8E-32 6E-37 196.1 18.5 144 9-155 2-174 (175)
26 cd01865 Rab3 Rab3 subfamily. 100.0 4.9E-32 1.1E-36 192.9 19.6 147 9-157 2-164 (165)
27 cd01867 Rab8_Rab10_Rab13_like 100.0 7.2E-32 1.6E-36 192.4 19.7 149 7-157 2-166 (167)
28 cd04110 Rab35 Rab35 subfamily. 100.0 9.8E-32 2.1E-36 197.0 20.8 154 7-162 5-173 (199)
29 cd04128 Spg1 Spg1p. Spg1p (se 100.0 6.6E-32 1.4E-36 195.2 19.6 148 9-159 1-169 (182)
30 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 5.8E-32 1.3E-36 200.4 19.6 151 8-161 1-181 (222)
31 cd04117 Rab15 Rab15 subfamily. 100.0 6.2E-32 1.3E-36 191.8 18.7 144 9-154 1-160 (161)
32 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.6E-31 3.4E-36 190.3 19.7 148 8-157 2-165 (166)
33 cd04127 Rab27A Rab27a subfamil 100.0 1.2E-31 2.5E-36 193.4 19.1 150 7-158 3-179 (180)
34 cd04124 RabL2 RabL2 subfamily. 100.0 1.4E-31 3E-36 189.9 19.1 148 9-158 1-160 (161)
35 cd01871 Rac1_like Rac1-like su 100.0 8.8E-32 1.9E-36 193.3 18.1 144 8-154 1-173 (174)
36 cd04134 Rho3 Rho3 subfamily. 100.0 9.6E-32 2.1E-36 195.5 18.3 148 9-159 1-177 (189)
37 PF00071 Ras: Ras family; Int 100.0 2.3E-31 4.9E-36 188.7 19.2 145 10-156 1-161 (162)
38 cd04136 Rap_like Rap-like subf 100.0 1.7E-31 3.7E-36 189.4 18.5 145 8-155 1-162 (163)
39 cd04119 RJL RJL (RabJ-Like) su 100.0 2.2E-31 4.9E-36 189.3 18.9 146 9-156 1-167 (168)
40 cd01864 Rab19 Rab19 subfamily. 100.0 2.4E-31 5.2E-36 189.3 18.7 146 7-154 2-164 (165)
41 cd04175 Rap1 Rap1 subgroup. T 100.0 2.5E-31 5.4E-36 189.0 18.7 146 8-156 1-163 (164)
42 smart00176 RAN Ran (Ras-relate 100.0 2E-31 4.4E-36 194.9 18.5 143 14-158 1-156 (200)
43 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.7E-31 8.1E-36 189.4 19.5 146 10-157 2-166 (170)
44 cd04109 Rab28 Rab28 subfamily. 100.0 3.2E-31 6.9E-36 196.5 19.3 148 9-158 1-168 (215)
45 PLN03110 Rab GTPase; Provision 100.0 9.8E-31 2.1E-35 193.9 21.4 152 7-160 11-178 (216)
46 PLN03108 Rab family protein; P 100.0 1.3E-30 2.9E-35 192.4 21.1 152 7-160 5-172 (210)
47 cd01868 Rab11_like Rab11-like. 100.0 8.2E-31 1.8E-35 186.4 19.2 146 8-155 3-164 (165)
48 cd04125 RabA_like RabA-like su 100.0 9E-31 2E-35 190.2 19.8 149 9-159 1-165 (188)
49 cd04113 Rab4 Rab4 subfamily. 100.0 6.2E-31 1.3E-35 186.3 18.4 144 9-154 1-160 (161)
50 cd04111 Rab39 Rab39 subfamily. 100.0 8E-31 1.7E-35 193.7 19.7 152 7-160 1-170 (211)
51 KOG0095|consensus 100.0 1.3E-31 2.8E-36 180.3 13.9 151 8-160 7-173 (213)
52 cd04176 Rap2 Rap2 subgroup. T 100.0 8.3E-31 1.8E-35 186.0 18.6 145 8-155 1-162 (163)
53 cd01866 Rab2 Rab2 subfamily. 100.0 1.3E-30 2.9E-35 186.1 19.7 148 8-157 4-167 (168)
54 cd04132 Rho4_like Rho4-like su 100.0 8.5E-31 1.8E-35 190.1 19.0 151 9-162 1-173 (187)
55 cd04126 Rab20 Rab20 subfamily. 100.0 1.4E-30 3.1E-35 192.8 20.4 146 9-161 1-195 (220)
56 cd04116 Rab9 Rab9 subfamily. 100.0 9.1E-31 2E-35 187.1 18.8 148 5-154 2-169 (170)
57 cd04106 Rab23_lke Rab23-like s 100.0 9.9E-31 2.1E-35 185.3 18.6 144 9-154 1-161 (162)
58 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.3E-30 2.8E-35 184.4 18.9 145 8-155 1-161 (162)
59 cd04144 Ras2 Ras2 subfamily. 100.0 9.3E-31 2E-35 190.5 18.3 148 10-160 1-167 (190)
60 smart00174 RHO Rho (Ras homolo 100.0 1E-30 2.3E-35 187.4 18.1 144 11-157 1-173 (174)
61 smart00173 RAS Ras subfamily o 100.0 1.7E-30 3.8E-35 184.5 18.9 145 9-156 1-162 (164)
62 cd04112 Rab26 Rab26 subfamily. 100.0 1.9E-30 4.2E-35 189.0 18.8 152 9-161 1-168 (191)
63 cd04118 Rab24 Rab24 subfamily. 100.0 3.8E-30 8.2E-35 187.6 20.0 150 9-159 1-169 (193)
64 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3.5E-30 7.5E-35 184.3 19.2 146 8-155 2-168 (170)
65 cd04140 ARHI_like ARHI subfami 100.0 3E-30 6.6E-35 183.7 18.8 142 9-153 2-162 (165)
66 cd04145 M_R_Ras_like M-Ras/R-R 100.0 4.1E-30 8.9E-35 182.4 19.4 146 7-155 1-163 (164)
67 cd04142 RRP22 RRP22 subfamily. 100.0 4.4E-30 9.6E-35 187.9 18.9 151 9-161 1-179 (198)
68 smart00175 RAB Rab subfamily o 100.0 9.4E-30 2E-34 180.5 19.3 147 9-157 1-163 (164)
69 cd01862 Rab7 Rab7 subfamily. 100.0 1.3E-29 2.9E-34 181.1 19.5 149 9-159 1-170 (172)
70 cd01861 Rab6 Rab6 subfamily. 100.0 9.3E-30 2E-34 180.2 18.4 144 9-154 1-160 (161)
71 cd01860 Rab5_related Rab5-rela 100.0 1.4E-29 3E-34 179.6 19.3 146 8-155 1-162 (163)
72 cd04130 Wrch_1 Wrch-1 subfamil 100.0 8.8E-30 1.9E-34 182.7 18.1 142 9-153 1-171 (173)
73 cd04177 RSR1 RSR1 subgroup. R 100.0 1.6E-29 3.4E-34 180.5 19.3 146 8-156 1-164 (168)
74 cd01873 RhoBTB RhoBTB subfamil 100.0 5.9E-30 1.3E-34 186.7 17.4 145 8-154 2-194 (195)
75 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.7E-29 3.7E-34 179.4 18.8 145 9-155 1-163 (164)
76 cd04143 Rhes_like Rhes_like su 100.0 1.5E-29 3.2E-34 190.6 18.6 144 9-155 1-170 (247)
77 cd04135 Tc10 TC10 subfamily. 100.0 2E-29 4.3E-34 180.8 18.3 144 9-155 1-173 (174)
78 cd04149 Arf6 Arf6 subfamily. 100.0 7.9E-30 1.7E-34 182.2 16.1 141 6-153 7-167 (168)
79 cd01870 RhoA_like RhoA-like su 100.0 2.3E-29 5E-34 180.6 18.3 145 8-155 1-174 (175)
80 cd04103 Centaurin_gamma Centau 100.0 2.4E-29 5.2E-34 177.9 18.1 137 9-154 1-157 (158)
81 smart00177 ARF ARF-like small 100.0 1.4E-29 3.1E-34 182.0 17.2 144 6-156 11-174 (175)
82 cd01892 Miro2 Miro2 subfamily. 100.0 2.7E-29 5.9E-34 179.6 18.1 149 6-157 2-167 (169)
83 PLN03118 Rab family protein; P 100.0 1.1E-28 2.4E-33 182.4 21.8 151 6-159 12-180 (211)
84 cd01863 Rab18 Rab18 subfamily. 100.0 4.8E-29 1E-33 176.6 18.7 144 9-154 1-160 (161)
85 PLN00223 ADP-ribosylation fact 100.0 2.2E-29 4.7E-34 181.9 16.8 146 6-158 15-180 (181)
86 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3.2E-29 7E-34 177.5 16.1 138 9-153 1-158 (159)
87 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 9E-29 1.9E-33 179.0 18.4 152 7-161 2-175 (183)
88 PTZ00132 GTP-binding nuclear p 100.0 2.2E-28 4.8E-33 181.2 20.8 152 5-158 6-170 (215)
89 cd04123 Rab21 Rab21 subfamily. 100.0 1.7E-28 3.7E-33 173.5 19.2 145 9-155 1-161 (162)
90 KOG0088|consensus 100.0 6.7E-30 1.5E-34 173.5 11.2 156 4-161 9-180 (218)
91 cd04114 Rab30 Rab30 subfamily. 100.0 1.8E-28 4E-33 174.9 19.3 148 6-155 5-168 (169)
92 KOG0081|consensus 100.0 1.1E-30 2.5E-35 177.3 7.4 163 6-170 7-195 (219)
93 cd04148 RGK RGK subfamily. Th 100.0 1.3E-28 2.8E-33 183.1 18.9 149 9-161 1-168 (221)
94 PTZ00133 ADP-ribosylation fact 100.0 8.7E-29 1.9E-33 178.9 17.5 146 6-158 15-180 (182)
95 cd04129 Rho2 Rho2 subfamily. 100.0 2.1E-28 4.6E-33 177.7 19.0 150 8-160 1-177 (187)
96 cd04146 RERG_RasL11_like RERG/ 100.0 1.4E-28 3E-33 175.0 17.3 144 10-156 1-164 (165)
97 KOG0091|consensus 100.0 2E-29 4.4E-34 171.9 12.2 154 6-161 6-178 (213)
98 cd04158 ARD1 ARD1 subfamily. 100.0 1.8E-28 3.8E-33 175.3 16.9 142 10-158 1-163 (169)
99 cd04139 RalA_RalB RalA/RalB su 100.0 6.6E-28 1.4E-32 170.9 18.9 145 9-156 1-162 (164)
100 KOG0097|consensus 100.0 1.9E-28 4.1E-33 163.7 14.4 153 6-160 9-177 (215)
101 cd01893 Miro1 Miro1 subfamily. 100.0 4.4E-28 9.6E-33 172.7 17.4 145 9-157 1-165 (166)
102 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.2E-28 4.7E-33 174.1 14.9 137 11-153 2-163 (164)
103 cd04147 Ras_dva Ras-dva subfam 100.0 1E-27 2.2E-32 175.6 18.4 146 10-158 1-165 (198)
104 cd04154 Arl2 Arl2 subfamily. 100.0 4.7E-28 1E-32 173.7 16.2 142 5-153 11-172 (173)
105 cd00154 Rab Rab family. Rab G 100.0 1.4E-27 3.1E-32 167.7 18.0 142 9-152 1-158 (159)
106 cd00157 Rho Rho (Ras homology) 100.0 2.3E-27 4.9E-32 169.4 18.4 142 9-153 1-170 (171)
107 KOG0083|consensus 100.0 8.8E-30 1.9E-34 168.4 5.0 147 12-159 1-163 (192)
108 cd04157 Arl6 Arl6 subfamily. 100.0 8.2E-28 1.8E-32 170.3 14.8 139 10-153 1-161 (162)
109 KOG0395|consensus 100.0 1.9E-27 4.1E-32 172.9 16.6 151 7-160 2-169 (196)
110 KOG0393|consensus 100.0 1.2E-28 2.6E-33 176.1 9.8 152 6-160 2-183 (198)
111 cd00876 Ras Ras family. The R 100.0 3.5E-27 7.5E-32 166.4 17.2 142 10-154 1-159 (160)
112 cd04137 RheB Rheb (Ras Homolog 100.0 8.2E-27 1.8E-31 168.2 18.6 148 9-159 2-166 (180)
113 cd04156 ARLTS1 ARLTS1 subfamil 100.0 4.1E-27 8.9E-32 166.5 15.7 138 10-153 1-159 (160)
114 cd04161 Arl2l1_Arl13_like Arl2 100.0 3.3E-27 7.2E-32 168.4 15.2 137 10-153 1-166 (167)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 5E-27 1.1E-31 168.6 15.9 140 7-153 14-173 (174)
116 PF00025 Arf: ADP-ribosylation 100.0 8.6E-27 1.9E-31 167.5 15.7 144 5-155 11-175 (175)
117 cd04151 Arl1 Arl1 subfamily. 99.9 1.2E-26 2.6E-31 164.0 15.7 137 10-153 1-157 (158)
118 cd04160 Arfrp1 Arfrp1 subfamil 99.9 8.7E-27 1.9E-31 165.9 14.6 140 10-153 1-166 (167)
119 cd04102 RabL3 RabL3 (Rab-like3 99.9 2.3E-26 5E-31 168.2 16.9 118 9-128 1-143 (202)
120 cd00879 Sar1 Sar1 subfamily. 99.9 1.2E-26 2.7E-31 168.6 15.1 143 5-154 16-189 (190)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.3E-26 5.1E-31 162.3 15.5 137 10-153 1-157 (158)
122 smart00178 SAR Sar1p-like memb 99.9 8.8E-26 1.9E-30 163.5 16.1 142 6-154 15-183 (184)
123 cd04159 Arl10_like Arl10-like 99.9 3E-25 6.5E-30 155.9 15.9 137 11-153 2-158 (159)
124 KOG4252|consensus 99.9 3.2E-27 6.8E-32 163.6 5.1 153 8-162 20-187 (246)
125 KOG0073|consensus 99.9 7E-25 1.5E-29 149.8 16.1 146 6-158 14-180 (185)
126 PLN00023 GTP-binding protein; 99.9 2.6E-25 5.7E-30 170.6 15.8 121 6-128 19-165 (334)
127 cd04155 Arl3 Arl3 subfamily. 99.9 7.2E-25 1.6E-29 156.9 15.9 141 6-153 12-172 (173)
128 cd01890 LepA LepA subfamily. 99.9 6.4E-25 1.4E-29 158.0 13.2 143 10-155 2-176 (179)
129 cd01897 NOG NOG1 is a nucleola 99.9 3.3E-24 7.1E-29 152.7 15.7 143 9-155 1-167 (168)
130 KOG0070|consensus 99.9 1.3E-24 2.8E-29 151.9 12.4 146 5-157 14-179 (181)
131 COG1100 GTPase SAR1 and relate 99.9 2.5E-23 5.3E-28 154.4 18.3 154 6-161 3-190 (219)
132 cd01878 HflX HflX subfamily. 99.9 8.2E-24 1.8E-28 155.5 15.4 147 6-155 39-204 (204)
133 PF08477 Miro: Miro-like prote 99.9 8.8E-24 1.9E-28 142.4 14.0 116 10-125 1-119 (119)
134 PTZ00099 rab6; Provisional 99.9 2.1E-23 4.6E-28 149.8 16.4 125 32-158 4-144 (176)
135 TIGR00231 small_GTP small GTP- 99.9 3.5E-23 7.5E-28 145.0 17.2 142 8-151 1-159 (161)
136 cd01898 Obg Obg subfamily. Th 99.9 1.8E-23 3.8E-28 149.2 15.0 142 10-154 2-169 (170)
137 KOG0075|consensus 99.9 2.8E-24 6.1E-29 144.3 8.4 143 7-155 19-181 (186)
138 cd04171 SelB SelB subfamily. 99.9 4.4E-23 9.6E-28 146.1 15.0 137 9-153 1-163 (164)
139 TIGR03156 GTP_HflX GTP-binding 99.9 1.1E-22 2.3E-27 160.2 15.7 143 8-154 189-350 (351)
140 KOG0096|consensus 99.9 3.8E-23 8.2E-28 144.5 11.1 151 7-159 9-172 (216)
141 PRK12299 obgE GTPase CgtA; Rev 99.9 2E-22 4.4E-27 157.5 16.4 146 9-157 159-329 (335)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.4E-22 7.5E-27 142.2 15.3 139 10-156 2-166 (168)
143 TIGR02528 EutP ethanolamine ut 99.9 6.9E-23 1.5E-27 142.2 9.3 120 10-152 2-141 (142)
144 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.4E-21 3.1E-26 137.2 15.5 139 9-155 2-156 (157)
145 cd01891 TypA_BipA TypA (tyrosi 99.9 5E-22 1.1E-26 145.0 13.0 136 9-147 3-173 (194)
146 cd00882 Ras_like_GTPase Ras-li 99.9 2.4E-21 5.3E-26 134.3 15.4 137 13-152 1-156 (157)
147 KOG0071|consensus 99.9 8E-22 1.7E-26 131.6 12.1 143 6-155 15-177 (180)
148 cd01879 FeoB Ferrous iron tran 99.9 2.8E-21 6E-26 136.1 15.1 134 13-155 1-156 (158)
149 PRK11058 GTPase HflX; Provisio 99.9 3.4E-21 7.4E-26 155.0 17.0 147 9-158 198-364 (426)
150 PRK04213 GTP-binding protein; 99.9 4E-22 8.7E-27 146.2 10.6 143 6-159 7-195 (201)
151 PRK03003 GTP-binding protein D 99.9 1.1E-21 2.4E-26 160.6 14.2 144 8-157 38-200 (472)
152 TIGR00436 era GTP-binding prot 99.9 1.8E-21 3.9E-26 148.9 13.6 141 10-157 2-165 (270)
153 TIGR02729 Obg_CgtA Obg family 99.9 4.3E-21 9.4E-26 149.9 15.9 144 9-155 158-328 (329)
154 PRK05291 trmE tRNA modificatio 99.9 2.7E-21 5.8E-26 157.1 15.2 142 7-157 214-371 (449)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 7.7E-21 1.7E-25 153.7 17.6 144 7-158 202-362 (442)
156 PRK03003 GTP-binding protein D 99.9 6.5E-21 1.4E-25 156.1 17.3 148 7-160 210-386 (472)
157 PRK15494 era GTPase Era; Provi 99.9 4.1E-21 8.9E-26 150.9 14.5 145 6-157 50-217 (339)
158 cd01889 SelB_euk SelB subfamil 99.9 3.8E-21 8.3E-26 140.1 12.9 146 9-157 1-187 (192)
159 cd01894 EngA1 EngA1 subfamily. 99.9 4.7E-21 1E-25 134.6 12.6 137 12-154 1-156 (157)
160 cd01881 Obg_like The Obg-like 99.9 4.5E-21 9.8E-26 137.3 12.7 139 13-154 1-175 (176)
161 cd00881 GTP_translation_factor 99.9 1.1E-20 2.4E-25 136.7 14.5 141 10-155 1-186 (189)
162 PF02421 FeoB_N: Ferrous iron 99.9 1.5E-20 3.4E-25 131.1 14.5 134 9-151 1-156 (156)
163 KOG1673|consensus 99.9 2.7E-21 5.8E-26 131.3 10.3 151 8-160 20-190 (205)
164 KOG0076|consensus 99.9 9.8E-22 2.1E-26 135.7 8.1 149 6-158 15-189 (197)
165 TIGR01393 lepA GTP-binding pro 99.9 6.3E-21 1.4E-25 159.2 14.1 147 8-157 3-181 (595)
166 cd01895 EngA2 EngA2 subfamily. 99.9 2.4E-20 5.3E-25 132.8 14.5 142 7-154 1-173 (174)
167 CHL00189 infB translation init 99.9 1.8E-20 3.9E-25 158.2 15.9 144 6-155 242-409 (742)
168 TIGR00487 IF-2 translation ini 99.9 4.2E-20 9.2E-25 153.6 16.8 139 6-153 85-247 (587)
169 cd04105 SR_beta Signal recogni 99.9 7.8E-20 1.7E-24 134.3 16.4 139 10-160 2-146 (203)
170 PRK15467 ethanolamine utilizat 99.9 1.6E-20 3.5E-25 132.7 12.0 129 10-158 3-149 (158)
171 PRK12297 obgE GTPase CgtA; Rev 99.8 6.4E-20 1.4E-24 147.0 16.7 147 10-159 160-330 (424)
172 KOG3883|consensus 99.8 1.2E-19 2.7E-24 122.9 14.9 160 1-161 1-180 (198)
173 TIGR03594 GTPase_EngA ribosome 99.8 8.3E-20 1.8E-24 148.3 17.0 147 6-158 170-346 (429)
174 cd04163 Era Era subfamily. Er 99.8 1.2E-19 2.6E-24 128.3 15.2 142 7-154 2-167 (168)
175 PRK00093 GTP-binding protein D 99.8 1.2E-19 2.7E-24 147.5 15.8 138 9-154 2-160 (435)
176 PRK05306 infB translation init 99.8 1.9E-19 4.1E-24 153.2 17.0 140 5-154 287-450 (787)
177 PRK12296 obgE GTPase CgtA; Rev 99.8 1.8E-19 4E-24 146.2 16.0 147 9-159 160-343 (500)
178 PRK00089 era GTPase Era; Revie 99.8 3.2E-19 7E-24 138.0 15.3 146 5-156 2-171 (292)
179 cd01888 eIF2_gamma eIF2-gamma 99.8 2.8E-19 6.1E-24 131.4 13.7 143 9-156 1-199 (203)
180 PRK12298 obgE GTPase CgtA; Rev 99.8 5.8E-19 1.3E-23 140.7 16.3 146 10-158 161-335 (390)
181 KOG0072|consensus 99.8 2.4E-20 5.1E-25 125.1 6.8 145 6-157 16-180 (182)
182 PRK00454 engB GTP-binding prot 99.8 5.5E-19 1.2E-23 128.9 14.3 140 7-156 23-194 (196)
183 PRK05433 GTP-binding protein L 99.8 2.4E-19 5.3E-24 149.8 13.9 148 8-158 7-186 (600)
184 TIGR03594 GTPase_EngA ribosome 99.8 3.2E-19 6.9E-24 144.9 14.1 140 10-157 1-161 (429)
185 TIGR03598 GTPase_YsxC ribosome 99.8 3E-19 6.4E-24 128.8 12.2 132 6-145 16-179 (179)
186 cd01896 DRG The developmentall 99.8 1.6E-18 3.4E-23 129.8 15.9 142 10-155 2-225 (233)
187 KOG4423|consensus 99.8 5.2E-22 1.1E-26 138.5 -2.7 151 8-160 25-198 (229)
188 PRK09518 bifunctional cytidyla 99.8 6.6E-19 1.4E-23 150.5 14.8 143 8-157 275-437 (712)
189 TIGR00491 aIF-2 translation in 99.8 1.4E-18 3.1E-23 144.4 16.3 143 7-155 3-215 (590)
190 PRK09518 bifunctional cytidyla 99.8 1.8E-18 3.8E-23 147.8 16.5 146 7-158 449-623 (712)
191 PRK00093 GTP-binding protein D 99.8 3.4E-18 7.3E-23 139.1 17.4 146 7-158 172-346 (435)
192 TIGR00475 selB selenocysteine- 99.8 1.5E-18 3.2E-23 144.9 15.4 139 9-157 1-167 (581)
193 cd00880 Era_like Era (E. coli 99.8 1.5E-18 3.2E-23 121.5 13.0 137 13-154 1-162 (163)
194 TIGR00437 feoB ferrous iron tr 99.8 2.2E-18 4.9E-23 144.0 15.9 132 15-155 1-154 (591)
195 PF00009 GTP_EFTU: Elongation 99.8 2.4E-19 5.1E-24 130.3 8.7 146 7-155 2-186 (188)
196 KOG1707|consensus 99.8 2.3E-19 5E-24 144.4 9.3 156 1-160 1-179 (625)
197 cd04168 TetM_like Tet(M)-like 99.8 1.7E-18 3.7E-23 129.8 13.0 115 10-127 1-129 (237)
198 PRK09554 feoB ferrous iron tra 99.8 7.8E-18 1.7E-22 143.9 17.1 141 6-155 1-167 (772)
199 COG2229 Predicted GTPase [Gene 99.8 1.4E-17 3.1E-22 116.5 14.5 147 3-154 5-176 (187)
200 PRK12317 elongation factor 1-a 99.8 2.7E-18 5.8E-23 139.2 12.2 144 5-148 3-197 (425)
201 PRK04004 translation initiatio 99.8 1.3E-17 2.7E-22 139.2 16.1 145 4-154 2-216 (586)
202 PRK10218 GTP-binding protein; 99.8 1.4E-17 3E-22 139.0 16.1 149 7-158 4-197 (607)
203 KOG0074|consensus 99.8 6E-18 1.3E-22 113.3 11.0 145 4-154 13-177 (185)
204 TIGR00483 EF-1_alpha translati 99.8 7E-18 1.5E-22 136.8 13.3 145 4-148 3-199 (426)
205 COG1160 Predicted GTPases [Gen 99.8 3.5E-18 7.6E-23 135.0 10.9 140 9-156 4-165 (444)
206 TIGR01394 TypA_BipA GTP-bindin 99.8 7E-18 1.5E-22 140.8 13.0 146 10-158 3-193 (594)
207 cd01876 YihA_EngB The YihA (En 99.8 3E-17 6.6E-22 116.2 14.2 135 10-154 1-169 (170)
208 COG0486 ThdF Predicted GTPase 99.8 7.4E-17 1.6E-21 127.9 16.2 144 7-158 216-378 (454)
209 TIGR03680 eif2g_arch translati 99.7 1.9E-17 4.1E-22 133.3 12.8 150 6-156 2-196 (406)
210 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.3E-17 2.7E-22 123.1 10.5 135 10-146 1-184 (208)
211 PRK04000 translation initiatio 99.7 3.3E-17 7.2E-22 131.9 13.2 149 3-156 4-201 (411)
212 COG1159 Era GTPase [General fu 99.7 5.8E-17 1.3E-21 121.9 13.5 148 5-158 3-174 (298)
213 cd04167 Snu114p Snu114p subfam 99.7 4.4E-17 9.5E-22 120.6 12.7 115 10-127 2-136 (213)
214 cd01884 EF_Tu EF-Tu subfamily. 99.7 2.5E-16 5.5E-21 114.8 13.8 136 7-145 1-172 (195)
215 PF09439 SRPRB: Signal recogni 99.7 4.3E-17 9.2E-22 116.2 9.2 142 8-164 3-153 (181)
216 KOG1423|consensus 99.7 1.5E-16 3.3E-21 119.6 12.5 146 6-157 70-272 (379)
217 cd01883 EF1_alpha Eukaryotic e 99.7 4.2E-17 9.1E-22 121.2 9.5 135 10-145 1-194 (219)
218 cd04104 p47_IIGP_like p47 (47- 99.7 4.5E-16 9.8E-21 113.8 14.0 146 8-162 1-190 (197)
219 PF10662 PduV-EutP: Ethanolami 99.7 1.5E-16 3.3E-21 108.8 9.9 121 10-152 3-142 (143)
220 cd04169 RF3 RF3 subfamily. Pe 99.7 2E-16 4.3E-21 120.6 11.4 118 9-129 3-138 (267)
221 PRK10512 selenocysteinyl-tRNA- 99.7 1.1E-15 2.5E-20 128.2 15.9 138 10-156 2-166 (614)
222 COG1160 Predicted GTPases [Gen 99.7 2.6E-15 5.6E-20 118.9 16.1 146 7-158 177-353 (444)
223 cd01886 EF-G Elongation factor 99.7 1.5E-15 3.3E-20 115.9 13.4 116 10-128 1-130 (270)
224 COG2262 HflX GTPases [General 99.7 5E-15 1.1E-19 115.7 16.2 151 6-159 190-359 (411)
225 cd04165 GTPBP1_like GTPBP1-lik 99.7 1.4E-15 3E-20 113.2 12.6 140 10-152 1-219 (224)
226 PF01926 MMR_HSR1: 50S ribosom 99.7 5E-15 1.1E-19 99.2 13.4 106 10-123 1-116 (116)
227 PRK13351 elongation factor G; 99.7 9.2E-16 2E-20 131.1 11.9 117 7-126 7-137 (687)
228 PRK12736 elongation factor Tu; 99.7 2.7E-15 5.8E-20 120.5 13.6 148 5-155 9-200 (394)
229 cd01885 EF2 EF2 (for archaea a 99.7 2.5E-15 5.5E-20 111.4 12.5 115 10-127 2-138 (222)
230 COG0370 FeoB Fe2+ transport sy 99.6 6.8E-15 1.5E-19 121.4 15.4 143 7-158 2-166 (653)
231 cd04170 EF-G_bact Elongation f 99.6 2.9E-15 6.4E-20 114.5 12.4 112 10-126 1-128 (268)
232 PRK12735 elongation factor Tu; 99.6 4.1E-15 8.8E-20 119.5 13.8 149 4-155 8-202 (396)
233 PLN00043 elongation factor 1-a 99.6 4E-15 8.7E-20 120.9 13.2 141 3-146 2-203 (447)
234 TIGR00485 EF-Tu translation el 99.6 5E-15 1.1E-19 119.0 13.6 136 4-142 8-179 (394)
235 KOG0077|consensus 99.6 7.5E-16 1.6E-20 106.0 7.2 141 7-154 19-191 (193)
236 CHL00071 tufA elongation facto 99.6 8.9E-15 1.9E-19 118.0 13.8 138 4-144 8-181 (409)
237 KOG1489|consensus 99.6 6.6E-15 1.4E-19 111.3 12.0 141 10-153 198-364 (366)
238 cd01850 CDC_Septin CDC/Septin. 99.6 4.2E-15 9.1E-20 113.8 11.3 118 7-128 3-157 (276)
239 COG0218 Predicted GTPase [Gene 99.6 9.7E-15 2.1E-19 104.4 12.2 141 8-157 24-198 (200)
240 COG3596 Predicted GTPase [Gene 99.6 4.2E-15 9.2E-20 110.6 10.2 151 5-160 36-226 (296)
241 TIGR02034 CysN sulfate adenyly 99.6 4.9E-15 1.1E-19 119.3 10.5 136 9-146 1-187 (406)
242 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 2.3E-14 5E-19 106.5 13.0 145 10-158 1-178 (232)
243 COG1084 Predicted GTPase [Gene 99.6 5.1E-14 1.1E-18 107.2 14.8 151 3-158 163-338 (346)
244 PRK05124 cysN sulfate adenylyl 99.6 8.9E-15 1.9E-19 119.7 11.6 141 5-147 24-216 (474)
245 cd01899 Ygr210 Ygr210 subfamil 99.6 4.6E-14 1E-18 109.8 14.5 83 11-93 1-110 (318)
246 TIGR00503 prfC peptide chain r 99.6 3.4E-14 7.3E-19 117.5 13.9 120 6-128 9-146 (527)
247 PLN03126 Elongation factor Tu; 99.6 3.5E-14 7.5E-19 116.0 13.6 138 4-144 77-250 (478)
248 PTZ00141 elongation factor 1- 99.6 2.4E-14 5.3E-19 116.4 12.6 141 4-146 3-203 (446)
249 PRK00741 prfC peptide chain re 99.6 2.6E-14 5.7E-19 118.0 12.9 120 7-129 9-146 (526)
250 PRK00049 elongation factor Tu; 99.6 6.5E-14 1.4E-18 112.5 14.3 136 4-142 8-179 (396)
251 COG0532 InfB Translation initi 99.6 1.6E-13 3.5E-18 110.5 14.7 143 6-158 3-172 (509)
252 PLN03127 Elongation factor Tu; 99.6 1.4E-13 3.1E-18 111.8 14.5 149 4-155 57-251 (447)
253 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 4E-13 8.6E-18 98.2 14.9 148 9-158 1-186 (196)
254 COG0536 Obg Predicted GTPase [ 99.5 2.1E-13 4.4E-18 104.4 13.3 146 11-159 162-336 (369)
255 KOG0462|consensus 99.5 7.7E-14 1.7E-18 112.2 11.4 147 9-158 61-237 (650)
256 PRK05506 bifunctional sulfate 99.5 6.1E-14 1.3E-18 118.8 11.6 139 6-146 22-211 (632)
257 KOG1191|consensus 99.5 3.5E-13 7.6E-18 107.3 13.5 151 7-160 267-454 (531)
258 COG1163 DRG Predicted GTPase [ 99.5 5.2E-13 1.1E-17 101.5 13.9 146 8-157 63-290 (365)
259 KOG1145|consensus 99.5 3.9E-13 8.5E-18 108.2 13.5 143 5-156 150-316 (683)
260 TIGR00484 EF-G translation elo 99.5 3.6E-13 7.8E-18 115.2 13.5 117 7-128 9-141 (689)
261 PRK09602 translation-associate 99.5 1.3E-12 2.8E-17 104.6 15.4 85 9-93 2-113 (396)
262 TIGR00490 aEF-2 translation el 99.5 9.8E-14 2.1E-18 118.9 9.4 121 6-129 17-153 (720)
263 COG0481 LepA Membrane GTPase L 99.5 3.8E-13 8.2E-18 106.8 11.9 148 9-159 10-189 (603)
264 TIGR00991 3a0901s02IAP34 GTP-b 99.5 3.2E-12 6.8E-17 98.2 16.2 121 5-128 35-167 (313)
265 smart00010 small_GTPase Small 99.5 1.2E-13 2.6E-18 93.2 7.2 106 9-145 1-115 (124)
266 KOG3905|consensus 99.5 1.1E-12 2.4E-17 99.8 13.0 149 8-159 52-293 (473)
267 KOG1532|consensus 99.5 2.2E-13 4.8E-18 101.4 8.9 100 58-158 115-266 (366)
268 KOG0090|consensus 99.5 5.6E-13 1.2E-17 95.7 10.1 112 7-125 37-156 (238)
269 PTZ00327 eukaryotic translatio 99.5 9E-13 1.9E-17 107.2 12.4 151 5-156 31-233 (460)
270 cd01853 Toc34_like Toc34-like 99.4 3.9E-12 8.4E-17 96.0 13.1 121 6-129 29-164 (249)
271 KOG1490|consensus 99.4 1.1E-12 2.3E-17 104.8 10.0 160 2-165 162-350 (620)
272 PRK12739 elongation factor G; 99.4 2.3E-12 5E-17 110.3 12.5 117 7-128 7-139 (691)
273 PRK14845 translation initiatio 99.4 4E-12 8.7E-17 111.3 13.2 128 19-154 472-671 (1049)
274 COG5256 TEF1 Translation elong 99.4 2.2E-12 4.7E-17 101.1 10.1 143 4-146 3-201 (428)
275 PF05783 DLIC: Dynein light in 99.4 1.7E-11 3.7E-16 99.7 14.9 150 6-160 23-268 (472)
276 PRK00007 elongation factor G; 99.4 7E-12 1.5E-16 107.3 13.1 117 7-128 9-141 (693)
277 PRK09866 hypothetical protein; 99.4 3.2E-11 7E-16 99.9 14.7 94 59-153 230-350 (741)
278 PF04548 AIG1: AIG1 family; I 99.3 1.1E-10 2.4E-15 86.3 15.1 149 9-159 1-189 (212)
279 PLN00116 translation elongatio 99.3 6.9E-12 1.5E-16 109.3 9.5 120 5-127 16-163 (843)
280 PF03029 ATP_bind_1: Conserved 99.3 1.7E-11 3.6E-16 92.0 9.9 94 60-155 92-236 (238)
281 PRK13768 GTPase; Provisional 99.3 1.9E-11 4.1E-16 92.7 10.0 96 60-155 98-246 (253)
282 cd00066 G-alpha G protein alph 99.3 1.6E-10 3.6E-15 90.3 15.2 70 58-127 160-241 (317)
283 COG4917 EutP Ethanolamine util 99.3 5E-12 1.1E-16 83.4 5.3 124 9-153 2-143 (148)
284 KOG0705|consensus 99.3 1.3E-11 2.8E-16 99.5 7.7 154 3-167 25-200 (749)
285 PTZ00416 elongation factor 2; 99.3 2.5E-11 5.3E-16 105.7 10.0 119 6-127 17-157 (836)
286 PRK12740 elongation factor G; 99.3 1.7E-11 3.6E-16 104.9 8.8 109 14-127 1-125 (668)
287 TIGR00101 ureG urease accessor 99.3 1.1E-10 2.5E-15 85.3 11.3 85 59-155 92-195 (199)
288 PRK07560 elongation factor EF- 99.3 8.1E-11 1.7E-15 101.4 12.0 120 7-129 19-154 (731)
289 smart00275 G_alpha G protein a 99.2 4.4E-10 9.6E-15 88.6 14.9 69 59-127 184-264 (342)
290 COG1217 TypA Predicted membran 99.2 1.7E-10 3.6E-15 91.8 12.1 151 6-159 3-198 (603)
291 TIGR00157 ribosome small subun 99.2 8.7E-11 1.9E-15 88.7 7.6 82 70-153 24-120 (245)
292 COG0480 FusA Translation elong 99.2 1E-10 2.3E-15 99.0 8.7 121 6-129 8-143 (697)
293 PF00735 Septin: Septin; Inte 99.2 5.9E-10 1.3E-14 85.6 11.8 117 8-127 4-155 (281)
294 PF05049 IIGP: Interferon-indu 99.2 6.2E-10 1.4E-14 87.8 12.1 149 6-160 33-222 (376)
295 PRK09435 membrane ATPase/prote 99.2 8.1E-10 1.8E-14 86.4 12.4 89 58-156 148-260 (332)
296 TIGR00750 lao LAO/AO transport 99.2 9.2E-10 2E-14 85.6 12.5 89 58-156 126-238 (300)
297 COG4108 PrfC Peptide chain rel 99.1 1.2E-09 2.5E-14 86.5 11.8 114 7-123 11-142 (528)
298 PF00350 Dynamin_N: Dynamin fa 99.1 7.6E-10 1.6E-14 78.7 9.2 63 60-124 102-168 (168)
299 KOG0461|consensus 99.1 1.8E-09 3.9E-14 83.2 11.0 153 1-158 1-195 (522)
300 cd01882 BMS1 Bms1. Bms1 is an 99.1 2.9E-09 6.2E-14 79.5 11.4 109 5-126 36-145 (225)
301 KOG1144|consensus 99.1 1.6E-09 3.4E-14 90.5 10.6 149 7-161 474-692 (1064)
302 KOG0410|consensus 99.1 1.7E-09 3.7E-14 82.7 9.7 149 8-159 178-344 (410)
303 TIGR00073 hypB hydrogenase acc 99.1 2.6E-09 5.6E-14 78.8 10.5 138 7-154 21-205 (207)
304 COG2895 CysN GTPases - Sulfate 99.0 1.8E-09 3.9E-14 83.4 9.7 140 5-146 3-193 (431)
305 TIGR00993 3a0901s04IAP86 chlor 99.0 7E-09 1.5E-13 86.6 12.6 117 8-128 118-250 (763)
306 KOG0468|consensus 99.0 2.4E-09 5.3E-14 88.5 9.7 121 2-125 122-260 (971)
307 KOG1707|consensus 99.0 1.2E-08 2.7E-13 83.2 13.4 148 6-159 423-586 (625)
308 PTZ00258 GTP-binding protein; 99.0 6.3E-09 1.4E-13 82.9 10.8 86 6-93 19-126 (390)
309 KOG0458|consensus 99.0 9.8E-09 2.1E-13 83.8 11.1 142 6-147 175-373 (603)
310 PRK09601 GTP-binding protein Y 99.0 6.9E-09 1.5E-13 81.9 9.8 83 9-93 3-107 (364)
311 cd01900 YchF YchF subfamily. 98.9 8E-09 1.7E-13 78.9 9.2 81 11-93 1-103 (274)
312 COG3276 SelB Selenocysteine-sp 98.9 1.5E-08 3.3E-13 80.4 10.7 141 10-156 2-162 (447)
313 KOG3887|consensus 98.9 8E-09 1.7E-13 76.1 8.0 146 9-160 28-206 (347)
314 COG0378 HypB Ni2+-binding GTPa 98.9 7.8E-09 1.7E-13 73.9 7.2 65 84-155 119-200 (202)
315 smart00053 DYNc Dynamin, GTPas 98.9 4.9E-08 1.1E-12 73.2 11.6 28 6-33 24-51 (240)
316 TIGR02836 spore_IV_A stage IV 98.9 4.2E-08 9E-13 78.0 11.2 144 8-153 17-234 (492)
317 KOG3886|consensus 98.8 4.6E-09 1E-13 76.7 5.0 117 8-127 4-129 (295)
318 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.1E-08 2.4E-13 70.8 6.3 55 9-69 84-138 (141)
319 KOG2486|consensus 98.8 1.2E-08 2.6E-13 76.5 5.8 137 7-152 135-312 (320)
320 KOG0082|consensus 98.8 3.6E-07 7.8E-12 71.6 13.5 101 59-159 195-347 (354)
321 PF03308 ArgK: ArgK protein; 98.7 1.2E-08 2.6E-13 76.3 4.7 86 59-154 122-228 (266)
322 cd01858 NGP_1 NGP-1. Autoanti 98.7 3.9E-08 8.4E-13 69.3 6.9 57 7-69 101-157 (157)
323 KOG1954|consensus 98.7 1E-07 2.2E-12 74.3 9.3 115 8-126 58-223 (532)
324 cd04178 Nucleostemin_like Nucl 98.7 4.2E-08 9.1E-13 70.2 6.8 56 8-69 117-172 (172)
325 COG1703 ArgK Putative periplas 98.7 2.5E-07 5.5E-12 70.4 11.2 88 59-156 144-254 (323)
326 cd01855 YqeH YqeH. YqeH is an 98.7 5.4E-08 1.2E-12 70.7 6.9 80 72-156 24-125 (190)
327 COG5019 CDC3 Septin family pro 98.7 3.1E-07 6.7E-12 71.6 11.2 66 6-71 21-94 (373)
328 COG0050 TufB GTPases - transla 98.7 4.8E-08 1E-12 74.0 6.3 118 4-127 8-141 (394)
329 KOG2655|consensus 98.6 3.4E-07 7.4E-12 71.7 10.3 116 8-126 21-170 (366)
330 COG5257 GCD11 Translation init 98.6 1.5E-07 3.3E-12 72.1 7.9 153 6-159 8-205 (415)
331 PRK10463 hydrogenase nickel in 98.6 1.6E-07 3.6E-12 71.9 8.0 41 114-154 230-287 (290)
332 TIGR03596 GTPase_YlqF ribosome 98.6 2.7E-07 5.9E-12 70.9 9.1 58 6-69 116-173 (276)
333 cd01855 YqeH YqeH. YqeH is an 98.6 1E-07 2.2E-12 69.2 6.2 59 8-69 127-190 (190)
334 cd01856 YlqF YlqF. Proteins o 98.6 1.6E-07 3.4E-12 67.2 6.9 57 7-69 114-170 (171)
335 cd01859 MJ1464 MJ1464. This f 98.6 2E-07 4.3E-12 65.5 7.2 57 7-69 100-156 (156)
336 PRK09563 rbgA GTPase YlqF; Rev 98.6 2.3E-07 5.1E-12 71.7 8.1 59 6-70 119-177 (287)
337 KOG1547|consensus 98.6 1E-06 2.2E-11 65.1 10.9 64 8-71 46-116 (336)
338 KOG1486|consensus 98.6 2.8E-06 6.1E-11 63.3 12.3 97 7-107 61-165 (364)
339 TIGR00092 GTP-binding protein 98.6 5E-07 1.1E-11 71.5 8.9 83 9-93 3-108 (368)
340 cd01854 YjeQ_engC YjeQ/EngC. 98.5 2.4E-07 5.2E-12 71.6 6.9 75 77-153 73-161 (287)
341 cd01859 MJ1464 MJ1464. This f 98.5 3.3E-07 7.2E-12 64.4 7.0 81 74-157 4-97 (156)
342 COG0012 Predicted GTPase, prob 98.5 7E-07 1.5E-11 70.0 8.7 86 8-93 2-108 (372)
343 PF03193 DUF258: Protein of un 98.5 1.4E-07 3E-12 66.3 4.3 62 9-73 36-101 (161)
344 COG1161 Predicted GTPases [Gen 98.5 3.3E-07 7.1E-12 71.9 6.6 59 6-70 130-188 (322)
345 PRK12289 GTPase RsgA; Reviewed 98.5 6.9E-07 1.5E-11 70.8 8.3 78 75-154 82-173 (352)
346 COG1618 Predicted nucleotide k 98.5 1.8E-05 4E-10 55.1 14.0 140 6-156 3-176 (179)
347 PRK00098 GTPase RsgA; Reviewed 98.5 4.3E-07 9.3E-12 70.6 6.7 74 78-153 76-164 (298)
348 PRK12288 GTPase RsgA; Reviewed 98.5 3.7E-07 8.1E-12 72.2 6.3 61 10-73 207-271 (347)
349 cd01849 YlqF_related_GTPase Yl 98.5 6.4E-07 1.4E-11 62.9 6.9 58 6-69 98-155 (155)
350 KOG1491|consensus 98.5 1.2E-06 2.5E-11 67.8 8.4 87 5-93 17-125 (391)
351 PRK12288 GTPase RsgA; Reviewed 98.4 9.8E-07 2.1E-11 69.8 7.4 72 80-153 118-205 (347)
352 TIGR00157 ribosome small subun 98.4 6.8E-07 1.5E-11 67.6 6.2 61 9-73 121-185 (245)
353 cd01851 GBP Guanylate-binding 98.4 5.1E-06 1.1E-10 62.0 10.5 89 5-94 4-103 (224)
354 KOG0465|consensus 98.4 5.4E-07 1.2E-11 74.2 5.5 112 9-123 40-165 (721)
355 COG5258 GTPBP1 GTPase [General 98.4 3.2E-06 7E-11 66.5 9.4 142 6-150 115-333 (527)
356 PRK12289 GTPase RsgA; Reviewed 98.4 8E-07 1.7E-11 70.4 6.1 60 10-72 174-237 (352)
357 TIGR03348 VI_IcmF type VI secr 98.4 1.6E-06 3.5E-11 78.6 8.7 114 11-129 114-258 (1169)
358 TIGR03597 GTPase_YqeH ribosome 98.3 1.1E-06 2.3E-11 70.1 6.1 81 69-154 50-151 (360)
359 KOG0464|consensus 98.3 1.1E-07 2.4E-12 75.2 -0.0 117 9-128 38-168 (753)
360 COG1162 Predicted GTPases [Gen 98.3 1.9E-06 4.1E-11 66.1 6.0 58 10-73 166-230 (301)
361 KOG0467|consensus 98.3 5E-06 1.1E-10 70.2 8.6 113 7-125 8-135 (887)
362 KOG0099|consensus 98.2 3.9E-05 8.4E-10 57.6 12.0 107 58-164 201-377 (379)
363 TIGR03597 GTPase_YqeH ribosome 98.2 4.9E-06 1.1E-10 66.4 6.7 60 9-71 155-216 (360)
364 cd01854 YjeQ_engC YjeQ/EngC. 98.2 4.9E-06 1.1E-10 64.4 6.3 62 9-73 162-227 (287)
365 KOG0448|consensus 98.2 4.8E-05 1E-09 63.9 11.8 118 6-126 107-273 (749)
366 PRK13796 GTPase YqeH; Provisio 98.1 5.8E-06 1.3E-10 66.1 6.3 60 8-70 160-221 (365)
367 KOG1487|consensus 98.1 3.1E-05 6.8E-10 58.0 9.1 145 8-156 59-281 (358)
368 PRK00098 GTPase RsgA; Reviewed 98.1 8.2E-06 1.8E-10 63.5 6.3 25 9-33 165-189 (298)
369 KOG1143|consensus 98.1 1.9E-05 4.1E-10 62.1 7.9 139 7-148 166-380 (591)
370 COG5192 BMS1 GTP-binding prote 98.1 1.9E-05 4.1E-10 65.1 8.3 110 6-127 67-176 (1077)
371 cd01849 YlqF_related_GTPase Yl 98.1 2.5E-05 5.5E-10 54.8 7.6 71 84-156 1-85 (155)
372 KOG0085|consensus 98.0 5.6E-06 1.2E-10 61.0 4.0 27 134-160 327-353 (359)
373 PRK10416 signal recognition pa 98.0 8.8E-05 1.9E-09 58.2 10.8 83 58-148 196-302 (318)
374 TIGR00064 ftsY signal recognit 98.0 0.00014 3.1E-09 55.8 11.5 83 58-148 154-260 (272)
375 cd01858 NGP_1 NGP-1. Autoanti 98.0 2.4E-05 5.2E-10 55.0 6.8 75 78-155 4-94 (157)
376 cd03112 CobW_like The function 98.0 5.7E-05 1.2E-09 53.3 8.4 21 11-31 3-23 (158)
377 KOG1424|consensus 97.9 1.2E-05 2.7E-10 65.3 4.5 57 8-70 314-370 (562)
378 TIGR01425 SRP54_euk signal rec 97.9 3.9E-05 8.4E-10 62.2 7.2 22 8-29 100-121 (429)
379 PRK14974 cell division protein 97.9 0.0001 2.3E-09 58.1 9.4 83 59-149 223-323 (336)
380 cd01856 YlqF YlqF. Proteins o 97.9 2.7E-05 5.8E-10 55.6 5.5 76 76-156 13-101 (171)
381 cd03115 SRP The signal recogni 97.9 4.3E-05 9.2E-10 54.6 6.0 80 58-142 82-167 (173)
382 KOG0460|consensus 97.9 3.6E-05 7.8E-10 59.8 5.6 121 5-127 51-183 (449)
383 PRK13695 putative NTPase; Prov 97.8 0.0007 1.5E-08 48.4 12.0 22 9-30 1-22 (174)
384 PRK13796 GTPase YqeH; Provisio 97.8 8.3E-05 1.8E-09 59.5 6.9 66 84-154 71-157 (365)
385 PF13207 AAA_17: AAA domain; P 97.8 2.6E-05 5.7E-10 52.1 3.3 22 10-31 1-22 (121)
386 COG0563 Adk Adenylate kinase a 97.7 2.6E-05 5.7E-10 56.0 3.2 23 9-31 1-23 (178)
387 KOG4273|consensus 97.7 0.00012 2.5E-09 54.8 6.3 114 8-125 4-120 (418)
388 PRK08118 topology modulation p 97.7 3.5E-05 7.5E-10 54.9 3.3 23 9-31 2-24 (167)
389 TIGR03596 GTPase_YlqF ribosome 97.7 0.00019 4.2E-09 55.2 7.5 78 76-158 15-105 (276)
390 PRK07261 topology modulation p 97.7 3.7E-05 8.1E-10 54.9 3.3 23 9-31 1-23 (171)
391 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 8.2E-05 1.8E-09 51.3 4.9 64 77-143 6-84 (141)
392 PRK01889 GTPase RsgA; Reviewed 97.7 0.00024 5.3E-09 56.6 7.9 71 80-152 110-193 (356)
393 KOG0469|consensus 97.6 0.00042 9E-09 56.7 8.9 139 6-159 17-186 (842)
394 COG3523 IcmF Type VI protein s 97.6 0.00031 6.8E-09 63.2 8.9 142 11-158 128-316 (1188)
395 PF06858 NOG1: Nucleolar GTP-b 97.6 0.00033 7.2E-09 40.2 5.8 44 82-125 13-58 (58)
396 COG1126 GlnQ ABC-type polar am 97.6 7.3E-05 1.6E-09 54.8 3.8 26 8-33 28-53 (240)
397 PF13671 AAA_33: AAA domain; P 97.6 6E-05 1.3E-09 51.9 3.0 20 11-30 2-21 (143)
398 KOG3859|consensus 97.6 0.00024 5.1E-09 54.0 6.1 62 8-69 42-105 (406)
399 PRK12727 flagellar biosynthesi 97.6 0.0006 1.3E-08 56.7 9.0 23 8-30 350-372 (559)
400 cd02038 FleN-like FleN is a me 97.6 0.00062 1.4E-08 46.9 7.8 106 12-126 4-109 (139)
401 PRK09563 rbgA GTPase YlqF; Rev 97.5 0.00038 8.1E-09 54.0 7.3 78 76-158 18-108 (287)
402 cd02042 ParA ParA and ParB of 97.5 0.00091 2E-08 43.4 8.2 82 11-106 2-84 (104)
403 COG1116 TauB ABC-type nitrate/ 97.5 6.7E-05 1.5E-09 56.0 3.0 24 9-32 30-53 (248)
404 KOG2484|consensus 97.5 9.4E-05 2E-09 58.5 3.8 59 6-70 250-308 (435)
405 COG1117 PstB ABC-type phosphat 97.5 0.00025 5.4E-09 52.0 5.7 24 9-32 34-57 (253)
406 cd03222 ABC_RNaseL_inhibitor T 97.5 0.0011 2.4E-08 47.6 9.1 25 8-32 25-49 (177)
407 PF09547 Spore_IV_A: Stage IV 97.5 0.0015 3.3E-08 52.6 10.4 22 8-29 17-38 (492)
408 KOG1533|consensus 97.5 3.2E-05 6.8E-10 57.2 0.9 68 59-128 97-177 (290)
409 PRK05480 uridine/cytidine kina 97.5 0.00013 2.8E-09 53.8 4.2 28 4-31 2-29 (209)
410 PF05621 TniB: Bacterial TniB 97.5 0.00052 1.1E-08 53.0 7.5 26 7-32 60-85 (302)
411 COG1419 FlhF Flagellar GTP-bin 97.5 0.0004 8.6E-09 55.6 7.1 110 8-126 203-350 (407)
412 PF00503 G-alpha: G-protein al 97.5 0.0011 2.4E-08 53.6 9.8 102 58-161 235-358 (389)
413 PRK14530 adenylate kinase; Pro 97.5 0.00011 2.3E-09 54.5 3.6 23 8-30 3-25 (215)
414 cd02019 NK Nucleoside/nucleoti 97.5 0.00012 2.7E-09 44.0 3.2 21 11-31 2-22 (69)
415 PF13521 AAA_28: AAA domain; P 97.5 6.9E-05 1.5E-09 53.0 2.3 22 10-31 1-22 (163)
416 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.0023 5E-08 40.4 9.4 70 11-96 2-72 (99)
417 PF00004 AAA: ATPase family as 97.5 0.00012 2.6E-09 49.4 3.2 21 11-31 1-21 (132)
418 PRK06217 hypothetical protein; 97.5 0.00013 2.8E-09 52.7 3.4 23 9-31 2-24 (183)
419 KOG0463|consensus 97.4 0.00034 7.4E-09 55.3 5.8 26 6-31 131-156 (641)
420 PF13555 AAA_29: P-loop contai 97.4 0.00016 3.6E-09 42.4 3.1 24 10-33 25-48 (62)
421 PRK14738 gmk guanylate kinase; 97.4 0.00026 5.6E-09 52.1 4.8 26 6-31 11-36 (206)
422 PRK03839 putative kinase; Prov 97.4 0.00014 3E-09 52.3 3.3 22 10-31 2-23 (180)
423 PRK07429 phosphoribulokinase; 97.4 0.0002 4.4E-09 56.3 4.4 31 1-31 1-31 (327)
424 COG1136 SalX ABC-type antimicr 97.4 0.00017 3.6E-09 53.5 3.7 24 10-33 33-56 (226)
425 PRK10751 molybdopterin-guanine 97.4 0.00019 4.2E-09 51.2 3.8 24 8-31 6-29 (173)
426 PRK08233 hypothetical protein; 97.4 0.00018 3.8E-09 51.6 3.7 25 7-31 2-26 (182)
427 smart00382 AAA ATPases associa 97.4 0.00017 3.7E-09 48.6 3.5 26 8-33 2-27 (148)
428 KOG2485|consensus 97.4 0.00027 5.9E-09 54.4 4.5 63 6-69 141-206 (335)
429 PRK00300 gmk guanylate kinase; 97.4 0.00022 4.7E-09 52.3 3.8 27 5-31 2-28 (205)
430 COG3839 MalK ABC-type sugar tr 97.4 0.00019 4.1E-09 56.4 3.6 24 10-33 31-54 (338)
431 PRK14737 gmk guanylate kinase; 97.4 0.00032 7E-09 50.8 4.6 25 7-31 3-27 (186)
432 PF03266 NTPase_1: NTPase; In 97.4 0.00019 4.1E-09 51.1 3.3 22 10-31 1-22 (168)
433 PF00005 ABC_tran: ABC transpo 97.4 0.00017 3.8E-09 49.2 3.0 25 8-32 11-35 (137)
434 PTZ00088 adenylate kinase 1; P 97.4 0.0002 4.4E-09 53.5 3.6 24 7-30 5-28 (229)
435 PRK10078 ribose 1,5-bisphospho 97.3 0.00019 4E-09 52.0 3.2 22 10-31 4-25 (186)
436 TIGR00235 udk uridine kinase. 97.3 0.00027 5.8E-09 52.0 4.1 27 5-31 3-29 (207)
437 KOG3347|consensus 97.3 0.00017 3.7E-09 49.7 2.7 26 5-30 4-29 (176)
438 cd00071 GMPK Guanosine monopho 97.3 0.00019 4.2E-09 49.3 3.1 21 11-31 2-22 (137)
439 cd03111 CpaE_like This protein 97.3 0.0023 5.1E-08 41.9 8.1 99 14-123 6-106 (106)
440 PF13238 AAA_18: AAA domain; P 97.3 0.00019 4.1E-09 48.2 3.0 21 11-31 1-21 (129)
441 PRK14532 adenylate kinase; Pro 97.3 0.00021 4.5E-09 51.7 3.2 22 9-30 1-22 (188)
442 TIGR02322 phosphon_PhnN phosph 97.3 0.00021 4.6E-09 51.2 3.2 22 10-31 3-24 (179)
443 KOG3354|consensus 97.3 0.003 6.5E-08 44.0 8.4 27 4-30 8-34 (191)
444 PRK12726 flagellar biosynthesi 97.3 0.0003 6.5E-09 56.2 4.0 22 8-29 206-227 (407)
445 PRK14531 adenylate kinase; Pro 97.3 0.00026 5.6E-09 51.1 3.3 24 8-31 2-25 (183)
446 PF07728 AAA_5: AAA domain (dy 97.3 0.00027 5.9E-09 48.5 3.2 22 10-31 1-22 (139)
447 KOG2423|consensus 97.3 0.00041 8.9E-09 55.2 4.5 85 5-98 304-390 (572)
448 COG4525 TauB ABC-type taurine 97.3 0.00023 5E-09 51.6 2.8 23 9-31 32-54 (259)
449 PF03205 MobB: Molybdopterin g 97.3 0.00029 6.3E-09 48.7 3.3 22 10-31 2-23 (140)
450 PLN02674 adenylate kinase 97.3 0.00027 5.9E-09 53.3 3.3 25 6-30 29-53 (244)
451 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00027 5.9E-09 46.3 2.8 21 9-29 16-36 (107)
452 TIGR03263 guanyl_kin guanylate 97.2 0.00028 6E-09 50.6 3.0 22 10-31 3-24 (180)
453 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00027 5.9E-09 50.9 3.0 22 9-30 4-25 (188)
454 PF04665 Pox_A32: Poxvirus A32 97.2 0.00033 7.1E-09 52.6 3.4 26 6-31 11-36 (241)
455 COG3842 PotA ABC-type spermidi 97.2 0.00034 7.4E-09 55.3 3.6 25 10-34 33-57 (352)
456 COG1120 FepC ABC-type cobalami 97.2 0.00028 6.1E-09 53.4 3.0 23 9-31 29-51 (258)
457 PRK13949 shikimate kinase; Pro 97.2 0.00035 7.7E-09 49.8 3.3 22 10-31 3-24 (169)
458 PRK02496 adk adenylate kinase; 97.2 0.00036 7.7E-09 50.3 3.4 22 9-30 2-23 (184)
459 PRK05416 glmZ(sRNA)-inactivati 97.2 0.0067 1.5E-07 47.0 10.4 22 9-30 7-28 (288)
460 cd03238 ABC_UvrA The excision 97.2 0.00037 7.9E-09 50.1 3.2 22 8-29 21-42 (176)
461 COG1936 Predicted nucleotide k 97.2 0.00034 7.4E-09 49.4 2.9 21 9-29 1-21 (180)
462 PRK00625 shikimate kinase; Pro 97.2 0.0004 8.7E-09 49.7 3.3 23 9-31 1-23 (173)
463 cd02023 UMPK Uridine monophosp 97.2 0.00036 7.8E-09 50.9 3.1 21 11-31 2-22 (198)
464 PRK05541 adenylylsulfate kinas 97.2 0.00056 1.2E-08 48.9 4.1 26 5-30 4-29 (176)
465 PRK06547 hypothetical protein; 97.2 0.00052 1.1E-08 49.1 3.8 26 6-31 13-38 (172)
466 PRK05057 aroK shikimate kinase 97.1 0.00048 1.1E-08 49.2 3.6 24 8-31 4-27 (172)
467 cd01428 ADK Adenylate kinase ( 97.1 0.00036 7.9E-09 50.5 3.0 22 10-31 1-22 (194)
468 COG3840 ThiQ ABC-type thiamine 97.1 0.00045 9.7E-09 49.5 3.1 25 9-33 26-50 (231)
469 PRK01889 GTPase RsgA; Reviewed 97.1 0.00057 1.2E-08 54.6 4.1 24 9-32 196-219 (356)
470 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00041 8.9E-09 49.9 3.1 20 11-30 2-21 (183)
471 PLN02200 adenylate kinase fami 97.1 0.00054 1.2E-08 51.5 3.7 24 7-30 42-65 (234)
472 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00093 2E-08 45.6 4.4 26 7-32 21-46 (133)
473 PRK08356 hypothetical protein; 97.1 0.00064 1.4E-08 49.6 3.8 24 7-30 4-27 (195)
474 cd01130 VirB11-like_ATPase Typ 97.1 0.00053 1.1E-08 49.6 3.3 24 8-31 25-48 (186)
475 TIGR01351 adk adenylate kinase 97.1 0.00044 9.6E-09 51.0 2.9 21 10-30 1-21 (210)
476 cd01131 PilT Pilus retraction 97.1 0.00051 1.1E-08 50.3 3.1 22 11-32 4-25 (198)
477 TIGR01313 therm_gnt_kin carboh 97.1 0.00042 9E-09 48.9 2.6 21 11-31 1-21 (163)
478 COG3638 ABC-type phosphate/pho 97.1 0.00048 1E-08 51.2 2.9 22 9-30 31-52 (258)
479 PTZ00301 uridine kinase; Provi 97.1 0.00067 1.5E-08 50.1 3.7 24 6-29 1-24 (210)
480 cd00009 AAA The AAA+ (ATPases 97.1 0.0006 1.3E-08 46.4 3.3 25 8-32 19-43 (151)
481 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.1 0.00053 1.2E-08 50.7 3.2 24 9-32 31-54 (218)
482 PRK00279 adk adenylate kinase; 97.1 0.00055 1.2E-08 50.7 3.2 22 9-30 1-22 (215)
483 PRK04040 adenylate kinase; Pro 97.1 0.00066 1.4E-08 49.3 3.6 24 8-31 2-25 (188)
484 PF13401 AAA_22: AAA domain; P 97.1 0.00055 1.2E-08 46.2 3.0 23 9-31 5-27 (131)
485 PRK04195 replication factor C 97.0 0.0071 1.5E-07 50.4 10.0 24 8-31 39-62 (482)
486 PRK14529 adenylate kinase; Pro 97.0 0.00058 1.3E-08 50.8 3.2 22 9-30 1-22 (223)
487 COG0194 Gmk Guanylate kinase [ 97.0 0.00061 1.3E-08 48.8 3.1 26 7-32 3-28 (191)
488 PF13191 AAA_16: AAA ATPase do 97.0 0.00056 1.2E-08 48.9 3.0 24 6-29 22-45 (185)
489 PHA00729 NTP-binding motif con 97.0 0.00073 1.6E-08 50.2 3.5 23 9-31 18-40 (226)
490 PRK14526 adenylate kinase; Pro 97.0 0.00066 1.4E-08 50.2 3.3 22 9-30 1-22 (211)
491 cd03226 ABC_cobalt_CbiO_domain 97.0 0.00063 1.4E-08 49.9 3.2 24 9-32 27-50 (205)
492 TIGR00960 3a0501s02 Type II (G 97.0 0.00063 1.4E-08 50.3 3.2 24 9-32 30-53 (216)
493 cd03225 ABC_cobalt_CbiO_domain 97.0 0.00066 1.4E-08 50.0 3.2 24 9-32 28-51 (211)
494 TIGR01166 cbiO cobalt transpor 97.0 0.00069 1.5E-08 49.1 3.2 24 9-32 19-42 (190)
495 cd03261 ABC_Org_Solvent_Resist 97.0 0.00068 1.5E-08 50.8 3.2 24 9-32 27-50 (235)
496 cd03292 ABC_FtsE_transporter F 97.0 0.0007 1.5E-08 49.9 3.2 23 9-31 28-50 (214)
497 cd02025 PanK Pantothenate kina 97.0 0.00064 1.4E-08 50.6 3.0 21 11-31 2-22 (220)
498 PLN02459 probable adenylate ki 97.0 0.00094 2E-08 50.8 3.9 24 7-30 28-51 (261)
499 cd03264 ABC_drug_resistance_li 97.0 0.00064 1.4E-08 50.1 3.0 22 10-31 27-48 (211)
500 TIGR02673 FtsE cell division A 97.0 0.00073 1.6E-08 49.9 3.2 24 9-32 29-52 (214)
No 1
>KOG0084|consensus
Probab=100.00 E-value=4.6e-39 Score=225.67 Aligned_cols=160 Identities=34% Similarity=0.495 Sum_probs=146.5
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhc
Q psy17231 2 ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYK 81 (189)
Q Consensus 2 ~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 81 (189)
+..-.+.+||+++|++|||||+|+.||..+.|.+.+ ..|+|+++...++.++++.+++++|||+||++|+++...+|+
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~--~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR 80 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESY--ISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYR 80 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhh--cceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhcc
Confidence 344467899999999999999999999999998777 899999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCc-eEEeeccCCCCH
Q psy17231 82 FAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISS-TYKTSCKTGEGV 144 (189)
Q Consensus 82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~-~~~~Sa~~~~~i 144 (189)
++|++|+|||+++++||+.+..|+.++.++. +++|.++||||||+... ..+ |+|+|||++.|+
T Consensus 81 ~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 81 GAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNV 160 (205)
T ss_pred CCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCH
Confidence 9999999999999999999999999999998 77899999999996533 225 999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q psy17231 145 EEMFADIGRQLILSNRSRL 163 (189)
Q Consensus 145 ~~~~~~i~~~i~~~~~~~~ 163 (189)
++.|..+...+..+.....
T Consensus 161 e~~F~~la~~lk~~~~~~~ 179 (205)
T KOG0084|consen 161 EDAFLTLAKELKQRKGLHV 179 (205)
T ss_pred HHHHHHHHHHHHHhcccCC
Confidence 9999999999988876544
No 2
>KOG0092|consensus
Probab=100.00 E-value=3.8e-37 Score=215.24 Aligned_cols=155 Identities=37% Similarity=0.540 Sum_probs=142.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
....+|++++|+.+||||||+-|+..+.|.+.. .+|+|-.+.++++...+..++|.||||+|+++|.++-+.++++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~--e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~ 79 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENI--EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGAN 79 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCcccccc--ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCc
Confidence 467899999999999999999999999997765 899999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
++++|||+++.+||..++.|+..+.+.. +++-+.+||||+|+... .-.|||+|||+|.|++++|
T Consensus 80 AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if 159 (200)
T KOG0092|consen 80 AAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIF 159 (200)
T ss_pred EEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHH
Confidence 9999999999999999999999999987 66777789999887652 2289999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy17231 149 ADIGRQLILSNRS 161 (189)
Q Consensus 149 ~~i~~~i~~~~~~ 161 (189)
..|.+.+......
T Consensus 160 ~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 160 QAIAEKLPCSDPQ 172 (200)
T ss_pred HHHHHhccCcccc
Confidence 9999999876544
No 3
>KOG0078|consensus
Probab=100.00 E-value=2.9e-35 Score=209.21 Aligned_cols=155 Identities=32% Similarity=0.489 Sum_probs=142.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
...+||+++|++|||||+|+.+|..+.|.... ..|+|+++..+++..++..+.+++|||+||++|..+...++++|++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~--~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSF--ISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCc--cceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 45799999999999999999999999996555 8999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||+++..+|+++..|+..+..+. +++|.++||||+|+... ...|+|+||++|.||++.|-
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 999999999999999999999999988 69999999999997542 34999999999999999999
Q ss_pred HHHHHHHHhhhhh
Q psy17231 150 DIGRQLILSNRSR 162 (189)
Q Consensus 150 ~i~~~i~~~~~~~ 162 (189)
.+.+.+.++....
T Consensus 168 ~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 168 SLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHhhcchh
Confidence 9999999765443
No 4
>KOG0394|consensus
Probab=100.00 E-value=9.1e-36 Score=206.63 Aligned_cols=159 Identities=35% Similarity=0.554 Sum_probs=144.5
Q ss_pred CCC-CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHH
Q psy17231 1 MAS-IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSY 79 (189)
Q Consensus 1 m~~-~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 79 (189)
|++ .+...+||+++|++|+|||||.+++.+.+|...+ ..|+|.++..+.+.++++.+.+++|||+|+++|.++.-.+
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qy--kaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aF 78 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQY--KATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAF 78 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHh--ccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccce
Confidence 666 3466799999999999999999999999997766 8999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeeccccccc------------------CCceEEe
Q psy17231 80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHNL------------------ISSTYKT 136 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~~------------------~~~~~~~ 136 (189)
++++|++++|||++++++|+.+..|..++.... +..|+||+|||.|..+. ..+|||+
T Consensus 79 YRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEt 158 (210)
T KOG0394|consen 79 YRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFET 158 (210)
T ss_pred ecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEe
Confidence 999999999999999999999999999998875 56899999999776431 1299999
Q ss_pred eccCCCCHHHHHHHHHHHHHHhhhh
Q psy17231 137 SCKTGEGVEEMFADIGRQLILSNRS 161 (189)
Q Consensus 137 Sa~~~~~i~~~~~~i~~~i~~~~~~ 161 (189)
|||...|+++.|+.+.+..+.....
T Consensus 159 SAK~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 159 SAKEATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred cccccccHHHHHHHHHHHHHhccch
Confidence 9999999999999999999888754
No 5
>KOG0094|consensus
Probab=100.00 E-value=1.7e-35 Score=207.23 Aligned_cols=154 Identities=31% Similarity=0.563 Sum_probs=139.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.+|++++|+.+|||||||+||..+.|...+ .+|+|.++...++.+.+..+.+++|||+||++|+.+-+.+++++.
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~Y--qATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccc--cceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 456799999999999999999999999996666 999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccc---------------cCCceEEeeccCCCCHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHN---------------LISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~---------------~~~~~~~~Sa~~~~~i~~~ 147 (189)
++|+|||++|..+|++..+|+..++... .++-+++||||.|+.. +...|+++||+.|.||.++
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQL 176 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence 9999999999999999999999999987 3577789999977542 2348999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy17231 148 FADIGRQLILSNR 160 (189)
Q Consensus 148 ~~~i~~~i~~~~~ 160 (189)
|..|...+.....
T Consensus 177 FrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 177 FRRIAAALPGMEV 189 (221)
T ss_pred HHHHHHhccCccc
Confidence 9998888876644
No 6
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.4e-34 Score=209.99 Aligned_cols=152 Identities=25% Similarity=0.351 Sum_probs=135.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
..+||+++|+.|||||||+++|..+.+...+ .++++.++....+..++..+.+++||++|+++|..++..++++++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~--~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPY--GYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 5689999999999999999999998886554 56667777777788888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc---------------cCCceEEeeccCCCCHHHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN---------------LISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~---------------~~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
++|||++++++|+++..|+.++....++.|+||||||.|+.. ...+|++|||++|.||+++|+++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l 162 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999999987778899999999999743 12379999999999999999999
Q ss_pred HHHHHHhhh
Q psy17231 152 GRQLILSNR 160 (189)
Q Consensus 152 ~~~i~~~~~ 160 (189)
++.+..+..
T Consensus 163 ~~~i~~~~~ 171 (189)
T cd04121 163 ARIVLMRHG 171 (189)
T ss_pred HHHHHHhcC
Confidence 998876544
No 7
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.5e-34 Score=211.71 Aligned_cols=149 Identities=36% Similarity=0.584 Sum_probs=132.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+.|+++|+.|||||||++++..+.|...+ .+|++.++....+..++..+.+++||++|+++|..++..++++++++++
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~--~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIl 78 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEAC--KSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL 78 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcC--CCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEE
Confidence 36899999999999999999999987655 6788878888888888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc----------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
|||++++++|+.+..|+..+.... .+.|+++|+||+|+... ...|++|||++|.||+++|+++
T Consensus 79 VfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 79 VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999887664 67999999999986321 2368999999999999999999
Q ss_pred HHHHHHhh
Q psy17231 152 GRQLILSN 159 (189)
Q Consensus 152 ~~~i~~~~ 159 (189)
++.+.+..
T Consensus 159 ~~~~~~~~ 166 (202)
T cd04120 159 VDDILKKM 166 (202)
T ss_pred HHHHHHhC
Confidence 99887653
No 8
>KOG0098|consensus
Probab=100.00 E-value=8.7e-35 Score=202.15 Aligned_cols=157 Identities=31% Similarity=0.460 Sum_probs=144.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.+|++++|+.|||||+|+.+|..+.|.+.+ ..|+|+++....+.++++++++++|||+|++.|.++...+++.+.
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~h--d~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVH--DLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccc--cceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 356799999999999999999999999997666 799999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccccC---------------CceEEeeccCCCCHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLI---------------SSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~---------------~~~~~~Sa~~~~~i~~~~ 148 (189)
++++|||++++++|..+..|+.+++++. ++..++++|||+|+..-. -.++++||++++|++|+|
T Consensus 81 GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred ceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 9999999999999999999999999996 899999999999975432 178999999999999999
Q ss_pred HHHHHHHHHhhhhhh
Q psy17231 149 ADIGRQLILSNRSRL 163 (189)
Q Consensus 149 ~~i~~~i~~~~~~~~ 163 (189)
......+.+....-.
T Consensus 161 ~nta~~Iy~~~q~g~ 175 (216)
T KOG0098|consen 161 INTAKEIYRKIQDGV 175 (216)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999998876543
No 9
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=9.9e-34 Score=206.29 Aligned_cols=150 Identities=24% Similarity=0.391 Sum_probs=130.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
|+.+||+++|++|||||||++++..+.|...+ .+|++..+ ...+..++..+.+.+|||+|+++|..++..+++++|+
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~ 77 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEY--IPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNV 77 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCC--CCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCE
Confidence 45689999999999999999999999986655 77777443 4445678888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEEe
Q psy17231 86 AILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYKT 136 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~~ 136 (189)
+++|||++++++|+.+. .|+..+....+++|+++|+||.|+.+. . .+|++|
T Consensus 78 ~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 157 (191)
T cd01875 78 FIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLEC 157 (191)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence 99999999999999996 698888766678999999999997431 1 379999
Q ss_pred eccCCCCHHHHHHHHHHHHHHh
Q psy17231 137 SCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 137 Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
||++|.||+++|+++++.+...
T Consensus 158 SAk~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 158 SALNQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999988654
No 10
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=9.8e-34 Score=203.43 Aligned_cols=145 Identities=25% Similarity=0.368 Sum_probs=128.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+|++++|++|||||||+.++..+.|...+ .+|++..+ ...+..++..+.+.+|||+|+++|..++..+++.++++++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~--~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~il 78 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDY--IPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 78 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCC--CCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEE
Confidence 68999999999999999999999997655 77877544 4456678888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc-------------------------CC-ceEEeeccCC
Q psy17231 89 VFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL-------------------------IS-STYKTSCKTG 141 (189)
Q Consensus 89 v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------------~~-~~~~~Sa~~~ 141 (189)
|||++++++|+.+ ..|+..+....+++|+++||||+|+.+. .. .|+||||++|
T Consensus 79 vyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~ 158 (176)
T cd04133 79 AFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ 158 (176)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 9999999999998 7899999877678999999999998431 12 5899999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy17231 142 EGVEEMFADIGRQLI 156 (189)
Q Consensus 142 ~~i~~~~~~i~~~i~ 156 (189)
.||+++|+.+++.+.
T Consensus 159 ~nV~~~F~~~~~~~~ 173 (176)
T cd04133 159 QNVKAVFDAAIKVVL 173 (176)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999998764
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=9.2e-34 Score=204.67 Aligned_cols=150 Identities=19% Similarity=0.359 Sum_probs=131.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
+...+||+++|++|||||||++++..+.+...+ .+|++..+ ...+..++..+.+.+|||+|+++|..++..++++++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~--~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad 78 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENY--VPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 78 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCcc--CCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCC
Confidence 346789999999999999999999999987655 77776444 456778888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccc---------------------------cC-CceEE
Q psy17231 85 AAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHN---------------------------LI-SSTYK 135 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~---------------------------~~-~~~~~ 135 (189)
++++|||++++++|+++ ..|+..+....++.|+++||||+|+.. .. .+|+|
T Consensus 79 ~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E 158 (182)
T cd04172 79 AVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 158 (182)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 99999999999999997 899999988778899999999999753 12 27999
Q ss_pred eeccCCCC-HHHHHHHHHHHHHH
Q psy17231 136 TSCKTGEG-VEEMFADIGRQLIL 157 (189)
Q Consensus 136 ~Sa~~~~~-i~~~~~~i~~~i~~ 157 (189)
|||++|.| |+++|+.+++..++
T Consensus 159 ~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 159 CSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCcCCCCCCHHHHHHHHHHHHhc
Confidence 99999998 99999999987543
No 12
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7.4e-33 Score=203.23 Aligned_cols=156 Identities=27% Similarity=0.466 Sum_probs=134.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
+||+++|++|||||||+++|.++.+...+ .+|++.++....+..+ +..+.+.+||+||++.+..++..+++.+++++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~--~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~i 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHY--KATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAI 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEE
Confidence 58999999999999999999998886655 7788878777777777 77889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeecccccc--c--------------CCceEEeeccCCCCHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHN--L--------------ISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~--~--------------~~~~~~~Sa~~~~~i~~ 146 (189)
+|||++++++|+.+..|+..+.... .++|+++|+||+|+.. . ...|+++||++|.|+++
T Consensus 79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e 158 (201)
T cd04107 79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEE 158 (201)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence 9999999999999999998886542 5789999999999751 1 13799999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhh
Q psy17231 147 MFADIGRQLILSNRSRLELQ 166 (189)
Q Consensus 147 ~~~~i~~~i~~~~~~~~~~~ 166 (189)
+|+++++.+.+.........
T Consensus 159 ~f~~l~~~l~~~~~~~~~~~ 178 (201)
T cd04107 159 AMRFLVKNILANDKNLQQAE 178 (201)
T ss_pred HHHHHHHHHHHhchhhHhhc
Confidence 99999999987755443333
No 13
>KOG0087|consensus
Probab=100.00 E-value=1.2e-33 Score=200.27 Aligned_cols=155 Identities=31% Similarity=0.475 Sum_probs=144.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||-|+.||..++|.... .+|+|+++.+.+..++++.++.+||||+||++|+.+..++++++.+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~S--ksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLES--KSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCccc--ccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 45799999999999999999999999997666 8999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccccC---------------CceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLI---------------SSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~---------------~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++.+.+|+.+..|+.+++.+. +++++++||||+|+.... -.++++||..+.|+++.|+
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE 169 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence 999999999999999999999999998 899999999999987632 1789999999999999999
Q ss_pred HHHHHHHHhhhhh
Q psy17231 150 DIGRQLILSNRSR 162 (189)
Q Consensus 150 ~i~~~i~~~~~~~ 162 (189)
.++..|.+.....
T Consensus 170 ~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 170 RVLTEIYKIVSKK 182 (222)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887654
No 14
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.8e-33 Score=200.94 Aligned_cols=146 Identities=20% Similarity=0.380 Sum_probs=127.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
++||+++|++|||||||++++..+.+...+ .+|++..+ ...+..++..+.+.+|||+|+++|..+++.+++.+++++
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~--~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~i 77 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETY--VPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVL 77 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCc--CCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEE
Confidence 479999999999999999999999887655 67776444 456778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccc---------------c------------C-CceEEeec
Q psy17231 88 LVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHN---------------L------------I-SSTYKTSC 138 (189)
Q Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~---------------~------------~-~~~~~~Sa 138 (189)
+|||++++++|+.+ ..|+..+....++.|+++||||+|+.. . . ..|+||||
T Consensus 78 lvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA 157 (178)
T cd04131 78 ICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSA 157 (178)
T ss_pred EEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECcc
Confidence 99999999999996 899999988778899999999999743 1 1 26899999
Q ss_pred cCCCC-HHHHHHHHHHHHH
Q psy17231 139 KTGEG-VEEMFADIGRQLI 156 (189)
Q Consensus 139 ~~~~~-i~~~~~~i~~~i~ 156 (189)
++|.| |+++|..++++.+
T Consensus 158 ~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 158 FTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CcCCcCHHHHHHHHHHHHh
Confidence 99995 9999999998654
No 15
>KOG0080|consensus
Probab=100.00 E-value=1.7e-33 Score=191.36 Aligned_cols=153 Identities=32% Similarity=0.481 Sum_probs=140.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
...+||+++|.+|||||||+.+|..+.|.+.. ..|+|+++..+.+.+++.++++.+|||+|+++|+.+.+.+++++.+
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~--~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLH--PTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccC--CceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCce
Confidence 34599999999999999999999999997766 7789999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccc---------------cCCceEEeeccCCCCHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHN---------------LISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~---------------~~~~~~~~Sa~~~~~i~~~~ 148 (189)
+|+|||++.+++|..+..|++++..+. +++-.++|+||.|... ..+-|+|+||++..|++..|
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 999999999999999999999998887 7788889999977552 23478999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy17231 149 ADIGRQLILSNR 160 (189)
Q Consensus 149 ~~i~~~i~~~~~ 160 (189)
+.++.+|++...
T Consensus 167 eelveKIi~tp~ 178 (209)
T KOG0080|consen 167 EELVEKIIETPS 178 (209)
T ss_pred HHHHHHHhcCcc
Confidence 999999987654
No 16
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=6e-33 Score=206.08 Aligned_cols=152 Identities=24% Similarity=0.451 Sum_probs=135.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
++..+||+++|++|||||||++++..+.+...+ .+|++.++....+..++..+.+.+||++|+++|..++..+++.++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~--~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 87 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ 87 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCcc--CCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHccccc
Confidence 467899999999999999999999999886555 778887887777777777899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
++++|||++++++|+.+..|+..+....++.|+++|+||+|+... ..+||+|||++|.|++++|+++
T Consensus 88 ~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 999999999999999999999999887778999999999997421 2378999999999999999999
Q ss_pred HHHHHHh
Q psy17231 152 GRQLILS 158 (189)
Q Consensus 152 ~~~i~~~ 158 (189)
++.+.+.
T Consensus 168 ~~~~~~~ 174 (219)
T PLN03071 168 ARKLAGD 174 (219)
T ss_pred HHHHHcC
Confidence 9988755
No 17
>KOG0093|consensus
Probab=100.00 E-value=9.7e-34 Score=189.80 Aligned_cols=156 Identities=32% Similarity=0.491 Sum_probs=142.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
..+|++++|++.+|||||+.+.....|.... ..|.|+++..+++....+.+++++|||.|+++|..+..+++++++++
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~af--vsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAF--VSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccce--eeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 3679999999999999999999999997655 88999999999988888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
|+|||++|.++|..++.|.-.+..+. .+.|+|+|+||||+... ...|||+|||.+.|++++|+.
T Consensus 98 iLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~ 177 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFER 177 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHH
Confidence 99999999999999999999998887 89999999999997533 348999999999999999999
Q ss_pred HHHHHHHhhhhhhh
Q psy17231 151 IGRQLILSNRSRLE 164 (189)
Q Consensus 151 i~~~i~~~~~~~~~ 164 (189)
++..|.++..+..+
T Consensus 178 lv~~Ic~kmsesl~ 191 (193)
T KOG0093|consen 178 LVDIICDKMSESLD 191 (193)
T ss_pred HHHHHHHHhhhhhc
Confidence 99999988776543
No 18
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.1e-32 Score=205.29 Aligned_cols=152 Identities=19% Similarity=0.334 Sum_probs=132.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
...+||+++|++|||||||+++|..+.|...+ .+|++.++ ...+..++..+.+.+|||+|+++|..++..+++++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y--~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETY--VPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCc--CCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 45789999999999999999999999887655 77877554 4457778889999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccc---------------------------cCC-ceEEe
Q psy17231 86 AILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHN---------------------------LIS-STYKT 136 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~---------------------------~~~-~~~~~ 136 (189)
+++|||++++++|+.+ ..|+..+....++.|+++|+||+|+.. ... .|+||
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~Et 167 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLEC 167 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEc
Confidence 9999999999999984 899999988777899999999999853 122 58999
Q ss_pred eccCCC-CHHHHHHHHHHHHHHhhh
Q psy17231 137 SCKTGE-GVEEMFADIGRQLILSNR 160 (189)
Q Consensus 137 Sa~~~~-~i~~~~~~i~~~i~~~~~ 160 (189)
||++|. |++++|+.+++.+.+...
T Consensus 168 SAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 168 SAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred cCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 999998 899999999999887543
No 19
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.2e-32 Score=196.17 Aligned_cols=148 Identities=30% Similarity=0.536 Sum_probs=130.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
.+||+++|++|||||||++++..+.+...+ .+|++.++....+..++..+.+.+||+||++++...+..+++.+++++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 79 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 79 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 479999999999999999999999886554 667777777777788888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
+|||++++++|+.+..|+..+.... ++.|+++|+||+|+... ..+++++||++|.|++++|+++
T Consensus 80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 80 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999887764 67999999999986432 2378999999999999999999
Q ss_pred HHHHHH
Q psy17231 152 GRQLIL 157 (189)
Q Consensus 152 ~~~i~~ 157 (189)
++.+.+
T Consensus 160 ~~~~~~ 165 (166)
T cd04122 160 AKKIYQ 165 (166)
T ss_pred HHHHhh
Confidence 988754
No 20
>KOG0079|consensus
Probab=100.00 E-value=7.9e-34 Score=190.46 Aligned_cols=152 Identities=34% Similarity=0.522 Sum_probs=139.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
..-++.+|+|++|+|||+|+.+|..+.|...+ ..|+|+++...++.+++..++++|||++|++.|..+...++++.++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sY--itTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSY--ITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccce--EEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 34578899999999999999999999886666 8899999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
+++|||+++.+||.++++|+..++...+..|-++||||+|.++- ...+||+||+...|++.+|.-
T Consensus 84 v~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred EEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 99999999999999999999999999999999999999875422 338899999999999999999
Q ss_pred HHHHHHHhh
Q psy17231 151 IGRQLILSN 159 (189)
Q Consensus 151 i~~~i~~~~ 159 (189)
|.+++.+..
T Consensus 164 it~qvl~~k 172 (198)
T KOG0079|consen 164 ITKQVLQAK 172 (198)
T ss_pred HHHHHHHHH
Confidence 999887765
No 21
>KOG0086|consensus
Probab=100.00 E-value=2.9e-33 Score=188.82 Aligned_cols=154 Identities=32% Similarity=0.509 Sum_probs=140.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
..-+|++++|+.|+|||+|+++|..+++.+.. .+|+|+++....+...++.+++++|||+|+++|++....+++++.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDds--sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDS--SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccc--cceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 55789999999999999999999999996655 8899999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccccC---------------CceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLI---------------SSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~---------------~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++++++|+.+..|+..++... +++.+++++||.|+.+.. -.+.|+||++|+|++|.|-
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl 164 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 164 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence 999999999999999999999998886 789999999997764331 1789999999999999999
Q ss_pred HHHHHHHHhhhh
Q psy17231 150 DIGRQLILSNRS 161 (189)
Q Consensus 150 ~i~~~i~~~~~~ 161 (189)
...+.|+.+...
T Consensus 165 ~c~~tIl~kIE~ 176 (214)
T KOG0086|consen 165 KCARTILNKIES 176 (214)
T ss_pred HHHHHHHHHHhh
Confidence 999988877543
No 22
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.9e-32 Score=196.47 Aligned_cols=149 Identities=20% Similarity=0.350 Sum_probs=128.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
.+||+++|.+|||||||++++..+.+...+ .+|++..+ ...+..++..+.+.+||++|++++..++..+++.+++++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~i 78 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYH--DPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFI 78 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCc--CCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEE
Confidence 579999999999999999999999886554 66666333 445677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
+|||++++++|+.+..|+..+.+.. +++|+++|+||+|+... ..+|++|||++|.||+++|++
T Consensus 79 lv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 79 ICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred EEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHH
Confidence 9999999999999999988777643 57999999999996421 248999999999999999999
Q ss_pred HHHHHHHhh
Q psy17231 151 IGRQLILSN 159 (189)
Q Consensus 151 i~~~i~~~~ 159 (189)
+++.+.+..
T Consensus 159 l~~~~~~~~ 167 (172)
T cd04141 159 LVREIRRKE 167 (172)
T ss_pred HHHHHHHhc
Confidence 999887644
No 23
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=4.2e-32 Score=193.58 Aligned_cols=147 Identities=24% Similarity=0.468 Sum_probs=130.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++..+.+...+ .+|.+.+.....+..++..+.+.+||++|++++..++..++..+|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAII 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEE
Confidence 58999999999999999999988875554 6777777777777777778999999999999999898999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~~~~~i~~~i 155 (189)
|||++++++|+.+..|+..+.....++|+++|+||+|+... ..+++++||++|.|++++|+++++.+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 99999999999999999999888778999999999886421 23799999999999999999999888
Q ss_pred HH
Q psy17231 156 IL 157 (189)
Q Consensus 156 ~~ 157 (189)
.+
T Consensus 159 ~~ 160 (166)
T cd00877 159 LG 160 (166)
T ss_pred Hh
Confidence 65
No 24
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=4.4e-32 Score=197.33 Aligned_cols=154 Identities=22% Similarity=0.352 Sum_probs=132.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
+++.+||+++|++|||||||++++....+...+ .+|.+..+ ...+.+++..+.+++|||||++++..++..+++.++
T Consensus 2 ~~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d 78 (189)
T PTZ00369 2 ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEY--DPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQ 78 (189)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHhcCCCCcCc--CCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCC
Confidence 467899999999999999999999998876554 56665444 456677888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~ 147 (189)
++++|||++++++|+.+..|+..+.+.. ++.|+++|+||+|+.+. ..+++++||++|.|++++
T Consensus 79 ~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 79 GFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEA 158 (189)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHH
Confidence 9999999999999999999999887764 57899999999997421 237899999999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy17231 148 FADIGRQLILSNRS 161 (189)
Q Consensus 148 ~~~i~~~i~~~~~~ 161 (189)
|+++++.+.+...+
T Consensus 159 ~~~l~~~l~~~~~~ 172 (189)
T PTZ00369 159 FYELVREIRKYLKE 172 (189)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999988766443
No 25
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.8e-32 Score=196.08 Aligned_cols=144 Identities=19% Similarity=0.274 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++..+.|...+ .+|++..+ ...+..++..+.+.+||++|+++|..++..+++.++++++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~--~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~il 78 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEY--VPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 78 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEE
Confidence 69999999999999999999999886554 77776544 3345677888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEEeecc
Q psy17231 89 VFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYKTSCK 139 (189)
Q Consensus 89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~~Sa~ 139 (189)
|||++++++|+.+. .|+..+....+++|+++|+||+|+... . ..|++|||+
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 99999999999996 698888776678999999999886431 1 379999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy17231 140 TGEGVEEMFADIGRQL 155 (189)
Q Consensus 140 ~~~~i~~~~~~i~~~i 155 (189)
+|.|++++|+.++++.
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 26
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=4.9e-32 Score=192.93 Aligned_cols=147 Identities=32% Similarity=0.512 Sum_probs=128.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++.+..+...+ .+|.+.++....+..++..+.+.+||++|++++...+..+++.++++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAF--VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEE
Confidence 79999999999999999999999886655 6677666666666667778899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
|||++++++|+++..|+..+.... .+.|+++|+||+|+.+. ..+++++||++|.|++++|++++
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999987765 57999999999987432 13799999999999999999999
Q ss_pred HHHHH
Q psy17231 153 RQLIL 157 (189)
Q Consensus 153 ~~i~~ 157 (189)
+.+.+
T Consensus 160 ~~~~~ 164 (165)
T cd01865 160 DIICD 164 (165)
T ss_pred HHHHh
Confidence 87754
No 27
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=7.2e-32 Score=192.44 Aligned_cols=149 Identities=33% Similarity=0.499 Sum_probs=131.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
..+||+++|++|||||||++++.+..+...+ .++.+.++....+..++..+.+.+||+||++++...+..+++.+|++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~ 79 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSF--ISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 79 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCccc--ccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEE
Confidence 4589999999999999999999999887655 66777677666777788888999999999999998999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
++|||++++++|+.+..|+..+.+.. .+.|+++|+||.|+... ..+++++||++|.|++++|++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 80 ILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT 159 (167)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988765 57999999999887521 237899999999999999999
Q ss_pred HHHHHHH
Q psy17231 151 IGRQLIL 157 (189)
Q Consensus 151 i~~~i~~ 157 (189)
+++++.+
T Consensus 160 i~~~~~~ 166 (167)
T cd01867 160 LAKDIKK 166 (167)
T ss_pred HHHHHHh
Confidence 9998864
No 28
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=9.8e-32 Score=196.99 Aligned_cols=154 Identities=32% Similarity=0.504 Sum_probs=135.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
..+||+++|++|||||||+++|.+..+...+ .+|++.++....+..++..+.+.+||+||++.+..++..+++.++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 4689999999999999999999998886544 67777777777777788788999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
++|||++++++|+.+..|+..+....+..|+++|+||.|+... ..+++++||++|.||+++|+++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence 9999999999999999999998887778999999999886432 2378999999999999999999
Q ss_pred HHHHHHhhhhh
Q psy17231 152 GRQLILSNRSR 162 (189)
Q Consensus 152 ~~~i~~~~~~~ 162 (189)
++.+.......
T Consensus 163 ~~~~~~~~~~~ 173 (199)
T cd04110 163 TELVLRAKKDN 173 (199)
T ss_pred HHHHHHhhhcc
Confidence 99998765443
No 29
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=6.6e-32 Score=195.20 Aligned_cols=148 Identities=18% Similarity=0.292 Sum_probs=130.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++..+.+...+ .+|++.++....+..++..+.+.+||++|+++|..++..++++++++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~--~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iil 78 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDY--IQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILF 78 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEE
Confidence 58999999999999999999999887654 7888888887888888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccc--------------------cCCceEEeeccCCCCHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN--------------------LISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~--------------------~~~~~~~~Sa~~~~~i~~~ 147 (189)
|||++++++|+.+..|+..+.... ...| |+|+||+|+.. ...++++|||++|.|++++
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999988765 3466 68899999731 1236899999999999999
Q ss_pred HHHHHHHHHHhh
Q psy17231 148 FADIGRQLILSN 159 (189)
Q Consensus 148 ~~~i~~~i~~~~ 159 (189)
|+++.+.+.+..
T Consensus 158 f~~l~~~l~~~~ 169 (182)
T cd04128 158 FKIVLAKAFDLP 169 (182)
T ss_pred HHHHHHHHHhcC
Confidence 999999887543
No 30
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=5.8e-32 Score=200.35 Aligned_cols=151 Identities=20% Similarity=0.356 Sum_probs=129.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
++||+++|++|||||||+++|..+.|...+ .||++.++ ...+..++..+.+.+|||+|+++|..+++.+++.+|+++
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y--~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~il 77 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSY--VPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVL 77 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCcc--CCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEE
Confidence 479999999999999999999999887655 77776444 356677888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccc---------------------------cC-CceEEeec
Q psy17231 88 LVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHN---------------------------LI-SSTYKTSC 138 (189)
Q Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~---------------------------~~-~~~~~~Sa 138 (189)
+|||++++++|+.+ ..|...+....++.|+++|+||+|+.. .. .+|+||||
T Consensus 78 lvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SA 157 (222)
T cd04173 78 ICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSS 157 (222)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCC
Confidence 99999999999999 678877766668899999999999743 11 27999999
Q ss_pred cCCCC-HHHHHHHHHHHHHHhhhh
Q psy17231 139 KTGEG-VEEMFADIGRQLILSNRS 161 (189)
Q Consensus 139 ~~~~~-i~~~~~~i~~~i~~~~~~ 161 (189)
+++.+ |+++|+.++.+.+.+...
T Consensus 158 k~~~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 158 RSSERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred CcCCcCHHHHHHHHHHHHHhccCC
Confidence 99985 999999999988765443
No 31
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=6.2e-32 Score=191.76 Aligned_cols=144 Identities=31% Similarity=0.524 Sum_probs=127.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++..+.+...+ .+|++.++....+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSH--ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFL 78 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEE
Confidence 58999999999999999999999886554 7788777777778888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
|||++++++|+.+..|+..+.... .+.|+++|+||+|+... ..+|++|||++|.|++++|++++
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999988765 47999999999886422 24899999999999999999998
Q ss_pred HH
Q psy17231 153 RQ 154 (189)
Q Consensus 153 ~~ 154 (189)
+.
T Consensus 159 ~~ 160 (161)
T cd04117 159 EL 160 (161)
T ss_pred hh
Confidence 64
No 32
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.6e-31 Score=190.33 Aligned_cols=148 Identities=38% Similarity=0.572 Sum_probs=129.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
.+||+++|++|||||||++++.+..+...+ .+|.+.++....+...+..+.+.+||+||++++...+..+++.+++++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii 79 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 79 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEE
Confidence 479999999999999999999998886544 666666777777777888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
+|||++++++|+++..|+..+.... ++.|+++|+||+|+... ..+++++||++|.|++++|+++
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 80 IVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence 9999999999999999999988765 67999999999886422 2379999999999999999999
Q ss_pred HHHHHH
Q psy17231 152 GRQLIL 157 (189)
Q Consensus 152 ~~~i~~ 157 (189)
++.+.+
T Consensus 160 ~~~~~~ 165 (166)
T cd01869 160 AREIKK 165 (166)
T ss_pred HHHHHh
Confidence 988753
No 33
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.2e-31 Score=193.44 Aligned_cols=150 Identities=31% Similarity=0.487 Sum_probs=128.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC----------CeEEEEEEEeCCCccccccch
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD----------DRSIQMQLWDTGGMERVASIT 76 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~ 76 (189)
+.+||+++|++|||||||++++..+.+...+ .+|++.++....+.+. +..+.+.+||+||++++...+
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKF--ITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccC--CCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence 4689999999999999999999999886655 6677767665555443 356889999999999999999
Q ss_pred HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeecc
Q psy17231 77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCK 139 (189)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~ 139 (189)
..+++.++++++|||++++++|..+..|+..+.... ++.|+++|+||+|+... ..+++++||+
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 999999999999999999999999999999987754 57999999999997431 2378999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy17231 140 TGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 140 ~~~~i~~~~~~i~~~i~~~ 158 (189)
+|.|++++|+++.+.+.++
T Consensus 161 ~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 161 TGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999887653
No 34
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.4e-31 Score=189.91 Aligned_cols=148 Identities=28% Similarity=0.457 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++..+.+.+.. .++.+.+........++..+.+.+|||+|++.|..++..+++.+|++++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQ--LSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEE
Confidence 58999999999999999999998886654 4555556666667777888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------ISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
|||++++.+++.+..|+..+....++.|+++|+||.|+... ..+++++||++|.|++++|+.+++.+.
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999877678999999999996321 247899999999999999999998876
Q ss_pred Hh
Q psy17231 157 LS 158 (189)
Q Consensus 157 ~~ 158 (189)
+.
T Consensus 159 ~~ 160 (161)
T cd04124 159 SY 160 (161)
T ss_pred hc
Confidence 54
No 35
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=8.8e-32 Score=193.28 Aligned_cols=144 Identities=25% Similarity=0.392 Sum_probs=123.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
.+|++++|++|||||||+.++..+.+...+ .+|++ +.+...+..++..+.+.+|||+|++++..++..+++.+|+++
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 77 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcC--CCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEE
Confidence 479999999999999999999999886655 56654 444455667888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEEeec
Q psy17231 88 LVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYKTSC 138 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~~Sa 138 (189)
+|||++++++|+++. .|+..+....++.|+++|+||+|+... . .+|++|||
T Consensus 78 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 157 (174)
T cd01871 78 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 157 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecc
Confidence 999999999999995 698888776678999999999987421 1 27899999
Q ss_pred cCCCCHHHHHHHHHHH
Q psy17231 139 KTGEGVEEMFADIGRQ 154 (189)
Q Consensus 139 ~~~~~i~~~~~~i~~~ 154 (189)
++|.|++++|+.+++.
T Consensus 158 ~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 158 LTQKGLKTVFDEAIRA 173 (174)
T ss_pred cccCCHHHHHHHHHHh
Confidence 9999999999998864
No 36
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=9.6e-32 Score=195.54 Aligned_cols=148 Identities=25% Similarity=0.347 Sum_probs=126.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
.||+++|++|||||||+++|..+.+...+ .+|++..+ ...+..++..+.+++||++|++++..++..+++.++++++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~il 77 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVY--EPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIML 77 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCcc--CCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEE
Confidence 48999999999999999999999886654 56665443 3445567777899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc----------------------------CCceEEeecc
Q psy17231 89 VFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL----------------------------ISSTYKTSCK 139 (189)
Q Consensus 89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------------~~~~~~~Sa~ 139 (189)
|||++++++|+.+. .|+..+....++.|+++|+||+|+... ..+|++|||+
T Consensus 78 v~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 157 (189)
T cd04134 78 CFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence 99999999999985 699988877678999999999997431 1368999999
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q psy17231 140 TGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 140 ~~~~i~~~~~~i~~~i~~~~ 159 (189)
+|.|++++|+++++.+....
T Consensus 158 ~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 158 LNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred cCCCHHHHHHHHHHHHhccc
Confidence 99999999999999887443
No 37
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=2.3e-31 Score=188.68 Aligned_cols=145 Identities=32% Similarity=0.633 Sum_probs=133.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (189)
||+++|++|||||||+++|.++.+...+ .+|.+.+.....+..++..+.+.+||++|++++..++..+++.++++++|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~ 78 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENY--IPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIV 78 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSS--ETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccc--cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999987655 77888899899999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhCC-CCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHHH
Q psy17231 90 FSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIGR 153 (189)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~~ 153 (189)
||++++++|+.+..|+..+....+ +.|++||+||+|+... ..+|+++||+++.|+.++|..+++
T Consensus 79 fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 79 FDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999999999885 7999999999886641 239999999999999999999999
Q ss_pred HHH
Q psy17231 154 QLI 156 (189)
Q Consensus 154 ~i~ 156 (189)
.++
T Consensus 159 ~i~ 161 (162)
T PF00071_consen 159 KIL 161 (162)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 38
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.7e-31 Score=189.37 Aligned_cols=145 Identities=31% Similarity=0.495 Sum_probs=125.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
.+||+++|++|||||||++++..+.+...+ .+|++ +.....+..++..+.+.+||+||+++|..++..+++.+++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 77 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKY--DPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFV 77 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCccc--CCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEE
Confidence 379999999999999999999988876554 55554 445566777888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
+|||++++++|+.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|++++|++
T Consensus 78 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04136 78 LVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFAD 157 (163)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 9999999999999999999887754 57999999999986421 237899999999999999999
Q ss_pred HHHHH
Q psy17231 151 IGRQL 155 (189)
Q Consensus 151 i~~~i 155 (189)
+++.+
T Consensus 158 l~~~~ 162 (163)
T cd04136 158 LVRQI 162 (163)
T ss_pred HHHhc
Confidence 98764
No 39
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.2e-31 Score=189.34 Aligned_cols=146 Identities=29% Similarity=0.501 Sum_probs=130.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++.+..+...+ .++++.++....+..++..+.+++||++|++++..++..+++.++++++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKY--LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLL 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEE
Confidence 58999999999999999999999987654 7788878877788888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC------CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA------ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~------~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~ 147 (189)
|||++++++|+.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|++++
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 158 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEM 158 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999999988764 36999999999997511 237899999999999999
Q ss_pred HHHHHHHHH
Q psy17231 148 FADIGRQLI 156 (189)
Q Consensus 148 ~~~i~~~i~ 156 (189)
|+++++.+.
T Consensus 159 ~~~l~~~l~ 167 (168)
T cd04119 159 FQTLFSSIV 167 (168)
T ss_pred HHHHHHHHh
Confidence 999998875
No 40
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.4e-31 Score=189.27 Aligned_cols=146 Identities=30% Similarity=0.541 Sum_probs=127.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
+.+||+++|++|+|||||++++..+.+.... .++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 79 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQ--GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGA 79 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccC--CCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEE
Confidence 4689999999999999999999988886555 56666677677777888778999999999999998899999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc----------------CCceEEeeccCCCCHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
++|||++++++|+.+..|+..+.... .++|+++|+||+|+... ...++++||++|.|++++|+
T Consensus 80 llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 80 IIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred EEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 99999999999999999999998764 67999999999997422 12689999999999999999
Q ss_pred HHHHH
Q psy17231 150 DIGRQ 154 (189)
Q Consensus 150 ~i~~~ 154 (189)
++.+.
T Consensus 160 ~l~~~ 164 (165)
T cd01864 160 LMATE 164 (165)
T ss_pred HHHHh
Confidence 99865
No 41
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.5e-31 Score=188.98 Aligned_cols=146 Identities=27% Similarity=0.410 Sum_probs=125.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
++||+++|++|||||||++++..+.+...+ .+|++..+ ...+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY--DPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFV 77 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEE
Confidence 479999999999999999999988776554 56665333 456677787889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
+|||++++++|+.+..|+..+.... ++.|+++|+||+|+... ..+++++||++|.|++++|++
T Consensus 78 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 157 (164)
T cd04175 78 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYD 157 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 9999999999999999999987754 68999999999887421 248999999999999999999
Q ss_pred HHHHHH
Q psy17231 151 IGRQLI 156 (189)
Q Consensus 151 i~~~i~ 156 (189)
+++.+.
T Consensus 158 l~~~l~ 163 (164)
T cd04175 158 LVRQIN 163 (164)
T ss_pred HHHHhh
Confidence 988764
No 42
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2e-31 Score=194.86 Aligned_cols=143 Identities=25% Similarity=0.467 Sum_probs=128.8
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCC
Q psy17231 14 CGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLD 93 (189)
Q Consensus 14 ~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 93 (189)
+|++|||||||++++..+.+...+ .+|++.++....+..++..+.+.+||++|+++|..++..+++.++++++|||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~--~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCC--CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECC
Confidence 699999999999999988876544 778888888888888888899999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231 94 NAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 94 ~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
++.+|+.+..|+..+.+..+++|+++|+||+|+... ...|++|||++|.||+++|+++++.+.+.
T Consensus 79 ~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 79 ARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999887778999999999996321 23899999999999999999999988764
No 43
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=3.7e-31 Score=189.37 Aligned_cols=146 Identities=32% Similarity=0.519 Sum_probs=128.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (189)
||+++|++|||||||++++.++.+...+ .+|++.++....+..++..+.+++||+||+++|..++..+++.+|++++|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNY--KATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEE
Confidence 7999999999999999999999887655 77888787777778888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc-----------------CCceEEeeccCCCCHHHHHHH
Q psy17231 90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL-----------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~-----------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
||++++++++.+..|+..+.+.. ...|+++|+||.|+... ..+|+++||++|.|++++|+.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~ 159 (170)
T cd04108 80 FDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFR 159 (170)
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999987653 35789999999886321 237899999999999999999
Q ss_pred HHHHHHH
Q psy17231 151 IGRQLIL 157 (189)
Q Consensus 151 i~~~i~~ 157 (189)
+++.+.+
T Consensus 160 l~~~~~~ 166 (170)
T cd04108 160 VAALTFE 166 (170)
T ss_pred HHHHHHH
Confidence 9888754
No 44
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=3.2e-31 Score=196.45 Aligned_cols=148 Identities=29% Similarity=0.443 Sum_probs=129.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECC-eEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD-RSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
+||+++|++|||||||+++|.+..+...+ .+|++.++....+.+++ ..+.+.+||++|++.+..++..+++.+|+++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~--~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~ii 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSY--KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVF 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEE
Confidence 58999999999999999999998886555 77888888777777754 5789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
+|||++++++|+.+..|+..+.... .++|+++|+||.|+... ..+++++||++|.|++++|
T Consensus 79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf 158 (215)
T cd04109 79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLF 158 (215)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999999999988764 35789999999997521 2368999999999999999
Q ss_pred HHHHHHHHHh
Q psy17231 149 ADIGRQLILS 158 (189)
Q Consensus 149 ~~i~~~i~~~ 158 (189)
+++++.+...
T Consensus 159 ~~l~~~l~~~ 168 (215)
T cd04109 159 QQLAAELLGV 168 (215)
T ss_pred HHHHHHHHhc
Confidence 9999998765
No 45
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=9.8e-31 Score=193.91 Aligned_cols=152 Identities=32% Similarity=0.499 Sum_probs=135.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
..+||+++|++|||||||+++|.+..+...+ .+|++.++....+.+++..+.+.+||++|++++..++..+++.++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~--~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLES--KSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 4689999999999999999999998876544 67888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
++|||++++++|+.+..|+..+.... .+.|+++|+||+|+.+. ..+++++||++|.|++++|++
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988765 57999999999996432 237999999999999999999
Q ss_pred HHHHHHHhhh
Q psy17231 151 IGRQLILSNR 160 (189)
Q Consensus 151 i~~~i~~~~~ 160 (189)
+++.+.+...
T Consensus 169 l~~~i~~~~~ 178 (216)
T PLN03110 169 ILLEIYHIIS 178 (216)
T ss_pred HHHHHHHHhh
Confidence 9999877543
No 46
>PLN03108 Rab family protein; Provisional
Probab=99.98 E-value=1.3e-30 Score=192.41 Aligned_cols=152 Identities=30% Similarity=0.444 Sum_probs=133.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
..+||+++|++|||||||+++|....+...+ .+|++.++....+.+++..+.+.+||++|++.+..++..+++.+|++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~--~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 4689999999999999999999998886554 66777788777788888888999999999999998999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
++|||++++++|+.+..|+..+.... +..|+++|+||+|+... ..+++++||+++.|++++|++
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998877654 67999999999987431 237899999999999999999
Q ss_pred HHHHHHHhhh
Q psy17231 151 IGRQLILSNR 160 (189)
Q Consensus 151 i~~~i~~~~~ 160 (189)
+++.+.+...
T Consensus 163 l~~~~~~~~~ 172 (210)
T PLN03108 163 TAAKIYKKIQ 172 (210)
T ss_pred HHHHHHHHhh
Confidence 9999887643
No 47
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.98 E-value=8.2e-31 Score=186.42 Aligned_cols=146 Identities=36% Similarity=0.570 Sum_probs=128.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
.+||+++|++|||||||++++....+...+ .++.+.++....+..++..+.+.+||+||++++..++..+++.+++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS--KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 479999999999999999999988876555 667777777777888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
+|||++++++|+.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999988876 46999999999886432 2379999999999999999999
Q ss_pred HHHH
Q psy17231 152 GRQL 155 (189)
Q Consensus 152 ~~~i 155 (189)
++.+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 8765
No 48
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=9e-31 Score=190.22 Aligned_cols=149 Identities=37% Similarity=0.557 Sum_probs=130.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++.++.+...+ .+|.+.+.....+..++..+.+.+||++|++++...+..+++.++++++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iil 78 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSEST--KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLL 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEE
Confidence 58999999999999999999999886544 6777767766777777878899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
|||++++++|+.+..|+..+.... .+.|+++|+||.|+.+. ..+++++||++|.|++++|++++
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999988765 56899999999986521 23799999999999999999999
Q ss_pred HHHHHhh
Q psy17231 153 RQLILSN 159 (189)
Q Consensus 153 ~~i~~~~ 159 (189)
+.+.+..
T Consensus 159 ~~~~~~~ 165 (188)
T cd04125 159 KLIIKRL 165 (188)
T ss_pred HHHHHHh
Confidence 9987653
No 49
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.98 E-value=6.2e-31 Score=186.34 Aligned_cols=144 Identities=35% Similarity=0.547 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++.+..+.... .++.+.+.....+..++..+.+.+||+||++++...+..+++.++++++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDS--QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999999886655 5566666766777778888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
|||++++++|..+..|+..+.... ++.|+++|+||.|+... ..+++++||+++.|++++|++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999887654 78999999999887432 24899999999999999999998
Q ss_pred HH
Q psy17231 153 RQ 154 (189)
Q Consensus 153 ~~ 154 (189)
+.
T Consensus 159 ~~ 160 (161)
T cd04113 159 RS 160 (161)
T ss_pred Hh
Confidence 75
No 50
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=8e-31 Score=193.69 Aligned_cols=152 Identities=32% Similarity=0.496 Sum_probs=131.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE-CCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV-DDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
+.+||+++|++|||||||+++|.+..+...+ .+|++.++....+.. ++..+.+++||++|++.+..++..+++.+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~--~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 78 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVS--DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVG 78 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcE
Confidence 3589999999999999999999998886654 677777877777766 4567899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
+++|||++++++|+.+..|+..+.... ..+|+++|+||.|+... ..+|+++||++|.|++++|
T Consensus 79 iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f 158 (211)
T cd04111 79 VLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAF 158 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999999987764 45789999999987431 2379999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy17231 149 ADIGRQLILSNR 160 (189)
Q Consensus 149 ~~i~~~i~~~~~ 160 (189)
+++++.+.+...
T Consensus 159 ~~l~~~~~~~~~ 170 (211)
T cd04111 159 ELLTQEIYERIK 170 (211)
T ss_pred HHHHHHHHHHhh
Confidence 999998876643
No 51
>KOG0095|consensus
Probab=99.98 E-value=1.3e-31 Score=180.27 Aligned_cols=151 Identities=37% Similarity=0.575 Sum_probs=135.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
-+||+++|..|+|||+|+++|..+-|++.. ..|+|+++-.+++..+++++++++|||+|+++|+++.+.+++.+++++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgq--gatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCC--CceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 589999999999999999999999999887 889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccccC---------------CceEEeeccCCCCHHHHHHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLI---------------SSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~---------------~~~~~~Sa~~~~~i~~~~~~i 151 (189)
+|||++.+.+|+-++.|+.++..+. ...--|+|+||.|+..-. +-|.|+||+.-.|++.+|..+
T Consensus 85 lvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~ 164 (213)
T KOG0095|consen 85 LVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDL 164 (213)
T ss_pred EEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHH
Confidence 9999999999999999999999987 556778999997754321 145789999999999999888
Q ss_pred HHHHHHhhh
Q psy17231 152 GRQLILSNR 160 (189)
Q Consensus 152 ~~~i~~~~~ 160 (189)
.-.+....+
T Consensus 165 a~rli~~ar 173 (213)
T KOG0095|consen 165 ACRLISEAR 173 (213)
T ss_pred HHHHHHHHH
Confidence 777665543
No 52
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.98 E-value=8.3e-31 Score=186.04 Aligned_cols=145 Identities=34% Similarity=0.466 Sum_probs=125.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
++||+++|++|||||||++++..+.+.... .+|.+ ++....+..++..+.+.+||+||+++|..++..+++++++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i 77 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKY--DPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 77 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEE
Confidence 479999999999999999999999887654 45554 455566777888888999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
+|||++++++|+++..|+..+.+.. .++|+++|+||+|+... ..+++++||++|.|++++|++
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (163)
T cd04176 78 VVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAE 157 (163)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHH
Confidence 9999999999999999999888764 58999999999986321 237899999999999999999
Q ss_pred HHHHH
Q psy17231 151 IGRQL 155 (189)
Q Consensus 151 i~~~i 155 (189)
+++.+
T Consensus 158 l~~~l 162 (163)
T cd04176 158 IVRQM 162 (163)
T ss_pred HHHhc
Confidence 98754
No 53
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.98 E-value=1.3e-30 Score=186.08 Aligned_cols=148 Identities=31% Similarity=0.471 Sum_probs=129.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
.+||+++|++|||||||++++.+..+.... .++.+.++....+..++....+.+||+||++++..+...+++.+|+++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 489999999999999999999988875554 556666777777788888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
+|||++++++++.+..|+..+.... ++.|+++|+||.|+... ...++++||+++.|++++|+++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999998764 68999999999886421 2378999999999999999999
Q ss_pred HHHHHH
Q psy17231 152 GRQLIL 157 (189)
Q Consensus 152 ~~~i~~ 157 (189)
++.+.+
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988754
No 54
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=8.5e-31 Score=190.11 Aligned_cols=151 Identities=21% Similarity=0.347 Sum_probs=127.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
+||+++|++|||||||+++|.++.+...+ .+|++.++... +... +..+.+.+|||||++++..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 77 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEY--VPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLL 77 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCC--CCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEE
Confidence 48999999999999999999999886554 56665554333 4443 66789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc-------------------CC-ceEEeeccCCCCHHH
Q psy17231 88 LVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL-------------------IS-STYKTSCKTGEGVEE 146 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------~~-~~~~~Sa~~~~~i~~ 146 (189)
+|||++++++|+.+. .|+..+....++.|+++|+||.|+... .. +++++||++|.|+++
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 78 ICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEE 157 (187)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHH
Confidence 999999999999995 688887766678999999999997431 12 789999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q psy17231 147 MFADIGRQLILSNRSR 162 (189)
Q Consensus 147 ~~~~i~~~i~~~~~~~ 162 (189)
+|+.+++.+......+
T Consensus 158 ~f~~l~~~~~~~~~~~ 173 (187)
T cd04132 158 VFDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHHhhhhhh
Confidence 9999999998776555
No 55
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.98 E-value=1.4e-30 Score=192.80 Aligned_cols=146 Identities=29% Similarity=0.446 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|.+|||||||+++|..+.+.. +.+|++.++....+ ..+.+.+||++|++.|..++..+++.++++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~---~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD---TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC---CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEE
Confidence 589999999999999999999998853 25677666544332 35789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccc-------------------c---------------C---
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN-------------------L---------------I--- 130 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~-------------------~---------------~--- 130 (189)
|||++++++|+.+..|+..+.+.. +++|+|+|+||+|+.. . .
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~ 153 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYK 153 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccc
Confidence 999999999999998888777654 6799999999999754 0 1
Q ss_pred -----------CceEEeeccCCCCHHHHHHHHHHHHHHhhhh
Q psy17231 131 -----------SSTYKTSCKTGEGVEEMFADIGRQLILSNRS 161 (189)
Q Consensus 131 -----------~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~ 161 (189)
.+|+||||++|.||+++|+.+++.+......
T Consensus 154 ~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~ 195 (220)
T cd04126 154 MLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILA 195 (220)
T ss_pred cccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2589999999999999999999988765443
No 56
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.98 E-value=9.1e-31 Score=187.11 Aligned_cols=148 Identities=34% Similarity=0.554 Sum_probs=128.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
+...+||+++|++|||||||++++....+.... .++++.++....+..++..+.+.+||+||++++..++..+++.++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d 79 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSD 79 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCc--CCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCC
Confidence 456799999999999999999999988886654 667777777777778888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeeccccccc---------------CCceEEeeccCCCCH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGV 144 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i 144 (189)
++++|||++++++|+.+..|+..+.... .++|+++|+||.|+... ..+++++||++|.|+
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 159 (170)
T cd04116 80 CCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNV 159 (170)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCH
Confidence 9999999999999999999998887643 46899999999886321 137899999999999
Q ss_pred HHHHHHHHHH
Q psy17231 145 EEMFADIGRQ 154 (189)
Q Consensus 145 ~~~~~~i~~~ 154 (189)
+++|+++++.
T Consensus 160 ~~~~~~~~~~ 169 (170)
T cd04116 160 AAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 57
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.98 E-value=9.9e-31 Score=185.34 Aligned_cols=144 Identities=30% Similarity=0.481 Sum_probs=125.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC--CeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD--DRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
+||+++|++|+|||||++++..+.+...+ .+|++.++....+.+. +..+.+++||+||++++..++..+++.++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 78 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDY--KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEE
Confidence 58999999999999999999998886554 6677777766666665 6678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
++|||++++++|+.+..|+..+.....+.|+++|+||.|+... ..+++++||++|.|++++|+++
T Consensus 79 v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 79 ILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999998876678999999999886321 2378999999999999999998
Q ss_pred HHH
Q psy17231 152 GRQ 154 (189)
Q Consensus 152 ~~~ 154 (189)
...
T Consensus 159 ~~~ 161 (162)
T cd04106 159 AEK 161 (162)
T ss_pred HHh
Confidence 753
No 58
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.98 E-value=1.3e-30 Score=184.35 Aligned_cols=145 Identities=26% Similarity=0.419 Sum_probs=123.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
.+||+++|++|||||||++++.++.+...+ .+|.+ +........++..+.+.+||++|++++..++..+++.+++++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i 77 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY--DPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 77 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCc--CCcch-heEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEE
Confidence 379999999999999999999998876554 55554 333555667777788999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
+|||++++++|+.+..|+..+.+.. .+.|+++|+||+|+... ..+++++||++|.|++++|+++
T Consensus 78 ~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 78 CVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999999888764 57999999999996431 2379999999999999999999
Q ss_pred HHHH
Q psy17231 152 GRQL 155 (189)
Q Consensus 152 ~~~i 155 (189)
++.+
T Consensus 158 ~~~~ 161 (162)
T cd04138 158 VREI 161 (162)
T ss_pred HHHh
Confidence 8654
No 59
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.98 E-value=9.3e-31 Score=190.50 Aligned_cols=148 Identities=23% Similarity=0.358 Sum_probs=125.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (189)
||+++|++|||||||+++|..+.+...+ .+|++.. .......++..+.+.+||+||+++|..++..+++.+|++++|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~--~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 77 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETY--DPTIEDS-YRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILV 77 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC--CCchHhh-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEE
Confidence 6899999999999999999988886544 5665533 344456677778899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 90 FSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
||++++++|+.+..|+..+.... .+.|+++|+||+|+... ..+|+++||++|.|++++|++
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~ 157 (190)
T cd04144 78 YSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYT 157 (190)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999998887653 47899999999997321 237999999999999999999
Q ss_pred HHHHHHHhhh
Q psy17231 151 IGRQLILSNR 160 (189)
Q Consensus 151 i~~~i~~~~~ 160 (189)
+++.+.+.+.
T Consensus 158 l~~~l~~~~~ 167 (190)
T cd04144 158 LVRALRQQRQ 167 (190)
T ss_pred HHHHHHHhhc
Confidence 9998865543
No 60
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=1e-30 Score=187.40 Aligned_cols=144 Identities=26% Similarity=0.455 Sum_probs=123.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEE
Q psy17231 11 VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVF 90 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (189)
|+++|++|||||||++++..+.+...+ .++.+ +.....+..++..+.+.+|||||++++..++..+++.+|++++||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 77 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDY--VPTVF-ENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICF 77 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCC--CCcEE-eeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEE
Confidence 589999999999999999999886554 45554 333445667788889999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeecccccc---------------------------cC-CceEEeeccCC
Q psy17231 91 SLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHN---------------------------LI-SSTYKTSCKTG 141 (189)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~---------------------------~~-~~~~~~Sa~~~ 141 (189)
|++++++|+.+. .|+..+....++.|+++|+||+|+.. .. .+|++|||++|
T Consensus 78 d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 157 (174)
T smart00174 78 SVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQ 157 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCC
Confidence 999999999995 69999888778899999999999753 11 27899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy17231 142 EGVEEMFADIGRQLIL 157 (189)
Q Consensus 142 ~~i~~~~~~i~~~i~~ 157 (189)
.|++++|+.+++.+.+
T Consensus 158 ~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 158 EGVREVFEEAIRAALN 173 (174)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 9999999999988753
No 61
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.98 E-value=1.7e-30 Score=184.50 Aligned_cols=145 Identities=26% Similarity=0.438 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++.+..+.... .+|.+ +........++..+.+.+||+||++++..++..+++.++++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 77 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDY--DPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccc--CCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEE
Confidence 58999999999999999999998876554 44443 4445566677778899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
|||++++++|+.+..|+..+.+.. .+.|+++|+||+|+... ..+++++||++|.|++++|+++
T Consensus 78 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 157 (164)
T smart00173 78 VYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL 157 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHH
Confidence 999999999999999998887754 47899999999986431 2379999999999999999999
Q ss_pred HHHHH
Q psy17231 152 GRQLI 156 (189)
Q Consensus 152 ~~~i~ 156 (189)
++.+.
T Consensus 158 ~~~~~ 162 (164)
T smart00173 158 VREIR 162 (164)
T ss_pred HHHHh
Confidence 98765
No 62
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.9e-30 Score=188.99 Aligned_cols=152 Identities=36% Similarity=0.553 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++....+... .+.+|++.++....+.+++..+.+.+||+||++++...+..+++.++++++
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG-NFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc-CcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence 5899999999999999999998887532 235666667666667778888999999999999998888999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
|||++++++|+++..|+..+.... .++|+++|+||.|+... ..+|+++||++|.|++++|++++
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999988876 57999999999997421 23799999999999999999999
Q ss_pred HHHHHhhhh
Q psy17231 153 RQLILSNRS 161 (189)
Q Consensus 153 ~~i~~~~~~ 161 (189)
+.+.+....
T Consensus 160 ~~~~~~~~~ 168 (191)
T cd04112 160 KELKHRKYE 168 (191)
T ss_pred HHHHHhccc
Confidence 998776533
No 63
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=3.8e-30 Score=187.62 Aligned_cols=150 Identities=31% Similarity=0.578 Sum_probs=130.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||+++|..+.+.. ..+.+|++.++....+..++..+.+.+||++|++++..++..+++.++++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLV-GPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCC-cCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 489999999999999999999988763 2336777777777778888888999999999999999899999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------------CCceEEeeccCCCCHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
|||++++++|+.+..|+..+....++.|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999998876668999999999996421 13679999999999999999
Q ss_pred HHHHHHHHhh
Q psy17231 150 DIGRQLILSN 159 (189)
Q Consensus 150 ~i~~~i~~~~ 159 (189)
++.+.+.+..
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999987644
No 64
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=3.5e-30 Score=184.28 Aligned_cols=146 Identities=30% Similarity=0.522 Sum_probs=127.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc-cchHHHhcCCcEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA-SITSSYYKFAEAA 86 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~ 86 (189)
.+||+++|++|||||||++++....+...+ .++++.++....+..++..+.+.+||++|++++. .++..+++.+|++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~ 79 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERT--EATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAV 79 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcc--ccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEE
Confidence 579999999999999999999998886554 6777777777788888888999999999998886 5788889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccC---CCCHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKT---GEGVEE 146 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~---~~~i~~ 146 (189)
++|||++++++|+.+..|+..+.... .++|+++|+||+|+.+. ..+|+++||++ +.++++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~ 159 (170)
T cd04115 80 VFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEA 159 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHH
Confidence 99999999999999999999988764 67999999999886422 23799999999 899999
Q ss_pred HHHHHHHHH
Q psy17231 147 MFADIGRQL 155 (189)
Q Consensus 147 ~~~~i~~~i 155 (189)
+|..+++.+
T Consensus 160 ~f~~l~~~~ 168 (170)
T cd04115 160 IFMTLAHKL 168 (170)
T ss_pred HHHHHHHHh
Confidence 999998765
No 65
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=3e-30 Score=183.68 Aligned_cols=142 Identities=27% Similarity=0.347 Sum_probs=119.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++.++.+...+ .++.+ ..+......+...+.+.+||++|+++|..++..+++.++++++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 78 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESY--IPTIE-DTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCcch-heEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEE
Confidence 79999999999999999999999886554 55554 2234445566677899999999999999988899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
|||++++++|+++..|+..+.+.. +++|+++|+||+|+.+. ..+|++|||++|.|++++|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~ 158 (165)
T cd04140 79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQ 158 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Confidence 999999999999999988776643 57999999999997431 23789999999999999999
Q ss_pred HHHH
Q psy17231 150 DIGR 153 (189)
Q Consensus 150 ~i~~ 153 (189)
++++
T Consensus 159 ~l~~ 162 (165)
T cd04140 159 ELLN 162 (165)
T ss_pred HHHh
Confidence 9875
No 66
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=4.1e-30 Score=182.44 Aligned_cols=146 Identities=25% Similarity=0.449 Sum_probs=123.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
+.+||+++|++|+|||||++++....+.... .++.+ +........++..+.+.+||+||++++..++..+++.++++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 77 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDY--DPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGF 77 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCccc--CCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEE
Confidence 4589999999999999999999988775444 45554 33344556777778999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
++|||++++++|+.+..|+..+.+.. .+.|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 78 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 157 (164)
T cd04145 78 LLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFH 157 (164)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHH
Confidence 99999999999999999999888753 57999999999986421 23889999999999999999
Q ss_pred HHHHHH
Q psy17231 150 DIGRQL 155 (189)
Q Consensus 150 ~i~~~i 155 (189)
++++.+
T Consensus 158 ~l~~~~ 163 (164)
T cd04145 158 DLVRVI 163 (164)
T ss_pred HHHHhh
Confidence 998764
No 67
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=4.4e-30 Score=187.87 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------hHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI--------TSSYY 80 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 80 (189)
+||+++|++|||||||++++.++.+...+ .+|.+.+.+...+.+++..+.+++|||||...+... ....+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~--~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~ 78 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEY--IPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL 78 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCccc--CCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhh
Confidence 58999999999999999999999886654 666665665566677888899999999997655321 23447
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeecccccc----------------cCCceEEeeccC
Q psy17231 81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHN----------------LISSTYKTSCKT 140 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~----------------~~~~~~~~Sa~~ 140 (189)
+.+|++++|||++++++|+.+..|+..+.+.. .++|+++|+||+|+.. ...+|++|||++
T Consensus 79 ~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~ 158 (198)
T cd04142 79 RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKY 158 (198)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCC
Confidence 89999999999999999999999999887753 5799999999988732 134789999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhh
Q psy17231 141 GEGVEEMFADIGRQLILSNRS 161 (189)
Q Consensus 141 ~~~i~~~~~~i~~~i~~~~~~ 161 (189)
|.|++++|+.+++.+......
T Consensus 159 g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 159 NWHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCCHHHHHHHHHHHhhccCCC
Confidence 999999999999988766543
No 68
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=9.4e-30 Score=180.48 Aligned_cols=147 Identities=41% Similarity=0.645 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++.+..+.... .++.+.+.....+..++..+.+.+||+||++.+......+++.+|++++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~il 78 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQY--KSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALL 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEE
Confidence 58999999999999999999988875444 5666667767777788878899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
|||++++++++.+..|+..+.... +++|+++|+||+|+.+. ..+++++||++|.|++++|+++.
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999988876 68999999999886531 23789999999999999999999
Q ss_pred HHHHH
Q psy17231 153 RQLIL 157 (189)
Q Consensus 153 ~~i~~ 157 (189)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T smart00175 159 REILK 163 (164)
T ss_pred HHHhh
Confidence 88754
No 69
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=1.3e-29 Score=181.10 Aligned_cols=149 Identities=34% Similarity=0.551 Sum_probs=129.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++.+..+.... .++++.++....+...+..+.+.+||+||++.+..++..+++.++++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVL 78 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCc--CCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEE
Confidence 58999999999999999999998875544 5666667766777788888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeecccccc--c--------------CCceEEeeccCCCCHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHN--L--------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~--~--------------~~~~~~~Sa~~~~~i~~~ 147 (189)
|||++++++++++..|...+.... .++|+++|+||+|+.. . ..+++++||++|.|++++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence 999999999999999988776654 2799999999998852 1 137999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy17231 148 FADIGRQLILSN 159 (189)
Q Consensus 148 ~~~i~~~i~~~~ 159 (189)
|+++++.+.+..
T Consensus 159 ~~~i~~~~~~~~ 170 (172)
T cd01862 159 FETIARKALEQE 170 (172)
T ss_pred HHHHHHHHHhcc
Confidence 999999887663
No 70
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=9.3e-30 Score=180.16 Aligned_cols=144 Identities=31% Similarity=0.570 Sum_probs=126.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++.+..+.... .++.+.++....+..++..+.+.+||+||+.++...+..+++.++++++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~ 78 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQY--QATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccC--CCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 48999999999999999999998886654 6666667777777788877899999999999999899999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
|||++++++|+.+..|+..+.... .+.|+++|+||.|+.+. ..+++++||+++.|++++|+++.
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999887665 36999999999887321 23789999999999999999997
Q ss_pred HH
Q psy17231 153 RQ 154 (189)
Q Consensus 153 ~~ 154 (189)
+.
T Consensus 159 ~~ 160 (161)
T cd01861 159 SA 160 (161)
T ss_pred Hh
Confidence 65
No 71
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=1.4e-29 Score=179.64 Aligned_cols=146 Identities=34% Similarity=0.563 Sum_probs=128.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
.+||+++|++|||||||++++.+..+.... .++.+..+....+.+++..+.+.+||+||++++...+..+++++++++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 78 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQ--ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAI 78 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEE
Confidence 479999999999999999999999886544 666666677777888888899999999999999888899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
+|||++++++++....|+..+.... +..|+++++||.|+... ..+++++||++|.|++++|+++
T Consensus 79 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 79 VVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999988776 67999999999886521 2378999999999999999999
Q ss_pred HHHH
Q psy17231 152 GRQL 155 (189)
Q Consensus 152 ~~~i 155 (189)
++.+
T Consensus 159 ~~~l 162 (163)
T cd01860 159 AKKL 162 (163)
T ss_pred HHHh
Confidence 8875
No 72
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=8.8e-30 Score=182.67 Aligned_cols=142 Identities=26% Similarity=0.378 Sum_probs=121.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+|++++|++|+|||||++++.++.+...+ .+|. .+.....+..++..+.+.+||+||++++..++..+++.+|++++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~--~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~ 77 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEY--VPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLL 77 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEE
Confidence 58999999999999999999988886654 4554 35555567777878899999999999999999999999999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc----------------------------CCceEEeecc
Q psy17231 89 VFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL----------------------------ISSTYKTSCK 139 (189)
Q Consensus 89 v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------------~~~~~~~Sa~ 139 (189)
|||++++++|+.+ ..|+..+....+++|+++|+||.|+... ..+|+++||+
T Consensus 78 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~ 157 (173)
T cd04130 78 CFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSAL 157 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCC
Confidence 9999999999998 4799888766568999999999987431 1379999999
Q ss_pred CCCCHHHHHHHHHH
Q psy17231 140 TGEGVEEMFADIGR 153 (189)
Q Consensus 140 ~~~~i~~~~~~i~~ 153 (189)
+|.|++++|+.++.
T Consensus 158 ~~~~v~~lf~~~~~ 171 (173)
T cd04130 158 TQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999998764
No 73
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=1.6e-29 Score=180.52 Aligned_cols=146 Identities=28% Similarity=0.492 Sum_probs=125.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
.+||+++|++|||||||++++.++.+...+ .++.+. ........++..+.+.+||+||+++|..++..+++.+++++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~--~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~v 77 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESY--DPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFL 77 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEE
Confidence 479999999999999999999988886554 556553 33556677777889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC----------------CceEEeeccCCCCHHHHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI----------------SSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~----------------~~~~~~Sa~~~~~i~~~~~ 149 (189)
+|||++++++++.+..|...+.+.. .+.|+++++||.|+.... .+++++||++|.|++++|+
T Consensus 78 lv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~ 157 (168)
T cd04177 78 LVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFI 157 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHH
Confidence 9999999999999999999887643 579999999998864321 3799999999999999999
Q ss_pred HHHHHHH
Q psy17231 150 DIGRQLI 156 (189)
Q Consensus 150 ~i~~~i~ 156 (189)
++++.+.
T Consensus 158 ~i~~~~~ 164 (168)
T cd04177 158 DLVRQII 164 (168)
T ss_pred HHHHHHh
Confidence 9998664
No 74
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=5.9e-30 Score=186.69 Aligned_cols=145 Identities=25% Similarity=0.332 Sum_probs=113.9
Q ss_pred ceEEEEEcCCCCCHHHHHH-HHHhCCCCC---CCCCccccee-eeeEEE--------EEECCeEEEEEEEeCCCcccccc
Q psy17231 8 EQKVILCGEYGVGKSSLFR-RYAYDTFIS---SSSRKSTLGL-DNFNKE--------YKVDDRSIQMQLWDTGGMERVAS 74 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~-~l~~~~~~~---~~~~~~t~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 74 (189)
.+||+++|++|||||||+. ++.++.+.. ...+.||++. +.+... ...++..+.+++|||+|+++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999995 565443321 1233667652 322222 246788899999999998753
Q ss_pred chHHHhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeecccccc-------------------------
Q psy17231 75 ITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHN------------------------- 128 (189)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~------------------------- 128 (189)
+...+++.++++++|||++++++|+.+. .|+..+....++.|+++|+||+|+..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 4556789999999999999999999996 69998877667899999999999753
Q ss_pred ---------cCCceEEeeccCCCCHHHHHHHHHHH
Q psy17231 129 ---------LISSTYKTSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 129 ---------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 154 (189)
...+|+||||++|.||+++|+.++++
T Consensus 160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 12379999999999999999998864
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=1.7e-29 Score=179.40 Aligned_cols=145 Identities=27% Similarity=0.412 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD--TFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~--~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
+||+++|++|||||||++++..+ .+...+ .+|.+.+......... +..+++.+||+||++.+..++..++..+|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNY--LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccC--CCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCE
Confidence 48999999999999999999865 454443 7777777766666554 567899999999999888888999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
+++|||++++++|+++..|+..+.....+.|+++|+||+|+... ..+++++||++|.|++++|+.
T Consensus 79 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 158 (164)
T cd04101 79 FILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES 158 (164)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence 99999999999999999999998877667999999999886321 237899999999999999999
Q ss_pred HHHHH
Q psy17231 151 IGRQL 155 (189)
Q Consensus 151 i~~~i 155 (189)
+.+.+
T Consensus 159 l~~~~ 163 (164)
T cd04101 159 LARAF 163 (164)
T ss_pred HHHHh
Confidence 98865
No 76
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=1.5e-29 Score=190.64 Aligned_cols=144 Identities=23% Similarity=0.353 Sum_probs=124.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++..+.+...+ .+|++ ++....+.+++..+.+.+|||+|++.|..++..++..+|++++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y--~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIl 77 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQY--TPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFIL 77 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 58999999999999999999999887644 66665 5666677888888999999999999998888888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHh----------CCCCcEEEEeeccccccc----------------CCceEEeeccCCC
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTY----------AENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGE 142 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~----------~~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~ 142 (189)
|||++++++|+++..|+..+... ..+.|+|+|+||+|+... ...++++||++|.
T Consensus 78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~ 157 (247)
T cd04143 78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNS 157 (247)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence 99999999999999999988753 147999999999997521 1368999999999
Q ss_pred CHHHHHHHHHHHH
Q psy17231 143 GVEEMFADIGRQL 155 (189)
Q Consensus 143 ~i~~~~~~i~~~i 155 (189)
|++++|+++....
T Consensus 158 gI~elf~~L~~~~ 170 (247)
T cd04143 158 NLDEMFRALFSLA 170 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999865
No 77
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=2e-29 Score=180.77 Aligned_cols=144 Identities=24% Similarity=0.374 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|+|||||++++..+.+...+ .++.+ +.....+..++..+.+.+||+||++.+...+..+++.++++++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 77 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEY--VPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEE
Confidence 58999999999999999999998886554 45543 3444456777878889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEEeecc
Q psy17231 89 VFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYKTSCK 139 (189)
Q Consensus 89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~~Sa~ 139 (189)
|||++++++|+.+. .|+..+....++.|+++|+||.|+... . .+|++|||+
T Consensus 78 v~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 157 (174)
T cd04135 78 CFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL 157 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 99999999999995 688887766678999999999886421 1 268999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy17231 140 TGEGVEEMFADIGRQL 155 (189)
Q Consensus 140 ~~~~i~~~~~~i~~~i 155 (189)
+|.|++++|+.+++++
T Consensus 158 ~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 158 TQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999998875
No 78
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=7.9e-30 Score=182.16 Aligned_cols=141 Identities=16% Similarity=0.332 Sum_probs=116.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
++.+||+++|++|||||||++++....+.. +.+|++.++.. +.. ..+.+++||++|++++...+..++..+|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~---~~~t~g~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ 79 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQG 79 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc---ccCCcccceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 567999999999999999999998777642 25676665532 222 35789999999999998899999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~ 145 (189)
+++|||++++.+|+++..|+..+.... .++|+++|+||+|+... ...++++||++|.|++
T Consensus 80 ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 80 LIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 999999999999999988887776532 57999999999996421 1157899999999999
Q ss_pred HHHHHHHH
Q psy17231 146 EMFADIGR 153 (189)
Q Consensus 146 ~~~~~i~~ 153 (189)
++|++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999864
No 79
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=2.3e-29 Score=180.57 Aligned_cols=145 Identities=26% Similarity=0.419 Sum_probs=122.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
+.||+++|++|||||||++++....+...+ .+|.+... ...+.+++..+.+.+|||+|++++...+...+.++|+++
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 77 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEE
Confidence 368999999999999999999998886554 55655333 345667777889999999999999888888899999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc----------------------------CCceEEeec
Q psy17231 88 LVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL----------------------------ISSTYKTSC 138 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------------~~~~~~~Sa 138 (189)
+|||++++++|+.+. .|+..+....++.|+++|+||+|+... ..++++|||
T Consensus 78 ~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 157 (175)
T cd01870 78 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSA 157 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecc
Confidence 999999999999984 688888776678999999999996431 126899999
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy17231 139 KTGEGVEEMFADIGRQL 155 (189)
Q Consensus 139 ~~~~~i~~~~~~i~~~i 155 (189)
++|.|++++|+++++++
T Consensus 158 ~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 158 KTKEGVREVFEMATRAA 174 (175)
T ss_pred ccCcCHHHHHHHHHHHh
Confidence 99999999999998764
No 80
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=2.4e-29 Score=177.90 Aligned_cols=137 Identities=27% Similarity=0.465 Sum_probs=114.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++..+.|.... .++ +..+ ...+..++..+.+.+||++|++. ..+++.+|++++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~--~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~il 71 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLE--SPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIF 71 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCC--CCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEE
Confidence 48999999999999999999988886554 333 2233 45677888888999999999965 356788999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccc-----------------c-CCceEEeeccCCCCHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHN-----------------L-ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~-----------------~-~~~~~~~Sa~~~~~i~~~~ 148 (189)
|||++++++|+++..|+..+.... ++.|+++|+||+|+.. . ...|++|||++|.||+++|
T Consensus 72 v~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 72 VFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVF 151 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHH
Confidence 999999999999999999998775 6789999999988531 1 2489999999999999999
Q ss_pred HHHHHH
Q psy17231 149 ADIGRQ 154 (189)
Q Consensus 149 ~~i~~~ 154 (189)
+.+++.
T Consensus 152 ~~~~~~ 157 (158)
T cd04103 152 QEAAQK 157 (158)
T ss_pred HHHHhh
Confidence 998764
No 81
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=1.4e-29 Score=181.98 Aligned_cols=144 Identities=17% Similarity=0.355 Sum_probs=119.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
++.+||+++|++|||||||++++..+.+.. +.+|++.+... +.. ..+.+.+||+||++.+..++..+++++++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~---~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ 83 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVT---TIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQG 83 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCC---cCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 457999999999999999999998777642 36777766543 233 24789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVE 145 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~ 145 (189)
+++|||+++++++++...|+..+.... ++.|+++|+||+|+.+.. ..++++||++|.|++
T Consensus 84 ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 84 LIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 999999999999999998988876542 579999999999975321 035689999999999
Q ss_pred HHHHHHHHHHH
Q psy17231 146 EMFADIGRQLI 156 (189)
Q Consensus 146 ~~~~~i~~~i~ 156 (189)
++|+|+.+.+.
T Consensus 164 e~~~~l~~~~~ 174 (175)
T smart00177 164 EGLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHHhc
Confidence 99999987653
No 82
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.7e-29 Score=179.56 Aligned_cols=149 Identities=15% Similarity=0.202 Sum_probs=126.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFI-SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
.+-+|++++|++|||||||++++.++.+. ..+ .+|++..+....+..++..+.+.+||++|++.+..++..+++.+|
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~--~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d 79 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAY--SPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACD 79 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccC--CCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCC
Confidence 35689999999999999999999999886 444 777776766666777887788999999999999888999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------CCceEEeeccCCCCHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
++++|||++++++|+.+..|+..+... .++|+++|+||+|+.+. ...++++||++|.|++++|
T Consensus 80 ~~llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 80 VACLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF 158 (169)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence 999999999999999999998865432 47999999999997421 1146999999999999999
Q ss_pred HHHHHHHHH
Q psy17231 149 ADIGRQLIL 157 (189)
Q Consensus 149 ~~i~~~i~~ 157 (189)
+.+.+.+.+
T Consensus 159 ~~l~~~~~~ 167 (169)
T cd01892 159 TKLATAAQY 167 (169)
T ss_pred HHHHHHhhC
Confidence 999988763
No 83
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=1.1e-28 Score=182.42 Aligned_cols=151 Identities=30% Similarity=0.463 Sum_probs=127.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
...+||+++|++|||||||+++|.+..+. . ..++.+.++....+..++..+.+.+||+||++++..++..+++.+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-D--LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-C--cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 45789999999999999999999988763 2 35677767767777778878899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHH-HHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQ-HLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~ 147 (189)
+++|||++++++|+.+.. |...+.... .+.|+++|+||.|+... ...|+++||++|.|++++
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l 168 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQC 168 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999965 665555433 46899999999987422 236899999999999999
Q ss_pred HHHHHHHHHHhh
Q psy17231 148 FADIGRQLILSN 159 (189)
Q Consensus 148 ~~~i~~~i~~~~ 159 (189)
|+++.+.+.+..
T Consensus 169 ~~~l~~~~~~~~ 180 (211)
T PLN03118 169 FEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHhhh
Confidence 999999997654
No 84
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=4.8e-29 Score=176.59 Aligned_cols=144 Identities=36% Similarity=0.573 Sum_probs=125.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++.+..+.... .++.+.++....+...+..+.+.+||+||++.+......+++.+|++++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDL--AATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccc--CCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEE
Confidence 58999999999999999999988875544 5666667666666777778899999999999998888999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
|||++++++|+.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|+++++++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999999999888764 68999999999987521 23799999999999999999988
Q ss_pred HH
Q psy17231 153 RQ 154 (189)
Q Consensus 153 ~~ 154 (189)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 75
No 85
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=2.2e-29 Score=181.94 Aligned_cols=146 Identities=16% Similarity=0.354 Sum_probs=120.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
++.+||+++|++|||||||++++..+.+.. +.+|++.+.. .+.. ..+.+++||+||++++..++..+++++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~---~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~ 87 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc---ccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 456899999999999999999998877642 3677776543 2333 34789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccCC------------------ceEEeeccCCCCHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLIS------------------STYKTSCKTGEGVE 145 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~~------------------~~~~~Sa~~~~~i~ 145 (189)
+|+|||+++++++++...|+..+.... +++|++||+||.|+..... .++++||++|+|++
T Consensus 88 iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999999999988888775432 5799999999998653211 24579999999999
Q ss_pred HHHHHHHHHHHHh
Q psy17231 146 EMFADIGRQLILS 158 (189)
Q Consensus 146 ~~~~~i~~~i~~~ 158 (189)
++|+++.+.+.++
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999888654
No 86
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=3.2e-29 Score=177.47 Aligned_cols=138 Identities=15% Similarity=0.367 Sum_probs=114.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|.+|||||||++++..+.+.. +.+|++.+... +.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~---~~pt~g~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc---cCCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 589999999999999999998877753 36777765532 333 35789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~~~~ 148 (189)
|||++++.+|++...|+..+.... ..+|+++++||+|+.... ..++++||++|.|++++|
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999999998888776432 469999999999974321 135789999999999999
Q ss_pred HHHHH
Q psy17231 149 ADIGR 153 (189)
Q Consensus 149 ~~i~~ 153 (189)
+++.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 87
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=9e-29 Score=179.05 Aligned_cols=152 Identities=16% Similarity=0.385 Sum_probs=125.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE-CCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV-DDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
+.+||+++|++|||||||++++....+... .+|.+.+.....+.. ++..+.+.+||+||++++...+..+++.+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 78 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT---VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDG 78 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc---CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCE
Confidence 468999999999999999999998877532 466665665554443 3356889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC-------------------CceEEeeccCCCCH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI-------------------SSTYKTSCKTGEGV 144 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~-------------------~~~~~~Sa~~~~~i 144 (189)
+++|+|++++++++.+..|+..+.... .++|+++|+||+|+.+.. .+++++||++|.|+
T Consensus 79 ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 79 IVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 999999999999999988888877653 579999999999864310 14789999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy17231 145 EEMFADIGRQLILSNRS 161 (189)
Q Consensus 145 ~~~~~~i~~~i~~~~~~ 161 (189)
+++|+++.+.+.+.++.
T Consensus 159 ~~l~~~l~~~l~~~~~~ 175 (183)
T cd04152 159 QEGLEKLYEMILKRRKM 175 (183)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999998766544
No 88
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=2.2e-28 Score=181.23 Aligned_cols=152 Identities=28% Similarity=0.457 Sum_probs=134.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
.+..+|++++|++|||||||++++..+.+...+ .+|++.++....+..++..+.+.+||++|++++..++..++..++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKY--IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 367899999999999999999999888876555 778888887777777888899999999999999888899999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
++++|||++++.+|..+..|+..+.....+.|+++++||+|+... ...++++||++|.|++++|.++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~i 163 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999999998877778999999999886421 1368999999999999999999
Q ss_pred HHHHHHh
Q psy17231 152 GRQLILS 158 (189)
Q Consensus 152 ~~~i~~~ 158 (189)
++.+...
T Consensus 164 a~~l~~~ 170 (215)
T PTZ00132 164 ARRLTND 170 (215)
T ss_pred HHHHhhc
Confidence 9988765
No 89
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=1.7e-28 Score=173.50 Aligned_cols=145 Identities=32% Similarity=0.571 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|+|||||++++....+.... .++.+.......+...+..+.+.+||+||++.+...+..++..++++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAIL 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEE
Confidence 58999999999999999999988875543 4444445555556666777889999999999999899999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||+++.|++++|+++.
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999888776 47999999999986532 23689999999999999999998
Q ss_pred HHH
Q psy17231 153 RQL 155 (189)
Q Consensus 153 ~~i 155 (189)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04123 159 KRM 161 (162)
T ss_pred HHh
Confidence 765
No 90
>KOG0088|consensus
Probab=99.97 E-value=6.7e-30 Score=173.47 Aligned_cols=156 Identities=29% Similarity=0.450 Sum_probs=137.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA 83 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 83 (189)
.+.-.+|++++|..-||||||+-|+..++|.... ..|+.-.+..+.+.+.+....+.||||+|+++|..+-+.++++.
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kH--lsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS 86 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKH--LSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS 86 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhh--HHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence 3456899999999999999999999999996554 77877778888888888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231 84 EAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~ 147 (189)
+++++|||++|+++|+.++.|..+++... ..+-+++|+||.|+... ...|+++||+.+.||.++
T Consensus 87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISEL 166 (218)
T ss_pred CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence 99999999999999999999999998876 56889999999886432 348899999999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy17231 148 FADIGRQLILSNRS 161 (189)
Q Consensus 148 ~~~i~~~i~~~~~~ 161 (189)
|+.+....++..+.
T Consensus 167 Fe~Lt~~MiE~~s~ 180 (218)
T KOG0088|consen 167 FESLTAKMIEHSSQ 180 (218)
T ss_pred HHHHHHHHHHHhhh
Confidence 99998877766543
No 91
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.8e-28 Score=174.88 Aligned_cols=148 Identities=35% Similarity=0.541 Sum_probs=127.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
...++++++|++|||||||++++....+.... .++++.++....+.+.+..+.+.+||+||++.+...+..++..+|+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 82 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANA 82 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 34589999999999999999999988775544 6677767777777888888899999999999999888999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++++++++.+..|+..+.... .+.|+++|+||.|+... ...++++||++|.|++++|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 162 (169)
T cd04114 83 LILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFL 162 (169)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence 999999999999999999998887765 47999999999997421 13689999999999999999
Q ss_pred HHHHHH
Q psy17231 150 DIGRQL 155 (189)
Q Consensus 150 ~i~~~i 155 (189)
++.+.+
T Consensus 163 ~i~~~~ 168 (169)
T cd04114 163 DLACRL 168 (169)
T ss_pred HHHHHh
Confidence 998764
No 92
>KOG0081|consensus
Probab=99.97 E-value=1.1e-30 Score=177.34 Aligned_cols=163 Identities=29% Similarity=0.423 Sum_probs=140.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC---------CeEEEEEEEeCCCccccccch
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD---------DRSIQMQLWDTGGMERVASIT 76 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~~ 76 (189)
..-+|.+.+|++|||||||+.++..++|...- ..|+|+++..+.+-++ +..+.+++|||+|+++|+++.
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qF--IsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQF--ISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCccccee--EEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 45678999999999999999999999996554 7888888887755442 346789999999999999999
Q ss_pred HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeecc
Q psy17231 77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCK 139 (189)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~ 139 (189)
.++++++-+++++||+++.+||-+++.|+.++..+. +++.+++++||+|+... .-||||+||-
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 999999999999999999999999999999988775 88999999999886532 2399999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhhhhhcCC
Q psy17231 140 TGEGVEEMFADIGRQLILSNRSRLELQTMGA 170 (189)
Q Consensus 140 ~~~~i~~~~~~i~~~i~~~~~~~~~~~~~~~ 170 (189)
+|.|+++..+.++..+.++.....+....+.
T Consensus 165 tg~Nv~kave~LldlvM~Rie~~v~~s~~p~ 195 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMKRIEQCVEKSEIPL 195 (219)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence 9999999999999999988777666655544
No 93
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=1.3e-28 Score=183.07 Aligned_cols=149 Identities=23% Similarity=0.310 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhc-CCcEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFI-SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYK-FAEAA 86 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~ 86 (189)
+||+++|++|||||||+++|..+.+. ..+ .++.+.+....++.+++....+.+||++|++. .....++. .+|++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~--~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~i 76 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAY--DASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAF 76 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCc--CCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEE
Confidence 58999999999999999999887775 333 45554466667777888889999999999972 23345566 89999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
++|||++++++|+.+..|+..+.... .++|+|+|+||+|+.+. ..+|+++||++|.|++++|+
T Consensus 77 ilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~ 156 (221)
T cd04148 77 VVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLE 156 (221)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999999999888764 57999999999997321 23789999999999999999
Q ss_pred HHHHHHHHhhhh
Q psy17231 150 DIGRQLILSNRS 161 (189)
Q Consensus 150 ~i~~~i~~~~~~ 161 (189)
++++.+......
T Consensus 157 ~l~~~~~~~~~~ 168 (221)
T cd04148 157 GIVRQIRLRRDS 168 (221)
T ss_pred HHHHHHHhhhcc
Confidence 999988755433
No 94
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=8.7e-29 Score=178.93 Aligned_cols=146 Identities=15% Similarity=0.329 Sum_probs=119.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||++++..+.+.. + .+|++.+.. .+.. ..+.+.+||+||++++...+..+++.+|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~--~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ 87 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-T--IPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNG 87 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-c--CCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence 456899999999999999999998877753 2 567765543 2333 34789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVE 145 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~ 145 (189)
+++|||++++++++....++..+.... .++|+++|+||.|+.+.. ..++++||++|.|++
T Consensus 88 iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 88 LIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999999988888775432 579999999999975321 035689999999999
Q ss_pred HHHHHHHHHHHHh
Q psy17231 146 EMFADIGRQLILS 158 (189)
Q Consensus 146 ~~~~~i~~~i~~~ 158 (189)
++|+++.+.+.++
T Consensus 168 e~~~~l~~~i~~~ 180 (182)
T PTZ00133 168 EGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 95
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=2.1e-28 Score=177.67 Aligned_cols=150 Identities=24% Similarity=0.456 Sum_probs=124.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
+.|++++|++|+|||||++++..+.+.... .++.... ....+..++....+.+||++|++.+.......+..+++++
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~--~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~l 77 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEY--HPTVFEN-YVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVIL 77 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcccce-EEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEE
Confidence 469999999999999999999988775543 4454323 2345566777788999999999988877777889999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc--------------------------CCceEEeeccC
Q psy17231 88 LVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL--------------------------ISSTYKTSCKT 140 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------------~~~~~~~Sa~~ 140 (189)
+|||++++++|+.+. .|+..+....++.|+++|+||.|+... ..+||+|||++
T Consensus 78 lv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 157 (187)
T cd04129 78 IGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALT 157 (187)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCC
Confidence 999999999999996 699998877678999999999997431 13799999999
Q ss_pred CCCHHHHHHHHHHHHHHhhh
Q psy17231 141 GEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 141 ~~~i~~~~~~i~~~i~~~~~ 160 (189)
|.|++++|+++++.+...++
T Consensus 158 ~~~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 158 GEGVDDVFEAATRAALLVRK 177 (187)
T ss_pred CCCHHHHHHHHHHHHhcccC
Confidence 99999999999988866544
No 96
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=1.4e-28 Score=175.01 Aligned_cols=144 Identities=23% Similarity=0.424 Sum_probs=117.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc-ccchHHHhcCCcEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV-ASITSSYYKFAEAAIL 88 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~i~ 88 (189)
||+++|++|||||||++++....+...+ .++.+ ......+..++..+.+.+||+||++.+ ......+++.+|++++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 77 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEY--DPNLE-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVL 77 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcccccc--CCChH-HhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEE
Confidence 6899999999999999999988775544 44443 233455677788889999999998853 4456778899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc---------------CCceEEeeccCC-CCHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTG-EGVEEMFA 149 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~-~~i~~~~~ 149 (189)
|||++++++|+.+..|+..+.... .++|+++|+||+|+.+. ..+|+++||++| .|++++|+
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~ 157 (165)
T cd04146 78 VYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFH 157 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHH
Confidence 999999999999999998887753 47999999999986321 248899999999 59999999
Q ss_pred HHHHHHH
Q psy17231 150 DIGRQLI 156 (189)
Q Consensus 150 ~i~~~i~ 156 (189)
++++.+.
T Consensus 158 ~l~~~~~ 164 (165)
T cd04146 158 ELCREVR 164 (165)
T ss_pred HHHHHHh
Confidence 9988664
No 97
>KOG0091|consensus
Probab=99.96 E-value=2e-29 Score=171.93 Aligned_cols=154 Identities=30% Similarity=0.479 Sum_probs=134.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE-CCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV-DDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
...++++++|++-+|||+|+++|..+++..-. .||+|++++...+.. .+..+++++|||+|+++|+++...++++.-
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaels--dptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELS--DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccC--CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 35689999999999999999999999997766 899999998876655 566899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcE-EEEeeccccccc---------------CCceEEeeccCCCCHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKI-FLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~-ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~ 146 (189)
++++|||++|+++|+.+..|+.+...+. |.+++ .+||+|+|+... ...|+|+||++|.|++|
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeE 163 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEE 163 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHH
Confidence 9999999999999999999999988776 45554 589999886422 34899999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q psy17231 147 MFADIGRQLILSNRS 161 (189)
Q Consensus 147 ~~~~i~~~i~~~~~~ 161 (189)
.|..+.+.+......
T Consensus 164 AF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 164 AFDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999988876544
No 98
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=1.8e-28 Score=175.32 Aligned_cols=142 Identities=19% Similarity=0.394 Sum_probs=117.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (189)
||+++|++|||||||++++.+..+.. +.+|++.+.. .+.. ..+.+.+||+||+.++...+..+++.++++++|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~---~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ---PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC---cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEE
Confidence 68999999999999999999886642 3667665553 2333 347899999999999998999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC---------------C----ceEEeeccCCCCHHHHH
Q psy17231 90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI---------------S----STYKTSCKTGEGVEEMF 148 (189)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~---------------~----~~~~~Sa~~~~~i~~~~ 148 (189)
+|++++++++++..|+..+.+.. .+.|+++|+||+|+.+.. . .+++|||++|.||+++|
T Consensus 74 ~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 74 VDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred EeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 99999999999999999887643 468999999998864210 1 47789999999999999
Q ss_pred HHHHHHHHHh
Q psy17231 149 ADIGRQLILS 158 (189)
Q Consensus 149 ~~i~~~i~~~ 158 (189)
+++++.+...
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9999877654
No 99
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=6.6e-28 Score=170.90 Aligned_cols=145 Identities=32% Similarity=0.496 Sum_probs=124.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++....+.... .++.+ +........++..+.+.+||+||+.++...+..+++.++++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 77 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDY--EPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcccc--CCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEE
Confidence 58999999999999999999988876544 44443 3344555677778899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
|||++++.+|..+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|+++
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (164)
T cd04139 78 VFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDL 157 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999999888863 57999999999997541 2378999999999999999999
Q ss_pred HHHHH
Q psy17231 152 GRQLI 156 (189)
Q Consensus 152 ~~~i~ 156 (189)
.+.+.
T Consensus 158 ~~~~~ 162 (164)
T cd04139 158 VREIR 162 (164)
T ss_pred HHHHH
Confidence 88775
No 100
>KOG0097|consensus
Probab=99.96 E-value=1.9e-28 Score=163.74 Aligned_cols=153 Identities=29% Similarity=0.512 Sum_probs=138.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
...+|.+|+|+-|+|||+|+..|..++|...- .+|+|+++.+..+...++++++++||++|+++|+.....+++++.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadc--phtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcC--CcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 45789999999999999999999999997655 7899999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccccC---------------CceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLI---------------SSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~---------------~~~~~~Sa~~~~~i~~~~~ 149 (189)
.+.|||++.+.++..+..|+...+... ++..+++++||+|+.... -.|.++||++|.|+++.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 999999999999999999999988876 889999999998865321 2789999999999999998
Q ss_pred HHHHHHHHhhh
Q psy17231 150 DIGRQLILSNR 160 (189)
Q Consensus 150 ~i~~~i~~~~~ 160 (189)
...+++.+..+
T Consensus 167 e~akkiyqniq 177 (215)
T KOG0097|consen 167 ETAKKIYQNIQ 177 (215)
T ss_pred HHHHHHHHhhh
Confidence 88888877654
No 101
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=4.4e-28 Score=172.73 Aligned_cols=145 Identities=22% Similarity=0.283 Sum_probs=117.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
.||+++|++|||||||+++|..+.+.... ..+. ..........+..+.+.+||+||++++...+...+..++++++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~il 76 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENV--PRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICL 76 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccC--CCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEE
Confidence 48999999999999999999998886543 2221 1222333455667899999999998887777778899999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc-------------------CCceEEeeccCCCCHHHHH
Q psy17231 89 VFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL-------------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
|||++++++|+.+. .|+..+.....+.|+++|+||+|+.+. ..++++|||++|.|++++|
T Consensus 77 v~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 77 VYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 156 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHH
Confidence 99999999999984 688877766568999999999886421 1378999999999999999
Q ss_pred HHHHHHHHH
Q psy17231 149 ADIGRQLIL 157 (189)
Q Consensus 149 ~~i~~~i~~ 157 (189)
+.+.+.+.+
T Consensus 157 ~~~~~~~~~ 165 (166)
T cd01893 157 YYAQKAVLH 165 (166)
T ss_pred HHHHHHhcC
Confidence 999988764
No 102
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=2.2e-28 Score=174.09 Aligned_cols=137 Identities=17% Similarity=0.268 Sum_probs=114.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEE
Q psy17231 11 VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVF 90 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (189)
|+++|++|||||||+++|.+..+...+ .+|++.+. ..++...+.+.+||++|++++..++..+++.+|++++||
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~--~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~ 75 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESV--VPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVV 75 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccc--cccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 789999999999999999988775444 67776543 223344678999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------------CCceEEeeccC------CCCHH
Q psy17231 91 SLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------------ISSTYKTSCKT------GEGVE 145 (189)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------~~~~~~~Sa~~------~~~i~ 145 (189)
|++++.++...+.|+..+....+++|+++|+||.|+... ...++++||++ ++|++
T Consensus 76 D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 76 DSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999999999888765578999999999885431 12578888887 99999
Q ss_pred HHHHHHHH
Q psy17231 146 EMFADIGR 153 (189)
Q Consensus 146 ~~~~~i~~ 153 (189)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998764
No 103
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=1e-27 Score=175.61 Aligned_cols=146 Identities=28% Similarity=0.436 Sum_probs=123.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (189)
||+++|++|||||||++++....+...+ .++.. +.....+.+.+..+.+++||+||+..+..++..++..+|++++|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv 77 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKY--RRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC--CCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEE
Confidence 6899999999999999999998876543 44443 44455677777778999999999999988888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc-----------------CCceEEeeccCCCCHHHHHHH
Q psy17231 90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL-----------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~-----------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
||++++++|+.+..|+..+.... .++|+++|+||.|+.+. ..+++++||++|.|++++|++
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 157 (198)
T cd04147 78 YAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKE 157 (198)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHH
Confidence 99999999999999999888765 47999999999887431 136799999999999999999
Q ss_pred HHHHHHHh
Q psy17231 151 IGRQLILS 158 (189)
Q Consensus 151 i~~~i~~~ 158 (189)
+++.+...
T Consensus 158 l~~~~~~~ 165 (198)
T cd04147 158 LLRQANLP 165 (198)
T ss_pred HHHHhhcc
Confidence 99877633
No 104
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=4.7e-28 Score=173.72 Aligned_cols=142 Identities=18% Similarity=0.316 Sum_probs=116.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
++..+||+++|++|||||||++++.+..+. ...+|++... ..+..+ .+.+.+||+||++.+...+..+++.++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~---~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID---TISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC---CcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 456789999999999999999999977542 2256665433 333444 468899999999988888899999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGV 144 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i 144 (189)
++++|||++++.+|++...|+..+.... .++|+++|+||+|+.+. ..+++++||++|.|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 9999999999999999988888876532 68999999999986421 126999999999999
Q ss_pred HHHHHHHHH
Q psy17231 145 EEMFADIGR 153 (189)
Q Consensus 145 ~~~~~~i~~ 153 (189)
+++|++++.
T Consensus 164 ~~l~~~l~~ 172 (173)
T cd04154 164 LQGIDWLVD 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999864
No 105
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=1.4e-27 Score=167.72 Aligned_cols=142 Identities=42% Similarity=0.661 Sum_probs=126.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++.+..+.... .+|.+.+.....+..++....+.+||+||+..+...+..+++.++++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~ 78 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY--KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAIL 78 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCcc--CCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEE
Confidence 58999999999999999999999887664 6677777777777777777899999999999998899999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccc--cc-------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCH--NL-------------ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~--~~-------------~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
|+|++++++++.+..|+..+.... ...|+++++||+|+. .. ..+++++||+++.|++++|+++.
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999999988876 679999999999984 11 24899999999999999999986
No 106
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=2.3e-27 Score=169.41 Aligned_cols=142 Identities=28% Similarity=0.477 Sum_probs=118.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||+++|.+..+...+ .++.. +.........+..+.+.+||+||++++.......++.+|++++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~ 77 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEY--VPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLI 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEE
Confidence 58999999999999999999999885444 44433 4444556667778899999999999888888888899999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccccC--------------------------C-ceEEeeccC
Q psy17231 89 VFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNLI--------------------------S-STYKTSCKT 140 (189)
Q Consensus 89 v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~~--------------------------~-~~~~~Sa~~ 140 (189)
|||++++++|... ..|+..+.....+.|+++|+||+|+.... . +|+++||++
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (171)
T cd00157 78 CFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALT 157 (171)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCC
Confidence 9999999999877 56887777766789999999998853221 1 789999999
Q ss_pred CCCHHHHHHHHHH
Q psy17231 141 GEGVEEMFADIGR 153 (189)
Q Consensus 141 ~~~i~~~~~~i~~ 153 (189)
|.|++++|+++++
T Consensus 158 ~~gi~~l~~~i~~ 170 (171)
T cd00157 158 QEGVKEVFEEAIR 170 (171)
T ss_pred CCCHHHHHHHHhh
Confidence 9999999999875
No 107
>KOG0083|consensus
Probab=99.96 E-value=8.8e-30 Score=168.38 Aligned_cols=147 Identities=35% Similarity=0.520 Sum_probs=131.8
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEe
Q psy17231 12 ILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFS 91 (189)
Q Consensus 12 ~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (189)
+++|++++|||+|+-|+..+-|... ...+|+|+++-.+.+..++.++++++|||+|+++|++....+++++|+.+++||
T Consensus 1 mllgds~~gktcllir~kdgafl~~-~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllyd 79 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAG-NFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYD 79 (192)
T ss_pred CccccCccCceEEEEEeccCceecC-ceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeee
Confidence 3789999999999999987777544 347889999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231 92 LDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~~~i 155 (189)
++++.||++.+.|+.++.++. ....+++++||||+... ..||+|+||++|.|++..|-.+.+.+
T Consensus 80 iankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 80 IANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence 999999999999999999987 67889999999997432 23999999999999999999998888
Q ss_pred HHhh
Q psy17231 156 ILSN 159 (189)
Q Consensus 156 ~~~~ 159 (189)
.+..
T Consensus 160 ~k~~ 163 (192)
T KOG0083|consen 160 KKLK 163 (192)
T ss_pred HHhc
Confidence 7654
No 108
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=8.2e-28 Score=170.25 Aligned_cols=139 Identities=16% Similarity=0.287 Sum_probs=112.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (189)
+|+++|++|||||||+++|.+..+.. ..+.+|++..... +.. ..+.+.+||+||++++...+..+++.++++++|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~-~~~~~t~g~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 75 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS-QIIVPTVGFNVES--FEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV 75 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc-ceecCccccceEE--EEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence 58999999999999999999875321 2235666644322 222 357889999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeecccccccC------------------CceEEeeccCCCCHHHH
Q psy17231 90 FSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~~~ 147 (189)
+|++++.++..+..|+..+.... .++|+++|+||+|+.+.. ..++++||++|.|++++
T Consensus 76 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~ 155 (162)
T cd04157 76 IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEG 155 (162)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHH
Confidence 99999999999988888776532 479999999998864321 13789999999999999
Q ss_pred HHHHHH
Q psy17231 148 FADIGR 153 (189)
Q Consensus 148 ~~~i~~ 153 (189)
|+++.+
T Consensus 156 ~~~l~~ 161 (162)
T cd04157 156 VQWLQA 161 (162)
T ss_pred HHHHhc
Confidence 999865
No 109
>KOG0395|consensus
Probab=99.96 E-value=1.9e-27 Score=172.86 Aligned_cols=151 Identities=27% Similarity=0.431 Sum_probs=136.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
..+|++++|.+|||||+|+.+|..+.|...+ .||++ +.+.+.+.+++..+.+.++||+|+++|..+...+++..+++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y--~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF 78 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDY--DPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGF 78 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccccccc--CCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEE
Confidence 5689999999999999999999999998776 77876 88888899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccc---------------cCCceEEeeccCCCCHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHN---------------LISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~---------------~~~~~~~~Sa~~~~~i~~~~~ 149 (189)
++||+++++.||+.+..++.++.+.. ..+|+++||||+|+.. ..++|+|+||+.+.+++++|.
T Consensus 79 ~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 79 LLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 99999999999999999999995543 5689999999999865 245899999999999999999
Q ss_pred HHHHHHHHhhh
Q psy17231 150 DIGRQLILSNR 160 (189)
Q Consensus 150 ~i~~~i~~~~~ 160 (189)
.+.+.+.....
T Consensus 159 ~L~r~~~~~~~ 169 (196)
T KOG0395|consen 159 ELVREIRLPRE 169 (196)
T ss_pred HHHHHHHhhhc
Confidence 99999887443
No 110
>KOG0393|consensus
Probab=99.96 E-value=1.2e-28 Score=176.08 Aligned_cols=152 Identities=26% Similarity=0.402 Sum_probs=136.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
+..+|++++|+.++|||+|+-.+..+.|+..+ .||+. +.+...+..+ ++.+.+.+|||+|+++|+.+++..+.++|
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~y--vPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~td 78 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEY--VPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTD 78 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccc--cCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCC
Confidence 45689999999999999999999999998877 77765 6667778884 99999999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccccC----------------------------CceEE
Q psy17231 85 AAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNLI----------------------------SSTYK 135 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------------------~~~~~ 135 (189)
++++||++.++++|+++ .+|+.++.++.++.|+|+||+|.|+.... ..|+|
T Consensus 79 vfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~E 158 (198)
T KOG0393|consen 79 VFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLE 158 (198)
T ss_pred EEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeee
Confidence 99999999999999997 89999999999999999999998876321 27899
Q ss_pred eeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 136 TSCKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 136 ~Sa~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
|||++..|+.++|+..++..+...+
T Consensus 159 cSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 159 CSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred ehhhhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999999887653
No 111
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=3.5e-27 Score=166.45 Aligned_cols=142 Identities=27% Similarity=0.433 Sum_probs=121.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (189)
||+++|++|||||||++++....+.... .++.+ +.....+...+..+.+++||+||+..+...+...+..++++++|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 77 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEY--DPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILV 77 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCc--CCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEE
Confidence 6899999999999999999988765544 44544 55555666777778999999999999888889999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231 90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
||+++++++.++..|...+.... ...|+++|+||+|.... ..+++++||+++.|++++|+++.
T Consensus 78 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 78 YSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLV 157 (160)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999999888876 38999999999886531 23899999999999999999998
Q ss_pred HH
Q psy17231 153 RQ 154 (189)
Q Consensus 153 ~~ 154 (189)
+.
T Consensus 158 ~~ 159 (160)
T cd00876 158 RE 159 (160)
T ss_pred hh
Confidence 75
No 112
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.95 E-value=8.2e-27 Score=168.16 Aligned_cols=148 Identities=24% Similarity=0.330 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
.||+++|++|||||||++++....+.... .++.+..+ .......+..+.+.+||+||++++...+..++..++++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY--YPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYIL 78 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc--CcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEE
Confidence 68999999999999999999988875444 44543232 3445566667889999999999999899999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
|||+++.++++.+..|+..+.+.. .+.|+++|+||+|+... ..+++++||+++.|++++|+++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 158 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELL 158 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999998887764 57899999999996521 2378999999999999999999
Q ss_pred HHHHHHhh
Q psy17231 152 GRQLILSN 159 (189)
Q Consensus 152 ~~~i~~~~ 159 (189)
.+.+....
T Consensus 159 ~~~~~~~~ 166 (180)
T cd04137 159 IEEIEKVE 166 (180)
T ss_pred HHHHHHhc
Confidence 98886554
No 113
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=4.1e-27 Score=166.47 Aligned_cols=138 Identities=20% Similarity=0.391 Sum_probs=112.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (189)
+|+++|++|||||||++++....+... .+|.+.+.. .+... ..+.+.+||+||+..+...+..++..++++++|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~---~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v 74 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT---IPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYV 74 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc---cCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 589999999999999999998887532 556654432 23332 347899999999999888889999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------C-----CceEEeeccCCCCHHHHH
Q psy17231 90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------I-----SSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------~-----~~~~~~Sa~~~~~i~~~~ 148 (189)
+|++++.++.....|+..+.... .+.|+++|+||+|+... . .++++|||++|.|++++|
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 75 VDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred EECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 99999999999988888876543 57999999999996321 0 148899999999999999
Q ss_pred HHHHH
Q psy17231 149 ADIGR 153 (189)
Q Consensus 149 ~~i~~ 153 (189)
+++.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=3.3e-27 Score=168.43 Aligned_cols=137 Identities=17% Similarity=0.257 Sum_probs=112.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (189)
+|+++|++|||||||++++.+. +... +.+|++... ..+... .+.+++||+||+..+..++..+++.++++++|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~--~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKK--VAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCcc--ccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEE
Confidence 4899999999999999999866 4333 367776543 334443 47889999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC---------------------CceEEeeccCC-----
Q psy17231 90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI---------------------SSTYKTSCKTG----- 141 (189)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~---------------------~~~~~~Sa~~~----- 141 (189)
||++++.+++++..|+..+.... .++|+++|+||+|+.+.. ..+++|||++|
T Consensus 74 ~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 74 VDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred EECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 99999999999999999887653 579999999998854321 25677999998
Q ss_pred -CCHHHHHHHHHH
Q psy17231 142 -EGVEEMFADIGR 153 (189)
Q Consensus 142 -~~i~~~~~~i~~ 153 (189)
.|+++.|+|+..
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999864
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=5e-27 Score=168.60 Aligned_cols=140 Identities=23% Similarity=0.385 Sum_probs=115.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
+.++|+++|++|+|||||++++..+.+.. +.+|++.+.. .+..+ ...+.+||+||++.+...+..+++.+|++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~---~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 86 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH---TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAV 86 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC---cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEE
Confidence 46899999999999999999999887753 2566654443 23333 46899999999999998999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVEE 146 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~~ 146 (189)
++|+|+++++++.....++..+.... .++|+++++||+|+.... .+++++||++|.|+++
T Consensus 87 i~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 87 ILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 99999999999988888888776543 579999999998864310 1479999999999999
Q ss_pred HHHHHHH
Q psy17231 147 MFADIGR 153 (189)
Q Consensus 147 ~~~~i~~ 153 (189)
+|+++.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999864
No 116
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=8.6e-27 Score=167.47 Aligned_cols=144 Identities=25% Similarity=0.420 Sum_probs=121.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.+||+++|+.|+|||||++++..+.... ..||.|++.... .+.+ +.+.+||.+|+..+...|..++..++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i--~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~ 83 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEI--KYKG--YSLTIWDLGGQESFRPLWKSYFQNAD 83 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEE--EETT--EEEEEEEESSSGGGGGGGGGGHTTES
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc---cCccccccccee--eeCc--EEEEEEeccccccccccceeeccccc
Confidence 3678999999999999999999999766433 477777665443 3343 67899999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC-------------------CceEEeeccCCCC
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI-------------------SSTYKTSCKTGEG 143 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~-------------------~~~~~~Sa~~~~~ 143 (189)
++|+|+|.++.+.+.+....+..+.... .++|+++++||+|..+.. ..++.|||.+|.|
T Consensus 84 ~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 84 GIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred eeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 9999999999999999988888887754 689999999998865431 1578899999999
Q ss_pred HHHHHHHHHHHH
Q psy17231 144 VEEMFADIGRQL 155 (189)
Q Consensus 144 i~~~~~~i~~~i 155 (189)
+.+.++|+.+++
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=1.2e-26 Score=163.98 Aligned_cols=137 Identities=20% Similarity=0.383 Sum_probs=110.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (189)
||+++|++|||||||++++....+.. ..+|++.+.. .+.. ....+++||+||++.+...+..++..++++++|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~---~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT---TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC---cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 68999999999999999998777643 2566655543 2333 346899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHHHHHH
Q psy17231 90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~~~~~ 149 (189)
+|++++.++.....++..+.+.. .+.|+++|+||+|+.+.. .+++++||++|.|++++|+
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99999988887767666554432 579999999999964211 1489999999999999999
Q ss_pred HHHH
Q psy17231 150 DIGR 153 (189)
Q Consensus 150 ~i~~ 153 (189)
++++
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9865
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=8.7e-27 Score=165.91 Aligned_cols=140 Identities=21% Similarity=0.302 Sum_probs=111.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC----CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFI----SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
+|+++|++|||||||++++...... ....+.+|++.+.. .+.++ ...+.+||+||++.+...+..++..+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 5899999999999999999764321 11223455544443 33443 4688999999999999889999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------------CCceEEeeccCCCC
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------------ISSTYKTSCKTGEG 143 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------------~~~~~~~Sa~~~~~ 143 (189)
+++|+|+++++++.....|+..+.+.. .+.|+++++||+|+... ..+++++||++|.|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 156 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG 156 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence 999999999999999988888877643 57999999999986432 12689999999999
Q ss_pred HHHHHHHHHH
Q psy17231 144 VEEMFADIGR 153 (189)
Q Consensus 144 i~~~~~~i~~ 153 (189)
++++++++..
T Consensus 157 v~e~~~~l~~ 166 (167)
T cd04160 157 VREGIEWLVE 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 119
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.95 E-value=2.3e-26 Score=168.21 Aligned_cols=118 Identities=26% Similarity=0.400 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-----CeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-----DRSIQMQLWDTGGMERVASITSSYYKFA 83 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 83 (189)
+||+++|++|||||||++++..+.+...+ .+|++.++..+.+.++ +..+.+++||++|+++|..++..+++.+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~--~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~a 78 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRP--SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQV 78 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCC--CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcC
Confidence 58999999999999999999999887654 7788877766666553 4678999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhC--------------------CCCcEEEEeecccccc
Q psy17231 84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--------------------ENAKIFLCGNNEQCHN 128 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~p~ivv~nK~d~~~ 128 (189)
+++++|||++++++|+++..|+..+.... .++|+|+||||.|+..
T Consensus 79 d~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 79 NGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred CEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 99999999999999999999999997631 4689999999999743
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=1.2e-26 Score=168.62 Aligned_cols=143 Identities=17% Similarity=0.301 Sum_probs=116.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+..||+++|++|||||||++++.+..+. . +.+|.+... ..+.+++ ..+.+||+||+..+...+..+++.++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~--~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad 88 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-Q--HVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVD 88 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-c--cCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCC
Confidence 456899999999999999999999987763 2 245554332 3344443 57899999999988888899999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc-----------------------------CCce
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL-----------------------------ISST 133 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~-----------------------------~~~~ 133 (189)
++++|+|+++.++++....|+..+.+.. .+.|+++++||+|+... ...+
T Consensus 89 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 89 GIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 9999999999999998888888887643 57999999999886421 1258
Q ss_pred EEeeccCCCCHHHHHHHHHHH
Q psy17231 134 YKTSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 134 ~~~Sa~~~~~i~~~~~~i~~~ 154 (189)
++|||++|.|++++|+++.+.
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEeEecCCCChHHHHHHHHhh
Confidence 999999999999999999765
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=2.3e-26 Score=162.33 Aligned_cols=137 Identities=15% Similarity=0.364 Sum_probs=113.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (189)
||+++|++|||||||++++.+..+. ...+|.+..... +.+. ...+.+||+||++.+...+..++..++++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~---~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV---TTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCcCcceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEE
Confidence 6899999999999999999988742 225555544332 3333 46889999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHHHHHH
Q psy17231 90 FSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
||+++++++.....|+..+.... .+.|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 74 VDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 99999999999988888877643 58999999999997431 12689999999999999999
Q ss_pred HHHH
Q psy17231 150 DIGR 153 (189)
Q Consensus 150 ~i~~ 153 (189)
++..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9865
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=8.8e-26 Score=163.51 Aligned_cols=142 Identities=15% Similarity=0.239 Sum_probs=114.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.++|+++|++|||||||++++.+..+.. . .+|.+... ..+... .+++.+||+||+..+...+..++..+++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~--~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ 87 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-H--QPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNG 87 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-c--CCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 456999999999999999999999876532 1 34443322 223333 3688999999999988899999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc-------------------------CCceEEeec
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL-------------------------ISSTYKTSC 138 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~-------------------------~~~~~~~Sa 138 (189)
+++|+|++++++++....++..+.... .++|+++|+||+|+... ...+++|||
T Consensus 88 ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 88 IVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999999999999988888776532 57999999999885421 114899999
Q ss_pred cCCCCHHHHHHHHHHH
Q psy17231 139 KTGEGVEEMFADIGRQ 154 (189)
Q Consensus 139 ~~~~~i~~~~~~i~~~ 154 (189)
++|.|++++++|+.++
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999765
No 123
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=3e-25 Score=155.95 Aligned_cols=137 Identities=20% Similarity=0.371 Sum_probs=113.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEE
Q psy17231 11 VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVF 90 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 90 (189)
|+++|++|||||||++++.+..+...+ .+|.+.+... .... .+.+.+||+||++.+...+..++..++++++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 75 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDT--IPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVV 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCc--cCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEE
Confidence 789999999999999999998886555 5666655443 2333 368999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHHHHHHH
Q psy17231 91 SLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~~~~~~ 150 (189)
|+++..++.....|+..+.... .++|+++|+||.|+.+.. .+++++||++|.|+++++++
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (159)
T cd04159 76 DAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDW 155 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHH
Confidence 9999999988888888776542 579999999998864221 26799999999999999999
Q ss_pred HHH
Q psy17231 151 IGR 153 (189)
Q Consensus 151 i~~ 153 (189)
+.+
T Consensus 156 l~~ 158 (159)
T cd04159 156 LIK 158 (159)
T ss_pred Hhh
Confidence 865
No 124
>KOG4252|consensus
Probab=99.94 E-value=3.2e-27 Score=163.62 Aligned_cols=153 Identities=29% Similarity=0.444 Sum_probs=138.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
-+|++|+|..++||||+|++++.+-|...+ ..|+|.++....+....+.+...+||++|+++|+.+..++++++.+.+
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdy--kktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDY--KKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhcccccccc--ccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 589999999999999999999988886555 788898998888888777888999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc---------------cCCceEEeeccCCCCHHHHHHHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN---------------LISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~---------------~~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
+||+.+|+.+|+.+..|++.+......+|.++|-||.|+.. +...++-+|++...|+.++|.+++
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLa 177 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLA 177 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 99999999999999999999999888999999999977532 234889999999999999999999
Q ss_pred HHHHHhhhhh
Q psy17231 153 RQLILSNRSR 162 (189)
Q Consensus 153 ~~i~~~~~~~ 162 (189)
.++.+..+..
T Consensus 178 eK~~q~~kq~ 187 (246)
T KOG4252|consen 178 EKLTQQKKQS 187 (246)
T ss_pred HHHHHHHHHH
Confidence 9988876653
No 125
>KOG0073|consensus
Probab=99.94 E-value=7e-25 Score=149.76 Aligned_cols=146 Identities=20% Similarity=0.323 Sum_probs=123.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.++|+++|..|+||||++++|.+.+. ....||.|+++.+..+ + .+++++||.+|+..++..|..++..+|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf~Iktl~~--~--~~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDT---DTISPTLGFQIKTLEY--K--GYTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCc---cccCCccceeeEEEEe--c--ceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 4489999999999999999999998773 3337787777655433 2 4789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC-------------------CceEEeeccCCCCH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI-------------------SSTYKTSCKTGEGV 144 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~-------------------~~~~~~Sa~~~~~i 144 (189)
.|+|+|.+|+..+++....+..+.... .+.|++|++||.|+.+.. .+.+.||+.+|+++
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 999999999999998888777776643 679999999998876332 27799999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy17231 145 EEMFADIGRQLILS 158 (189)
Q Consensus 145 ~~~~~~i~~~i~~~ 158 (189)
.+.++|+...+..+
T Consensus 167 ~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 167 LEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988763
No 126
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=2.6e-25 Score=170.62 Aligned_cols=121 Identities=24% Similarity=0.351 Sum_probs=105.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-------------CeEEEEEEEeCCCcccc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-------------DRSIQMQLWDTGGMERV 72 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~ 72 (189)
...+||+++|+.|||||||+++|..+.+...+ .+|+|.++..+.+.++ +..+.++|||++|++.|
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~--~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARP--PQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCccccc--CCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 45799999999999999999999998886544 7888888776666654 24688999999999999
Q ss_pred ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-------------CCCcEEEEeecccccc
Q psy17231 73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-------------ENAKIFLCGNNEQCHN 128 (189)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~p~ivv~nK~d~~~ 128 (189)
..++..+++.++++|+|||++++++|+.+..|+..+.... .++|++||+||+|+..
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 9999999999999999999999999999999999998752 2589999999999743
No 127
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=7.2e-25 Score=156.91 Aligned_cols=141 Identities=18% Similarity=0.349 Sum_probs=113.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.++|+++|++|||||||++++.+..+.. ..++.+.+.. .+...+ ..+.+||+||+..+...+..+++.+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 557999999999999999999999876532 2455554432 333443 578999999998888888888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVE 145 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~ 145 (189)
+++|+|+++..++.....|+..+.... .++|+++++||+|..... .+++++||++|.|++
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence 999999999999988888877766543 579999999998864321 136799999999999
Q ss_pred HHHHHHHH
Q psy17231 146 EMFADIGR 153 (189)
Q Consensus 146 ~~~~~i~~ 153 (189)
++|+|+++
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999875
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=6.4e-25 Score=158.00 Aligned_cols=143 Identities=21% Similarity=0.204 Sum_probs=105.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC--CCC---CCCCcc------cceeeeeEEEE--EE---CCeEEEEEEEeCCCccccc
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDT--FIS---SSSRKS------TLGLDNFNKEY--KV---DDRSIQMQLWDTGGMERVA 73 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~--~~~---~~~~~~------t~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~~~ 73 (189)
+|+++|.+|+|||||+++|.+.. +.. ...+.+ +.+.++..... .+ ++..+.+++|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 100 001111 22333333222 22 5567889999999999999
Q ss_pred cchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------C---CceEEee
Q psy17231 74 SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------I---SSTYKTS 137 (189)
Q Consensus 74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~---~~~~~~S 137 (189)
..+..+++.+|++++|+|+++..++.....|.... . .++|+++|+||+|+.+. . ..++++|
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E--NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVS 158 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H--cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEee
Confidence 88889999999999999999877666666554322 2 37899999999996421 0 1489999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q psy17231 138 CKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 138 a~~~~~i~~~~~~i~~~i 155 (189)
|++|.|++++|+++.+.+
T Consensus 159 a~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 159 AKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccCCCCHHHHHHHHHhhC
Confidence 999999999999998765
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=3.3e-24 Score=152.75 Aligned_cols=143 Identities=19% Similarity=0.208 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---------chHHH
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---------ITSSY 79 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~ 79 (189)
.+|+++|++|+|||||+++|.+..+.....+..|. +........ ....+.+|||||+.+... .....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~--~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTK--SLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITAL 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCccc--ceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHH
Confidence 37999999999999999999988764322112222 222222222 246899999999843111 00111
Q ss_pred hcCCcEEEEEEeCCChhhH--HHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCH
Q psy17231 80 YKFAEAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGV 144 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i 144 (189)
...+|++++|+|++++.++ +....|+..+.....+.|+++|+||+|+... ..+++++||++|.|+
T Consensus 77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCH
Confidence 2336899999999987653 5666788877665457999999999886321 237899999999999
Q ss_pred HHHHHHHHHHH
Q psy17231 145 EEMFADIGRQL 155 (189)
Q Consensus 145 ~~~~~~i~~~i 155 (189)
+++|+++.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 130
>KOG0070|consensus
Probab=99.92 E-value=1.3e-24 Score=151.86 Aligned_cols=146 Identities=20% Similarity=0.394 Sum_probs=128.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.++|+++|-.++||||++++|..+++... .||+|++.....+. .+.|.+||.+|+..++.+|..+++..+
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~ 86 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQ 86 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCc
Confidence 45689999999999999999999998887544 88888777665554 478999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccCC------------------ceEEeeccCCCCH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLIS------------------STYKTSCKTGEGV 144 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~~------------------~~~~~Sa~~~~~i 144 (189)
++|+|+|.+|++.+.+.+..+..+.... .+.|+++.+||+|+++... .+..|||.+|+|+
T Consensus 87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 87 GLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 9999999999999999999998888876 5899999999999765532 5577999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17231 145 EEMFADIGRQLIL 157 (189)
Q Consensus 145 ~~~~~~i~~~i~~ 157 (189)
.|.++|+.+.+.+
T Consensus 167 ~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 167 YEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 131
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=2.5e-23 Score=154.43 Aligned_cols=154 Identities=30% Similarity=0.458 Sum_probs=128.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
+..+||+++|++|||||||+++|....+...+ .+|++..+...........+++.+|||+|++++..++..++.++++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~ 80 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGY--PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANG 80 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccC--CCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCE
Confidence 34589999999999999999999999987666 5666555555555555547889999999999999999999999999
Q ss_pred EEEEEeCCC-hhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccccC------------------------------Cce
Q psy17231 86 AILVFSLDN-AASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLI------------------------------SST 133 (189)
Q Consensus 86 ~i~v~d~~~-~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~------------------------------~~~ 133 (189)
+++|||.++ ..+++....|...+.... .+.|+++|+||.|+.... ..+
T Consensus 81 ~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (219)
T COG1100 81 ILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPAL 160 (219)
T ss_pred EEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccce
Confidence 999999999 556666689998988876 479999999998865431 147
Q ss_pred EEeecc--CCCCHHHHHHHHHHHHHHhhhh
Q psy17231 134 YKTSCK--TGEGVEEMFADIGRQLILSNRS 161 (189)
Q Consensus 134 ~~~Sa~--~~~~i~~~~~~i~~~i~~~~~~ 161 (189)
+++|++ ++.++.++|..+++.+.+....
T Consensus 161 ~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (219)
T COG1100 161 LETSAKSLTGPNVNELFKELLRKLLEEIEK 190 (219)
T ss_pred eEeecccCCCcCHHHHHHHHHHHHHHhhhh
Confidence 999999 9999999999999998765443
No 132
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=8.2e-24 Score=155.52 Aligned_cols=147 Identities=22% Similarity=0.198 Sum_probs=107.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--c------hH
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--I------TS 77 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--~------~~ 77 (189)
.+.++|+++|++|||||||++++.+..+.....+.+|. +.....+.+.+. ..+.+|||||..+... . ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~--~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATL--DPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceec--cceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH
Confidence 34589999999999999999999988754443334444 333333444332 3789999999743211 0 01
Q ss_pred HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccc----------cCCceEEeeccCCCCHHH
Q psy17231 78 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN----------LISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~----------~~~~~~~~Sa~~~~~i~~ 146 (189)
..+..+|++++|+|++++.++.....|...+.... .++|+++|+||+|+.+ ...+++++||++|.|+++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDE 195 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHH
Confidence 23568999999999999988888777776665543 4689999999999743 234799999999999999
Q ss_pred HHHHHHHHH
Q psy17231 147 MFADIGRQL 155 (189)
Q Consensus 147 ~~~~i~~~i 155 (189)
+++++.+.+
T Consensus 196 l~~~L~~~~ 204 (204)
T cd01878 196 LLEAIEELL 204 (204)
T ss_pred HHHHHHhhC
Confidence 999987653
No 133
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.92 E-value=8.8e-24 Score=142.44 Aligned_cols=116 Identities=33% Similarity=0.459 Sum_probs=88.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (189)
||+|+|++|||||||+++|.+..+.....+.++.+................+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999888762111122222244444556666666799999999999888888889999999999
Q ss_pred EeCCChhhHHHH---HHHHHHHHHhCCCCcEEEEeeccc
Q psy17231 90 FSLDNAASFHVL---SQHLLEIVTYAENAKIFLCGNNEQ 125 (189)
Q Consensus 90 ~d~~~~~s~~~~---~~~~~~~~~~~~~~p~ivv~nK~d 125 (189)
||++++++++.+ ..|+..+.....++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999999887 456666666557799999999987
No 134
>PTZ00099 rab6; Provisional
Probab=99.92 E-value=2.1e-23 Score=149.80 Aligned_cols=125 Identities=31% Similarity=0.503 Sum_probs=109.2
Q ss_pred CCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHh
Q psy17231 32 TFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY 111 (189)
Q Consensus 32 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 111 (189)
.|...+ .+|+|.++....+.+++..+.+.+|||+|++++..++..+++++|++++|||++++++|+.+..|+..+...
T Consensus 4 ~F~~~~--~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~ 81 (176)
T PTZ00099 4 TFDNNY--QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE 81 (176)
T ss_pred CcCCCC--CCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 444443 788988998888888888999999999999999999999999999999999999999999999999998776
Q ss_pred C-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231 112 A-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 112 ~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
. +..|+++|+||+|+... ...|+++||++|.|++++|+++++.+.+.
T Consensus 82 ~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred cCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4 57899999999997431 23689999999999999999999988653
No 135
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=3.5e-23 Score=144.95 Aligned_cols=142 Identities=26% Similarity=0.394 Sum_probs=116.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
.+||+++|++|+|||||++++....+...+ .++.+.+.....+..++..+.+.+||+||+.++...+......++.++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 78 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEY--KPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSL 78 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcC--CCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEE
Confidence 479999999999999999999988865444 456666666666677776688999999999999888888999999999
Q ss_pred EEEeCCCh-hhHHHHH-HHHHHHHHhCC-CCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHH
Q psy17231 88 LVFSLDNA-ASFHVLS-QHLLEIVTYAE-NAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 88 ~v~d~~~~-~s~~~~~-~~~~~~~~~~~-~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
.++|+... .++.... .|...+..... +.|+++++||+|+... ..+++++||++|.|++++|++
T Consensus 79 ~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 79 RVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred EEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence 99999877 6666654 67766666554 7999999999886541 237899999999999999988
Q ss_pred H
Q psy17231 151 I 151 (189)
Q Consensus 151 i 151 (189)
+
T Consensus 159 l 159 (161)
T TIGR00231 159 V 159 (161)
T ss_pred h
Confidence 6
No 136
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.91 E-value=1.8e-23 Score=149.17 Aligned_cols=142 Identities=18% Similarity=0.149 Sum_probs=102.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----cccchHHH---hcC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----VASITSSY---YKF 82 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~ 82 (189)
+|+++|.+|||||||+++|.+........+..|. +.....+...+ ...+.+|||||+.+ ...+...+ +..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~--~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTL--VPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCcccc--CCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 5899999999999999999876542221112221 22222233333 24789999999742 22233333 346
Q ss_pred CcEEEEEEeCCCh-hhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc---------------CCceEEeeccCCCC
Q psy17231 83 AEAAILVFSLDNA-ASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEG 143 (189)
Q Consensus 83 ~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~ 143 (189)
+|++++|+|++++ ++++.+..|++.+.... .++|+++|+||+|+... ..+++++||+++.|
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 9999999999999 79999999998887764 36999999999885321 24789999999999
Q ss_pred HHHHHHHHHHH
Q psy17231 144 VEEMFADIGRQ 154 (189)
Q Consensus 144 i~~~~~~i~~~ 154 (189)
++++|+++.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998865
No 137
>KOG0075|consensus
Probab=99.91 E-value=2.8e-24 Score=144.35 Aligned_cols=143 Identities=18% Similarity=0.322 Sum_probs=123.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
.++.+.++|..++|||||.|....+.+.... .||.|++.... ....+.+.+||.||+..|..+|..+++.++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edm--iptvGfnmrk~----tkgnvtiklwD~gGq~rfrsmWerycR~v~ai 92 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDM--IPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAI 92 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhh--cccccceeEEe----ccCceEEEEEecCCCccHHHHHHHHhhcCcEE
Confidence 4678999999999999999999988886655 77887776443 33357889999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccCC------------------ceEEeeccCCCCHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLIS------------------STYKTSCKTGEGVEE 146 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~~------------------~~~~~Sa~~~~~i~~ 146 (189)
++|+|+++++.++..+..++.+.... .++|++|+|||.|+++... .+|-+|+++..|++.
T Consensus 93 vY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 93 VYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred EEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 99999999999988888888888776 7899999999988776543 678899999999999
Q ss_pred HHHHHHHHH
Q psy17231 147 MFADIGRQL 155 (189)
Q Consensus 147 ~~~~i~~~i 155 (189)
+.+|++++-
T Consensus 173 ~~~Wli~hs 181 (186)
T KOG0075|consen 173 TLDWLIEHS 181 (186)
T ss_pred HHHHHHHHh
Confidence 999998753
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.91 E-value=4.4e-23 Score=146.07 Aligned_cols=137 Identities=15% Similarity=0.120 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT---FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
+.|+++|++|||||||+++|.+.. +.....+..|+ +.......+.+ ...+.+|||||++++.......+..+|+
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~--~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ 77 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITI--DLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDL 77 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceE--EeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCE
Confidence 468999999999999999998532 32222223333 33333344432 3578999999999887666677889999
Q ss_pred EEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------CCceEEeeccCCC
Q psy17231 86 AILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------ISSTYKTSCKTGE 142 (189)
Q Consensus 86 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------~~~~~~~Sa~~~~ 142 (189)
+++|+|+++ +++++.+. .+... ...|+++|+||+|+... ..+++++||++|.
T Consensus 78 ii~V~d~~~~~~~~~~~~~~----~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 78 VLLVVAADEGIMPQTREHLE----ILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred EEEEEECCCCccHhHHHHHH----HHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 999999987 44443332 12222 23599999999886321 2479999999999
Q ss_pred CHHHHHHHHHH
Q psy17231 143 GVEEMFADIGR 153 (189)
Q Consensus 143 ~i~~~~~~i~~ 153 (189)
|++++++.+.+
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999998753
No 139
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=1.1e-22 Score=160.24 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=107.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc---------cccchHH
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER---------VASITSS 78 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~ 78 (189)
.++|+++|.+|+|||||+|+|.+..+.....+.+|. +.....+.+.+ ...+.+|||+|..+ |... ..
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~t-le 264 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATL--DPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRAT-LE 264 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCcccc--CCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence 489999999999999999999987755444445554 44455555533 24789999999732 1111 12
Q ss_pred HhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------CCceEEeeccCCCCHHHHH
Q psy17231 79 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------~~~~~~~Sa~~~~~i~~~~ 148 (189)
.+..+|++++|+|++++.+++.+..|...+.... .++|+++|+||+|+... ..+++++||++|.|+++++
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI~eL~ 344 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLLL 344 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHHHHhCCCCEEEEEccCCCCHHHHH
Confidence 4778999999999999988877776665555543 47999999999997431 1258999999999999999
Q ss_pred HHHHHH
Q psy17231 149 ADIGRQ 154 (189)
Q Consensus 149 ~~i~~~ 154 (189)
+++.+.
T Consensus 345 ~~I~~~ 350 (351)
T TIGR03156 345 EAIAER 350 (351)
T ss_pred HHHHhh
Confidence 998754
No 140
>KOG0096|consensus
Probab=99.90 E-value=3.8e-23 Score=144.53 Aligned_cols=151 Identities=25% Similarity=0.433 Sum_probs=134.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
..++++++|+.|.||||+.++...++|...+ .+|+|..........+...+++..|||.|++.+..+...++-...++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y--~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcA 86 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTY--PATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCA 86 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecc--cCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEeccee
Confidence 4799999999999999999999999997666 88899888887766655579999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHHHHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEEMFADIGR 153 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~~~~~i~~ 153 (189)
+++||++.+-++.++..|.+++.+...++|++++|||.|...- ...|++.||+++.|.+..|-|+.+
T Consensus 87 iimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~Lar 166 (216)
T KOG0096|consen 87 IIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLAR 166 (216)
T ss_pred EEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeecccccccccchHHHhh
Confidence 9999999999999999999999999889999999999774322 128899999999999999999999
Q ss_pred HHHHhh
Q psy17231 154 QLILSN 159 (189)
Q Consensus 154 ~i~~~~ 159 (189)
++....
T Consensus 167 Kl~G~p 172 (216)
T KOG0096|consen 167 KLTGDP 172 (216)
T ss_pred hhcCCC
Confidence 887653
No 141
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2e-22 Score=157.52 Aligned_cols=146 Identities=18% Similarity=0.130 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc----cch---HHHhc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA----SIT---SSYYK 81 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~---~~~~~ 81 (189)
..|.|+|.||||||||++++...+......+..|. ......+.+.+ ...+.+||+||..+-. .+. ...++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~--~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTL--HPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCcee--CceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 46889999999999999999976644333223343 33334444422 2468999999975321 222 33456
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc---------------CCceEEeeccCCCC
Q psy17231 82 FAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEG 143 (189)
Q Consensus 82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~ 143 (189)
.++++++|+|+++.++++.+..|...+..+. .++|+++|+||+|+... ..+++++||+++.|
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G 315 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG 315 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence 7899999999998888999999999887764 37999999999996321 13789999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy17231 144 VEEMFADIGRQLIL 157 (189)
Q Consensus 144 i~~~~~~i~~~i~~ 157 (189)
++++++++.+.+.+
T Consensus 316 I~eL~~~L~~~l~~ 329 (335)
T PRK12299 316 LDELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888754
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.90 E-value=3.4e-22 Score=142.16 Aligned_cols=139 Identities=19% Similarity=0.195 Sum_probs=102.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
.|+++|++|+|||||+++|....+.....+..|. +......... .....+.+|||||+..+...+...+..+|++++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~ 79 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQ--HIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAIL 79 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEE--eeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEE
Confidence 5899999999999999999988876543222232 2222223332 124678999999998888888888899999999
Q ss_pred EEeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------------CCceEEeeccCCCC
Q psy17231 89 VFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------------ISSTYKTSCKTGEG 143 (189)
Q Consensus 89 v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------~~~~~~~Sa~~~~~ 143 (189)
|+|+++. +++..+ ..+.. .++|+++|+||+|+... ..+++++||++|.|
T Consensus 80 v~d~~~~~~~~~~~~~----~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (168)
T cd01887 80 VVAADDGVMPQTIEAI----KLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEG 153 (168)
T ss_pred EEECCCCccHHHHHHH----HHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCC
Confidence 9999874 333322 22222 37999999999885411 13789999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17231 144 VEEMFADIGRQLI 156 (189)
Q Consensus 144 i~~~~~~i~~~i~ 156 (189)
++++++++.+...
T Consensus 154 i~~l~~~l~~~~~ 166 (168)
T cd01887 154 IDDLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987653
No 143
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.89 E-value=6.9e-23 Score=142.18 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=88.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc-----ccccchHHHhcCCc
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME-----RVASITSSYYKFAE 84 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~ 84 (189)
||+++|++|||||||+++|.+..+. + .+|.+.+ +. -.+||+||+. .+..+.. .++.+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~--~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--Y--KKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALIV-TAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--c--ccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHHH-HhhcCC
Confidence 8999999999999999999877642 1 3333222 11 1689999973 2333323 478999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
++++|||++++.++.. ..|... . ..|+++|+||+|+.+. ..+++++||++|.|++++|+
T Consensus 65 ~vilv~d~~~~~s~~~-~~~~~~----~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 65 VIALVQSATDPESRFP-PGFASI----F-VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEEEecCCCCCcCCC-hhHHHh----c-cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 9999999999988754 334332 1 3599999999987421 12689999999999999999
Q ss_pred HHH
Q psy17231 150 DIG 152 (189)
Q Consensus 150 ~i~ 152 (189)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 144
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.89 E-value=1.4e-21 Score=137.17 Aligned_cols=139 Identities=22% Similarity=0.210 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------hHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI--------TSSYY 80 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 80 (189)
++|+++|++|+|||||++++.+........ .++...+.....+... ...+.+|||||..++... ....+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSD-IAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccC-CCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 589999999999999999999776432221 2222223333334443 357899999998665432 23466
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------CCceEEeeccCCCCHHHHHHHHH
Q psy17231 81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
..+|++++|+|++++.+......+.. ..+.|+++|+||.|+... ..+++++||+++.|++++++++.
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 153 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALL 153 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHH
Confidence 78999999999998877766554433 347999999999997532 23799999999999999999987
Q ss_pred HHH
Q psy17231 153 RQL 155 (189)
Q Consensus 153 ~~i 155 (189)
+.+
T Consensus 154 ~~~ 156 (157)
T cd04164 154 ELA 156 (157)
T ss_pred Hhh
Confidence 653
No 145
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.88 E-value=5e-22 Score=145.00 Aligned_cols=136 Identities=14% Similarity=0.156 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh--CCCCCCCC----------CcccceeeeeEEEEEECCeEEEEEEEeCCCccccccch
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY--DTFISSSS----------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASIT 76 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~--~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 76 (189)
-+|+++|.+|+|||||+++|.. +.+..... ...+.+.++......+......+.+|||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999987 44433221 11223444444444444456789999999999999999
Q ss_pred HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc-----------------------cCCce
Q psy17231 77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN-----------------------LISST 133 (189)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-----------------------~~~~~ 133 (189)
..+++.+|++++|+|+++.. +.....++..+.. .++|+++|+||+|+.. ...++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPV 159 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCE
Confidence 99999999999999998742 2333344444433 3799999999988631 12378
Q ss_pred EEeeccCCCCHHHH
Q psy17231 134 YKTSCKTGEGVEEM 147 (189)
Q Consensus 134 ~~~Sa~~~~~i~~~ 147 (189)
+++||++|.|+.++
T Consensus 160 v~~Sa~~g~~~~~~ 173 (194)
T cd01891 160 LYASAKNGWASLNL 173 (194)
T ss_pred EEeehhcccccccc
Confidence 99999999888654
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.88 E-value=2.4e-21 Score=134.29 Aligned_cols=137 Identities=36% Similarity=0.598 Sum_probs=108.9
Q ss_pred EEcCCCCCHHHHHHHHHhCCC-CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEe
Q psy17231 13 LCGEYGVGKSSLFRRYAYDTF-ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFS 91 (189)
Q Consensus 13 i~G~~g~GKTtli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (189)
++|++|+|||||++++..... .... .++. .+..............+.+||+||+..+...+...+..++++++|+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~--~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 77 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEY--ETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYD 77 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCccc--ccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEE
Confidence 589999999999999998776 2222 3333 45555566665667889999999998888877889999999999999
Q ss_pred CCChhhHHHHHHHHHH--HHHhCCCCcEEEEeeccccccc----------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231 92 LDNAASFHVLSQHLLE--IVTYAENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 92 ~~~~~s~~~~~~~~~~--~~~~~~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
++++.++.....|... ......+.|+++++||+|.... ..+++++|++++.|++++++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 78 VTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 9999999888877322 2223378999999999886432 23789999999999999999875
No 147
>KOG0071|consensus
Probab=99.88 E-value=8e-22 Score=131.59 Aligned_cols=143 Identities=17% Similarity=0.383 Sum_probs=121.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.++|+++|..++||||++.+|.-+... ...||+|++....++. .++|++||.+|+...+..|..++.+..+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~---~~ipTvGFnvetVtyk----N~kfNvwdvGGqd~iRplWrhYy~gtqg 87 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV---TTIPTVGFNVETVTYK----NVKFNVWDVGGQDKIRPLWRHYYTGTQG 87 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc---ccccccceeEEEEEee----eeEEeeeeccCchhhhHHHHhhccCCce
Confidence 35789999999999999999999866532 2377888777665543 4789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccCC------------------ceEEeeccCCCCHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLIS------------------STYKTSCKTGEGVE 145 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~~------------------~~~~~Sa~~~~~i~ 145 (189)
+|||.|.++++..++.+..+.++.... .+.|++|.+||+|++.... -+..+||.+|.++.
T Consensus 88 lIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 88 LIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence 999999999999999988888877664 7899999999999876532 34668999999999
Q ss_pred HHHHHHHHHH
Q psy17231 146 EMFADIGRQL 155 (189)
Q Consensus 146 ~~~~~i~~~i 155 (189)
|-|.|+++.+
T Consensus 168 eglswlsnn~ 177 (180)
T KOG0071|consen 168 EGLSWLSNNL 177 (180)
T ss_pred HHHHHHHhhc
Confidence 9999998754
No 148
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.88 E-value=2.8e-21 Score=136.09 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=98.4
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------chHHHhc--CCc
Q psy17231 13 LCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------ITSSYYK--FAE 84 (189)
Q Consensus 13 i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~~ 84 (189)
++|.+|+|||||++++.+..+.... .++...+.....+.+++ ..+.+|||||+.++.. +...++. .++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~--~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d 76 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGN--WPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPD 76 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccC--CCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCc
Confidence 5899999999999999887644333 23333344445555554 4789999999877654 2455554 899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
++++|+|+++++... .|...+... ++|+++|+||+|+... ..+++++||++|.|+++++++
T Consensus 77 ~vi~v~d~~~~~~~~---~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 77 LIVNVVDATNLERNL---YLTLQLLEL--GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEEEeeCCcchhHH---HHHHHHHHc--CCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 999999998865432 344444443 7999999999886432 237999999999999999999
Q ss_pred HHHHH
Q psy17231 151 IGRQL 155 (189)
Q Consensus 151 i~~~i 155 (189)
+.+.+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 88763
No 149
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=3.4e-21 Score=155.00 Aligned_cols=147 Identities=20% Similarity=0.158 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc--ccchH------HHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV--ASITS------SYY 80 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~~ 80 (189)
.+|+++|.+|+|||||+|+|.+..+.....+..|. +.....+.+.+. ..+.+|||+|..+. ...+. ..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTl--d~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~ 274 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATL--DPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQET 274 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCc--CCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987654434334443 444444444432 25789999998432 12222 235
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc----------CCc-eEEeeccCCCCHHHHH
Q psy17231 81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL----------ISS-TYKTSCKTGEGVEEMF 148 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~----------~~~-~~~~Sa~~~~~i~~~~ 148 (189)
..+|++++|+|++++.+++.+..|...+.... .++|+++|+||+|+... ..+ ++.+||++|.|+++++
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~ 354 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLF 354 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHH
Confidence 78999999999999988877755544444332 47999999999997531 112 4889999999999999
Q ss_pred HHHHHHHHHh
Q psy17231 149 ADIGRQLILS 158 (189)
Q Consensus 149 ~~i~~~i~~~ 158 (189)
+++.+.+...
T Consensus 355 e~I~~~l~~~ 364 (426)
T PRK11058 355 QALTERLSGE 364 (426)
T ss_pred HHHHHHhhhc
Confidence 9999988543
No 150
>PRK04213 GTP-binding protein; Provisional
Probab=99.88 E-value=4e-22 Score=146.18 Aligned_cols=143 Identities=18% Similarity=0.190 Sum_probs=93.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc-----------ccccc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM-----------ERVAS 74 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~-----------~~~~~ 74 (189)
.+.++|+++|++|||||||+++|.+..+.... .++. ++....+... .+.+|||||. +.+..
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~--~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGK--RPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKD 78 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHH
Confidence 35689999999999999999999987764333 2332 3333333332 5799999993 44444
Q ss_pred chHHHhc----CCcEEEEEEeCCChhhH-H--------HH-HHHHHHHHHhCCCCcEEEEeeccccccc-----------
Q psy17231 75 ITSSYYK----FAEAAILVFSLDNAASF-H--------VL-SQHLLEIVTYAENAKIFLCGNNEQCHNL----------- 129 (189)
Q Consensus 75 ~~~~~~~----~~~~~i~v~d~~~~~s~-~--------~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------- 129 (189)
.+..++. .++++++|+|.++...+ + .. ...+..+.. .++|+++|+||+|+.+.
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~ 156 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNRDEVLDEIAER 156 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcHHHHHHHHHHH
Confidence 4444443 34677778877543211 0 00 111222222 37999999999997321
Q ss_pred -C---------CceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231 130 -I---------SSTYKTSCKTGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 130 -~---------~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 159 (189)
. .+++++||++| |++++++++.+.+....
T Consensus 157 ~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 157 LGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred hcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 1 14799999999 99999999998875433
No 151
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.1e-21 Score=160.56 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=102.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--------cccchHHH
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER--------VASITSSY 79 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 79 (189)
..+|+|+|.+|||||||+|+|.+....... ..+++..+.......+.+ ..+.+|||||++. +......+
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 468999999999999999999987642221 133333344444445554 3678999999763 22234557
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHHHHH
Q psy17231 80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~~~~ 148 (189)
++.+|++++|+|+++..++.. ..+...+.. .++|+++|+||+|+... ....+++||++|.|++++|
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLL 191 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHH
Confidence 889999999999998755432 233333333 37999999999997431 1145799999999999999
Q ss_pred HHHHHHHHH
Q psy17231 149 ADIGRQLIL 157 (189)
Q Consensus 149 ~~i~~~i~~ 157 (189)
+++++.+.+
T Consensus 192 ~~i~~~l~~ 200 (472)
T PRK03003 192 DAVLAALPE 200 (472)
T ss_pred HHHHhhccc
Confidence 999988754
No 152
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=1.8e-21 Score=148.89 Aligned_cols=141 Identities=18% Similarity=0.112 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------chHHHhc
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--------ITSSYYK 81 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 81 (189)
+|+++|.+|||||||+|+|.+..+........|+. +.........+ .++.+|||||..+... .....+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-NRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-CcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999887643333233332 22222222222 4689999999754321 1234567
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHH
Q psy17231 82 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~ 146 (189)
.+|++++|+|+++..+.+ ..++..+... +.|+++|+||+|+... ..+++++||++|.|+++
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQNL--KRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHhc--CCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 899999999999876654 3344444333 7999999999986421 12689999999999999
Q ss_pred HHHHHHHHHHH
Q psy17231 147 MFADIGRQLIL 157 (189)
Q Consensus 147 ~~~~i~~~i~~ 157 (189)
+++++.+.+..
T Consensus 155 L~~~l~~~l~~ 165 (270)
T TIGR00436 155 LAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHhCCC
Confidence 99999887643
No 153
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.87 E-value=4.3e-21 Score=149.93 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc----cchHH---Hhc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA----SITSS---YYK 81 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~~---~~~ 81 (189)
..|+++|.+|||||||++++..........+..|. ......+.+.+ ...+.+||+||..+.. .+... .+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~--~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTL--VPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc--CCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 47899999999999999999977643332223332 33333444443 3578999999975322 23333 345
Q ss_pred CCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc--------------CCceEEeeccCC
Q psy17231 82 FAEAAILVFSLDNA---ASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTG 141 (189)
Q Consensus 82 ~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~ 141 (189)
.++++++|+|+++. +.++.+..|..++..+. .++|+++|+||+|+... ..+++++||+++
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 79999999999986 67788888887776653 47999999999996321 236899999999
Q ss_pred CCHHHHHHHHHHHH
Q psy17231 142 EGVEEMFADIGRQL 155 (189)
Q Consensus 142 ~~i~~~~~~i~~~i 155 (189)
.|++++++++.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999988754
No 154
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.87 E-value=2.7e-21 Score=157.05 Aligned_cols=142 Identities=20% Similarity=0.224 Sum_probs=106.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------hH
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFI-SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI--------TS 77 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~ 77 (189)
..++|+++|.+|+|||||+|+|.+.... ....+..| .+.....+.+++ ..+.+|||||..++... ..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT--~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~ 289 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTT--RDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSR 289 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcc--cccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence 4589999999999999999999987642 22222222 344455555555 46799999998765432 22
Q ss_pred HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------CCceEEeeccCCCCHHHHHHH
Q psy17231 78 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
..+..+|++++|+|++++.+++....|.. ..+.|+++|+||+|+... ..+++++||++|.|+++++++
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~~~~~~~~i~iSAktg~GI~~L~~~ 364 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLEEENGKPVIRISAKTGEGIDELREA 364 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhhhccCCceEEEEeeCCCCHHHHHHH
Confidence 35788999999999999887776554443 347999999999998542 236899999999999999999
Q ss_pred HHHHHHH
Q psy17231 151 IGRQLIL 157 (189)
Q Consensus 151 i~~~i~~ 157 (189)
+.+.+..
T Consensus 365 L~~~l~~ 371 (449)
T PRK05291 365 IKELAFG 371 (449)
T ss_pred HHHHHhh
Confidence 9888753
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.87 E-value=7.7e-21 Score=153.73 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=107.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------hHH
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI--------TSS 78 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 78 (189)
+.++|+++|++|||||||+|+|.+........ .++...+.....+.+++ ..+.+|||||+.++... ...
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~-~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSD-IKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 46899999999999999999999865422222 22333455556666665 45799999998665432 235
Q ss_pred HhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------CCceEEeeccCCCCHHHHHH
Q psy17231 79 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++.+|++++|+|++++.+++.. |+..+.. .++|+++|+||+|+... ..+++++||++ .||+++|+
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~~~~~~~~~~~~~~~~vSak~-~gI~~~~~ 353 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKINSLEFFVSSKVLNSSNLSAKQ-LKIKALVD 353 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCcchhhhhhhcCCceEEEEEec-CCHHHHHH
Confidence 67899999999999998877665 7666543 37899999999997432 12578999998 69999999
Q ss_pred HHHHHHHHh
Q psy17231 150 DIGRQLILS 158 (189)
Q Consensus 150 ~i~~~i~~~ 158 (189)
.+.+.+.+.
T Consensus 354 ~L~~~i~~~ 362 (442)
T TIGR00450 354 LLTQKINAF 362 (442)
T ss_pred HHHHHHHHH
Confidence 998888654
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=6.5e-21 Score=156.05 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=108.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----------cccch
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----------VASIT 76 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~ 76 (189)
..++|+++|.+|||||||+++|.+........ .++...+.....+..++. .+.+|||||..+ +..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~-~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDD-VAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 46899999999999999999999876532222 233334555556666664 468999999632 22221
Q ss_pred -HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------CCceEEee
Q psy17231 77 -SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISSTYKTS 137 (189)
Q Consensus 77 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~~~~~S 137 (189)
...++.+|++++|+|+++..++..+. ++..+.. .++|+|+|+||+|+... ..+++++|
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 23568999999999999988777664 4444444 37999999999997320 24789999
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 138 CKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 138 a~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
|++|.|++++|+.+.+.+.+...
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 364 AKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999887765443
No 157
>PRK15494 era GTPase Era; Provisional
Probab=99.87 E-value=4.1e-21 Score=150.95 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=100.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-cccchH-------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER-VASITS------- 77 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~------- 77 (189)
.+..+|+++|.+|||||||+|+|.+..+........|. .+.....+..++ .++.+|||||..+ +..+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tT-r~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTT-RSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCc-cCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 34569999999999999999999988764322212221 233344455554 4689999999853 222221
Q ss_pred HHhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCC
Q psy17231 78 SYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGE 142 (189)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~ 142 (189)
..+.++|++++|+|.++ ++.... .|+..+... +.|.++|+||+|+... ...++++||++|.
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~ 202 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGK 202 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCcc
Confidence 23678999999999665 344453 344444443 5677899999996321 1368999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy17231 143 GVEEMFADIGRQLIL 157 (189)
Q Consensus 143 ~i~~~~~~i~~~i~~ 157 (189)
|++++|+++.+.+..
T Consensus 203 gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 203 NIDGLLEYITSKAKI 217 (339)
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999887654
No 158
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.87 E-value=3.8e-21 Score=140.12 Aligned_cols=146 Identities=19% Similarity=0.140 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC-------CCCCCCCCcccceeeeeEEEEE----------ECCeEEEEEEEeCCCccc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD-------TFISSSSRKSTLGLDNFNKEYK----------VDDRSIQMQLWDTGGMER 71 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~-------~~~~~~~~~~t~~~~~~~~~~~----------~~~~~~~~~i~D~~g~~~ 71 (189)
++|+++|++|+|||||+++|... .......+..|.+.......+. ..+....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 48999999999999999999862 1111111223333333222222 112356889999999876
Q ss_pred cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc-----------------------
Q psy17231 72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN----------------------- 128 (189)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~----------------------- 128 (189)
+..........+|++++|+|+++.........+. +... .+.|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR 157 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5443334456789999999998754333322222 1122 2689999999988531
Q ss_pred -cCCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231 129 -LISSTYKTSCKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 129 -~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 157 (189)
...+++++||++|.|++++++++..++.-
T Consensus 158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 158 FKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred cCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 12368999999999999999999888753
No 159
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=4.7e-21 Score=134.64 Aligned_cols=137 Identities=18% Similarity=0.144 Sum_probs=93.9
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------chHHHhcCC
Q psy17231 12 ILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--------ITSSYYKFA 83 (189)
Q Consensus 12 ~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~ 83 (189)
+++|.+|+|||||+++|.+..........+ ...+.........+ ..+.+|||||..++.. .....++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPG-VTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCC-ceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 479999999999999999765321111122 12233333333333 5789999999887543 334567889
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------C-CceEEeeccCCCCHHHHHHHHH
Q psy17231 84 EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------I-SSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------~-~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
|++++|+|..+..+.... .....+... +.|+++|+||+|+.+. . .+++++|+++|.|+++++++++
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~~--~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRKS--KKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAIL 154 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHhc--CCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHH
Confidence 999999999875443322 122222332 6999999999886531 1 2789999999999999999998
Q ss_pred HH
Q psy17231 153 RQ 154 (189)
Q Consensus 153 ~~ 154 (189)
+.
T Consensus 155 ~~ 156 (157)
T cd01894 155 EL 156 (157)
T ss_pred hh
Confidence 65
No 160
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.86 E-value=4.5e-21 Score=137.30 Aligned_cols=139 Identities=19% Similarity=0.164 Sum_probs=99.2
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----cccch---HHHhcCCcE
Q psy17231 13 LCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----VASIT---SSYYKFAEA 85 (189)
Q Consensus 13 i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~~ 85 (189)
++|++|||||||+++|.+........+..|. ......+.+.+ ...+.+||+||..+ ...+. ...++.+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~--~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTL--EPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceee--cCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 5899999999999999987652222222222 22223333431 35689999999743 22222 345678999
Q ss_pred EEEEEeCCCh------hhHHHHHHHHHHHHHhC--------CCCcEEEEeecccccc---------------cCCceEEe
Q psy17231 86 AILVFSLDNA------ASFHVLSQHLLEIVTYA--------ENAKIFLCGNNEQCHN---------------LISSTYKT 136 (189)
Q Consensus 86 ~i~v~d~~~~------~s~~~~~~~~~~~~~~~--------~~~p~ivv~nK~d~~~---------------~~~~~~~~ 136 (189)
+++|+|+++. .++++...|...+.... .+.|+++|+||+|+.. ....++++
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence 9999999988 57888877777776543 3799999999988632 12378999
Q ss_pred eccCCCCHHHHHHHHHHH
Q psy17231 137 SCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 137 Sa~~~~~i~~~~~~i~~~ 154 (189)
||+++.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998754
No 161
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=1.1e-20 Score=136.67 Aligned_cols=141 Identities=22% Similarity=0.217 Sum_probs=103.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc--------------ccceeeeeEEEEEECCeEEEEEEEeCCCccccccc
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRK--------------STLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI 75 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 75 (189)
+|+++|.+|+|||||++++.+.......... ...........+... ...+.+||+||..++...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 4899999999999999999887665432111 111112222222332 467899999999888888
Q ss_pred hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc---------------------------
Q psy17231 76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------------------- 128 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------------------- 128 (189)
+...++.+|++++|+|+++..... ...++..+.. .+.|+++|+||+|+..
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 888899999999999998765432 2334444333 3799999999988642
Q ss_pred ----cCCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231 129 ----LISSTYKTSCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 129 ----~~~~~~~~Sa~~~~~i~~~~~~i~~~i 155 (189)
...+++++||++|.|++++++++.+.+
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 134789999999999999999998875
No 162
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.86 E-value=1.5e-20 Score=131.10 Aligned_cols=134 Identities=22% Similarity=0.294 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------chHHH--h
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------ITSSY--Y 80 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~--~ 80 (189)
++|+++|.||||||||+|+|.+........+..|. +.....+...+ ..+.++|+||...... +...+ .
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv--~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTV--EKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSS--EEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCe--eeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence 58999999999999999999998866555444443 55566666666 5789999999654432 22223 3
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceEEeeccCCCCHHH
Q psy17231 81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~~~~~i~~ 146 (189)
...|+++.|.|+++.+.- .....++.+. ++|+++|.||+|... ...+++.+||+++.|+++
T Consensus 77 ~~~D~ii~VvDa~~l~r~---l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 77 EKPDLIIVVVDATNLERN---LYLTLQLLEL--GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp TSSSEEEEEEEGGGHHHH---HHHHHHHHHT--TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred cCCCEEEEECCCCCHHHH---HHHHHHHHHc--CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 688999999999885432 2344455555 799999999977432 234999999999999999
Q ss_pred HHHHH
Q psy17231 147 MFADI 151 (189)
Q Consensus 147 ~~~~i 151 (189)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99875
No 163
>KOG1673|consensus
Probab=99.86 E-value=2.7e-21 Score=131.26 Aligned_cols=151 Identities=20% Similarity=0.310 Sum_probs=132.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
.+||.++|++.+|||||+-++.++.+...+ ..+.|+++..+++...+..+.+.+||..|++++....+....++-+++
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~--~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEY--TQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHH--HHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 689999999999999999999999886554 788899999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc--------------------ccCCceEEeeccCCCCHHHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH--------------------NLISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~--------------------~~~~~~~~~Sa~~~~~i~~~ 147 (189)
++||++.++++..+..|+++.+......-=|+||+|.|.. -+..+.|.||+..+.|+..+
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 9999999999999999999999887333335789995532 12338899999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy17231 148 FADIGRQLILSNR 160 (189)
Q Consensus 148 ~~~i~~~i~~~~~ 160 (189)
|+-+..++.+-.-
T Consensus 178 FK~vlAklFnL~~ 190 (205)
T KOG1673|consen 178 FKIVLAKLFNLPW 190 (205)
T ss_pred HHHHHHHHhCCce
Confidence 9999888876543
No 164
>KOG0076|consensus
Probab=99.86 E-value=9.8e-22 Score=135.67 Aligned_cols=149 Identities=23% Similarity=0.331 Sum_probs=121.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCC---CC--CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDT---FI--SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY 80 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~---~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 80 (189)
+..+.++|+|+.++|||||+.++.... +. ......+|.|.+.....+. ..++.+||..|++..+++|..+|
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~----~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC----NAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec----cceeEEEEcCChHHHHHHHHHHH
Confidence 456899999999999999999985322 11 1123356666665554443 35789999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc-------------------CCceEEeecc
Q psy17231 81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL-------------------ISSTYKTSCK 139 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~-------------------~~~~~~~Sa~ 139 (189)
..+|++++++|++|++.|+........+.... .+.|+++.+||+|+.+. -.++..+||.
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal 170 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL 170 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence 99999999999999999999987777776665 79999999999775433 1378899999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy17231 140 TGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 140 ~~~~i~~~~~~i~~~i~~~ 158 (189)
+|+||++..+|+.+.+.+.
T Consensus 171 ~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 171 TGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hcccHHHHHHHHHHHHhhc
Confidence 9999999999999998766
No 165
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.86 E-value=6.3e-21 Score=159.15 Aligned_cols=147 Identities=20% Similarity=0.186 Sum_probs=109.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC-------CCCCC----CCcccceeeeeEEEE--EE---CCeEEEEEEEeCCCccc
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDT-------FISSS----SRKSTLGLDNFNKEY--KV---DDRSIQMQLWDTGGMER 71 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~-------~~~~~----~~~~t~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~ 71 (189)
.-+++++|+.++|||||+++|.... +.... +.+.+.|.++..... .+ ++..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3489999999999999999998642 11111 001222444444322 22 45568999999999999
Q ss_pred cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC----------------CceEE
Q psy17231 72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI----------------SSTYK 135 (189)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------~~~~~ 135 (189)
|...+...++.+|++++|+|+++..+.+....|..... .++|+++|+||+|+.... .++++
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~ 159 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAIL 159 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEE
Confidence 99888999999999999999998766666665554332 368999999999974220 14799
Q ss_pred eeccCCCCHHHHHHHHHHHHHH
Q psy17231 136 TSCKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 136 ~Sa~~~~~i~~~~~~i~~~i~~ 157 (189)
+||++|.|++++|+++.+.+..
T Consensus 160 vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 160 ASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred eeccCCCCHHHHHHHHHHhCCC
Confidence 9999999999999999887643
No 166
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=2.4e-20 Score=132.83 Aligned_cols=142 Identities=22% Similarity=0.244 Sum_probs=97.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-----------c
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-----------I 75 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~ 75 (189)
++++|+++|.+|+|||||++++.+...........+ ........+..++ ..+.+||+||..+... .
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~ 77 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGT-TRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLR 77 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCC-ccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHH
Confidence 367999999999999999999987664322221111 1122223344444 3578999999754311 0
Q ss_pred hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------CCceEE
Q psy17231 76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------ISSTYK 135 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------~~~~~~ 135 (189)
....+..+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+... ..++++
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 78 TLKAIERADVVLLVIDATEGITEQDL-RIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 12346789999999999988765443 23333333 36999999999886422 147999
Q ss_pred eeccCCCCHHHHHHHHHHH
Q psy17231 136 TSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 136 ~Sa~~~~~i~~~~~~i~~~ 154 (189)
+||+++.|++++++++.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999998764
No 167
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=1.8e-20 Score=158.18 Aligned_cols=144 Identities=18% Similarity=0.254 Sum_probs=107.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+..+|+++|..++|||||+++|....+........|.....+...+...+....+.+|||||++.|..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 45679999999999999999999877665433222332222233333333445789999999999999999999999999
Q ss_pred EEEEEeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CCceEEeeccCC
Q psy17231 86 AILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------ISSTYKTSCKTG 141 (189)
Q Consensus 86 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~~~~~~Sa~~~ 141 (189)
+++|+|+++. ++++.+. .+.. .++|+|+++||+|+... ..+++++||++|
T Consensus 322 aILVVDA~dGv~~QT~E~I~----~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAIN----YIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChhhHHHHH----HHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 9999999873 4444332 2222 37999999999987431 136899999999
Q ss_pred CCHHHHHHHHHHHH
Q psy17231 142 EGVEEMFADIGRQL 155 (189)
Q Consensus 142 ~~i~~~~~~i~~~i 155 (189)
.|++++++++....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999987753
No 168
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.85 E-value=4.2e-20 Score=153.64 Aligned_cols=139 Identities=19% Similarity=0.185 Sum_probs=103.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.++.+|+++|++++|||||+++|....+.....+..| .+.....+.+.+. ..+.+|||||++.|..++...+..+|+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT--~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGIT--QHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCcee--ecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCE
Confidence 4568999999999999999999998777554322222 2333333444332 278999999999999988888999999
Q ss_pred EEEEEeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CCceEEeeccCC
Q psy17231 86 AILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------ISSTYKTSCKTG 141 (189)
Q Consensus 86 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~~~~~~Sa~~~ 141 (189)
+++|+|+++. ++.+.+ ..... .++|+++++||+|+.+. ..+++++||++|
T Consensus 162 aILVVda~dgv~~qT~e~i----~~~~~--~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG 235 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEAI----SHAKA--ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG 235 (587)
T ss_pred EEEEEECCCCCCHhHHHHH----HHHHH--cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence 9999999863 343322 22222 37999999999997431 025899999999
Q ss_pred CCHHHHHHHHHH
Q psy17231 142 EGVEEMFADIGR 153 (189)
Q Consensus 142 ~~i~~~~~~i~~ 153 (189)
.|++++++++..
T Consensus 236 eGI~eLl~~I~~ 247 (587)
T TIGR00487 236 DGIDELLDMILL 247 (587)
T ss_pred CChHHHHHhhhh
Confidence 999999999864
No 169
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.85 E-value=7.8e-20 Score=134.27 Aligned_cols=139 Identities=15% Similarity=0.227 Sum_probs=99.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC-cEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA-EAAIL 88 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~i~ 88 (189)
+|+++|++|||||||+++|....+..+. . ++..+.........+....+.+||+||+.++...+..+++.+ +++|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~--~-s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~ 78 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTV--T-SIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVF 78 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcc--C-cEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEE
Confidence 6899999999999999999988765443 2 222222222222123356789999999999988888888898 99999
Q ss_pred EEeCCCh-hhHHHHHHHHHHHHHhC----CCCcEEEEeecccccccCCceEEeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 89 VFSLDNA-ASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 89 v~d~~~~-~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
|+|+++. +++.....|+..+.... .++|+++++||+|+.. +..-.-+.+.++.-+..+...+.
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~---------a~~~~~i~~~le~ei~~~~~~r~ 146 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT---------AKPAKKIKEQLEKELNTLRESRS 146 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc---------cCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999987 77888877776654432 5899999999999865 33333455555554555554443
No 170
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.85 E-value=1.6e-20 Score=132.74 Aligned_cols=129 Identities=15% Similarity=0.188 Sum_probs=90.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccch----HHHhcCCcE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASIT----SSYYKFAEA 85 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~~~ 85 (189)
+|+++|.+|+|||||+|++.+.... . ..+. ...+... .+||+||.......+ ...++.+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~--~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~ 67 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A--RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDM 67 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C--ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCE
Confidence 7999999999999999998754311 1 1121 1122221 379999974222211 223679999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
+++|+|+++.+++ +..|+..+ ..++|+++++||.|+... ..+++++||++|.|++++|+++
T Consensus 68 il~v~d~~~~~s~--~~~~~~~~---~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 68 LIYVHGANDPESR--LPAGLLDI---GVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred EEEEEeCCCcccc--cCHHHHhc---cCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHH
Confidence 9999999988765 33454443 236899999999886421 1389999999999999999999
Q ss_pred HHHHHHh
Q psy17231 152 GRQLILS 158 (189)
Q Consensus 152 ~~~i~~~ 158 (189)
.+.+.+.
T Consensus 143 ~~~~~~~ 149 (158)
T PRK15467 143 ASLTKQE 149 (158)
T ss_pred HHhchhh
Confidence 8877544
No 171
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=6.4e-20 Score=146.99 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=106.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc----ccchHH---HhcC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV----ASITSS---YYKF 82 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~~~~ 82 (189)
.|.++|.||||||||++++.+.+......+..|. ......+.+.+ ...+.+||+||..+. ..+... .+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl--~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTL--VPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCccee--ceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 7899999999999999999987643333223333 22222333331 246899999997532 122233 3556
Q ss_pred CcEEEEEEeCCCh---hhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc-----------CCceEEeeccCCCCHH
Q psy17231 83 AEAAILVFSLDNA---ASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 83 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~ 145 (189)
++++++|+|+++. +.++....|...+..+. .++|++||+||+|+... ..+++++||+++.|++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~ 316 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLD 316 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHH
Confidence 8999999999864 66777777777777654 47999999999996321 1368999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy17231 146 EMFADIGRQLILSN 159 (189)
Q Consensus 146 ~~~~~i~~~i~~~~ 159 (189)
++++++.+.+.+..
T Consensus 317 eL~~~L~~~l~~~~ 330 (424)
T PRK12297 317 ELLYAVAELLEETP 330 (424)
T ss_pred HHHHHHHHHHHhCc
Confidence 99999998876654
No 172
>KOG3883|consensus
Probab=99.85 E-value=1.2e-19 Score=122.88 Aligned_cols=160 Identities=21% Similarity=0.348 Sum_probs=125.5
Q ss_pred CCCCCC-CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE-CCeEEEEEEEeCCCcccc-ccchH
Q psy17231 1 MASIKV-PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV-DDRSIQMQLWDTGGMERV-ASITS 77 (189)
Q Consensus 1 m~~~~~-~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~-~~~~~ 77 (189)
|-+.+| +-.|++++|..++|||++++++..+......+..+|+. +.+...+.. ++-.-.+.++||.|...+ ..+-.
T Consensus 1 ~~~~kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLpr 79 (198)
T KOG3883|consen 1 MLNAKMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPR 79 (198)
T ss_pred CcchhhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhH
Confidence 344454 45899999999999999999999888887887788875 555554443 344557899999998877 45667
Q ss_pred HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccC
Q psy17231 78 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKT 140 (189)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~ 140 (189)
.++.-+|++++||+..|++||+.+.-.-..+.... ..+|++|++||+|..+- ....+++++.+
T Consensus 80 hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~d 159 (198)
T KOG3883|consen 80 HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMD 159 (198)
T ss_pred hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEecc
Confidence 78889999999999999999988854444444433 57999999999887432 12779999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhh
Q psy17231 141 GEGVEEMFADIGRQLILSNRS 161 (189)
Q Consensus 141 ~~~i~~~~~~i~~~i~~~~~~ 161 (189)
...+-|.|-++...+-..+.+
T Consensus 160 R~sL~epf~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 160 RPSLYEPFTYLASRLHQPQSK 180 (198)
T ss_pred chhhhhHHHHHHHhccCCccc
Confidence 999999999999888766543
No 173
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=8.3e-20 Score=148.26 Aligned_cols=147 Identities=19% Similarity=0.206 Sum_probs=105.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccch---------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASIT--------- 76 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------- 76 (189)
...++++++|.+|+|||||+++|.+...........| ..+.....+..++. .+.+|||||..++....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gt-t~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~ 246 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGT-TRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVL 246 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCc-eECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHH
Confidence 3458999999999999999999997654322221222 22333444445443 68999999976544321
Q ss_pred --HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc-cc------------------CCceEE
Q psy17231 77 --SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH-NL------------------ISSTYK 135 (189)
Q Consensus 77 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~-~~------------------~~~~~~ 135 (189)
...++.+|++++|+|+++..+..... ++..+... ++|+++|+||+|+. .. ..++++
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLR-IAGLILEA--GKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc--CCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEE
Confidence 24678899999999999876655543 33333333 79999999999974 10 138899
Q ss_pred eeccCCCCHHHHHHHHHHHHHHh
Q psy17231 136 TSCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 136 ~Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
+||++|.|++++|+++.+.+...
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998876644
No 174
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.84 E-value=1.2e-19 Score=128.25 Aligned_cols=142 Identities=18% Similarity=0.180 Sum_probs=96.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------chHH
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--------ITSS 78 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~ 78 (189)
...+|+++|++|+|||||++++.+...........+.. ...... .......+.+||+||...... ....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 78 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS 78 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCcee-ceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH
Confidence 46789999999999999999998776533222122211 111111 222246789999999764332 2344
Q ss_pred HhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------CCceEEeeccCCC
Q psy17231 79 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGE 142 (189)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~ 142 (189)
.+..+|++++|+|++++.+ .....+...+... +.|+++|+||+|+... ..+++++|++++.
T Consensus 79 ~~~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 155 (168)
T cd04163 79 ALKDVDLVLFVVDASEPIG-EGDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGE 155 (168)
T ss_pred HHHhCCEEEEEEECCCccC-chHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCC
Confidence 5788999999999998721 1122333333333 6999999999887521 2488999999999
Q ss_pred CHHHHHHHHHHH
Q psy17231 143 GVEEMFADIGRQ 154 (189)
Q Consensus 143 ~i~~~~~~i~~~ 154 (189)
+++++++++.+.
T Consensus 156 ~~~~l~~~l~~~ 167 (168)
T cd04163 156 NVDELLEEIVKY 167 (168)
T ss_pred ChHHHHHHHHhh
Confidence 999999998654
No 175
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=1.2e-19 Score=147.46 Aligned_cols=138 Identities=20% Similarity=0.251 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--------cccchHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER--------VASITSSYY 80 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 80 (189)
.+|+++|.+|||||||+|+|.+........ .+....+.......+++ ..+.+|||||+.. +.......+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 589999999999999999999776422211 22222344444555555 6789999999876 222234567
Q ss_pred cCCcEEEEEEeCCChhhH--HHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHHHH
Q psy17231 81 KFAEAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~~~ 147 (189)
..+|++++|+|+++..+. ..+..|+.. . ++|+++|+||+|.... ...++++||++|.|++++
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~~---~--~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l 153 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADEEIAKILRK---S--NKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDL 153 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH---c--CCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHH
Confidence 899999999999875332 233444432 2 7999999999996431 125899999999999999
Q ss_pred HHHHHHH
Q psy17231 148 FADIGRQ 154 (189)
Q Consensus 148 ~~~i~~~ 154 (189)
++++...
T Consensus 154 ~~~I~~~ 160 (435)
T PRK00093 154 LDAILEE 160 (435)
T ss_pred HHHHHhh
Confidence 9998873
No 176
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.83 E-value=1.9e-19 Score=153.25 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=104.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+...|+++|..++|||||+++|....+..... ..+..+.....+.+.+ ..+.||||||++.|..++...+..+|
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~--~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aD 362 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEA--GGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTD 362 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccc--CceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCC
Confidence 3567899999999999999999998777654332 2221122223344443 57899999999999998888899999
Q ss_pred EEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CCceEEeeccC
Q psy17231 85 AAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------ISSTYKTSCKT 140 (189)
Q Consensus 85 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~~~~~~Sa~~ 140 (189)
++++|+|+++ +++.+.+ ..+.. .++|+||++||+|+.+. ..+++++||++
T Consensus 363 iaILVVdAddGv~~qT~e~i----~~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAkt 436 (787)
T PRK05306 363 IVVLVVAADDGVMPQTIEAI----NHAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKT 436 (787)
T ss_pred EEEEEEECCCCCCHhHHHHH----HHHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCC
Confidence 9999999987 3444332 22222 37999999999997431 13689999999
Q ss_pred CCCHHHHHHHHHHH
Q psy17231 141 GEGVEEMFADIGRQ 154 (189)
Q Consensus 141 ~~~i~~~~~~i~~~ 154 (189)
|.|++++|+++...
T Consensus 437 G~GI~eLle~I~~~ 450 (787)
T PRK05306 437 GEGIDELLEAILLQ 450 (787)
T ss_pred CCCchHHHHhhhhh
Confidence 99999999998753
No 177
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=1.8e-19 Score=146.24 Aligned_cols=147 Identities=16% Similarity=0.095 Sum_probs=103.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc----cc---hHHHhc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA----SI---TSSYYK 81 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~---~~~~~~ 81 (189)
..|+|+|.||+|||||+|+|.+.+......+..|+ ......+...+ ..+.+||+||..+.. .+ ....+.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl--~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTL--VPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccc--cceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 47899999999999999999977654333333443 33344444444 578999999964321 11 223456
Q ss_pred CCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhC------------CCCcEEEEeeccccccc--------------CC
Q psy17231 82 FAEAAILVFSLDNA----ASFHVLSQHLLEIVTYA------------ENAKIFLCGNNEQCHNL--------------IS 131 (189)
Q Consensus 82 ~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~------------~~~p~ivv~nK~d~~~~--------------~~ 131 (189)
.++++++|+|+++. +.++.+..|..++..+. .++|+|||+||+|+... ..
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~ 315 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGW 315 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCC
Confidence 79999999999753 34444444444443321 36999999999886421 23
Q ss_pred ceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231 132 STYKTSCKTGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 132 ~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 159 (189)
+++++||+++.|++++++++.+.+...+
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 7899999999999999999998886654
No 178
>PRK00089 era GTPase Era; Reviewed
Probab=99.83 E-value=3.2e-19 Score=137.98 Aligned_cols=146 Identities=19% Similarity=0.188 Sum_probs=99.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------ch
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--------IT 76 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~ 76 (189)
+++.-.|+++|++|||||||+|+|.+.+.........|.. .........+ ..++.+|||||...... ..
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~-~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~ 78 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-HRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAA 78 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccc-ccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHH
Confidence 3455679999999999999999999877644333233321 1111222222 36889999999754322 22
Q ss_pred HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------CCceEEeeccC
Q psy17231 77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------ISSTYKTSCKT 140 (189)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~ 140 (189)
...+..+|++++|+|+++.. .....++...... .+.|+++|+||.|+... ..+++.+||++
T Consensus 79 ~~~~~~~D~il~vvd~~~~~--~~~~~~i~~~l~~-~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~ 155 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEKI--GPGDEFILEKLKK-VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALK 155 (292)
T ss_pred HHHHhcCCEEEEEEeCCCCC--ChhHHHHHHHHhh-cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCC
Confidence 34567899999999998832 1222222222222 26899999999997511 24789999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy17231 141 GEGVEEMFADIGRQLI 156 (189)
Q Consensus 141 ~~~i~~~~~~i~~~i~ 156 (189)
+.|++++++++.+.+.
T Consensus 156 ~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 156 GDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCHHHHHHHHHHhCC
Confidence 9999999999988764
No 179
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.82 E-value=2.8e-19 Score=131.36 Aligned_cols=143 Identities=14% Similarity=0.098 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCcccceeeeeEEEEE-----------------------EC--C----
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTF---ISSSSRKSTLGLDNFNKEYK-----------------------VD--D---- 56 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~---~~~~~~~~t~~~~~~~~~~~-----------------------~~--~---- 56 (189)
++|.++|+.|+|||||+..+..... ..+.....++...+....+. .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999964411 11111111111110000000 00 0
Q ss_pred eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---
Q psy17231 57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--- 129 (189)
Q Consensus 57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--- 129 (189)
....+.+||+||+++|.......+..+|++++|+|++++ ++++.+.. +... ...|+++|+||.|+...
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~----~~~~-~~~~iiivvNK~Dl~~~~~~ 155 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAA----LEIM-GLKHIIIVQNKIDLVKEEQA 155 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHH----HHHc-CCCcEEEEEEchhccCHHHH
Confidence 125789999999998877777778889999999999873 33333322 2222 23589999999886421
Q ss_pred -----------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 130 -----------------ISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 130 -----------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
..+++++||++|.|++++|+++.+.+.
T Consensus 156 ~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 156 LENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 236899999999999999999987653
No 180
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=5.8e-19 Score=140.67 Aligned_cols=146 Identities=18% Similarity=0.117 Sum_probs=106.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------chHHHhcC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------ITSSYYKF 82 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~ 82 (189)
-|.|+|.||||||||+|+|.+.+......+..|. ......+...+ ...+.++|+||..+-.. .....+..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~--~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTL--VPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCcc--CcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 6889999999999999999977653333333333 33333444432 23589999999754221 12235778
Q ss_pred CcEEEEEEeCC---ChhhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc--------------C--CceEEeeccC
Q psy17231 83 AEAAILVFSLD---NAASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL--------------I--SSTYKTSCKT 140 (189)
Q Consensus 83 ~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~--------------~--~~~~~~Sa~~ 140 (189)
++++++|+|++ +.+.++.+..|+..+..+. .++|+++|+||+|+... . .+++.+||++
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 99999999998 4566777788888777653 46999999999986321 1 2689999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy17231 141 GEGVEEMFADIGRQLILS 158 (189)
Q Consensus 141 ~~~i~~~~~~i~~~i~~~ 158 (189)
+.|++++++++.+.+.+.
T Consensus 318 g~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 318 GLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CcCHHHHHHHHHHHhhhC
Confidence 999999999999888654
No 181
>KOG0072|consensus
Probab=99.82 E-value=2.4e-20 Score=125.10 Aligned_cols=145 Identities=23% Similarity=0.418 Sum_probs=117.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.++|+++|..|+||||++.++.-++... ..|+++++.....+ . ..++++||..|+-.....|..++.+.++
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvt---tkPtigfnve~v~y--K--NLk~~vwdLggqtSirPyWRcYy~dt~a 88 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVT---TKPTIGFNVETVPY--K--NLKFQVWDLGGQTSIRPYWRCYYADTDA 88 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccc---cCCCCCcCcccccc--c--cccceeeEccCcccccHHHHHHhcccce
Confidence 367999999999999999999998776543 36777766655443 3 3688999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~ 145 (189)
+|+|+|.+|++........+..+.... ....++|++||+|.... ...+|++||.+|+|++
T Consensus 89 vIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 89 VIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 999999999987766655555555443 46788899999885433 2378999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17231 146 EMFADIGRQLIL 157 (189)
Q Consensus 146 ~~~~~i~~~i~~ 157 (189)
+.++|+++.+..
T Consensus 169 ~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 169 PAMDWLQRPLKS 180 (182)
T ss_pred HHHHHHHHHHhc
Confidence 999999998864
No 182
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.82 E-value=5.5e-19 Score=128.87 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=93.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----------ccccch
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME----------RVASIT 76 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~ 76 (189)
..++|+++|++|+|||||+++|.+..+.... .++.+.+.....+.. ...+.+|||||.. ++..+.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~--~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLART--SKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccc--cCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 4589999999999999999999987643333 233332332222222 2578999999953 222233
Q ss_pred HHHhcCC---cEEEEEEeCCChhhHHH--HHHHHHHHHHhCCCCcEEEEeeccccccc-----------------CCceE
Q psy17231 77 SSYYKFA---EAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------ISSTY 134 (189)
Q Consensus 77 ~~~~~~~---~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------~~~~~ 134 (189)
..++..+ +++++|+|.+++.+... +..|+ .. .+.|+++++||.|+... ..+++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---KE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---HH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 3444433 67888888876543322 22222 22 37999999999885321 24789
Q ss_pred EeeccCCCCHHHHHHHHHHHHH
Q psy17231 135 KTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 135 ~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
++||++|.|++++++.+.+.+.
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999877653
No 183
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=2.4e-19 Score=149.82 Aligned_cols=148 Identities=21% Similarity=0.194 Sum_probs=106.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC--CC---------CCCCCcccceeeeeEEE--EEE---CCeEEEEEEEeCCCccc
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDT--FI---------SSSSRKSTLGLDNFNKE--YKV---DDRSIQMQLWDTGGMER 71 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~--~~---------~~~~~~~t~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~ 71 (189)
.-+++++|..++|||||+.+|.... +. +..+.+.+.|.++.... +.+ ++..+.+++|||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 4589999999999999999997531 11 11111122233333322 222 45568899999999999
Q ss_pred cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC----------------CceEE
Q psy17231 72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI----------------SSTYK 135 (189)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------~~~~~ 135 (189)
|...+...++.+|++++|+|+++.........|.... . .++|+++|+||.|+.+.. ..++.
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~--~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~ 163 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E--NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVL 163 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H--CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEE
Confidence 9988899999999999999998865554554554322 2 378999999999974321 13799
Q ss_pred eeccCCCCHHHHHHHHHHHHHHh
Q psy17231 136 TSCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 136 ~Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
+||++|.|++++++++.+.+...
T Consensus 164 iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 164 VSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred EecCCCCCHHHHHHHHHHhCccc
Confidence 99999999999999998877543
No 184
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=3.2e-19 Score=144.86 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=98.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--------cccchHHHhc
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER--------VASITSSYYK 81 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 81 (189)
+|+++|.+|||||||+|+|.+........ .+.+..+.......+.+ ..+.+|||||... +.......++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~-~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSD-TPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecC-CCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence 58999999999999999999876322211 22222244444455554 4689999999632 2334456778
Q ss_pred CCcEEEEEEeCCChhhH--HHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHHHHH
Q psy17231 82 FAEAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 82 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~~~~ 148 (189)
.+|++++|+|..+..+. ..+..|+ ++. ++|+++|+||+|.... ..+++++||++|.|+++++
T Consensus 78 ~ad~vl~vvD~~~~~~~~d~~i~~~l---~~~--~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll 152 (429)
T TIGR03594 78 EADVILFVVDGREGLTPEDEEIAKWL---RKS--GKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLL 152 (429)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHH---HHh--CCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHH
Confidence 99999999999874332 2233333 232 7999999999986432 1278999999999999999
Q ss_pred HHHHHHHHH
Q psy17231 149 ADIGRQLIL 157 (189)
Q Consensus 149 ~~i~~~i~~ 157 (189)
+++.+.+..
T Consensus 153 ~~i~~~l~~ 161 (429)
T TIGR03594 153 DAILELLPE 161 (429)
T ss_pred HHHHHhcCc
Confidence 999887744
No 185
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.82 E-value=3e-19 Score=128.76 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=86.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----------cccc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----------VASI 75 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~ 75 (189)
....+|+++|++|+|||||++++.+..+.... .++.+.+.....+..++ .+.+||+||... +..+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~--~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLART--SKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccc--cCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 45789999999999999999999987643222 22333233333333332 589999999532 2222
Q ss_pred hHHHhc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------------CCce
Q psy17231 76 TSSYYK---FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------------ISST 133 (189)
Q Consensus 76 ~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------~~~~ 133 (189)
...+++ .++++++|+|++++-+.... .++..+.. .++|+++++||+|+... ..++
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 233444 35799999999875443333 22233332 37999999999886421 1278
Q ss_pred EEeeccCCCCHH
Q psy17231 134 YKTSCKTGEGVE 145 (189)
Q Consensus 134 ~~~Sa~~~~~i~ 145 (189)
+++||++|+|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999974
No 186
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.81 E-value=1.6e-18 Score=129.78 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=97.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc----c---chHHHhcC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA----S---ITSSYYKF 82 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~---~~~~~~~~ 82 (189)
+++++|++|+|||||+++|.+........+..|. +.....+.+.+ ..+++||+||..+.. . .....++.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~--~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ 77 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTL--TCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVART 77 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccc--cceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence 7899999999999999999977643333223332 33344444544 578999999975433 1 22356889
Q ss_pred CcEEEEEEeCCChh-hHHHHHHHHH----------------------------------------HH-------------
Q psy17231 83 AEAAILVFSLDNAA-SFHVLSQHLL----------------------------------------EI------------- 108 (189)
Q Consensus 83 ~~~~i~v~d~~~~~-s~~~~~~~~~----------------------------------------~~------------- 108 (189)
+|++++|+|+++++ ..+.+...+. .+
T Consensus 78 ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 78 ADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI 157 (233)
T ss_pred CCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence 99999999998765 3332222221 00
Q ss_pred -------------HHhCCCCcEEEEeeccccccc--------CCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231 109 -------------VTYAENAKIFLCGNNEQCHNL--------ISSTYKTSCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 109 -------------~~~~~~~p~ivv~nK~d~~~~--------~~~~~~~Sa~~~~~i~~~~~~i~~~i 155 (189)
......+|+++|+||+|+... ...++++||++|.|++++|+.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLARQPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred ccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 101124799999999997432 23689999999999999999998765
No 187
>KOG4423|consensus
Probab=99.81 E-value=5.2e-22 Score=138.51 Aligned_cols=151 Identities=26% Similarity=0.436 Sum_probs=130.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe-EEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR-SIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
-++++|+|..|+|||+++.+.....+...+ ..|+|.++..+...++.. .+++++||..|+++|..+..-+++.+++.
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~y--RAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHY--RATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHH--HHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 379999999999999999999988875555 888998988877766544 46789999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeecccccc-----------------cCCceEEeeccCCCCH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHN-----------------LISSTYKTSCKTGEGV 144 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~-----------------~~~~~~~~Sa~~~~~i 144 (189)
++|||+++..+|+.+.+|.+++.... .-.|+++..||||+.. ....++++|+|.+.|+
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni 182 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI 182 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence 99999999999999999999987754 3478899999998642 2347899999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy17231 145 EEMFADIGRQLILSNR 160 (189)
Q Consensus 145 ~~~~~~i~~~i~~~~~ 160 (189)
+|+-..+++++.....
T Consensus 183 ~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 183 PEAQRELVEKILVNDE 198 (229)
T ss_pred hHHHHHHHHHHHhhcc
Confidence 9999999998876653
No 188
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=6.6e-19 Score=150.46 Aligned_cols=143 Identities=20% Similarity=0.206 Sum_probs=99.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc--------ccchHHH
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV--------ASITSSY 79 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~ 79 (189)
..+|+|+|.+|||||||+|+|.+........ .+++..+.......+.+ ..+.+|||||.... .......
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~-~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVED-TPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 4689999999999999999999765422111 22222233333333444 46899999997632 2233456
Q ss_pred hcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHHHH
Q psy17231 80 YKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~~~ 147 (189)
+..+|++++|+|+++.- ... ..|...+.. .++|+++|+||+|+... ....+++||++|.|++++
T Consensus 352 ~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eL 427 (712)
T PRK09518 352 VSLADAVVFVVDGQVGL--TSTDERIVRMLRR--AGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDL 427 (712)
T ss_pred HHhCCEEEEEEECCCCC--CHHHHHHHHHHHh--cCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHH
Confidence 78999999999997642 222 234444443 38999999999986421 125688999999999999
Q ss_pred HHHHHHHHHH
Q psy17231 148 FADIGRQLIL 157 (189)
Q Consensus 148 ~~~i~~~i~~ 157 (189)
|+++++.+.+
T Consensus 428 l~~i~~~l~~ 437 (712)
T PRK09518 428 LDEALDSLKV 437 (712)
T ss_pred HHHHHHhccc
Confidence 9999988754
No 189
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.81 E-value=1.4e-18 Score=144.37 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=101.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--cccceeeeeEEEEE------------ECCeEEEEEEEeCCCcccc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSR--KSTLGLDNFNKEYK------------VDDRSIQMQLWDTGGMERV 72 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~--~~t~~~~~~~~~~~------------~~~~~~~~~i~D~~g~~~~ 72 (189)
+..-|+++|.+++|||||+++|.+..+...... ..+++......... ++.....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 455799999999999999999998766432211 22223222211100 0001123889999999999
Q ss_pred ccchHHHhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------
Q psy17231 73 ASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------------- 129 (189)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------- 129 (189)
..++...+..+|++++|+|+++ +++++.+..+ .. .++|+++++||+|+...
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 9988889999999999999987 5565554322 22 27999999999987420
Q ss_pred ---------------------------------CCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231 130 ---------------------------------ISSTYKTSCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 130 ---------------------------------~~~~~~~Sa~~~~~i~~~~~~i~~~i 155 (189)
..+++.+||++|+|++++++++....
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 12779999999999999999876543
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=1.8e-18 Score=147.85 Aligned_cols=146 Identities=21% Similarity=0.207 Sum_probs=104.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----------cccc-
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----------VASI- 75 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~- 75 (189)
...+|+++|.+|||||||+|+|.+...........| ..+.....+.+++. .+.+|||||..+ |..+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gt-T~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGT-TRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCC-CcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence 458999999999999999999998764322221222 23554555556654 467999999642 1111
Q ss_pred hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------CCceEEee
Q psy17231 76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISSTYKTS 137 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~~~~~S 137 (189)
....++.+|++++|+|+++..++..+. ++..+... ++|+++|+||+|+... ..+++.+|
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~~--~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iS 602 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVDA--GRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLS 602 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHHc--CCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEE
Confidence 123467899999999999887776664 34444433 7999999999986421 12558899
Q ss_pred ccCCCCHHHHHHHHHHHHHHh
Q psy17231 138 CKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 138 a~~~~~i~~~~~~i~~~i~~~ 158 (189)
|++|.|++++++.+.+.+.+.
T Consensus 603 Aktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 603 AKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999887753
No 191
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=3.4e-18 Score=139.11 Aligned_cols=146 Identities=19% Similarity=0.206 Sum_probs=101.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc-----------
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI----------- 75 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 75 (189)
..++|+++|.+|+|||||+++|.+........ .+....+.....+..++ ..+.+|||||.......
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 46899999999999999999999765322222 12222233333344444 46789999996543221
Q ss_pred hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------CCceEEee
Q psy17231 76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISSTYKTS 137 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~~~~~S 137 (189)
....++.+|++++|+|++++.+.... .++..+... +.|+++|+||+|+... ..+++++|
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~~--~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDL-RIAGLALEA--GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHHc--CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 12357789999999999987665444 233333333 7999999999986411 24889999
Q ss_pred ccCCCCHHHHHHHHHHHHHHh
Q psy17231 138 CKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 138 a~~~~~i~~~~~~i~~~i~~~ 158 (189)
|++|.|++++++.+.+.....
T Consensus 326 A~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999988766543
No 192
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.80 E-value=1.5e-18 Score=144.88 Aligned_cols=139 Identities=19% Similarity=0.185 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT---FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
+.|+++|.+++|||||+++|.+.. +..+. ..++..+.....+...+ ..+.+||+||+++|.......+..+|+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~--~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~ 76 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEK--KRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDA 76 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHh--cCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCE
Confidence 468999999999999999998632 32232 22333344444455554 688999999999988877788889999
Q ss_pred EEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc---------------------CCceEEeeccC
Q psy17231 86 AILVFSLDN---AASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL---------------------ISSTYKTSCKT 140 (189)
Q Consensus 86 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~---------------------~~~~~~~Sa~~ 140 (189)
+++|+|+++ +++++.+. .+.. .++| +++|+||+|+... ..+++++||++
T Consensus 77 aILVVDa~~G~~~qT~ehl~----il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~t 150 (581)
T TIGR00475 77 ALLVVDADEGVMTQTGEHLA----VLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKT 150 (581)
T ss_pred EEEEEECCCCCcHHHHHHHH----HHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCC
Confidence 999999987 45554442 2222 2677 9999999885210 24799999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy17231 141 GEGVEEMFADIGRQLIL 157 (189)
Q Consensus 141 ~~~i~~~~~~i~~~i~~ 157 (189)
|.|++++++++...+..
T Consensus 151 G~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 151 GQGIGELKKELKNLLES 167 (581)
T ss_pred CCCchhHHHHHHHHHHh
Confidence 99999999988766544
No 193
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.80 E-value=1.5e-18 Score=121.50 Aligned_cols=137 Identities=20% Similarity=0.164 Sum_probs=96.2
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------chHHHhcCCcE
Q psy17231 13 LCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------ITSSYYKFAEA 85 (189)
Q Consensus 13 i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~~ 85 (189)
++|++|+|||||++++.+...........+ ............. ...+.+||+||..++.. .....+..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGT-TTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCc-EECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCE
Confidence 589999999999999987655422211221 1122222333221 35789999999876543 33447789999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------CCceEEeeccCCCCHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~~~ 147 (189)
+++|+|.++........ +...... .+.|+++|+||+|.... ..+++++||+++.|++++
T Consensus 79 il~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 79 ILFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 99999999887665554 3434333 37999999999774321 238899999999999999
Q ss_pred HHHHHHH
Q psy17231 148 FADIGRQ 154 (189)
Q Consensus 148 ~~~i~~~ 154 (189)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998765
No 194
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.80 E-value=2.2e-18 Score=143.96 Aligned_cols=132 Identities=16% Similarity=0.203 Sum_probs=96.0
Q ss_pred cCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc------hHHHh--cCCcEE
Q psy17231 15 GEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI------TSSYY--KFAEAA 86 (189)
Q Consensus 15 G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~ 86 (189)
|++|||||||+|++.+..+.... .++...+.....+..++ ..+++|||||++++... ...++ +.+|++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n--~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvv 76 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGN--WPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLV 76 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecC--CCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEE
Confidence 89999999999999987764443 33333455555555555 35799999999877553 22332 378999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
++|+|.++.+. ...+..++.+. ++|+++|+||+|+.+. ..+++++||++|.|++++++++.
T Consensus 77 I~VvDat~ler---~l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 77 VNVVDASNLER---NLYLTLQLLEL--GIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EEEecCCcchh---hHHHHHHHHhc--CCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 99999987542 22333444433 7999999999986421 23789999999999999999998
Q ss_pred HHH
Q psy17231 153 RQL 155 (189)
Q Consensus 153 ~~i 155 (189)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 764
No 195
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.80 E-value=2.4e-19 Score=130.26 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=101.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------------CCcccceeeeeEEEEEEC--CeEEEEEEEeCCCcc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSS--------------SRKSTLGLDNFNKEYKVD--DRSIQMQLWDTGGME 70 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~g~~ 70 (189)
+..+|+++|+.++|||||+.+|....-.... ..+...+........... .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 5678999999999999999999744321110 000111122222222222 345688999999999
Q ss_pred ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------
Q psy17231 71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------- 129 (189)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------- 129 (189)
+|.......+..+|++++|+|+.+.-.- .....+..+... ++|+++|.||+|....
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ceeecccceecccccceeeeeccccccc-cccccccccccc--ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence 9888778889999999999999865322 233334344444 7999999999885310
Q ss_pred --CCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231 130 --ISSTYKTSCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 130 --~~~~~~~Sa~~~~~i~~~~~~i~~~i 155 (189)
..+++.+||++|.|++++++.+.+.+
T Consensus 159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 159 EEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 13699999999999999999988765
No 196
>KOG1707|consensus
Probab=99.80 E-value=2.3e-19 Score=144.35 Aligned_cols=156 Identities=19% Similarity=0.276 Sum_probs=122.2
Q ss_pred CCCCC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHH
Q psy17231 1 MASIK-VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSY 79 (189)
Q Consensus 1 m~~~~-~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 79 (189)
|+... ...+||+++|+.||||||||-++...+|+++.++.- +.........-..+...+.|++..++-.......
T Consensus 1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl----~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~E 76 (625)
T KOG1707|consen 1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL----PRILIPADVTPENVPTSIVDTSSDSDDRLCLRKE 76 (625)
T ss_pred CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccC----CccccCCccCcCcCceEEEecccccchhHHHHHH
Confidence 44444 567999999999999999999999999877653221 1112112222234557899998766656666788
Q ss_pred hcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhC---CCCcEEEEeeccccccc------------------CCceEEee
Q psy17231 80 YKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYA---ENAKIFLCGNNEQCHNL------------------ISSTYKTS 137 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~---~~~p~ivv~nK~d~~~~------------------~~~~~~~S 137 (189)
++.++++.++|+++++++++.+ .+|+..+++.. ..+|+|+||||.|.... ++.+++||
T Consensus 77 irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecS 156 (625)
T KOG1707|consen 77 IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECS 156 (625)
T ss_pred HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhh
Confidence 9999999999999999999999 79999999887 78999999999775422 23679999
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 138 CKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 138 a~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
|++..++.++|.+.+++++..-.
T Consensus 157 A~~~~n~~e~fYyaqKaVihPt~ 179 (625)
T KOG1707|consen 157 ALTLANVSELFYYAQKAVIHPTS 179 (625)
T ss_pred hhhhhhhHhhhhhhhheeeccCc
Confidence 99999999999999998776533
No 197
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=1.7e-18 Score=129.84 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=79.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--------CC------CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFI--------SS------SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI 75 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~--------~~------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 75 (189)
+|+++|..|+|||||+++|....-. .. .......+.........+.....++++|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999753210 00 000111122333333333344578999999999999888
Q ss_pred hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231 76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~ 127 (189)
....++.+|++++|+|+++.... ....++..+... ++|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECcccc
Confidence 88899999999999999876432 344555555444 79999999997754
No 198
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.79 E-value=7.8e-18 Score=143.93 Aligned_cols=141 Identities=19% Similarity=0.171 Sum_probs=101.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc----------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI---------- 75 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------- 75 (189)
++.++|+++|++|||||||+|++.+........ .|.+...+...+.....++.+||+||..++...
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~----pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i 76 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNW----AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQI 76 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCccCCC----CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHH
Confidence 356799999999999999999998776543332 233333333333344567899999998776431
Q ss_pred hHHH--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceEEeecc
Q psy17231 76 TSSY--YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTYKTSCK 139 (189)
Q Consensus 76 ~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~ 139 (189)
...+ ...+|++++|+|.++.+.. ..+..++.+. ++|++++.||+|..+ ...+++++||+
T Consensus 77 ~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~ 151 (772)
T PRK09554 77 ACHYILSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVST 151 (772)
T ss_pred HHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEee
Confidence 1122 2478999999999886542 2344555554 799999999988642 23489999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy17231 140 TGEGVEEMFADIGRQL 155 (189)
Q Consensus 140 ~~~~i~~~~~~i~~~i 155 (189)
+|+|++++.+.+.+..
T Consensus 152 ~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 152 RGRGIEALKLAIDRHQ 167 (772)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999887654
No 199
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.4e-17 Score=116.51 Aligned_cols=147 Identities=18% Similarity=0.264 Sum_probs=110.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCC--------C--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc
Q psy17231 3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISS--------S--SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV 72 (189)
Q Consensus 3 ~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~--------~--~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 72 (189)
.+++...||++.|+.++||||+++++........ . .+..|+.+++.... +.+ +..+.++|||||++|
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~--~~~-~~~v~LfgtPGq~RF 81 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE--LDE-DTGVHLFGTPGQERF 81 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE--EcC-cceEEEecCCCcHHH
Confidence 3457789999999999999999999987663111 1 11233333433332 333 357899999999999
Q ss_pred ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEee
Q psy17231 73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTS 137 (189)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~S 137 (189)
.-+|...++++.++|+++|.+.+..+ .....+.-+.... .+|++|++||+|+... ..+.++.+
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~ 159 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-PIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEID 159 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-CCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeee
Confidence 99999999999999999999999888 3333333333332 2999999999887654 23789999
Q ss_pred ccCCCCHHHHHHHHHHH
Q psy17231 138 CKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 138 a~~~~~i~~~~~~i~~~ 154 (189)
|..+++..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999988887765
No 200
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.78 E-value=2.7e-18 Score=139.17 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=94.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCC---------------------------CCCCCcccceeeeeEEEEEECCe
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFI---------------------------SSSSRKSTLGLDNFNKEYKVDDR 57 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~---------------------------~~~~~~~t~~~~~~~~~~~~~~~ 57 (189)
+.+.++|+++|.+++|||||+++|....-. +....+...|.+.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 567899999999999999999999733211 00000111233333333344444
Q ss_pred EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------
Q psy17231 58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------- 129 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------- 129 (189)
.+.+.+|||||+++|.......+..+|++++|+|++++..+.....+...+.......|+++++||.|+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence 578999999999887665455567899999999998732222222222222233223579999999987420
Q ss_pred ----------------CCceEEeeccCCCCHHHHH
Q psy17231 130 ----------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 130 ----------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
..+++.+||++|.|+++..
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 1268999999999998754
No 201
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.78 E-value=1.3e-17 Score=139.18 Aligned_cols=145 Identities=17% Similarity=0.258 Sum_probs=101.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--cccceeeeeEEEEE--ECCeE-----E-----EEEEEeCCCc
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSR--KSTLGLDNFNKEYK--VDDRS-----I-----QMQLWDTGGM 69 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~--~~t~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~g~ 69 (189)
+..++..|+++|.+++|||||+++|.+......... ..++|..+...... ..+.. . .+.+|||||+
T Consensus 2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 456778899999999999999999976544322211 12233222211100 00111 1 2689999999
Q ss_pred cccccchHHHhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc------------------
Q psy17231 70 ERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN------------------ 128 (189)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~------------------ 128 (189)
+.|..++...+..+|++++|+|+++ +++++.+.. +.. .++|+++++||+|+..
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~ 155 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS 155 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence 9999888888889999999999987 666655532 222 3799999999999731
Q ss_pred -----------------------------------cCCceEEeeccCCCCHHHHHHHHHHH
Q psy17231 129 -----------------------------------LISSTYKTSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 129 -----------------------------------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 154 (189)
...+++.+||++|.|++++++.+...
T Consensus 156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 01257999999999999999887543
No 202
>PRK10218 GTP-binding protein; Provisional
Probab=99.77 E-value=1.4e-17 Score=138.96 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=110.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh--CCCCCC----------CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY--DTFISS----------SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS 74 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~--~~~~~~----------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 74 (189)
..-+|+++|..++|||||+++|.. +.+... .+...+.+.++......+.+..+++++|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456899999999999999999986 333221 11233455666666666666678999999999999999
Q ss_pred chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------------------CC
Q psy17231 75 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------------IS 131 (189)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------------~~ 131 (189)
.+..+++.+|++++|+|+++.... +...++..+... ++|.|++.||+|..+. ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~~--gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFAY--GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHHc--CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 999999999999999999875322 333344444443 7999999999886422 13
Q ss_pred ceEEeeccCCC----------CHHHHHHHHHHHHHHh
Q psy17231 132 STYKTSCKTGE----------GVEEMFADIGRQLILS 158 (189)
Q Consensus 132 ~~~~~Sa~~~~----------~i~~~~~~i~~~i~~~ 158 (189)
+++.+||++|. ++..+++.++..+...
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 68999999998 5888888877776433
No 203
>KOG0074|consensus
Probab=99.77 E-value=6e-18 Score=113.32 Aligned_cols=145 Identities=18% Similarity=0.313 Sum_probs=116.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA 83 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 83 (189)
...+.+||+++|-.++|||||+..|...+.... .+|.|++. +.+..++ .+.+++||.+|+...+..|..++...
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hl---tpT~GFn~--k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenv 86 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHL---TPTNGFNT--KKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENV 86 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhc---cccCCcce--EEEeecC-cEEEEEEecCCccccchhhhhhhhcc
Confidence 346789999999999999999999987664322 55665554 3444444 47899999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCC
Q psy17231 84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEG 143 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~ 143 (189)
|++|+|+|.+|+..|+++...+.++.... ...|+.+.+||+|+.-.. ..+-+|||.+++|
T Consensus 87 d~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg 166 (185)
T KOG0074|consen 87 DGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEG 166 (185)
T ss_pred ceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccC
Confidence 99999999999999999988888877765 679999999997753221 1557789999999
Q ss_pred HHHHHHHHHHH
Q psy17231 144 VEEMFADIGRQ 154 (189)
Q Consensus 144 i~~~~~~i~~~ 154 (189)
+..-.+|++..
T Consensus 167 ~~dg~~wv~sn 177 (185)
T KOG0074|consen 167 STDGSDWVQSN 177 (185)
T ss_pred ccCcchhhhcC
Confidence 88888877643
No 204
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.77 E-value=7e-18 Score=136.76 Aligned_cols=145 Identities=14% Similarity=0.092 Sum_probs=96.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhC--CCCC-------------------------CCCCcccceeeeeEEEEEECC
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYD--TFIS-------------------------SSSRKSTLGLDNFNKEYKVDD 56 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~--~~~~-------------------------~~~~~~t~~~~~~~~~~~~~~ 56 (189)
.+.+.++|+++|..++|||||+.+|... .... ..+.+...|.........+..
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 3678899999999999999999999752 1110 000011112233333333444
Q ss_pred eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc------
Q psy17231 57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL------ 129 (189)
Q Consensus 57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~------ 129 (189)
....+.+||+||+++|.......+..+|++++|+|+++.+++.... .+...+.......|+|+|+||+|+.+.
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHH
Confidence 4578999999999888765556678899999999999875431111 111122222234689999999987420
Q ss_pred ------------------CCceEEeeccCCCCHHHHH
Q psy17231 130 ------------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 130 ------------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
..+++++||++|.|+++.+
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1368999999999998744
No 205
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=3.5e-18 Score=134.95 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc--c-------chHHH
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA--S-------ITSSY 79 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-------~~~~~ 79 (189)
..|+|+|-||||||||+|||.+.+.....+ .+.+..|..+....+.+. +|.++||+|.+... . .....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D-~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSD-TPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeec-CCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 679999999999999999999877543332 233333555556666654 58999999987433 1 23456
Q ss_pred hcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHHH
Q psy17231 80 YKFAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~~ 146 (189)
+..||+++||+|.... ..-+.+.+|+. . .++|+|+|.||+|.... ..+.+.+||..|.|+.+
T Consensus 81 i~eADvilfvVD~~~Git~~D~~ia~~Lr----~-~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~d 155 (444)
T COG1160 81 IEEADVILFVVDGREGITPADEEIAKILR----R-SKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGD 155 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHHH----h-cCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHH
Confidence 7789999999998653 12233344433 2 36999999999887522 23779999999999999
Q ss_pred HHHHHHHHHH
Q psy17231 147 MFADIGRQLI 156 (189)
Q Consensus 147 ~~~~i~~~i~ 156 (189)
+++++++.+.
T Consensus 156 Lld~v~~~l~ 165 (444)
T COG1160 156 LLDAVLELLP 165 (444)
T ss_pred HHHHHHhhcC
Confidence 9999999874
No 206
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.77 E-value=7e-18 Score=140.76 Aligned_cols=146 Identities=13% Similarity=0.152 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh--CCCCCC----------CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchH
Q psy17231 10 KVILCGEYGVGKSSLFRRYAY--DTFISS----------SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITS 77 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~--~~~~~~----------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 77 (189)
+|+|+|..++|||||+++|.. +.+... .+.+...|.++......+.+..+++++|||||+.+|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 799999999999999999975 222111 11122234444444444444457899999999999998889
Q ss_pred HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------------------CCceE
Q psy17231 78 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------------ISSTY 134 (189)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------------~~~~~ 134 (189)
..++.+|++++|+|+++.. ..+...|+..+... ++|+|+|+||+|+.+. ..+++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl 159 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIV 159 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEE
Confidence 9999999999999997632 34555666666654 7999999999886321 13689
Q ss_pred EeeccCCC----------CHHHHHHHHHHHHHHh
Q psy17231 135 KTSCKTGE----------GVEEMFADIGRQLILS 158 (189)
Q Consensus 135 ~~Sa~~~~----------~i~~~~~~i~~~i~~~ 158 (189)
++||++|. |++.+|+.+++.+...
T Consensus 160 ~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 160 YASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred echhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 99999996 7999999988877543
No 207
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.76 E-value=3e-17 Score=116.18 Aligned_cols=135 Identities=18% Similarity=0.242 Sum_probs=90.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc----------ccchHHH
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV----------ASITSSY 79 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~~~~ 79 (189)
.|+++|++|+|||||++++.+..+.... .++.+.+.....+..+. .+.+||+||.... ......+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~--~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~ 75 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLART--SKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEY 75 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeee--cCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHH
Confidence 3789999999999999999965554433 33333344333344333 7899999995332 2222333
Q ss_pred hc---CCcEEEEEEeCCChh--hHHHHHHHHHHHHHhCCCCcEEEEeeccccc-------------------ccCCceEE
Q psy17231 80 YK---FAEAAILVFSLDNAA--SFHVLSQHLLEIVTYAENAKIFLCGNNEQCH-------------------NLISSTYK 135 (189)
Q Consensus 80 ~~---~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~-------------------~~~~~~~~ 135 (189)
+. .++.+++++|.+... ....+..|+.. . +.|+++|+||+|.. ....++++
T Consensus 76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~---~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (170)
T cd01876 76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE---L--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIIL 150 (170)
T ss_pred HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH---c--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEE
Confidence 33 356788999987652 22333444432 2 58999999998852 11248899
Q ss_pred eeccCCCCHHHHHHHHHHH
Q psy17231 136 TSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 136 ~Sa~~~~~i~~~~~~i~~~ 154 (189)
+||+++.+++++++++.+.
T Consensus 151 ~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 151 FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EecCCCCCHHHHHHHHHHh
Confidence 9999999999999998764
No 208
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.75 E-value=7.4e-17 Score=127.85 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=105.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------hHH
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI--------TSS 78 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 78 (189)
..+|++|+|.||+|||||+|.|.+.+--..++...| ..+.....+.+++ +.+.+.||+|..+-... ...
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GT-TRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGT-TRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCC-ccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 468999999999999999999998764333322222 2355566667776 67899999998755442 255
Q ss_pred HhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------CCceEEeeccCCCCHHHH
Q psy17231 79 YYKFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------~~~~~~~Sa~~~~~i~~~ 147 (189)
.+..||.+++|+|.+.+.. .+....+ ....+.|+++|.||.|+... ..+++.+|+++|.|++.+
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~-----~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L 367 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIE-----LLPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDAL 367 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHH-----hcccCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCHHHH
Confidence 6789999999999988521 1111111 22257999999999998653 125799999999999999
Q ss_pred HHHHHHHHHHh
Q psy17231 148 FADIGRQLILS 158 (189)
Q Consensus 148 ~~~i~~~i~~~ 158 (189)
.+++.+.+...
T Consensus 368 ~~~i~~~~~~~ 378 (454)
T COG0486 368 REAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHhhc
Confidence 99988877655
No 209
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.75 E-value=1.9e-17 Score=133.30 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=98.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCcccceeeeeEE------------EEEE----CC------eEEE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFI---SSSSRKSTLGLDNFNK------------EYKV----DD------RSIQ 60 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~---~~~~~~~t~~~~~~~~------------~~~~----~~------~~~~ 60 (189)
+++++|+++|..++|||||+++|.+.... .+..+..|+...+... .+.. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 57899999999999999999999643211 1111111111111000 0001 01 1357
Q ss_pred EEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------
Q psy17231 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------- 129 (189)
Q Consensus 61 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------- 129 (189)
+.+||+||+++|...+......+|++++|+|+++.....+....+..+ ......|+++++||+|+...
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~ 160 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYEEIK 160 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHHHHH
Confidence 899999999999877777778899999999998642111222222222 22223679999999886321
Q ss_pred ---------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 130 ---------ISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 130 ---------~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
..+++++||++|.|++++++++...+.
T Consensus 161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 236899999999999999999987654
No 210
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.75 E-value=1.3e-17 Score=123.06 Aligned_cols=135 Identities=18% Similarity=0.148 Sum_probs=84.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC---------------------------CCCcccceeeeeEEEEEECCeEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISS---------------------------SSRKSTLGLDNFNKEYKVDDRSIQMQ 62 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~---------------------------~~~~~t~~~~~~~~~~~~~~~~~~~~ 62 (189)
+|+++|.+|+|||||+++|....-... ...+...+.........+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999964321110 00000011122222222222345789
Q ss_pred EEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------
Q psy17231 63 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------- 129 (189)
Q Consensus 63 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------- 129 (189)
+|||||+++|.......+..+|++++|+|+++...- ....... +.......++|+|+||.|+.+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~-~~~~~~~-~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~ 158 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLE-QTRRHSY-ILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYL 158 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccH-hHHHHHH-HHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence 999999988766556678899999999999875321 1111111 2222223567889999886421
Q ss_pred ---------CCceEEeeccCCCCHHH
Q psy17231 130 ---------ISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 130 ---------~~~~~~~Sa~~~~~i~~ 146 (189)
..+++.+||++|.|+++
T Consensus 159 ~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 159 AFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 12489999999999975
No 211
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.74 E-value=3.3e-17 Score=131.92 Aligned_cols=149 Identities=15% Similarity=0.152 Sum_probs=97.7
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCcccceeeeeEEE------------EEEC------C----e
Q psy17231 3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDT---FISSSSRKSTLGLDNFNKE------------YKVD------D----R 57 (189)
Q Consensus 3 ~~~~~~~~i~i~G~~g~GKTtli~~l~~~~---~~~~~~~~~t~~~~~~~~~------------~~~~------~----~ 57 (189)
..+.++++|+++|+.++|||||+.+|.+.. ...+..+..|+...+.... +... + .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 556789999999999999999999996431 1111111222221110000 1000 0 1
Q ss_pred EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----
Q psy17231 58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---- 129 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---- 129 (189)
...+.+||+||+++|..........+|++++|+|++++ ++.+.+. .+. .....|+++|+||+|+...
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~-~~~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALD-IIGIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHH-HcCCCcEEEEEEeeccccchhHH
Confidence 25789999999988866555555677999999999853 3333322 122 2223579999999886320
Q ss_pred ----------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 130 ----------------ISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 130 ----------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
..+++++||++|.|++++++++...+.
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 136899999999999999999887664
No 212
>COG1159 Era GTPase [General function prediction only]
Probab=99.74 E-value=5.8e-17 Score=121.88 Aligned_cols=148 Identities=18% Similarity=0.152 Sum_probs=103.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------ch
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--------IT 76 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~ 76 (189)
.++.-.|+|+|.||||||||+|++.+.+.........|+. ......+..+ ..++.++||||..+-.. ..
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR-~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhh-hheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 4556678999999999999999999988765555444432 2223333333 46889999999754333 22
Q ss_pred HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------CCceEEeeccC
Q psy17231 77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------ISSTYKTSCKT 140 (189)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~ 140 (189)
...+.++|+++||.|++....- .....+..+.. .+.|++++.||.|.... ....+.+||++
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~ 156 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGP-GDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALK 156 (298)
T ss_pred HHHhccCcEEEEEEeccccCCc-cHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccc
Confidence 4456789999999999875321 11222333333 36899999999773221 12779999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy17231 141 GEGVEEMFADIGRQLILS 158 (189)
Q Consensus 141 ~~~i~~~~~~i~~~i~~~ 158 (189)
|.|++.+.+.+...+.+.
T Consensus 157 g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 157 GDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred cCCHHHHHHHHHHhCCCC
Confidence 999999999988876544
No 213
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=4.4e-17 Score=120.60 Aligned_cols=115 Identities=15% Similarity=0.174 Sum_probs=79.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC---------------CCCcccceeeeeEE--EEEE---CCeEEEEEEEeCCCc
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISS---------------SSRKSTLGLDNFNK--EYKV---DDRSIQMQLWDTGGM 69 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~---------------~~~~~t~~~~~~~~--~~~~---~~~~~~~~i~D~~g~ 69 (189)
+|+++|+.|+|||||+++|........ .......+..+... .+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986543221 00011112222222 1211 345688999999999
Q ss_pred cccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127 (189)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~ 127 (189)
.+|.......+..+|++++|+|+++..++. ...++...... +.|+++|+||.|..
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAILE--GLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHc--CCCEEEEEECcccC
Confidence 999888888899999999999998766543 23444444333 69999999999963
No 214
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.72 E-value=2.5e-16 Score=114.79 Aligned_cols=136 Identities=15% Similarity=0.083 Sum_probs=90.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC------------CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTF------------ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS 74 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 74 (189)
++++|.++|..++|||||+++|..... .+....+...|.........+......+.++||||+.+|..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 468999999999999999999975310 00111111223333333344444456789999999988877
Q ss_pred chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc-----------------------C
Q psy17231 75 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL-----------------------I 130 (189)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~-----------------------~ 130 (189)
.....+..+|++++|+|++..-. .+....+..+... ++| +|++.||.|+... .
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 67777889999999999876421 1222333333333 566 7899999885210 1
Q ss_pred CceEEeeccCCCCHH
Q psy17231 131 SSTYKTSCKTGEGVE 145 (189)
Q Consensus 131 ~~~~~~Sa~~~~~i~ 145 (189)
.+++.+||++|.|+.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 268999999999863
No 215
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.72 E-value=4.3e-17 Score=116.24 Aligned_cols=142 Identities=20% Similarity=0.341 Sum_probs=91.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE-CCeEEEEEEEeCCCccccccchHH---HhcCC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV-DDRSIQMQLWDTGGMERVASITSS---YYKFA 83 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~ 83 (189)
.-.|+++|+.|+|||+|+.+|..+....+.... . .. ..+.. ......+.++|+||+.+.+..... ....+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e-~n--~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~ 76 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---E-NN--IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNA 76 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S---S-EE--EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---c-CC--ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhC
Confidence 457899999999999999999998654332111 0 11 11111 122346899999999988764433 47789
Q ss_pred cEEEEEEeCC-ChhhHHHHHHHHHHHHHhC----CCCcEEEEeecccccccCCceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231 84 EAAILVFSLD-NAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 84 ~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
.++|||+|.+ .+..+..+..++..+.... ..+|+++++||+|+.. |+.-.-|.+.++.-+..+...
T Consensus 77 k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~---------A~~~~~Ik~~LE~Ei~~lr~t 147 (181)
T PF09439_consen 77 KGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT---------AKPPKKIKKLLEKEIDKLRKT 147 (181)
T ss_dssp EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT------------HHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc---------cCCHHHHHHHHHHHHHHHHHH
Confidence 9999999987 4556777777776666543 6799999999999965 455556777788777777777
Q ss_pred hhhhhh
Q psy17231 159 NRSRLE 164 (189)
Q Consensus 159 ~~~~~~ 164 (189)
+.....
T Consensus 148 r~~~l~ 153 (181)
T PF09439_consen 148 RSKSLE 153 (181)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 665443
No 216
>KOG1423|consensus
Probab=99.72 E-value=1.5e-16 Score=119.57 Aligned_cols=146 Identities=17% Similarity=0.151 Sum_probs=101.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-----------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS----------- 74 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------- 74 (189)
.+...|+++|+||+|||||.|.+.+.+..+......|. .....--+.....++.++||||...-..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TT---r~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTT---RHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccce---eeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 44689999999999999999999998887766555553 2222222333457899999999642211
Q ss_pred -chHHHhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc-----------------------
Q psy17231 75 -ITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL----------------------- 129 (189)
Q Consensus 75 -~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------- 129 (189)
........||++++|+|+++... .+ ...+..+..+ ..+|-|+|.||.|+..-
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~--~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRT--PLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcC--ccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 12445668999999999997332 22 2333344444 47999999999442100
Q ss_pred ---------------------CCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231 130 ---------------------ISSTYKTSCKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 130 ---------------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 157 (189)
...+|.+||++|+||+++-+++..+...
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 1257999999999999999999876543
No 217
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.72 E-value=4.2e-17 Score=121.17 Aligned_cols=135 Identities=15% Similarity=0.128 Sum_probs=86.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC---------------------------CCCCCCCcccceeeeeEEEEEECCeEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDT---------------------------FISSSSRKSTLGLDNFNKEYKVDDRSIQMQ 62 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~---------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 62 (189)
+|+++|..++|||||+.+|.... +.+....+...|.........+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999995321 111111111122333333333333456899
Q ss_pred EEeCCCccccccchHHHhcCCcEEEEEEeCCChhh---H---HHHHHHHHHHHHhCCCCcEEEEeeccccccc-------
Q psy17231 63 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAAS---F---HVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------- 129 (189)
Q Consensus 63 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------- 129 (189)
+||+||+.+|.......+..+|++++|+|+++... | .+....+... .....+|+++++||.|+...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCCCeEEEEEEccccccccccHHHH
Confidence 99999998777666666788999999999987421 1 1122222222 22234789999999987520
Q ss_pred -------------------CCceEEeeccCCCCHH
Q psy17231 130 -------------------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 130 -------------------~~~~~~~Sa~~~~~i~ 145 (189)
..+++.+||++|.|++
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1258999999999987
No 218
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.71 E-value=4.5e-16 Score=113.84 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=92.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCccccee---eeeEEEEEECCeEEEEEEEeCCCccccccchHHH-----
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGL---DNFNKEYKVDDRSIQMQLWDTGGMERVASITSSY----- 79 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----- 79 (189)
++||+++|++|+|||||+|.+.+....... ..+.+. ......+.... ...+.+||+||..+.......+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~--~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~ 77 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEG--AAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMK 77 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCC--ccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhC
Confidence 479999999999999999999986543221 111110 11111111111 2367999999976433222222
Q ss_pred hcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccc------------------------------
Q psy17231 80 YKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHN------------------------------ 128 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~------------------------------ 128 (189)
+..+|++++|.+ + .|.+. ..|+..+... +.|+++|+||+|+..
T Consensus 78 ~~~~d~~l~v~~--~--~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 78 FSEYDFFIIISS--T--RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred ccCcCEEEEEeC--C--CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 556787777633 2 23344 3455555554 689999999988621
Q ss_pred ---cCCceEEeecc--CCCCHHHHHHHHHHHHHHhhhhh
Q psy17231 129 ---LISSTYKTSCK--TGEGVEEMFADIGRQLILSNRSR 162 (189)
Q Consensus 129 ---~~~~~~~~Sa~--~~~~i~~~~~~i~~~i~~~~~~~ 162 (189)
...++|.+|+. .+.++..+.+.+...+.+.+..+
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~ 190 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHV 190 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHH
Confidence 01378889998 67899999999988887665443
No 219
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.70 E-value=1.5e-16 Score=108.79 Aligned_cols=121 Identities=19% Similarity=0.187 Sum_probs=83.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----ccccchHHHhcCCcE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME----RVASITSSYYKFAEA 85 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~~~ 85 (189)
||+++|+.|+|||||+++|.+.... + ..|.. +.+. =.++||||.. .|..-.-....++|.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~--~KTq~-------i~~~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~ 66 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--Y--KKTQA-------IEYY-----DNTIDTPGEYIENPRFYHALIVTAQDADV 66 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--c--Cccce-------eEec-----ccEEECChhheeCHHHHHHHHHHHhhCCE
Confidence 8999999999999999999976542 2 11111 1111 1469999942 222233445568999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc--cc-------------CCceEEeeccCCCCHHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH--NL-------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~--~~-------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
+++|.|++++.+. +-..+.... ++|+|-|.||.|+. .. ....|++|+.+|+||+++.++
T Consensus 67 V~ll~dat~~~~~-----~pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 67 VLLLQDATEPRSV-----FPPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEEEecCCCCCcc-----CCchhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999999987532 111111222 58999999999877 11 236799999999999999988
Q ss_pred HH
Q psy17231 151 IG 152 (189)
Q Consensus 151 i~ 152 (189)
+-
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 63
No 220
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.70 E-value=2e-16 Score=120.60 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC-CCCC-----------C---CC---cccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT-FISS-----------S---SR---KSTLGLDNFNKEYKVDDRSIQMQLWDTGGME 70 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~-~~~~-----------~---~~---~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 70 (189)
-+|+++|.+|+|||||+++|.... .... . ++ ....+.........+....+++++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999997421 1000 0 00 0001223333334445556789999999999
Q ss_pred ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231 71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL 129 (189)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~ 129 (189)
+|.......++.+|++++|+|+++... .....++..... .++|+++++||+|+.+.
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh--cCCCEEEEEECCccCCC
Confidence 888767778889999999999987532 222334433333 37999999999987543
No 221
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.69 E-value=1.1e-15 Score=128.18 Aligned_cols=138 Identities=16% Similarity=0.155 Sum_probs=95.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC---CCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD---TFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~---~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
-|.++|..++|||||+++|.+. .+..+..+..|+ +.....+...+ ...+.+||+||+++|.......+..+|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI--~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTI--DLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceE--EeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 4789999999999999999853 233333333333 22222222222 23579999999999877666778899999
Q ss_pred EEEEeCCC---hhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc--------------------CCceEEeeccCCC
Q psy17231 87 ILVFSLDN---AASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL--------------------ISSTYKTSCKTGE 142 (189)
Q Consensus 87 i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~--------------------~~~~~~~Sa~~~~ 142 (189)
++|+|+++ +++.+.+. +.... ++| +|||+||+|+... ..+++++||++|.
T Consensus 79 lLVVda~eg~~~qT~ehl~-----il~~l-gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~ 152 (614)
T PRK10512 79 LLVVACDDGVMAQTREHLA-----ILQLT-GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR 152 (614)
T ss_pred EEEEECCCCCcHHHHHHHH-----HHHHc-CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence 99999986 33333332 22222 455 5799999886321 1378999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy17231 143 GVEEMFADIGRQLI 156 (189)
Q Consensus 143 ~i~~~~~~i~~~i~ 156 (189)
|++++++.+.....
T Consensus 153 gI~~L~~~L~~~~~ 166 (614)
T PRK10512 153 GIDALREHLLQLPE 166 (614)
T ss_pred CCHHHHHHHHHhhc
Confidence 99999999876543
No 222
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=2.6e-15 Score=118.86 Aligned_cols=146 Identities=22% Similarity=0.204 Sum_probs=103.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-----------c
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-----------I 75 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~ 75 (189)
.++||+|+|-||+|||||+|++.+.+-....+ .+.+..+.....+.++++ ++.++||+|..+-.. -
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~r 253 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-IAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVAR 253 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecC-CCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehh
Confidence 46999999999999999999999876433332 222223555556666664 679999999653221 1
Q ss_pred hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------CCceEE
Q psy17231 76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------ISSTYK 135 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------~~~~~~ 135 (189)
....+..++++++|.|++.+-+-+. ......+.+. +.++++|.||.|+... ..+.+.
T Consensus 254 t~~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~~--g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGISEQD-LRIAGLIEEA--GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCchHHH-HHHHHHHHHc--CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 2445678999999999988754222 2233333333 8999999999886432 237899
Q ss_pred eeccCCCCHHHHHHHHHHHHHHh
Q psy17231 136 TSCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 136 ~Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
+||++|.++.++|+.+.......
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHh
Confidence 99999999999999987765444
No 223
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.67 E-value=1.5e-15 Score=115.88 Aligned_cols=116 Identities=13% Similarity=0.066 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC--C------------CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTF--I------------SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI 75 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~--~------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 75 (189)
+|.++|.+|+|||||+++|....- . +..+.....+.........+.....++.+|||||+.+|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999963111 0 00000111122333322333233468899999999888888
Q ss_pred hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231 76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN 128 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~ 128 (189)
+...++.+|++++|+|+.+...- +....+..+... ++|++++.||.|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~~~--~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQADRY--NVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHHHc--CCCEEEEEECCCCCC
Confidence 88899999999999999764321 222333333333 799999999988643
No 224
>COG2262 HflX GTPases [General function prediction only]
Probab=99.67 E-value=5e-15 Score=115.73 Aligned_cols=151 Identities=21% Similarity=0.145 Sum_probs=113.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--ch------H
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--IT------S 77 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--~~------~ 77 (189)
..-..|.++|..|+|||||+|+|.+......+.-+.|+ +..+..+.+.+ ...+.+-||.|..+.-. +. -
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATL--dpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATL--DPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccc--cCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence 34578899999999999999999988777677667776 55566666654 34678999999764322 11 2
Q ss_pred HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccccC----------CceEEeeccCCCCHHH
Q psy17231 78 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLI----------SSTYKTSCKTGEGVEE 146 (189)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~----------~~~~~~Sa~~~~~i~~ 146 (189)
.....+|.+++|+|++++...+.+..-..-+.... ..+|+|+|.||.|+.... ...+.+||++|.|+++
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~~ 346 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEGLDL 346 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcCCCeEEEEeccCcCHHH
Confidence 23447899999999999977777766665555543 579999999997743211 1479999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy17231 147 MFADIGRQLILSN 159 (189)
Q Consensus 147 ~~~~i~~~i~~~~ 159 (189)
+++.|...+....
T Consensus 347 L~~~i~~~l~~~~ 359 (411)
T COG2262 347 LRERIIELLSGLR 359 (411)
T ss_pred HHHHHHHHhhhcc
Confidence 9999998887543
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.67 E-value=1.4e-15 Score=113.20 Aligned_cols=140 Identities=21% Similarity=0.251 Sum_probs=90.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc--------------c-------cceeeeeEEEE-------------EEC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRK--------------S-------TLGLDNFNKEY-------------KVD 55 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~--------------~-------t~~~~~~~~~~-------------~~~ 55 (189)
||+++|+.++|||||+++|..+.+....... . .+|++...... ...
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999876654321100 0 01111110000 001
Q ss_pred CeEEEEEEEeCCCccccccchHHHh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----
Q psy17231 56 DRSIQMQLWDTGGMERVASITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---- 129 (189)
Q Consensus 56 ~~~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---- 129 (189)
.....+.++|+||+++|.......+ ..+|++++|+|++.... .....++..+... ++|+++|.||+|+.+.
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~ 157 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL--NIPVFVVVTKIDLAPANILQ 157 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCEEEEEECccccCHHHHH
Confidence 1134689999999988865433333 36899999999876432 2223344444443 7999999999774210
Q ss_pred ---------------------------------------CCceEEeeccCCCCHHHHHHHHH
Q psy17231 130 ---------------------------------------ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 130 ---------------------------------------~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
..++|.+||.+|.|++++.+.+.
T Consensus 158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 12889999999999999887753
No 226
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.66 E-value=5e-15 Score=99.25 Aligned_cols=106 Identities=21% Similarity=0.228 Sum_probs=68.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---------chHHH
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISS-SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---------ITSSY 79 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~ 79 (189)
+|+++|.+|+|||||+|+|.+...... ..+..|. ......+...+. .+.++||||...-.. .....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~--~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~ 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTR--DPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQ 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSS--SEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccccccee--eeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHH
Confidence 689999999999999999997643222 2222222 223344455554 457999999753211 12333
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeec
Q psy17231 80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN 123 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK 123 (189)
+..+|++++|+|.+++.. +.....+..+. .+.|+++|.||
T Consensus 77 ~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred HHHCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 478899999999877422 22333334443 38999999998
No 227
>PRK13351 elongation factor G; Reviewed
Probab=99.66 E-value=9.2e-16 Score=131.05 Aligned_cols=117 Identities=14% Similarity=0.117 Sum_probs=79.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC--------CCCC---CC---cccceeeeeEEEEEECCeEEEEEEEeCCCcccc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTF--------ISSS---SR---KSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV 72 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~--------~~~~---~~---~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 72 (189)
...+|+|+|..|+|||||+++|....- .... +. ....+................+++|||||+.+|
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 457999999999999999999975311 0000 00 000111222212222233578999999999999
Q ss_pred ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231 73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC 126 (189)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~ 126 (189)
.......++.+|++++|+|+++.........| ..+... ++|+++++||+|+
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~--~~p~iiviNK~D~ 137 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY--GIPRLIFINKMDR 137 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc--CCCEEEEEECCCC
Confidence 88888999999999999999887655544444 333333 7999999999663
No 228
>PRK12736 elongation factor Tu; Reviewed
Probab=99.66 E-value=2.7e-15 Score=120.45 Aligned_cols=148 Identities=12% Similarity=0.088 Sum_probs=97.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCC------------CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTF------------ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV 72 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 72 (189)
..++++|+++|..++|||||+++|.+... .+....+...|.........+......+.+||+||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 56789999999999999999999975211 111111112233444444445444567899999999888
Q ss_pred ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc----------------------
Q psy17231 73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL---------------------- 129 (189)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~---------------------- 129 (189)
.......+..+|++++|+|++.... .+....+..+... ++| +|++.||.|+...
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 165 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc
Confidence 7655666678999999999976321 1222233333333 677 6789999885310
Q ss_pred -CCceEEeeccCCC--------CHHHHHHHHHHHH
Q psy17231 130 -ISSTYKTSCKTGE--------GVEEMFADIGRQL 155 (189)
Q Consensus 130 -~~~~~~~Sa~~~~--------~i~~~~~~i~~~i 155 (189)
..+++.+||++|. +++++++.+.+.+
T Consensus 166 ~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 166 DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 1378999999983 4666666666554
No 229
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.66 E-value=2.5e-15 Score=111.41 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=78.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC------------CCCcccceeeeeE--EEEEEC--------CeEEEEEEEeCC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISS------------SSRKSTLGLDNFN--KEYKVD--------DRSIQMQLWDTG 67 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~------------~~~~~t~~~~~~~--~~~~~~--------~~~~~~~i~D~~ 67 (189)
+|+++|..++|||||+.+|....-... ...+..-|..... ....+. +..+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999974321100 0000011111111 122222 346889999999
Q ss_pred CccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127 (189)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~ 127 (189)
|+.+|.......++.+|++++|+|+++....+. ...+..... .++|+++|+||.|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECCCcc
Confidence 999999988999999999999999988654433 223333333 368999999999985
No 230
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.65 E-value=6.8e-15 Score=121.36 Aligned_cols=143 Identities=19% Similarity=0.189 Sum_probs=104.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------chHHH-
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------ITSSY- 79 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~- 79 (189)
+..++.++|+||||||||+|++.+......+.+..|+ +.....+...+ .++++.|.||...... +...+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTV--Ekkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~l 77 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTV--EKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFL 77 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeE--EEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHH
Confidence 4567999999999999999999998887777444443 55555555555 3589999999765543 22223
Q ss_pred h-cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceEEeeccCCCCH
Q psy17231 80 Y-KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTYKTSCKTGEGV 144 (189)
Q Consensus 80 ~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~~~~~i 144 (189)
. ...|+++-|.|++|.+.--.+ --++.+. ++|++++.|+.|..+ +..|++.+||++|.|+
T Consensus 78 l~~~~D~ivnVvDAtnLeRnLyl---tlQLlE~--g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 78 LEGKPDLIVNVVDATNLERNLYL---TLQLLEL--GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred hcCCCCEEEEEcccchHHHHHHH---HHHHHHc--CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCH
Confidence 2 356999999999998743222 2234444 799999999977432 2459999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy17231 145 EEMFADIGRQLILS 158 (189)
Q Consensus 145 ~~~~~~i~~~i~~~ 158 (189)
+++.+.+.+....+
T Consensus 153 ~~l~~~i~~~~~~~ 166 (653)
T COG0370 153 EELKRAIIELAESK 166 (653)
T ss_pred HHHHHHHHHhcccc
Confidence 99999887654443
No 231
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.65 E-value=2.9e-15 Score=114.54 Aligned_cols=112 Identities=17% Similarity=0.142 Sum_probs=74.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCC----Ccc------------cceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSS----RKS------------TLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA 73 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~----~~~------------t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 73 (189)
+|+++|.+|+|||||+++|....-..... ... ..........+.+. ...+++|||||+.+|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence 58999999999999999997432110000 000 01111112233333 4678999999998887
Q ss_pred cchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231 74 SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC 126 (189)
Q Consensus 74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~ 126 (189)
......++.+|++++|+|+++.........| ..+... ++|.++++||.|.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~~--~~p~iivvNK~D~ 128 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADEA--GIPRIIFINKMDR 128 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHHc--CCCEEEEEECCcc
Confidence 7788889999999999999876544323323 233333 7999999999663
No 232
>PRK12735 elongation factor Tu; Reviewed
Probab=99.65 E-value=4.1e-15 Score=119.49 Aligned_cols=149 Identities=13% Similarity=0.081 Sum_probs=96.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhC-------C-----CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYD-------T-----FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER 71 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~-------~-----~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 71 (189)
.+.++++|+++|.+++|||||+++|... . ..+....+...|.+.......+......+.++||||+.+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 3577899999999999999999999852 1 111111111223343333344444456789999999988
Q ss_pred cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEE-EEeeccccccc---------------------
Q psy17231 72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNNEQCHNL--------------------- 129 (189)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~d~~~~--------------------- 129 (189)
|.......+..+|++++|+|+.+... .+....+..+... ++|.+ ++.||+|+...
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 76655566778999999999986421 1222333333332 67865 57999886311
Q ss_pred --CCceEEeeccCCC----------CHHHHHHHHHHHH
Q psy17231 130 --ISSTYKTSCKTGE----------GVEEMFADIGRQL 155 (189)
Q Consensus 130 --~~~~~~~Sa~~~~----------~i~~~~~~i~~~i 155 (189)
..+++.+||++|. ++.++++.+.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 1367999999985 5666666665543
No 233
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.64 E-value=4e-15 Score=120.86 Aligned_cols=141 Identities=15% Similarity=0.161 Sum_probs=96.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHhCCC---------------------------CCCCCCcccceeeeeEEEEEEC
Q psy17231 3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDTF---------------------------ISSSSRKSTLGLDNFNKEYKVD 55 (189)
Q Consensus 3 ~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~---------------------------~~~~~~~~t~~~~~~~~~~~~~ 55 (189)
+.+.++++|+++|..++|||||+.+|+...- .+..+.+..-|.........+.
T Consensus 2 ~~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~ 81 (447)
T PLN00043 2 GKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE 81 (447)
T ss_pred CCCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec
Confidence 3467889999999999999999999963110 0111111112334444444455
Q ss_pred CeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHH-------HHHHHHHHHHHhCCCC-cEEEEeeccccc
Q psy17231 56 DRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-------VLSQHLLEIVTYAENA-KIFLCGNNEQCH 127 (189)
Q Consensus 56 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~-p~ivv~nK~d~~ 127 (189)
.....++++|+||+++|.......+..+|++++|+|+++. .|+ +....+..+.. .++ ++|+++||+|+.
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT--LGVKQMICCCNKMDAT 158 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcccCC
Confidence 5567899999999999988888888999999999999873 232 33332222222 256 578899999954
Q ss_pred c---------------------c-----CCceEEeeccCCCCHHH
Q psy17231 128 N---------------------L-----ISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 128 ~---------------------~-----~~~~~~~Sa~~~~~i~~ 146 (189)
. . ..+|+++||++|.|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 0 13689999999999854
No 234
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.64 E-value=5e-15 Score=119.00 Aligned_cols=136 Identities=13% Similarity=0.054 Sum_probs=88.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCC------------CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDT------------FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER 71 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 71 (189)
.+.++++|+++|..++|||||+++|.... ..+....+...|.+.......+......+.+|||||+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 46778999999999999999999997321 111111111123333344444544456789999999998
Q ss_pred cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEE-EEeeccccccc---------------------
Q psy17231 72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNNEQCHNL--------------------- 129 (189)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~d~~~~--------------------- 129 (189)
|..........+|++++|+|++....- +....+..+... ++|.+ +++||+|+...
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 876555556788999999999863211 112222223332 57755 68999885310
Q ss_pred --CCceEEeeccCCC
Q psy17231 130 --ISSTYKTSCKTGE 142 (189)
Q Consensus 130 --~~~~~~~Sa~~~~ 142 (189)
..+++.+||++|.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 165 GDDTPIIRGSALKAL 179 (394)
T ss_pred ccCccEEECcccccc
Confidence 0478999999885
No 235
>KOG0077|consensus
Probab=99.64 E-value=7.5e-16 Score=105.96 Aligned_cols=141 Identities=16% Similarity=0.229 Sum_probs=110.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
+.=|++++|-.|+|||||++.|...+.... .||. ...+....+.+ .++..+|.+|+..-+..|..++..++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh---vPTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~i 91 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH---VPTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAI 91 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccccc---CCCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhcee
Confidence 456899999999999999999987775332 4443 22233344444 5789999999988888999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccCC------------------------------ceE
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLIS------------------------------STY 134 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~~------------------------------~~~ 134 (189)
++.+|+.|.+.|.+.+..+..+.... .+.|+++.+||.|..+... ..|
T Consensus 92 v~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 92 VYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred EeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 99999999999999998888877765 7899999999977554321 557
Q ss_pred EeeccCCCCHHHHHHHHHHH
Q psy17231 135 KTSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 135 ~~Sa~~~~~i~~~~~~i~~~ 154 (189)
.||...+.+..+.|.|+...
T Consensus 172 mcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEccCccceeeeehhhh
Confidence 78888887777777776543
No 236
>CHL00071 tufA elongation factor Tu
Probab=99.63 E-value=8.9e-15 Score=118.01 Aligned_cols=138 Identities=15% Similarity=0.073 Sum_probs=91.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCCCC------------CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFI------------SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER 71 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~------------~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 71 (189)
.+.+.++|+++|.+++|||||+++|....-. +....+...|.........+......+.+.|+||+.+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 4678899999999999999999999864110 1111111123333333333444446788999999988
Q ss_pred cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc---------------------
Q psy17231 72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL--------------------- 129 (189)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~--------------------- 129 (189)
|.......+..+|++++|+|+...-. .+....+..+... ++| +|++.||.|+...
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 87666677789999999999875421 2222333333333 678 7789999885320
Q ss_pred --CCceEEeeccCCCCH
Q psy17231 130 --ISSTYKTSCKTGEGV 144 (189)
Q Consensus 130 --~~~~~~~Sa~~~~~i 144 (189)
..+++.+||.+|.|+
T Consensus 165 ~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 165 GDDIPIVSGSALLALEA 181 (409)
T ss_pred CCcceEEEcchhhcccc
Confidence 137899999999754
No 237
>KOG1489|consensus
Probab=99.63 E-value=6.6e-15 Score=111.34 Aligned_cols=141 Identities=20% Similarity=0.209 Sum_probs=102.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------chHHHhcC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------ITSSYYKF 82 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~ 82 (189)
.+-++|-||+|||||++++...+-........|+ .....++.+++. ..+.+=|.||..+-.+ ..-..++.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL--~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTL--RPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeee--ccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHh
Confidence 5679999999999999999987654443333333 333335555543 3489999999765332 22445668
Q ss_pred CcEEEEEEeCCCh---hhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc------------CC-ceEEeeccCCCC
Q psy17231 83 AEAAILVFSLDNA---ASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL------------IS-STYKTSCKTGEG 143 (189)
Q Consensus 83 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~------------~~-~~~~~Sa~~~~~ 143 (189)
++..++|+|++.. +-+++++....++..+. .+.|.++|+||.|.... .. .++.+||+++++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEG 354 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccc
Confidence 8999999999988 77777776666666554 68999999999997322 11 389999999999
Q ss_pred HHHHHHHHHH
Q psy17231 144 VEEMFADIGR 153 (189)
Q Consensus 144 i~~~~~~i~~ 153 (189)
+.++.+.+-.
T Consensus 355 l~~ll~~lr~ 364 (366)
T KOG1489|consen 355 LEELLNGLRE 364 (366)
T ss_pred hHHHHHHHhh
Confidence 9999887643
No 238
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.63 E-value=4.2e-15 Score=113.85 Aligned_cols=118 Identities=14% Similarity=0.202 Sum_probs=75.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCC--------CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---c
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSS--------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---I 75 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~--------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~ 75 (189)
-.++|+++|.+|+|||||+|+|.+..+..... ..+|.........+..++....+.+|||||..+... .
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 36899999999999999999999887654421 344555555555666677778999999999643321 0
Q ss_pred -----------------------hHHHhc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231 76 -----------------------TSSYYK--FAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHN 128 (189)
Q Consensus 76 -----------------------~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~ 128 (189)
+...+. .+|+++++++.+.. .+... ...++.+. ..+|+|+|+||+|...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCC
Confidence 001222 34666666665542 12222 22233333 2699999999999743
No 239
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=9.7e-15 Score=104.43 Aligned_cols=141 Identities=17% Similarity=0.209 Sum_probs=96.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----------cccchH
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----------VASITS 77 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~ 77 (189)
..-|+++|-+|||||||||+|.+.+-.... ..|+|.+.....+.+++. +.+.|.||.-. +..+..
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArt--SktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLART--SKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeec--CCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 468999999999999999999986643222 556676777777777763 78999999532 222333
Q ss_pred HHhcC---CcEEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeecccccccC------------------Cc--e
Q psy17231 78 SYYKF---AEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNLI------------------SS--T 133 (189)
Q Consensus 78 ~~~~~---~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~~------------------~~--~ 133 (189)
.+++. ..++++++|+...-. ..+ ..+.-+.. .++|++|++||+|+-... .. +
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~ 174 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWV 174 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceE
Confidence 44433 457788888764422 221 22222233 389999999998854321 12 6
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHH
Q psy17231 134 YKTSCKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 134 ~~~Sa~~~~~i~~~~~~i~~~i~~ 157 (189)
+..|+.++.|++++...|.+.+..
T Consensus 175 ~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 175 VLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEEecccccCHHHHHHHHHHHhhc
Confidence 788999999999999988877643
No 240
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=4.2e-15 Score=110.62 Aligned_cols=151 Identities=18% Similarity=0.222 Sum_probs=106.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEE-EEECCeEEEEEEEeCCCccc-------cccch
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKE-YKVDDRSIQMQLWDTGGMER-------VASIT 76 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~-------~~~~~ 76 (189)
..++++++++|.+|+|||||||+|+.+...+...-.. +.+..... ..+++ -.+.+||+||..+ +....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~--~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~ 111 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGV--GTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLY 111 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeeccc--CCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHH
Confidence 4578999999999999999999999765543331111 11222221 12222 3679999999765 44456
Q ss_pred HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC--------------------------
Q psy17231 77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI-------------------------- 130 (189)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~-------------------------- 130 (189)
..++...|.++++.+..|+.-- --..+++++....-+.+++++.|.+|.....
T Consensus 112 ~d~l~~~DLvL~l~~~~draL~-~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~ 190 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRALG-TDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG 190 (296)
T ss_pred HHHhhhccEEEEeccCCCcccc-CCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 7778889989999998887521 2234555555555569999999998865431
Q ss_pred ------CceEEeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 131 ------SSTYKTSCKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 131 ------~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
.+++.+|.+.+.|++++..+++.++.....
T Consensus 191 ~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 191 RLFQEVKPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred HHHhhcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 277888999999999999999988765433
No 241
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.61 E-value=4.9e-15 Score=119.34 Aligned_cols=136 Identities=18% Similarity=0.132 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-----------------------------CCCCCcccceeeeeEEEEEECCeEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFI-----------------------------SSSSRKSTLGLDNFNKEYKVDDRSI 59 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~~~~ 59 (189)
++|+++|..++|||||+.+|+...-. +..+.+..-|.........+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999632210 0000011112223333333333446
Q ss_pred EEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------
Q psy17231 60 QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------- 129 (189)
Q Consensus 60 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------- 129 (189)
.+.+|||||+++|.......+..+|++++|+|+.....- +....+ .+.......++|++.||.|+...
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~-qt~~~~-~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~ 158 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLE-QTRRHS-YIASLLGIRHVVLAVNKMDLVDYDEEVFENIKK 158 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcc-ccHHHH-HHHHHcCCCcEEEEEEecccccchHHHHHHHHH
Confidence 889999999998876555677899999999998754211 111111 12222223568999999885310
Q ss_pred ------------CCceEEeeccCCCCHHH
Q psy17231 130 ------------ISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 130 ------------~~~~~~~Sa~~~~~i~~ 146 (189)
..+++.+||++|.|+++
T Consensus 159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 12589999999999986
No 242
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.61 E-value=2.3e-14 Score=106.48 Aligned_cols=145 Identities=19% Similarity=0.253 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-----chHHHhcCC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSS-RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-----ITSSYYKFA 83 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~ 83 (189)
||+++|++|+||||+.+.+..+..+.... -.+|. +.....+...+ ...+++||+||+..+.. .....++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~--~ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTI--DVEKSHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-------SEEEEEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcC--CceEEEEecCC-CcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 79999999999999999998665432221 12333 22233333333 35889999999976543 457789999
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeeccccc---------------------ccC---CceEEe
Q psy17231 84 EAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH---------------------NLI---SSTYKT 136 (189)
Q Consensus 84 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~---------------------~~~---~~~~~~ 136 (189)
.++|+|+|+.+. +.+..+...+..+.+..+++.+.|+..|.|+. +.. ..++.|
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T 157 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT 157 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence 999999999843 45566667777777778999999999997742 111 256777
Q ss_pred eccCCCCHHHHHHHHHHHHHHh
Q psy17231 137 SCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 137 Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
|--+ +.+-+.|..+++.+...
T Consensus 158 SI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 158 SIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp -TTS-THHHHHHHHHHHTTSTT
T ss_pred cCcC-cHHHHHHHHHHHHHccc
Confidence 7666 68888888877776643
No 243
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=5.1e-14 Score=107.20 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=105.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-----cccch-
Q psy17231 3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER-----VASIT- 76 (189)
Q Consensus 3 ~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-----~~~~~- 76 (189)
+.+.....|+|.|.||||||||++++.+.+......+..|. ..+..++..++ .+++++||||.-+ ...+.
T Consensus 163 ~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK--~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~ 238 (346)
T COG1084 163 AIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTK--GIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIER 238 (346)
T ss_pred CCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcccc--ceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHH
Confidence 44556788999999999999999999988876555444444 33333444333 5789999999532 22211
Q ss_pred H---HHhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEee
Q psy17231 77 S---SYYKFAEAAILVFSLDNAA--SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTS 137 (189)
Q Consensus 77 ~---~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~S 137 (189)
+ +.-.-.++++|++|.+... +.+.-...+.++..... .|+++|.||.|.... ......++
T Consensus 239 qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~ 317 (346)
T COG1084 239 QAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKIS 317 (346)
T ss_pred HHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhcccccccee
Confidence 1 2222458999999998654 45666777778888774 999999999886522 12456788
Q ss_pred ccCCCCHHHHHHHHHHHHHHh
Q psy17231 138 CKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 138 a~~~~~i~~~~~~i~~~i~~~ 158 (189)
+..+.+++.+.+.+.....+.
T Consensus 318 ~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 318 ATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred eeehhhHHHHHHHHHHHhhch
Confidence 889999988887777665443
No 244
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.60 E-value=8.9e-15 Score=119.72 Aligned_cols=141 Identities=16% Similarity=0.076 Sum_probs=89.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCcccceeeeeEEEEEEC
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISS-----------------------------SSRKSTLGLDNFNKEYKVD 55 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~ 55 (189)
..+.++|+++|..++|||||+.+|+...-... .+.+..-|.........+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46789999999999999999999964321000 0000011222233333333
Q ss_pred CeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------
Q psy17231 56 DRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------ 129 (189)
Q Consensus 56 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------ 129 (189)
.....+.+|||||+++|.......+..+|++++|+|++..-.- +... ...+.......|+|++.||.|+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~-qt~~-~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLD-QTRR-HSFIATLLGIKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccc-cchH-HHHHHHHhCCCceEEEEEeeccccchhHHHH
Confidence 3456789999999988865445556899999999998754211 1111 1111222123578999999885310
Q ss_pred -----------------CCceEEeeccCCCCHHHH
Q psy17231 130 -----------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 130 -----------------~~~~~~~Sa~~~~~i~~~ 147 (189)
..+++.+||++|.|++++
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 136899999999999864
No 245
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.60 E-value=4.6e-14 Score=109.78 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=55.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCc----ccceeeeeEEE---------------EEECC-eEEEEEEEeCCCc-
Q psy17231 11 VILCGEYGVGKSSLFRRYAYDTFISSSSRK----STLGLDNFNKE---------------YKVDD-RSIQMQLWDTGGM- 69 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~~~~~~~~~~----~t~~~~~~~~~---------------~~~~~-~~~~~~i~D~~g~- 69 (189)
|.++|.++||||||+|+|.+........+. +++|....... ...++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987754332222 33332222110 01122 3467999999998
Q ss_pred ---cccccchHH---HhcCCcEEEEEEeCC
Q psy17231 70 ---ERVASITSS---YYKFAEAAILVFSLD 93 (189)
Q Consensus 70 ---~~~~~~~~~---~~~~~~~~i~v~d~~ 93 (189)
+++..+... .++.+|++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 444444444 488999999999997
No 246
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.59 E-value=3.4e-14 Score=117.46 Aligned_cols=120 Identities=13% Similarity=0.095 Sum_probs=81.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh-CCCCCC-----------------CCCcccceeeeeEEEEEECCeEEEEEEEeCC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY-DTFISS-----------------SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~-~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 67 (189)
.+..+|+|+|.+++|||||+++|+. ...... .+.+...+..+......+....+.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 3467999999999999999999853 211100 0001112334444444455556889999999
Q ss_pred CccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN 128 (189)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~ 128 (189)
|+.+|.......+..+|++++|+|+++.- ......++..... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh--cCCCEEEEEECccccC
Confidence 99888876677888999999999998741 1223344443333 3799999999999753
No 247
>PLN03126 Elongation factor Tu; Provisional
Probab=99.59 E-value=3.5e-14 Score=116.03 Aligned_cols=138 Identities=14% Similarity=0.066 Sum_probs=91.5
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCC------C------CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDT------F------ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER 71 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~------~------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 71 (189)
.+++.++|+++|..++|||||+++|.... . .+....+...+.........+......+.++|+||+++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 35778999999999999999999998521 1 11111122233343333333333445789999999999
Q ss_pred cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc---------------------
Q psy17231 72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL--------------------- 129 (189)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~--------------------- 129 (189)
|.......+..+|++++|+|+.+... .+...++..+... ++| +|++.||.|+...
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 87766667778999999999886432 2223344333333 678 7789999885210
Q ss_pred --CCceEEeeccCCCCH
Q psy17231 130 --ISSTYKTSCKTGEGV 144 (189)
Q Consensus 130 --~~~~~~~Sa~~~~~i 144 (189)
..+++.+|+.+|.++
T Consensus 234 ~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 234 GDDIPIISGSALLALEA 250 (478)
T ss_pred cCcceEEEEEccccccc
Confidence 126888999988543
No 248
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.59 E-value=2.4e-14 Score=116.36 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=94.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCC--C-------------------------CCCCCCcccceeeeeEEEEEECC
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDT--F-------------------------ISSSSRKSTLGLDNFNKEYKVDD 56 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~--~-------------------------~~~~~~~~t~~~~~~~~~~~~~~ 56 (189)
.+.+.++|+++|..++|||||+.+|+... . .+....+...|.........+..
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 36788999999999999999999996411 1 01111111123333344444555
Q ss_pred eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhCCCCc-EEEEeeccccccc
Q psy17231 57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SF---HVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL 129 (189)
Q Consensus 57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~ 129 (189)
....+.++|+||+.+|.......+..+|++++|+|++... .| .+....+..+... ++| +|++.||.|....
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINKMDDKTV 160 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEccccccc
Confidence 5678999999999999877777788999999999988642 11 1222333233333 566 6799999993210
Q ss_pred --------------------------CCceEEeeccCCCCHHH
Q psy17231 130 --------------------------ISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 130 --------------------------~~~~~~~Sa~~~~~i~~ 146 (189)
..+++.+|+.+|.|+.+
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 13689999999999964
No 249
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.59 E-value=2.6e-14 Score=118.04 Aligned_cols=120 Identities=14% Similarity=0.119 Sum_probs=81.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC-CCCC-C----------------CCCcccceeeeeEEEEEECCeEEEEEEEeCCC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD-TFIS-S----------------SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~-~~~~-~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 68 (189)
+..+|+|+|.+++|||||+++|... .... . .+.....+..+......+....+.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 4569999999999999999999631 1100 0 00011112233333333444457899999999
Q ss_pred ccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL 129 (189)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~ 129 (189)
+.+|.......++.+|++++|+|+++.-. .....++..... .++|+++++||+|+.+.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL--RDTPIFTFINKLDRDGR 146 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh--cCCCEEEEEECCccccc
Confidence 99988877778899999999999987432 233344444333 37999999999997653
No 250
>PRK00049 elongation factor Tu; Reviewed
Probab=99.58 E-value=6.5e-14 Score=112.53 Aligned_cols=136 Identities=14% Similarity=0.057 Sum_probs=90.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCCC------------CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTF------------ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER 71 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 71 (189)
...+.++|+++|..++|||||+++|..... .+....+...|.+.......+......+.++||||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 457889999999999999999999986211 01111111223344444444444456789999999988
Q ss_pred cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEE-EEeeccccccc---------------------
Q psy17231 72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNNEQCHNL--------------------- 129 (189)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~d~~~~--------------------- 129 (189)
|.......+..+|++++|+|++.... .+....+..+... ++|.+ ++.||.|+...
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 77655666789999999999976422 2223333333333 68876 68999885310
Q ss_pred --CCceEEeeccCCC
Q psy17231 130 --ISSTYKTSCKTGE 142 (189)
Q Consensus 130 --~~~~~~~Sa~~~~ 142 (189)
..+++.+||++|.
T Consensus 165 ~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 165 GDDTPIIRGSALKAL 179 (396)
T ss_pred ccCCcEEEeeccccc
Confidence 1377999999875
No 251
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.6e-13 Score=110.49 Aligned_cols=143 Identities=18% Similarity=0.221 Sum_probs=105.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEE--EEEEC-CeEEEEEEEeCCCccccccchHHHhcC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNK--EYKVD-DRSIQMQLWDTGGMERVASITSSYYKF 82 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~ 82 (189)
.++.-++++|....|||||+-++-......... . |++..-. .+..+ ...-.+.++||||++.|..++..-..-
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~Ea--G--GITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~v 78 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEA--G--GITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASV 78 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccC--C--ceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCcc
Confidence 456678999999999999999997766543321 1 2344333 23332 122478999999999999988888888
Q ss_pred CcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC---------------------CceEEeec
Q psy17231 83 AEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI---------------------SSTYKTSC 138 (189)
Q Consensus 83 ~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~---------------------~~~~~~Sa 138 (189)
+|++++|+++++ +++.+.+. .++.. +.|++|+.||.|+.... ..++.+||
T Consensus 79 tDIaILVVa~dDGv~pQTiEAI~----hak~a--~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA 152 (509)
T COG0532 79 TDIAILVVAADDGVMPQTIEAIN----HAKAA--GVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSA 152 (509)
T ss_pred ccEEEEEEEccCCcchhHHHHHH----HHHHC--CCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeec
Confidence 999999999997 45555443 23333 89999999998876442 17799999
Q ss_pred cCCCCHHHHHHHHHHHHHHh
Q psy17231 139 KTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 139 ~~~~~i~~~~~~i~~~i~~~ 158 (189)
++|+|++++++.+.-.....
T Consensus 153 ~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 153 KTGEGIDELLELILLLAEVL 172 (509)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 99999999999877655443
No 252
>PLN03127 Elongation factor Tu; Provisional
Probab=99.56 E-value=1.4e-13 Score=111.81 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=94.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhC------C------CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYD------T------FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER 71 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~------~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 71 (189)
...++++|+++|..++|||||+++|.+. . ..+..+.+...|.+.......+.....++.++||||+.+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 3577899999999999999999999621 1 011111111223344444444544456789999999988
Q ss_pred cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc---------------------
Q psy17231 72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL--------------------- 129 (189)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~--------------------- 129 (189)
|..........+|++++|+|+++... .+....+..+... ++| +|++.||.|+...
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~ 213 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP 213 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 76655555667999999999875421 1222223233333 688 5788999885310
Q ss_pred --CCceEEeecc---CCCC-------HHHHHHHHHHHH
Q psy17231 130 --ISSTYKTSCK---TGEG-------VEEMFADIGRQL 155 (189)
Q Consensus 130 --~~~~~~~Sa~---~~~~-------i~~~~~~i~~~i 155 (189)
..+++.+|+. +|.| +.++++++.+.+
T Consensus 214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 1256777765 5555 667777766554
No 253
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.55 E-value=4e-13 Score=98.19 Aligned_cols=148 Identities=16% Similarity=0.064 Sum_probs=89.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc--------c---hH
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS--------I---TS 77 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~---~~ 77 (189)
.+|+++|.+|+|||||+|++.+..........+............+.+ ..+.++||||..+... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999876432221111111122233333444 4789999999765421 1 11
Q ss_pred HHhcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CCceEE
Q psy17231 78 SYYKFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------ISSTYK 135 (189)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~~~~~ 135 (189)
....++|++++|.++.+. +....+-.++..+.....-.++++|+|++|.... ...|+.
T Consensus 79 ~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred hcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 123578999999998762 1222333333333222123789999999774321 114444
Q ss_pred ee-----ccCCCCHHHHHHHHHHHHHHh
Q psy17231 136 TS-----CKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 136 ~S-----a~~~~~i~~~~~~i~~~i~~~ 158 (189)
.+ +..+.+++++++.+.+.+.+.
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 44 456778888888888777653
No 254
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.54 E-value=2.1e-13 Score=104.41 Aligned_cols=146 Identities=18% Similarity=0.085 Sum_probs=99.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc----c---hHHHhcCC
Q psy17231 11 VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS----I---TSSYYKFA 83 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~---~~~~~~~~ 83 (189)
|-++|-|++|||||++.+...+......+..|+ ......+...+ .-.|.+=|.||..+-.+ + .-..+..+
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL--~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTL--VPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccc--cCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 458999999999999999988766565555554 33333344322 23588999999765332 2 24456678
Q ss_pred cEEEEEEeCCChhh---HHHHHHHHHHHHHh---CCCCcEEEEeeccccccc---------------CCc-eEEeeccCC
Q psy17231 84 EAAILVFSLDNAAS---FHVLSQHLLEIVTY---AENAKIFLCGNNEQCHNL---------------ISS-TYKTSCKTG 141 (189)
Q Consensus 84 ~~~i~v~d~~~~~s---~~~~~~~~~~~~~~---~~~~p~ivv~nK~d~~~~---------------~~~-~~~~Sa~~~ 141 (189)
.++++|+|++..+. .+.......++..+ ..++|.+||+||+|.... ... .+.+||.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 99999999985432 34444444444444 368999999999883211 111 122999999
Q ss_pred CCHHHHHHHHHHHHHHhh
Q psy17231 142 EGVEEMFADIGRQLILSN 159 (189)
Q Consensus 142 ~~i~~~~~~i~~~i~~~~ 159 (189)
.|++++...+.+.+.+..
T Consensus 319 ~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 319 EGLDELLRALAELLEETK 336 (369)
T ss_pred cCHHHHHHHHHHHHHHhh
Confidence 999999999888887764
No 255
>KOG0462|consensus
Probab=99.54 E-value=7.7e-14 Score=112.19 Aligned_cols=147 Identities=20% Similarity=0.175 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-----------CCCC--CCcccceeeeeEEEE-EECCeEEEEEEEeCCCcccccc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTF-----------ISSS--SRKSTLGLDNFNKEY-KVDDRSIQMQLWDTGGMERVAS 74 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~-----------~~~~--~~~~t~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~ 74 (189)
-++.|+..-.-|||||.-+|+...- .+.. +++..+.+...+..+ ..+++.+.++++||||+.+|..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 4788999999999999999963221 1111 122222222222222 2235678999999999999999
Q ss_pred chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC----------------CceEEeec
Q psy17231 75 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI----------------SSTYKTSC 138 (189)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------~~~~~~Sa 138 (189)
.....+..++++++|+|++..-.-+.+..++..+.. +..+|.|.||.|++... .+++.+||
T Consensus 141 EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSA 217 (650)
T KOG0462|consen 141 EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSA 217 (650)
T ss_pred eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEe
Confidence 999999999999999998764333334444433332 79999999998876542 37899999
Q ss_pred cCCCCHHHHHHHHHHHHHHh
Q psy17231 139 KTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 139 ~~~~~i~~~~~~i~~~i~~~ 158 (189)
|+|.|++++++++++.+...
T Consensus 218 K~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 218 KTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred ccCccHHHHHHHHHhhCCCC
Confidence 99999999999999987544
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.54 E-value=6.1e-14 Score=118.83 Aligned_cols=139 Identities=17% Similarity=0.131 Sum_probs=87.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCC--------------CC---------------CcccceeeeeEEEEEECC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISS--------------SS---------------RKSTLGLDNFNKEYKVDD 56 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~--------------~~---------------~~~t~~~~~~~~~~~~~~ 56 (189)
.+.++|+++|.+++|||||+++|+...-... .. .+..-|.........+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 5678999999999999999999975321110 00 000012222222223333
Q ss_pred eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------
Q psy17231 57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------- 129 (189)
Q Consensus 57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------- 129 (189)
....+.++||||+++|.......+..+|++++|+|++....- +....+..+... ...|+||+.||+|+...
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~~ 179 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFDE 179 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh-CCCeEEEEEEecccccchhHHHHH
Confidence 345788999999988765555567899999999998754211 111111112222 23688999999886420
Q ss_pred ------------C---CceEEeeccCCCCHHH
Q psy17231 130 ------------I---SSTYKTSCKTGEGVEE 146 (189)
Q Consensus 130 ------------~---~~~~~~Sa~~~~~i~~ 146 (189)
. .+++.+||++|.|+++
T Consensus 180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 0 2489999999999984
No 257
>KOG1191|consensus
Probab=99.52 E-value=3.5e-13 Score=107.30 Aligned_cols=151 Identities=20% Similarity=0.209 Sum_probs=103.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---------chH
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---------ITS 77 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~ 77 (189)
..++|+|+|+||+|||||+|.|.+.+.....+ .+.+..|.....+.+++ +++.+.||+|..+-.. ...
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence 45899999999999999999999887644433 22222344455556665 6789999999766111 225
Q ss_pred HHhcCCcEEEEEEeC--CChhhHHHHHHHHHHHHHhC-------CCCcEEEEeecccccccC------------------
Q psy17231 78 SYYKFAEAAILVFSL--DNAASFHVLSQHLLEIVTYA-------ENAKIFLCGNNEQCHNLI------------------ 130 (189)
Q Consensus 78 ~~~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~~~~~-------~~~p~ivv~nK~d~~~~~------------------ 130 (189)
..+..+|++++|+|+ ++-++-..+...+....... ...|+|++.||.|+...+
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~ 423 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSV 423 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcc
Confidence 567789999999998 33333333333333332221 358999999997764331
Q ss_pred -CceEEeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 131 -SSTYKTSCKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 131 -~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
....++|++++++++.+...+.+.+.....
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 133559999999999999998887765543
No 258
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.52 E-value=5.2e-13 Score=101.53 Aligned_cols=146 Identities=22% Similarity=0.202 Sum_probs=100.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------chHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------ITSSYY 80 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~ 80 (189)
.-.++++|.|++|||||+++|.+.+.....-.+.|. ......+.++ ..++++.|+||..+-.+ ..-...
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl--~~VPG~l~Y~--ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTL--EPVPGMLEYK--GAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceec--ccccceEeec--CceEEEEcCcccccCcccCCCCcceeeeee
Confidence 458999999999999999999987765544334333 3333444444 47889999998654322 234567
Q ss_pred cCCcEEEEEEeCCChhh-HHHHHHHHHH----------------------------------------HHH---------
Q psy17231 81 KFAEAAILVFSLDNAAS-FHVLSQHLLE----------------------------------------IVT--------- 110 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~--------- 110 (189)
+.||.+++|.|+..... .+.+.+.+.. +.+
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 89999999999985543 3233222111 111
Q ss_pred -----------------hCCCCcEEEEeeccccccc--------CCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231 111 -----------------YAENAKIFLCGNNEQCHNL--------ISSTYKTSCKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 111 -----------------~~~~~p~ivv~nK~d~~~~--------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 157 (189)
....+|.++|.||.|+... ...++.+||..+.|++++.+.+.+.+.-
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKPNSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhccceEEEecccCCCHHHHHHHHHHhhCe
Confidence 0024888999999886542 1278999999999999999999887743
No 259
>KOG1145|consensus
Probab=99.52 E-value=3.9e-13 Score=108.23 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=105.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..++.-|.|+|...-|||||+-+|-....-..--..-|-.+-.+..+.+ ++ -.+.|.||||+..|..++..-.+.+|
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtD 226 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTD 226 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCcccc
Confidence 3456788899999999999999997666533221111222222333333 44 46799999999999998888888999
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeecccccccCC---------------------ceEEeeccC
Q psy17231 85 AAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLIS---------------------STYKTSCKT 140 (189)
Q Consensus 85 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~~---------------------~~~~~Sa~~ 140 (189)
++++|+.++|. ++.+.++ .... .+.|++|..||+|.++... +++.+||++
T Consensus 227 IvVLVVAadDGVmpQT~EaIk----hAk~--A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 227 IVVLVVAADDGVMPQTLEAIK----HAKS--ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred EEEEEEEccCCccHhHHHHHH----HHHh--cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 99999999874 5554443 2233 3899999999999775522 779999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy17231 141 GEGVEEMFADIGRQLI 156 (189)
Q Consensus 141 ~~~i~~~~~~i~~~i~ 156 (189)
|+|++.+-+.+.-...
T Consensus 301 g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 301 GENLDLLEEAILLLAE 316 (683)
T ss_pred CCChHHHHHHHHHHHH
Confidence 9999999988776554
No 260
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.51 E-value=3.6e-13 Score=115.16 Aligned_cols=117 Identities=9% Similarity=0.045 Sum_probs=79.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCC-----CCC-----------CcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFIS-----SSS-----------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME 70 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~-----~~~-----------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 70 (189)
+..+|.|+|.+++|||||+++|....-.. ... ....+..+.....+.+. ...+.+|||||+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~~ 86 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGHV 86 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCCc
Confidence 34589999999999999999996421100 000 00111122223334443 4688999999999
Q ss_pred ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231 71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN 128 (189)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~ 128 (189)
++.......++.+|++++|+|+++....... .++..+... ++|+++++||+|+..
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~--~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY--EVPRIAFVNKMDKTG 141 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 8887788889999999999999875443322 233333333 699999999999864
No 261
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.50 E-value=1.3e-12 Score=104.57 Aligned_cols=85 Identities=24% Similarity=0.319 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCccc----ceeeeeEEE---------E------EEC-CeEEEEEEEeCCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKST----LGLDNFNKE---------Y------KVD-DRSIQMQLWDTGG 68 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t----~~~~~~~~~---------~------~~~-~~~~~~~i~D~~g 68 (189)
++|.|+|.||||||||+|+|.+..+.....+..| .|....... . ..+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998776543322233 232211000 0 011 2236789999999
Q ss_pred cc----ccccchHHH---hcCCcEEEEEEeCC
Q psy17231 69 ME----RVASITSSY---YKFAEAAILVFSLD 93 (189)
Q Consensus 69 ~~----~~~~~~~~~---~~~~~~~i~v~d~~ 93 (189)
.. +...+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 53 333444455 88999999999996
No 262
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.50 E-value=9.8e-14 Score=118.94 Aligned_cols=121 Identities=16% Similarity=0.086 Sum_probs=81.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC---------------CCCC-CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD---------------TFIS-SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~---------------~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 69 (189)
....+|+++|..++|||||+++|... .+.. +..+..|+........+...+..+.+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 44579999999999999999999742 1110 0112223322222223335566789999999999
Q ss_pred cccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL 129 (189)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~ 129 (189)
.+|.......++.+|++++|+|+.+.-..+....| ..+.. .+.|.++++||.|....
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~--~~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK--ENVKPVLFINKVDRLIN 153 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH--cCCCEEEEEEChhcccc
Confidence 99888778889999999999998764222111112 22222 36888999999998653
No 263
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=3.8e-13 Score=106.78 Aligned_cols=148 Identities=22% Similarity=0.229 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-----------CCCCC--CcccceeeeeEE--EEEE-CCeEEEEEEEeCCCcccc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTF-----------ISSSS--RKSTLGLDNFNK--EYKV-DDRSIQMQLWDTGGMERV 72 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~-----------~~~~~--~~~t~~~~~~~~--~~~~-~~~~~~~~i~D~~g~~~~ 72 (189)
-+..|+..-.-|||||.-|+....- .+..+ ++..+....... .+.. +++.+.++++||||+.+|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 4677889999999999999953221 11111 112222222222 3333 447799999999999999
Q ss_pred ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC----------------CceEEe
Q psy17231 73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI----------------SSTYKT 136 (189)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------~~~~~~ 136 (189)
.-.....+..|.++++|+|++..-.-+.+...|..+.+ +..+|-|.||.|++..- ...+.+
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~ 166 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLV 166 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeE
Confidence 98888899999999999999865433455555555444 68999999998887552 266889
Q ss_pred eccCCCCHHHHHHHHHHHHHHhh
Q psy17231 137 SCKTGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 137 Sa~~~~~i~~~~~~i~~~i~~~~ 159 (189)
|||+|.||+++++.+++.+....
T Consensus 167 SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 167 SAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred ecccCCCHHHHHHHHHhhCCCCC
Confidence 99999999999999998885443
No 264
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.49 E-value=3.2e-12 Score=98.23 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=71.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchH---HHh-
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITS---SYY- 80 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---~~~- 80 (189)
+...++|+++|.+|+||||++|++.+.......... +.+........... ..++.+|||||..+...... ..+
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-SEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 456789999999999999999999977643222211 11112222222333 35789999999775432111 111
Q ss_pred -----cCCcEEEEEEeCCCh--hhH-HHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231 81 -----KFAEAAILVFSLDNA--ASF-HVLSQHLLEIVTYAENAKIFLCGNNEQCHN 128 (189)
Q Consensus 81 -----~~~~~~i~v~d~~~~--~s~-~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~ 128 (189)
...|++++|..++.. ... ..+-+.+..+....--.++||++|++|...
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 258899999666532 111 222233333322222367999999998653
No 265
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.48 E-value=1.2e-13 Score=93.19 Aligned_cols=106 Identities=23% Similarity=0.240 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc-ccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRK-STLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAI 87 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 87 (189)
+|++++|..|+|||+|+.++....+.... . +|.+ +........+.++.++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~--~~~t~~---------------------------~~~~~~~~~~s~~~~~ 51 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVP--TVFTIG---------------------------IDVYDPTSYESFDVVL 51 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccC--ceehhh---------------------------hhhccccccCCCCEEE
Confidence 58999999999999999999777664222 2 3332 2222234566788999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc-------CCceEEeeccCCCCHH
Q psy17231 88 LVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL-------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~-------~~~~~~~Sa~~~~~i~ 145 (189)
+||+.+++++++.+ |...+.... .+.|.++++||+|+... ...++++|+++|.|+.
T Consensus 52 ~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 52 QCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHHHHHHHhCCCcchhh
Confidence 99999999999766 777665543 57899999999987432 1257788999999884
No 266
>KOG3905|consensus
Probab=99.48 E-value=1.1e-12 Score=99.81 Aligned_cols=149 Identities=14% Similarity=0.108 Sum_probs=107.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC----
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA---- 83 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~---- 83 (189)
.-+|+++|+.|+|||||+.+|.+.+. ......+++.+....-...+...++.+|-..|...+..+....+...
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 56899999999999999999998762 22244443333222223334456789999888766655554444332
Q ss_pred cEEEEEEeCCChh-hHHHHHHHHHHHHHh---------------------------------------------------
Q psy17231 84 EAAILVFSLDNAA-SFHVLSQHLLEIVTY--------------------------------------------------- 111 (189)
Q Consensus 84 ~~~i~v~d~~~~~-s~~~~~~~~~~~~~~--------------------------------------------------- 111 (189)
-.+|++.|++++. -++++++|...+.++
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 3688899999994 567888888776650
Q ss_pred -----------CCCCcEEEEeecccccc--------------------------cCCceEEeeccCCCCHHHHHHHHHHH
Q psy17231 112 -----------AENAKIFLCGNNEQCHN--------------------------LISSTYKTSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 112 -----------~~~~p~ivv~nK~d~~~--------------------------~~~~~~~~Sa~~~~~i~~~~~~i~~~ 154 (189)
..++|++||.+|||+-. .....+++|+|...||+-++++|...
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 13599999999999621 12377999999999999999999998
Q ss_pred HHHhh
Q psy17231 155 LILSN 159 (189)
Q Consensus 155 i~~~~ 159 (189)
+....
T Consensus 289 ~yG~~ 293 (473)
T KOG3905|consen 289 SYGFP 293 (473)
T ss_pred hcCcc
Confidence 77654
No 267
>KOG1532|consensus
Probab=99.48 E-value=2.2e-13 Score=101.36 Aligned_cols=100 Identities=17% Similarity=0.156 Sum_probs=60.5
Q ss_pred EEEEEEEeCCCccc-cc-----cchHHHhcCCc--EEEEEEeC---CChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231 58 SIQMQLWDTGGMER-VA-----SITSSYYKFAE--AAILVFSL---DNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC 126 (189)
Q Consensus 58 ~~~~~i~D~~g~~~-~~-----~~~~~~~~~~~--~~i~v~d~---~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~ 126 (189)
...+.++|||||.+ |. .+....+.... ++++++|. +++.+|-.---+.-.+.-. ...|+|+++||+|.
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk-tklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK-TKLPFIVVFNKTDV 193 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh-ccCCeEEEEecccc
Confidence 35689999999865 21 12233333333 44455553 2444553222222222222 47999999999764
Q ss_pred cccC-----------------------------------------CceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231 127 HNLI-----------------------------------------SSTYKTSCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 127 ~~~~-----------------------------------------~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
.... -..+.|||.+|.|.+++|..+-..+.+.
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 3210 1568899999999999999987765544
No 268
>KOG0090|consensus
Probab=99.47 E-value=5.6e-13 Score=95.67 Aligned_cols=112 Identities=19% Similarity=0.324 Sum_probs=76.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhc---CC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYK---FA 83 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~ 83 (189)
..-.|+++|+.+||||+|+-+|..+.+..+. +++ ......+..+.. ...++|.||+++.+.-...++. .+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSi--epn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~a 109 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSI--EPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSA 109 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCee---eee--ccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccc
Confidence 3457999999999999999999988653332 121 333334444443 3689999999887664444444 78
Q ss_pred cEEEEEEeCC-ChhhHHHHHHHHHHHHHhC----CCCcEEEEeeccc
Q psy17231 84 EAAILVFSLD-NAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQ 125 (189)
Q Consensus 84 ~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d 125 (189)
-++|||+|.. .......+..++..+.... ..+|++++.||.|
T Consensus 110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqD 156 (238)
T KOG0090|consen 110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQD 156 (238)
T ss_pred eeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchh
Confidence 8999999964 3334455555555544433 5799999999955
No 269
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.47 E-value=9e-13 Score=107.17 Aligned_cols=151 Identities=15% Similarity=0.134 Sum_probs=97.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCcccc--eeeeeEE----------EE-EEC-------------
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTF---ISSSSRKSTL--GLDNFNK----------EY-KVD------------- 55 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~---~~~~~~~~t~--~~~~~~~----------~~-~~~------------- 55 (189)
..+.++|.++|.-..|||||+.+|.+... ..+..+.-|+ |+..... .+ ...
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 35678999999999999999999985322 2222222221 2211100 00 000
Q ss_pred ---CeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc----
Q psy17231 56 ---DRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN---- 128 (189)
Q Consensus 56 ---~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~---- 128 (189)
.....+.++|+||+++|.......+..+|++++|+|++....-.+....+. +.....-.|+|+|.||.|+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lgi~~iIVvlNKiDlv~~~~~ 189 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMKLKHIIILQNKIDLVKEAQA 189 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcCCCcEEEEEecccccCHHHH
Confidence 002368999999999887766666778999999999986311112222222 222222357899999988531
Q ss_pred ----------------cCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 129 ----------------LISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 129 ----------------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
...+++.+||++|.|++++++.|...+.
T Consensus 190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 1237899999999999999999886554
No 270
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.43 E-value=3.9e-12 Score=95.98 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=72.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---c-------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---I------- 75 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~------- 75 (189)
...++|+++|.+|+|||||+|++.+..........++. ..........++ ..+.+|||||..+... .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T-~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSET-LRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCce-EEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 45799999999999999999999987653332222221 122222233333 5789999999765521 1
Q ss_pred hHHHh--cCCcEEEEEEeCCChh-hHH--HHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231 76 TSSYY--KFAEAAILVFSLDNAA-SFH--VLSQHLLEIVTYAENAKIFLCGNNEQCHNL 129 (189)
Q Consensus 76 ~~~~~--~~~~~~i~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~ 129 (189)
...++ ...+++++|..++... ... .+-+++.......--.++++|.||+|...-
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 11122 2567888887666432 222 233333332221112679999999997643
No 271
>KOG1490|consensus
Probab=99.43 E-value=1.1e-12 Score=104.77 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=112.6
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-----ch
Q psy17231 2 ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-----IT 76 (189)
Q Consensus 2 ~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~ 76 (189)
.+.+.+.-.++++|-|+||||||+|.+...........++|. ..+..+ ++.+-..++++||||.-+... +.
T Consensus 162 PsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTk--sL~vGH--~dykYlrwQViDTPGILD~plEdrN~IE 237 (620)
T KOG1490|consen 162 PAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTK--LLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIE 237 (620)
T ss_pred CCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccc--hhhhhh--hhhheeeeeecCCccccCcchhhhhHHH
Confidence 355677789999999999999999999877765443223322 222222 233345789999999643221 11
Q ss_pred ----HHHhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhCCCCcEEEEeecccccccC------------------Cc
Q psy17231 77 ----SSYYKFAEAAILVFSLDNAA--SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI------------------SS 132 (189)
Q Consensus 77 ----~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~------------------~~ 132 (189)
.+...-..+++++.|++... |.++--+.++.+.....+.|+|+|.||+|..+.. .+
T Consensus 238 mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~ 317 (620)
T KOG1490|consen 238 MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVK 317 (620)
T ss_pred HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCce
Confidence 11112235788999998764 5566667788888887899999999998864331 27
Q ss_pred eEEeeccCCCCHHHHHHHHHHHHHHhhhhhhhh
Q psy17231 133 TYKTSCKTGEGVEEMFADIGRQLILSNRSRLEL 165 (189)
Q Consensus 133 ~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~~~ 165 (189)
++++|+.+.+|+.++....+..++..+.++...
T Consensus 318 v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klk 350 (620)
T KOG1490|consen 318 VVQTSCVQEEGVMDVRTTACEALLAARVEQKLK 350 (620)
T ss_pred EEEecccchhceeeHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999998888877654433
No 272
>PRK12739 elongation factor G; Reviewed
Probab=99.42 E-value=2.3e-12 Score=110.26 Aligned_cols=117 Identities=11% Similarity=0.087 Sum_probs=78.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC--C------CC------CCC--CcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDT--F------IS------SSS--RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME 70 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~--~------~~------~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 70 (189)
+..+|.|+|.+++|||||+++|.... . .. ..+ ....+..+....++.++ ..+++++||||+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~ 84 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGHV 84 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCHH
Confidence 45689999999999999999996421 0 00 000 01112223333344444 4678999999998
Q ss_pred ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231 71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN 128 (189)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~ 128 (189)
+|.......++.+|++++|+|+.+...-.. ...+..+... ++|+|++.||.|+.+
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~~--~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADKY--GVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHHc--CCCEEEEEECCCCCC
Confidence 888788888999999999999876532221 2233333333 799999999999864
No 273
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.41 E-value=4e-12 Score=111.30 Aligned_cols=128 Identities=18% Similarity=0.243 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECC----------------eEEEEEEEeCCCccccccchHHHhcC
Q psy17231 19 VGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD----------------RSIQMQLWDTGGMERVASITSSYYKF 82 (189)
Q Consensus 19 ~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~~~~~~~~~~~~~~ 82 (189)
++||||+.++-+......-...-|..+-.+ .+..+. ..-.+.+|||||++.|..+....+..
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~--~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~ 549 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGAT--EIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSL 549 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceE--EEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhccc
Confidence 569999999987665333211222111111 111110 01137999999999998877777888
Q ss_pred CcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------------------
Q psy17231 83 AEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------------------ 129 (189)
Q Consensus 83 ~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------------------ 129 (189)
+|++++|+|+++ +++++.+.. +... ++|+++|+||+|+...
T Consensus 550 aDivlLVVDa~~Gi~~qT~e~I~~----lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 550 ADLAVLVVDINEGFKPQTIEAINI----LRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred CCEEEEEEECcccCCHhHHHHHHH----HHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999986 555554432 2222 6899999999987420
Q ss_pred -----------------------CCceEEeeccCCCCHHHHHHHHHHH
Q psy17231 130 -----------------------ISSTYKTSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 130 -----------------------~~~~~~~Sa~~~~~i~~~~~~i~~~ 154 (189)
..+++.+||++|+|++++++++...
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 1166889999999999999877543
No 274
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=2.2e-12 Score=101.12 Aligned_cols=143 Identities=15% Similarity=0.175 Sum_probs=98.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCC--C-------------------------CCCCCCcccceeeeeEEEEEECC
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDT--F-------------------------ISSSSRKSTLGLDNFNKEYKVDD 56 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~--~-------------------------~~~~~~~~t~~~~~~~~~~~~~~ 56 (189)
...++++++++|+..+|||||+-+|+... + .+....+..-|.++......+..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 35789999999999999999999994211 1 11112222235566666666666
Q ss_pred eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh---hH--HHHHHHHHHHHHhCCCCcEEEEeeccccccc--
Q psy17231 57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SF--HVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-- 129 (189)
Q Consensus 57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-- 129 (189)
..+.+.++|+||+.+|-...-.-..+||++|+|+|+.+.+ +| ....+.+..+.+...-..+||+.||+|....
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 6778999999999888776666677899999999998764 22 1122333333333334667888999874321
Q ss_pred ----------------------CCceEEeeccCCCCHHH
Q psy17231 130 ----------------------ISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 130 ----------------------~~~~~~~Sa~~~~~i~~ 146 (189)
..+|+.+|+..|.|+.+
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 12789999999999875
No 275
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.39 E-value=1.7e-11 Score=99.67 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=105.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC--CeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD--DRSIQMQLWDTGGMERVASITSSYYKFA 83 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 83 (189)
.+.-.|+|+|..++|||||+.+|.+.+- +.++.+.++....+..+ +...++++|-..|...+..+....+...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~-----~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~ 97 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIED-----PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE 97 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCC-----CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence 4457999999999999999999976432 23444555544433322 2346789999988666665554444322
Q ss_pred ----cEEEEEEeCCChhhH-HHHHHHHHHHHH--------------------------------h---------------
Q psy17231 84 ----EAAILVFSLDNAASF-HVLSQHLLEIVT--------------------------------Y--------------- 111 (189)
Q Consensus 84 ----~~~i~v~d~~~~~s~-~~~~~~~~~~~~--------------------------------~--------------- 111 (189)
-.+++|.|.+.|..+ +++.+|+..++. .
T Consensus 98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~ 177 (472)
T PF05783_consen 98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS 177 (472)
T ss_pred cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence 478899999999755 556666654443 0
Q ss_pred ----------------CCCCcEEEEeecccccc--------------------------cCCceEEeeccCCCCHHHHHH
Q psy17231 112 ----------------AENAKIFLCGNNEQCHN--------------------------LISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 112 ----------------~~~~p~ivv~nK~d~~~--------------------------~~~~~~~~Sa~~~~~i~~~~~ 149 (189)
..++|++||++|+|... ....+|+||++...|++.++.
T Consensus 178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~ 257 (472)
T PF05783_consen 178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK 257 (472)
T ss_pred ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence 01489999999988432 123679999999999999999
Q ss_pred HHHHHHHHhhh
Q psy17231 150 DIGRQLILSNR 160 (189)
Q Consensus 150 ~i~~~i~~~~~ 160 (189)
+|...+.....
T Consensus 258 yi~h~l~~~~f 268 (472)
T PF05783_consen 258 YILHRLYGFPF 268 (472)
T ss_pred HHHHHhccCCC
Confidence 99998877654
No 276
>PRK00007 elongation factor G; Reviewed
Probab=99.39 E-value=7e-12 Score=107.31 Aligned_cols=117 Identities=9% Similarity=0.067 Sum_probs=77.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh--CCCCC------------CCC--CcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY--DTFIS------------SSS--RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME 70 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~--~~~~~------------~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 70 (189)
+..+|.|+|.+++|||||+++|.. +.... ..+ ....+..+.....+.+. ...++++||||+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~~ 86 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGHV 86 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCcH
Confidence 356999999999999999999963 11100 000 01112222223344444 4688999999998
Q ss_pred ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231 71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN 128 (189)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~ 128 (189)
+|.......+..+|++++|+|+...-.-+. ...+..+... ++|.|++.||.|+.+
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~--~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY--KVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc--CCCEEEEEECCCCCC
Confidence 887767778889999999999875432222 2223333333 789999999999763
No 277
>PRK09866 hypothetical protein; Provisional
Probab=99.36 E-value=3.2e-11 Score=99.93 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=65.0
Q ss_pred EEEEEEeCCCcccc--c---cchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----
Q psy17231 59 IQMQLWDTGGMERV--A---SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---- 129 (189)
Q Consensus 59 ~~~~i~D~~g~~~~--~---~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---- 129 (189)
..+.+.||||...- . ......+..+|++++|+|.+...+... ......+.......|+++|.||.|....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 35688999997542 1 123457889999999999987433222 1223333333223699999999886420
Q ss_pred ------------------CCceEEeeccCCCCHHHHHHHHHH
Q psy17231 130 ------------------ISSTYKTSCKTGEGVEEMFADIGR 153 (189)
Q Consensus 130 ------------------~~~~~~~Sa~~~~~i~~~~~~i~~ 153 (189)
...+|.+||+.|.|++++++.+.+
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 125899999999999999999877
No 278
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.33 E-value=1.1e-10 Score=86.33 Aligned_cols=149 Identities=19% Similarity=0.096 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------h---H
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI--------T---S 77 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~---~ 77 (189)
++|+++|.+|+||||++|.+++........................++ ..+.++||||..+.... . .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999877644432222222233344445566 46799999996433221 1 1
Q ss_pred HHhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------------CCceE
Q psy17231 78 SYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------------ISSTY 134 (189)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------~~~~~ 134 (189)
....+.|++++|+.+..-. .-...-.++..+....--..+|||+|.+|.... ...|+
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 1234689999999988321 112223344444332223578899998654322 12445
Q ss_pred Eeecc------CCCCHHHHHHHHHHHHHHhh
Q psy17231 135 KTSCK------TGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 135 ~~Sa~------~~~~i~~~~~~i~~~i~~~~ 159 (189)
..+.+ ....+.++++.+-+.+.+..
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 44444 23456666666666665554
No 279
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.32 E-value=6.9e-12 Score=109.25 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=79.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCC------------CCCCCcccceeeeeE--EEEEE--------------CC
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFI------------SSSSRKSTLGLDNFN--KEYKV--------------DD 56 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~------------~~~~~~~t~~~~~~~--~~~~~--------------~~ 56 (189)
..+..+|+|+|..++|||||+.+|....-. +....+...+..+.. ....+ .+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345679999999999999999999743311 000000001112221 11222 12
Q ss_pred eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231 57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127 (189)
Q Consensus 57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~ 127 (189)
..+.++++||||+.+|.......++.+|++++|+|+...-...... .+..+... ++|+|++.||.|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHHHC--CCCEEEEEECCccc
Confidence 3577899999999999888888889999999999988653322222 23333333 79999999999876
No 280
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.32 E-value=1.7e-11 Score=91.98 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=56.1
Q ss_pred EEEEEeCCCccccccchHHHh--------cCCcEEEEEEeCC---ChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231 60 QMQLWDTGGMERVASITSSYY--------KFAEAAILVFSLD---NAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCH 127 (189)
Q Consensus 60 ~~~i~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~---~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~ 127 (189)
.+.++|||||.++-..+.... ...-++++++|.. ++..|-.. -.-...+.+. +.|.+.|.||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~--~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL--ELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH--TSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC--CCCEEEeeeccCcc
Confidence 689999999988765544433 4556888888865 45544332 1222222333 79999999999875
Q ss_pred c--------------------------------------cCC-ceEEeeccCCCCHHHHHHHHHHHH
Q psy17231 128 N--------------------------------------LIS-STYKTSCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 128 ~--------------------------------------~~~-~~~~~Sa~~~~~i~~~~~~i~~~i 155 (189)
. ... .++.+|+.+++++++++..+.+++
T Consensus 170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 5 012 689999999999999999887765
No 281
>PRK13768 GTPase; Provisional
Probab=99.31 E-value=1.9e-11 Score=92.66 Aligned_cols=96 Identities=18% Similarity=0.092 Sum_probs=63.6
Q ss_pred EEEEEeCCCccccc---cchHHHhc---C--CcEEEEEEeCCChhhHHHH--HHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231 60 QMQLWDTGGMERVA---SITSSYYK---F--AEAAILVFSLDNAASFHVL--SQHLLEIVTYAENAKIFLCGNNEQCHNL 129 (189)
Q Consensus 60 ~~~i~D~~g~~~~~---~~~~~~~~---~--~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ivv~nK~d~~~~ 129 (189)
.+.+||+||+.+.. ..+..+.+ . ++++++|+|+......... ..|+........++|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 58999999986632 23322222 2 7899999999654322221 2333222222247999999999774210
Q ss_pred -------------------------------------------CCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231 130 -------------------------------------------ISSTYKTSCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 130 -------------------------------------------~~~~~~~Sa~~~~~i~~~~~~i~~~i 155 (189)
..+++++|++++.|++++++++.+.+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 12679999999999999999988766
No 282
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.30 E-value=1.6e-10 Score=90.32 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=55.9
Q ss_pred EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhC--CCCcEEEEeeccc
Q psy17231 58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQ 125 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d 125 (189)
.+.+.+||++|+...+..|..++.+++++++|+|+++- ..+.+....+..+.... .+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46789999999999999999999999999999999863 44555555555555443 6899999999988
Q ss_pred cc
Q psy17231 126 CH 127 (189)
Q Consensus 126 ~~ 127 (189)
..
T Consensus 240 ~f 241 (317)
T cd00066 240 LF 241 (317)
T ss_pred HH
Confidence 43
No 283
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.29 E-value=5e-12 Score=83.38 Aligned_cols=124 Identities=19% Similarity=0.211 Sum_probs=84.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----cccchHHHhcCCc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----VASITSSYYKFAE 84 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~~ 84 (189)
-||.++|..|+|||||.+++.+..... ..|-. +.+..+ -.+||||..- +.+-......+++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly----kKTQA-------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dad 66 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY----KKTQA-------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDAD 66 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh----cccce-------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccc
Confidence 379999999999999999998765421 11111 222211 3579999432 1122344567899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
++++|-.++++++. +-..+... -..|+|-|.+|.|+... ..++|++|+.++.|++++++.
T Consensus 67 vi~~v~~and~~s~-----f~p~f~~~-~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 67 VIIYVHAANDPESR-----FPPGFLDI-GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeeeeecccCcccc-----CCcccccc-cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 99999999998652 11111122 24679999999998732 238999999999999999988
Q ss_pred HHH
Q psy17231 151 IGR 153 (189)
Q Consensus 151 i~~ 153 (189)
+..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 753
No 284
>KOG0705|consensus
Probab=99.27 E-value=1.3e-11 Score=99.52 Aligned_cols=154 Identities=26% Similarity=0.478 Sum_probs=120.3
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcC
Q psy17231 3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKF 82 (189)
Q Consensus 3 ~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 82 (189)
+.+.+.+|+.|+|..++|||+|+.+++.+.|.....+. + ..+.+.+-.++++..+.+.|-+|..+ ..+...
T Consensus 25 srsipelk~givg~~~sgktalvhr~ltgty~~~e~~e---~-~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~w 95 (749)
T KOG0705|consen 25 SRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE---G-GRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQW 95 (749)
T ss_pred ecccchhheeeeecccCCceeeeeeeccceeccccCCc---C-ccceeeEEeeccceEeeeecccCCch-----hhhhhh
Confidence 44678899999999999999999999999886554222 2 44455555667777888888877432 467778
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeec--------------------ccccccCCceEEeeccC
Q psy17231 83 AEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNN--------------------EQCHNLISSTYKTSCKT 140 (189)
Q Consensus 83 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK--------------------~d~~~~~~~~~~~Sa~~ 140 (189)
+|++||||.+.+..+|+.+......+..+. ..+|+++++++ ++.++ +.||++++.+
T Consensus 96 vdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~kr--csy~et~aty 173 (749)
T KOG0705|consen 96 VDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKR--CSYYETCATY 173 (749)
T ss_pred ccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCc--cceeecchhh
Confidence 999999999999999999988887776554 67999999998 33333 4899999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhhhhh
Q psy17231 141 GEGVEEMFADIGRQLILSNRSRLELQT 167 (189)
Q Consensus 141 ~~~i~~~~~~i~~~i~~~~~~~~~~~~ 167 (189)
|-+++.+|+.++.++...++.+.....
T Consensus 174 Glnv~rvf~~~~~k~i~~~~~qq~~~~ 200 (749)
T KOG0705|consen 174 GLNVERVFQEVAQKIVQLRKYQQLPAS 200 (749)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhcccc
Confidence 999999999999988877655444333
No 285
>PTZ00416 elongation factor 2; Provisional
Probab=99.27 E-value=2.5e-11 Score=105.69 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=77.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCC------------CCCCCcccceeeeeE--EEEEEC--------CeEEEEEE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFI------------SSSSRKSTLGLDNFN--KEYKVD--------DRSIQMQL 63 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~------------~~~~~~~t~~~~~~~--~~~~~~--------~~~~~~~i 63 (189)
.+..+|+++|..++|||||+++|....-. +..+.+..-+..+.. ....+. +....+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 34459999999999999999999753210 000000001112211 122222 22567899
Q ss_pred EeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231 64 WDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127 (189)
Q Consensus 64 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~ 127 (189)
+||||+.+|.......++.+|++++|+|+.+.-.-.. ...+..+... ++|+|++.||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc--CCCEEEEEEChhhh
Confidence 9999999988877888999999999999886432222 2233333333 68999999999876
No 286
>PRK12740 elongation factor G; Reviewed
Probab=99.27 E-value=1.7e-11 Score=104.89 Aligned_cols=109 Identities=14% Similarity=0.162 Sum_probs=71.9
Q ss_pred EcCCCCCHHHHHHHHHhCCCC--------CCC------C--CcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchH
Q psy17231 14 CGEYGVGKSSLFRRYAYDTFI--------SSS------S--RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITS 77 (189)
Q Consensus 14 ~G~~g~GKTtli~~l~~~~~~--------~~~------~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 77 (189)
+|.+++|||||+++|....-. ... . ....+........+.+. .+.+++|||||+.+|...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence 699999999999999543210 000 0 01111112222233333 46899999999988877778
Q ss_pred HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231 78 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127 (189)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~ 127 (189)
..+..+|++++|+|++..........| ..+... ++|+++|+||+|..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~~--~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEKY--GVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHHc--CCCEEEEEECCCCC
Confidence 889999999999999876554433333 333333 79999999997743
No 287
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.26 E-value=1.1e-10 Score=85.34 Aligned_cols=85 Identities=18% Similarity=0.172 Sum_probs=56.9
Q ss_pred EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcE--EEEeecccccc--------
Q psy17231 59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI--FLCGNNEQCHN-------- 128 (189)
Q Consensus 59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~--ivv~nK~d~~~-------- 128 (189)
....++++.|..-.....+. -++.++.|+|+.+.+.... .+. +.+.. ++++||+|+.+
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~-------~qi~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGG-------PGITRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhH-------hHhhhccEEEEEhhhccccccccHHH
Confidence 35567788774322222221 2578999999987665321 111 13344 89999988753
Q ss_pred ---------cCCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231 129 ---------LISSTYKTSCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 129 ---------~~~~~~~~Sa~~~~~i~~~~~~i~~~i 155 (189)
...+++++||++|.|++++|+++.+.+
T Consensus 160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 124899999999999999999998664
No 288
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.25 E-value=8.1e-11 Score=101.40 Aligned_cols=120 Identities=13% Similarity=0.042 Sum_probs=77.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCC--C----------CCcccceeeeeEE----EEEECCeEEEEEEEeCCCcc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISS--S----------SRKSTLGLDNFNK----EYKVDDRSIQMQLWDTGGME 70 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~--~----------~~~~t~~~~~~~~----~~~~~~~~~~~~i~D~~g~~ 70 (189)
+.-+|+++|..++|||||+.+|....-... . +.+..-+..+... .+.+.+..+.++++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 445799999999999999999974321100 0 0000001111111 22234446789999999999
Q ss_pred ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231 71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL 129 (189)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~ 129 (189)
+|.......++.+|++++|+|+...-.-....-|. ..... +.|.|++.||.|....
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~--~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE--RVKPVLFINKVDRLIK 154 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc--CCCeEEEEECchhhcc
Confidence 99887788899999999999987643222222222 22333 5788999999998654
No 289
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.24 E-value=4.4e-10 Score=88.65 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=55.5
Q ss_pred EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhC--CCCcEEEEeecccc
Q psy17231 59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQC 126 (189)
Q Consensus 59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~ 126 (189)
..+.+||.+|+...+..|..++.+++++++|+|+++- ..+++....+..+.... .+.|+++++||.|.
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 5679999999999999999999999999999999862 34555555555655543 68999999999774
Q ss_pred c
Q psy17231 127 H 127 (189)
Q Consensus 127 ~ 127 (189)
.
T Consensus 264 ~ 264 (342)
T smart00275 264 F 264 (342)
T ss_pred H
Confidence 3
No 290
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.24 E-value=1.7e-10 Score=91.81 Aligned_cols=151 Identities=12% Similarity=0.153 Sum_probs=106.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCC------------CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDT------------FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA 73 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 73 (189)
++.-+|.|+....-|||||+..|+... ..+..+-+..-|+++..+...+.+..+++++.||||+.+|.
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 345689999999999999999996322 22233333334556666655555566899999999999999
Q ss_pred cchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------------------C
Q psy17231 74 SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------------I 130 (189)
Q Consensus 74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------------~ 130 (189)
......+.-.|++++++|+....- -+.+.-+...... +.+-|||.||.|.... -
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpM-PQTrFVlkKAl~~--gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALAL--GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCC-CchhhhHHHHHHc--CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 999999999999999999976321 1112222223333 7888999999665433 2
Q ss_pred CceEEeeccCC----------CCHHHHHHHHHHHHHHhh
Q psy17231 131 SSTYKTSCKTG----------EGVEEMFADIGRQLILSN 159 (189)
Q Consensus 131 ~~~~~~Sa~~~----------~~i~~~~~~i~~~i~~~~ 159 (189)
.++++.|++.| .++.-+|+.|++.+....
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 37888888765 357778998888876554
No 291
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.18 E-value=8.7e-11 Score=88.65 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=69.4
Q ss_pred cccccchHHHhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceE
Q psy17231 70 ERVASITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTY 134 (189)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~ 134 (189)
+++..+.+.+++++|.+++|||++++. +++.+.+|+..+.. .++|+++|+||+|+.. ...+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~ 101 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVL 101 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEE
Confidence 467777788999999999999999887 89999999987654 4899999999999742 123789
Q ss_pred EeeccCCCCHHHHHHHHHH
Q psy17231 135 KTSCKTGEGVEEMFADIGR 153 (189)
Q Consensus 135 ~~Sa~~~~~i~~~~~~i~~ 153 (189)
++||++|.|++++|+.+.+
T Consensus 102 ~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 102 MTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEecCCchhHHHHHhhhcC
Confidence 9999999999999998764
No 292
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1e-10 Score=99.00 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=84.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCC--------------CCCCCCCcccceeeeeEEEEEECCe-EEEEEEEeCCCcc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDT--------------FISSSSRKSTLGLDNFNKEYKVDDR-SIQMQLWDTGGME 70 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~g~~ 70 (189)
.+.-+|.|+|+..+|||||..+++... +.+....+..-|+++.......... .+.++++||||+.
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 345689999999999999999995211 1111111111244444443333333 5899999999999
Q ss_pred ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231 71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL 129 (189)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~ 129 (189)
+|.......++.+|++++|+|+...-..+.-.-|.+. ..+ ++|.+++.||.|....
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa-~~~--~vp~i~fiNKmDR~~a 143 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA-DKY--GVPRILFVNKMDRLGA 143 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHH-hhc--CCCeEEEEECcccccc
Confidence 9999999999999999999999765433333344433 333 7999999999886543
No 293
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.17 E-value=5.9e-10 Score=85.60 Aligned_cols=117 Identities=14% Similarity=0.185 Sum_probs=67.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---ch
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSS--------SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---IT 76 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~--------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~ 76 (189)
.++|+++|.+|+|||||+|.|.+....... ....+..+......+.-++....+.++||||..+... .|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999876654432 1122233333334455567788999999999532111 00
Q ss_pred ------------------------HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231 77 ------------------------SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127 (189)
Q Consensus 77 ------------------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~ 127 (189)
...-...|+++++.+.+... +..+. +..+.+.....++|-|..|+|..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~D--i~~mk~Ls~~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLD--IEFMKRLSKRVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHH--HHHHHHHTTTSEEEEEESTGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHH--HHHHHHhcccccEEeEEeccccc
Confidence 00111348899998876532 22221 22333344468999999998853
No 294
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.17 E-value=6.2e-10 Score=87.81 Aligned_cols=149 Identities=13% Similarity=0.128 Sum_probs=74.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHH-----H
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSS-SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSS-----Y 79 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~ 79 (189)
..+++|.|+|.+|+|||||||+|-+-...+.. .+...+..+.....|..... -.+.+||.||...-..-... -
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 34789999999999999999999653322111 11111111222333332221 14799999996432221122 2
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc--c------------------------------
Q psy17231 80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC--H------------------------------ 127 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~--~------------------------------ 127 (189)
+...|.+|++.+ +.|.....++....+.. ++|+.+|-+|.|. .
T Consensus 112 ~~~yD~fiii~s----~rf~~ndv~La~~i~~~-gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 112 FYRYDFFIIISS----ERFTENDVQLAKEIQRM-GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GGG-SEEEEEES----SS--HHHHHHHHHHHHT-T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred ccccCEEEEEeC----CCCchhhHHHHHHHHHc-CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 445687777665 23444444444333333 8999999999552 0
Q ss_pred cc-CCceEEeeccCC--CCHHHHHHHHHHHHHHhhh
Q psy17231 128 NL-ISSTYKTSCKTG--EGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 128 ~~-~~~~~~~Sa~~~--~~i~~~~~~i~~~i~~~~~ 160 (189)
+. ..++|.+|+.+- .+...+.+.+.+.+...+.
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 00 127899998755 4677777777776554433
No 295
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.16 E-value=8.1e-10 Score=86.39 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=60.8
Q ss_pred EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------
Q psy17231 58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------- 129 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------- 129 (189)
.+.+.++||+|..... ......+|.+++|.+....+....+. ..+.+ ..-++|.||+|+...
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIME----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhhh----hhheEEeehhcccchhHHHHHHH
Confidence 3678999999975322 22566799999997644444333322 22222 234899999995321
Q ss_pred ----------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 130 ----------------ISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 130 ----------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
..+++.+||+++.|++++++.+.+.+.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 147899999999999999999988644
No 296
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.15 E-value=9.2e-10 Score=85.56 Aligned_cols=89 Identities=13% Similarity=0.167 Sum_probs=59.4
Q ss_pred EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------
Q psy17231 58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------- 129 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------- 129 (189)
.+.+.|+||+|.... .......+|.++++-+.... +++......+. .+|.++|.||+|+...
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~----~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTG---DDLQGIKAGLM----EIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCcc---HHHHHHHHHHh----hhccEEEEEcccccchhHHHHHHH
Confidence 467899999985421 12356667777777443322 34333333332 5888999999886311
Q ss_pred ----------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 130 ----------------ISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 130 ----------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
..+++.+||+++.|++++++++.+.+.
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 025899999999999999999988643
No 297
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.2e-09 Score=86.52 Aligned_cols=114 Identities=16% Similarity=0.146 Sum_probs=78.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh-CCCCC-------CCCC----------cccceeeeeEEEEEECCeEEEEEEEeCCC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY-DTFIS-------SSSR----------KSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~-~~~~~-------~~~~----------~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 68 (189)
++-...|+-.|.+|||||..+|+- +.... .... +..-|+...+....++.....+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 345678999999999999999941 11100 0000 01124455555556666678899999999
Q ss_pred ccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeec
Q psy17231 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN 123 (189)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK 123 (189)
+++|..-....+..+|.++.|+|+...-- .+..+.....+. .++||+=..||
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVcrl--R~iPI~TFiNK 142 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVCRL--RDIPIFTFINK 142 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHHhh--cCCceEEEeec
Confidence 99999888888899999999999876421 122333333332 48999999999
No 298
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.10 E-value=7.6e-10 Score=78.66 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=43.7
Q ss_pred EEEEEeCCCccc----cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecc
Q psy17231 60 QMQLWDTGGMER----VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNE 124 (189)
Q Consensus 60 ~~~i~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 124 (189)
.+.|+|+||... .......++..+|++++|.+.+...+-.....+.+..... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 378999999743 2245677789999999999998865544555544444444 45588999983
No 299
>KOG0461|consensus
Probab=99.08 E-value=1.8e-09 Score=83.20 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=87.6
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCC-------CCCCCCcccceeeeeEEEEE-----ECCeEEEEEEEeCCC
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTF-------ISSSSRKSTLGLDNFNKEYK-----VDDRSIQMQLWDTGG 68 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~-------~~~~~~~~t~~~~~~~~~~~-----~~~~~~~~~i~D~~g 68 (189)
|+++. ..+++.++|...+|||||.+++..-.- +....+.-|++.-+...+.. ..++..++.++|+||
T Consensus 1 m~~~p-~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPG 79 (522)
T KOG0461|consen 1 MTSPP-SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPG 79 (522)
T ss_pred CCCCC-ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCC
Confidence 44433 349999999999999999999964321 12222222222222222111 134567889999999
Q ss_pred ccccccchHHHhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc------------------
Q psy17231 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL------------------ 129 (189)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------ 129 (189)
+.......-.-....|..++|+|+...-.-+... -.+-++. -...+||.||.|....
T Consensus 80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtL 155 (522)
T KOG0461|consen 80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTL 155 (522)
T ss_pred cHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhhHHHHHHHHHHHHH
Confidence 8654332223333458889999987532111111 1122222 2455667777442211
Q ss_pred -------CCceEEeeccCC----CCHHHHHHHHHHHHHHh
Q psy17231 130 -------ISSTYKTSCKTG----EGVEEMFADIGRQLILS 158 (189)
Q Consensus 130 -------~~~~~~~Sa~~~----~~i~~~~~~i~~~i~~~ 158 (189)
..|++++||..| +.|.++.+.+-.++.+.
T Consensus 156 e~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 156 ESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred HhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 238999999999 66666666665555444
No 300
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.07 E-value=2.9e-09 Score=79.48 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=66.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..++..|+++|++|+|||||++.+......... ....| . .++.. ....++.++|+||.. . ........+|
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~--~~~~g-~---i~i~~-~~~~~i~~vDtPg~~--~-~~l~~ak~aD 105 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNI--SDIKG-P---ITVVT-GKKRRLTFIECPNDI--N-AMIDIAKVAD 105 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcc--ccccc-c---EEEEe-cCCceEEEEeCCchH--H-HHHHHHHhcC
Confidence 355678999999999999999999864221111 11111 1 11111 134578999999853 2 2234467899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcE-EEEeecccc
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNNEQC 126 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~d~ 126 (189)
++++|+|++...... ....+..+... +.|. ++|.||.|+
T Consensus 106 vVllviDa~~~~~~~-~~~i~~~l~~~--g~p~vi~VvnK~D~ 145 (225)
T cd01882 106 LVLLLIDASFGFEME-TFEFLNILQVH--GFPRVMGVLTHLDL 145 (225)
T ss_pred EEEEEEecCcCCCHH-HHHHHHHHHHc--CCCeEEEEEecccc
Confidence 999999987543221 12233333333 5674 559999886
No 301
>KOG1144|consensus
Probab=99.06 E-value=1.6e-09 Score=90.47 Aligned_cols=149 Identities=16% Similarity=0.182 Sum_probs=99.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--cccceeeeeEEE------EEE--C----CeEEEEEEEeCCCcccc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSR--KSTLGLDNFNKE------YKV--D----DRSIQMQLWDTGGMERV 72 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~--~~t~~~~~~~~~------~~~--~----~~~~~~~i~D~~g~~~~ 72 (189)
+..-++|+|...+|||-|+-.+-+..+...... ..-+|-++.... ... . -..-.+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 345678999999999999999976544322111 111121221110 000 0 11124789999999999
Q ss_pred ccchHHHhcCCcEEEEEEeCC---ChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------
Q psy17231 73 ASITSSYYKFAEAAILVFSLD---NAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------------- 129 (189)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------- 129 (189)
..++.....-|+.+|+|+|+. .+++.+.+.- ++.. +.|+||..||.|....
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi~l----LR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL----LRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHHHHH----HHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 999999999999999999986 3556655532 2332 7999999999442111
Q ss_pred ---------------------------------CCceEEeeccCCCCHHHHHHHHHHHHHHhhhh
Q psy17231 130 ---------------------------------ISSTYKTSCKTGEGVEEMFADIGRQLILSNRS 161 (189)
Q Consensus 130 ---------------------------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~ 161 (189)
....+.+||.+|+||..++-+|++.-......
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~ 692 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE 692 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence 01557899999999999998888766555443
No 302
>KOG0410|consensus
Probab=99.05 E-value=1.7e-09 Score=82.66 Aligned_cols=149 Identities=14% Similarity=0.086 Sum_probs=100.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-ch-------HHH
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-IT-------SSY 79 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~-------~~~ 79 (189)
-.-|.++|..|+|||||+++|......+...-+.|+..+ ......... -.+.+.||-|.-.-.. .. -..
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT--~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPT--LHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccch--hhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 346889999999999999999966665565556665333 332333222 2567889999643211 11 122
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCc----EEEEeecccccccCC-----ceEEeeccCCCCHHHHHH
Q psy17231 80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAK----IFLCGNNEQCHNLIS-----STYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p----~ivv~nK~d~~~~~~-----~~~~~Sa~~~~~i~~~~~ 149 (189)
...+|.++.|.|++.|..-++...-+..+.... +..| +|=|-||.|...... ..+.+||++|.|++++.+
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~n~~v~isaltgdgl~el~~ 334 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEKNLDVGISALTGDGLEELLK 334 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccccCCccccccccCccHHHHHH
Confidence 347899999999999987777777776666653 2333 445778877654422 257799999999999998
Q ss_pred HHHHHHHHhh
Q psy17231 150 DIGRQLILSN 159 (189)
Q Consensus 150 ~i~~~i~~~~ 159 (189)
.+-.++....
T Consensus 335 a~~~kv~~~t 344 (410)
T KOG0410|consen 335 AEETKVASET 344 (410)
T ss_pred HHHHHhhhhh
Confidence 8777665543
No 303
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.05 E-value=2.6e-09 Score=78.76 Aligned_cols=138 Identities=12% Similarity=0.086 Sum_probs=76.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCC-CC-----CCCcccce---e-eeeEEEEEEC--------------------C
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFI-SS-----SSRKSTLG---L-DNFNKEYKVD--------------------D 56 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~-~~-----~~~~~t~~---~-~~~~~~~~~~--------------------~ 56 (189)
....|.++|+.|+|||||++++...... .. ........ . .......... .
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 4678889999999999999999643110 00 00000000 0 0000001110 0
Q ss_pred eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------
Q psy17231 57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------- 129 (189)
Q Consensus 57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------- 129 (189)
....+.++++.|.-... ..+....+..+.|+|+.+.+.. +... ... ...|.++++||.|+...
T Consensus 101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~-~~~----~~~a~iiv~NK~Dl~~~~~~~~~~ 170 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKY-PGM----FKEADLIVINKADLAEAVGFDVEK 170 (207)
T ss_pred CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhh-HhH----HhhCCEEEEEHHHccccchhhHHH
Confidence 12356677777721111 0111234555677777654321 1110 111 14788999999886421
Q ss_pred ----------CCceEEeeccCCCCHHHHHHHHHHH
Q psy17231 130 ----------ISSTYKTSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 130 ----------~~~~~~~Sa~~~~~i~~~~~~i~~~ 154 (189)
..+++++||++|.|++++++++.+.
T Consensus 171 ~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 171 MKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 1479999999999999999998764
No 304
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.05 E-value=1.8e-09 Score=83.38 Aligned_cols=140 Identities=19% Similarity=0.143 Sum_probs=90.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCC----------CC-------------------CCcccceeeeeEEEEEEC
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFIS----------SS-------------------SRKSTLGLDNFNKEYKVD 55 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~----------~~-------------------~~~~t~~~~~~~~~~~~~ 55 (189)
....++++-+|...=||||||-||+...-.. .. ..+..-|+++......+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 3567899999999999999999995322100 00 000111444444434444
Q ss_pred CeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC-----
Q psy17231 56 DRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI----- 130 (189)
Q Consensus 56 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----- 130 (189)
-.+.+|.+-||||+++|....-.-...||++|+++|+- ....+-.+-+..+.....-..+++..||.|+.+..
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHH
Confidence 45678999999999998765555556789999999973 22222222233333333347778888998865432
Q ss_pred -----------------CceEEeeccCCCCHHH
Q psy17231 131 -----------------SSTYKTSCKTGEGVEE 146 (189)
Q Consensus 131 -----------------~~~~~~Sa~~~~~i~~ 146 (189)
..++.+||..|.|+-.
T Consensus 161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 2778999999999864
No 305
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.01 E-value=7e-09 Score=86.60 Aligned_cols=117 Identities=19% Similarity=0.143 Sum_probs=71.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-cccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------ch---
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSR-KSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------IT--- 76 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~--- 76 (189)
.++|+++|.+|+||||++|++.+......... ..|. .........++ ..+.++||||..+... +.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT--r~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT--SVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce--EEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 47899999999999999999998764333221 2222 22122223333 5789999999765321 11
Q ss_pred HHHhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhC---CCCcEEEEeecccccc
Q psy17231 77 SSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHN 128 (189)
Q Consensus 77 ~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~ 128 (189)
..++. .+|++++|..++......+-..++..+.... --..+|||+|+.|..+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 11222 5799999988864332212223444444333 2377899999988664
No 306
>KOG0468|consensus
Probab=99.01 E-value=2.4e-09 Score=88.47 Aligned_cols=121 Identities=16% Similarity=0.151 Sum_probs=83.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-------------CCcccceeeeeEE--EEE---ECCeEEEEEE
Q psy17231 2 ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSS-------------SRKSTLGLDNFNK--EYK---VDDRSIQMQL 63 (189)
Q Consensus 2 ~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~-------------~~~~t~~~~~~~~--~~~---~~~~~~~~~i 63 (189)
++......++.++|.-+.|||+|...|.....+... ..+..-|..+... ++- .+++.+-+++
T Consensus 122 ~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ni 201 (971)
T KOG0468|consen 122 MDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNI 201 (971)
T ss_pred ccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeee
Confidence 344556678999999999999999999644332211 1111112222221 111 2456788999
Q ss_pred EeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccc
Q psy17231 64 WDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQ 125 (189)
Q Consensus 64 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d 125 (189)
.||||+.+|....-+.++.+|++++|+|+...-.+..- ..+....+. +.|+.+|+||.|
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq~--~~~i~vviNKiD 260 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQN--RLPIVVVINKVD 260 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHhc--cCcEEEEEehhH
Confidence 99999999999889999999999999999887665333 333333333 799999999955
No 307
>KOG1707|consensus
Probab=99.01 E-value=1.2e-08 Score=83.22 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=102.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+-+...++|+.++|||.|++.+.+..+...+ ..+....+....+...+....+.+-|.+-. ....+.... ..+|+
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~--~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNN--TGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhcccccccc--ccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 34578899999999999999999998776644 233322333333444455556677776543 222222222 78899
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC----------------CceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI----------------SSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------~~~~~~Sa~~~~~i~~~~~ 149 (189)
+.++||.+++.+|+-+...+..-... ...|+++|++|+|+.+.. .+-...|++.... .++|.
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~ 576 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFI 576 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHH
Confidence 99999999999998887666554444 589999999998875442 1335567775333 78899
Q ss_pred HHHHHHHHhh
Q psy17231 150 DIGRQLILSN 159 (189)
Q Consensus 150 ~i~~~i~~~~ 159 (189)
.|..+....+
T Consensus 577 kL~~~A~~Ph 586 (625)
T KOG1707|consen 577 KLATMAQYPH 586 (625)
T ss_pred HHHHhhhCCC
Confidence 9998887766
No 308
>PTZ00258 GTP-binding protein; Provisional
Probab=98.98 E-value=6.3e-09 Score=82.94 Aligned_cols=86 Identities=21% Similarity=0.176 Sum_probs=57.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCcc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGME 70 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~ 70 (189)
...++|.|+|.||||||||+|+|.+........+..|+ +.......+.+. ..++.++|+||..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi--~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTI--DPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcc--cceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 34679999999999999999999877654444334443 333333333221 2358999999965
Q ss_pred cccc----c---hHHHhcCCcEEEEEEeCC
Q psy17231 71 RVAS----I---TSSYYKFAEAAILVFSLD 93 (189)
Q Consensus 71 ~~~~----~---~~~~~~~~~~~i~v~d~~ 93 (189)
.-.+ + ....++.+|++++|+|+.
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 3221 1 233467899999999973
No 309
>KOG0458|consensus
Probab=98.96 E-value=9.8e-09 Score=83.78 Aligned_cols=142 Identities=16% Similarity=0.177 Sum_probs=97.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCC---------------------------CCCCCCCcccceeeeeEEEEEECCeE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDT---------------------------FISSSSRKSTLGLDNFNKEYKVDDRS 58 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~---------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~ 58 (189)
..++.++++|...+|||||..+++..- ..+++..+..-|+.....+..++-..
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 457899999999999999999994211 01222223334566666666666667
Q ss_pred EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh---hHHH--HHHHHHHHHHhCCCCcEEEEeeccccccc----
Q psy17231 59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SFHV--LSQHLLEIVTYAENAKIFLCGNNEQCHNL---- 129 (189)
Q Consensus 59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~--~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---- 129 (189)
..+.+.|.||+.+|....-.-...+|++++|+|++..+ +|+. -.+.+..+.+...-.-+||+.||.|.-.-
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~R 334 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDR 334 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHH
Confidence 78999999998888776666667889999999987432 3321 12444445554445677889999773211
Q ss_pred ---------------------CCceEEeeccCCCCHHHH
Q psy17231 130 ---------------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 130 ---------------------~~~~~~~Sa~~~~~i~~~ 147 (189)
...|+.||+.+|+|+-..
T Consensus 335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 127899999999998643
No 310
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.95 E-value=6.9e-09 Score=81.89 Aligned_cols=83 Identities=20% Similarity=0.162 Sum_probs=55.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCccccc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGMERVA 73 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~ 73 (189)
++|.++|.||||||||+|++.+........+..|+ +.....+.+.+. ...+.+.|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi--~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTI--EPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccc--cceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 68999999999999999999987754433334443 333323333221 1358999999975422
Q ss_pred c----c---hHHHhcCCcEEEEEEeCC
Q psy17231 74 S----I---TSSYYKFAEAAILVFSLD 93 (189)
Q Consensus 74 ~----~---~~~~~~~~~~~i~v~d~~ 93 (189)
+ + ....++.+|++++|+|+.
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 1 123467899999999974
No 311
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.93 E-value=8e-09 Score=78.88 Aligned_cols=81 Identities=21% Similarity=0.164 Sum_probs=53.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCcccccc-
Q psy17231 11 VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGMERVAS- 74 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~- 74 (189)
|.|+|.||||||||+|++.+........+..|+ +.......+.+. ...+.++|+||...-.+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi--~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTI--EPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccch--hceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 579999999999999999988765444344443 333333333221 23589999999653221
Q ss_pred ---ch---HHHhcCCcEEEEEEeCC
Q psy17231 75 ---IT---SSYYKFAEAAILVFSLD 93 (189)
Q Consensus 75 ---~~---~~~~~~~~~~i~v~d~~ 93 (189)
+. -..++.+|++++|+|+.
T Consensus 79 ~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 21 23356899999999873
No 312
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.5e-08 Score=80.36 Aligned_cols=141 Identities=18% Similarity=0.106 Sum_probs=98.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (189)
-|.-.|.---|||||++.+.+...... +.....|++.....+.++..+..+.++|.||++++-...-.-....|.+++|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l-~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRL-PEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccc-hhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 466778888999999999986543211 1122223344444444444445889999999999887777777789999999
Q ss_pred EeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------------CCceEEeeccCCCCHHHHHH
Q psy17231 90 FSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 90 ~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
++.++. ++-+-+ .+.........++|.||+|.... ..++|.+|+++|.||+++.+
T Consensus 81 V~~deGl~~qtgEhL-----~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 81 VAADEGLMAQTGEHL-----LILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EeCccCcchhhHHHH-----HHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 999643 333222 22333334556999999886531 12779999999999999999
Q ss_pred HHHHHHH
Q psy17231 150 DIGRQLI 156 (189)
Q Consensus 150 ~i~~~i~ 156 (189)
++.....
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9988874
No 313
>KOG3887|consensus
Probab=98.90 E-value=8e-09 Score=76.08 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEE--EEECCeEEEEEEEeCCCcccccc---chHHHhcCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKE--YKVDDRSIQMQLWDTGGMERVAS---ITSSYYKFA 83 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~ 83 (189)
.+|+++|...+||||+......+..+. .|+-.+...+. -++.+.-+.+.+||+||+-.+-. -....++++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn-----eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~ 102 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN-----ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGV 102 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC-----ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhcc
Confidence 459999999999999888777665432 23222222221 12233446789999999865432 457789999
Q ss_pred cEEEEEEeCCCh--hhHHHHHHHHHHHHHhCCCCcEEEEeeccccc--------------------------ccCCceEE
Q psy17231 84 EAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH--------------------------NLISSTYK 135 (189)
Q Consensus 84 ~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~--------------------------~~~~~~~~ 135 (189)
.+.++|.|+.+. +.+.++.....+.....+++-+=|...|.|-. +.. --|.
T Consensus 103 gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~-vsf~ 181 (347)
T KOG3887|consen 103 GALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQ-VSFY 181 (347)
T ss_pred CeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccce-EEEE
Confidence 999999998764 55555555555555555888888999994411 111 2255
Q ss_pred eeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 136 TSCKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 136 ~Sa~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
..+....+|-|.|..+++.+..+-.
T Consensus 182 LTSIyDHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 182 LTSIYDHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred EeeecchHHHHHHHHHHHHHhhhch
Confidence 5667789999999998888776644
No 314
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.88 E-value=7.8e-09 Score=73.88 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=41.9
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------------CCceEEeeccCCCCHHH
Q psy17231 84 EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------ISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------~~~~~~~Sa~~~~~i~~ 146 (189)
+.-|+|+|++..+-. -.+-...+ ..-=++|.||.|+... ..+++++|+++|.|+++
T Consensus 119 ~~~v~VidvteGe~~--P~K~gP~i-----~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~ 191 (202)
T COG0378 119 HLRVVVIDVTEGEDI--PRKGGPGI-----FKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDE 191 (202)
T ss_pred ceEEEEEECCCCCCC--cccCCCce-----eEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHH
Confidence 467778887755410 00000000 1244789999775433 23999999999999999
Q ss_pred HHHHHHHHH
Q psy17231 147 MFADIGRQL 155 (189)
Q Consensus 147 ~~~~i~~~i 155 (189)
+++|+....
T Consensus 192 ~~~~i~~~~ 200 (202)
T COG0378 192 WLRFIEPQA 200 (202)
T ss_pred HHHHHHhhc
Confidence 999986543
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.87 E-value=4.9e-08 Score=73.19 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTF 33 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~ 33 (189)
.....++++|+.|+||||+++.+.+..+
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~ 51 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDF 51 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCc
Confidence 3456899999999999999999997653
No 316
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.86 E-value=4.2e-08 Score=78.04 Aligned_cols=144 Identities=10% Similarity=0.107 Sum_probs=83.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCC----------------CCc---ccceeee---eEEEE-EECCeEEEEEEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSS----------------SRK---STLGLDN---FNKEY-KVDDRSIQMQLW 64 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~----------------~~~---~t~~~~~---~~~~~-~~~~~~~~~~i~ 64 (189)
.+.|.++|+.++|||||+|+|.+..+.+.. ... .|+.-.+ ....+ ..++.+..+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 678999999999999999999876221111 111 1111111 01111 123445788999
Q ss_pred eCCCcccccc-------c----------------------hHHHhc-CCcEEEEEE-eCC----ChhhH-HHHHHHHHHH
Q psy17231 65 DTGGMERVAS-------I----------------------TSSYYK-FAEAAILVF-SLD----NAASF-HVLSQHLLEI 108 (189)
Q Consensus 65 D~~g~~~~~~-------~----------------------~~~~~~-~~~~~i~v~-d~~----~~~s~-~~~~~~~~~~ 108 (189)
||+|...-.. - ....+. .++..++|. |.+ .++.+ +.-..++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 9999642111 0 133444 778888887 653 12223 3336777777
Q ss_pred HHhCCCCcEEEEeeccc-ccc------------cCCceEEeecc--CCCCHHHHHHHHHH
Q psy17231 109 VTYAENAKIFLCGNNEQ-CHN------------LISSTYKTSCK--TGEGVEEMFADIGR 153 (189)
Q Consensus 109 ~~~~~~~p~ivv~nK~d-~~~------------~~~~~~~~Sa~--~~~~i~~~~~~i~~ 153 (189)
... ++|++++.||+| ... ...+++.+|+. +...|..+++.++.
T Consensus 177 k~~--~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 177 KEL--NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred Hhc--CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence 776 899999999988 211 11254555553 44466665555443
No 317
>KOG3886|consensus
Probab=98.84 E-value=4.6e-09 Score=76.73 Aligned_cols=117 Identities=22% Similarity=0.315 Sum_probs=79.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC-CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-----chHHHhc
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDT-FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-----ITSSYYK 81 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~ 81 (189)
.-||+++|.+|+|||++-..+..+- ..+......|+ +..-....+-+. ..+++||.+|++.+.. .....++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~ti--dveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATI--DVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcc--eeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhhe
Confidence 4689999999999999876665322 11122223333 333333333332 4689999999985433 4456788
Q ss_pred CCcEEEEEEeCCChhhH---HHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231 82 FAEAAILVFSLDNAASF---HVLSQHLLEIVTYAENAKIFLCGNNEQCH 127 (189)
Q Consensus 82 ~~~~~i~v~d~~~~~s~---~~~~~~~~~~~~~~~~~p~ivv~nK~d~~ 127 (189)
..++.++|||+...+-- +..++-+..+.++.|...+++...|.|+.
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLV 129 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhc
Confidence 89999999999887543 33455556666666889999999997754
No 318
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.82 E-value=1.1e-08 Score=70.81 Aligned_cols=55 Identities=27% Similarity=0.276 Sum_probs=39.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 69 (189)
-+++++|.+|+|||||+|++.+....... ...+.+.....+..++ .+.+|||||.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVS---ATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeC---CCCCcccceEEEEeCC---CEEEEECCCc
Confidence 38999999999999999999987654322 2223344444455544 4689999996
No 319
>KOG2486|consensus
Probab=98.79 E-value=1.2e-08 Score=76.51 Aligned_cols=137 Identities=19% Similarity=0.107 Sum_probs=84.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----------ccccch
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME----------RVASIT 76 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~ 76 (189)
.+..++++|-+|+|||+|++.+...+...... .++.|.......+.... .+.+.|.||.- ++..+.
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~-k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTS-KSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhc-CCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHhH
Confidence 46899999999999999999998766433221 22444344444444443 56789999921 223333
Q ss_pred HHHhcCCc---EEEEEEeCCCh-h-hHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------------
Q psy17231 77 SSYYKFAE---AAILVFSLDNA-A-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------- 129 (189)
Q Consensus 77 ~~~~~~~~---~~i~v~d~~~~-~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------- 129 (189)
..++...+ .+++..|++-+ . .-.....|+ .+. +.|+-+|+||||....
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~---ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWL---GEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHH---hhc--CCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 44444333 35555565432 1 111112333 233 8999999999885321
Q ss_pred ----CCceEEeeccCCCCHHHHHHHHH
Q psy17231 130 ----ISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 130 ----~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
..+|+.+|+.++.|+++++-.+.
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehh
Confidence 12778899999999998876544
No 320
>KOG0082|consensus
Probab=98.77 E-value=3.6e-07 Score=71.57 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=71.1
Q ss_pred EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhh----------HHHHHHHHHHHHHhC--CCCcEEEEeecccc
Q psy17231 59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAAS----------FHVLSQHLLEIVTYA--ENAKIFLCGNNEQC 126 (189)
Q Consensus 59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~ 126 (189)
..+.++|.+||..-+.-|...+.++++++||.++++-+. ..+.......+.... .+.++|+..||.|+
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 578999999998878888899999999999999875322 122223333333332 68999999999664
Q ss_pred cccC---------------------------------------C-ceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231 127 HNLI---------------------------------------S-STYKTSCKTGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 127 ~~~~---------------------------------------~-~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 159 (189)
.... . =++.++|.+-.+|+.+|..+...+....
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 3210 0 1245678888888888888888777654
No 321
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.75 E-value=1.2e-08 Score=76.32 Aligned_cols=86 Identities=17% Similarity=0.292 Sum_probs=52.4
Q ss_pred EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------
Q psy17231 59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------- 129 (189)
Q Consensus 59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------- 129 (189)
+.+.+++|.|--.. .-....-+|.+++|....-.+..+.++.=+-+ +.=|+|.||+|....
T Consensus 122 ~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE-------iaDi~vVNKaD~~gA~~~~~~l~~ 191 (266)
T PF03308_consen 122 FDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDEIQAIKAGIME-------IADIFVVNKADRPGADRTVRDLRS 191 (266)
T ss_dssp -SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCCCCTB-TTHHH-------H-SEEEEE--SHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccHHHHHhhhhhh-------hccEEEEeCCChHHHHHHHHHHHH
Confidence 45677777662111 13556778888888886544433333322211 455788999774311
Q ss_pred ------------CCceEEeeccCCCCHHHHHHHHHHH
Q psy17231 130 ------------ISSTYKTSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 130 ------------~~~~~~~Sa~~~~~i~~~~~~i~~~ 154 (189)
..+++.|||.++.|++++++.+.+.
T Consensus 192 ~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 192 MLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 2388999999999999999998764
No 322
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.74 E-value=3.9e-08 Score=69.28 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=37.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 69 (189)
..++++++|.+|+|||||+|+|.+......... .|.+.....+.... .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~---~g~T~~~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPI---PGETKVWQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCC---CCeeEeEEEEEcCC---CEEEEECcCC
Confidence 467899999999999999999987654333221 22222222223222 3689999983
No 323
>KOG1954|consensus
Probab=98.73 E-value=1e-07 Score=74.32 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=77.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCcccceeeeeEEEEEECCe-----------------------------
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSS-SRKSTLGLDNFNKEYKVDDR----------------------------- 57 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~----------------------------- 57 (189)
+.=|+++|+-.+||||||+.|....|+... -++||. ++.....+-+..
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 456899999999999999999998886432 123332 332222221100
Q ss_pred ----------EEEEEEEeCCCcc-----------ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc
Q psy17231 58 ----------SIQMQLWDTGGME-----------RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK 116 (189)
Q Consensus 58 ----------~~~~~i~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p 116 (189)
--.+.++||||.- +|....+.+...+|.++++||...-+--.+....+..++.+ .-.
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--Edk 213 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--EDK 213 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cce
Confidence 0147899999942 34456678889999999999988765555566666666665 345
Q ss_pred EEEEeecccc
Q psy17231 117 IFLCGNNEQC 126 (189)
Q Consensus 117 ~ivv~nK~d~ 126 (189)
+=||.||+|.
T Consensus 214 iRVVLNKADq 223 (532)
T KOG1954|consen 214 IRVVLNKADQ 223 (532)
T ss_pred eEEEeccccc
Confidence 5678999873
No 324
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.73 E-value=4.2e-08 Score=70.15 Aligned_cols=56 Identities=27% Similarity=0.332 Sum_probs=38.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 69 (189)
.++++++|.||+|||||+|++.+....... +..|.+.....+..+. .+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~---~~pg~T~~~~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVG---ATPGVTKSMQEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceec---CCCCeEcceEEEEeCC---CEEEEECcCC
Confidence 479999999999999999999986653332 2223333333333332 5789999983
No 325
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.72 E-value=2.5e-07 Score=70.36 Aligned_cols=88 Identities=15% Similarity=0.215 Sum_probs=57.0
Q ss_pred EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------
Q psy17231 59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------- 129 (189)
Q Consensus 59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------- 129 (189)
+.+.|++|.|--... -....-+|.+++|.-..-.+..+.++. -+. .+-=|+|.||+|..+.
T Consensus 144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~---Gim----EiaDi~vINKaD~~~A~~a~r~l~~ 213 (323)
T COG1703 144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA---GIM----EIADIIVINKADRKGAEKAARELRS 213 (323)
T ss_pred CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh---hhh----hhhheeeEeccChhhHHHHHHHHHH
Confidence 456777777632221 345566787777766544444444433 222 2455789999874432
Q ss_pred --------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 130 --------------ISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 130 --------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
.++++.+||.+|+|++++++.+.+...
T Consensus 214 al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 214 ALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 238899999999999999999877543
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.70 E-value=5.4e-08 Score=70.70 Aligned_cols=80 Identities=19% Similarity=0.195 Sum_probs=59.4
Q ss_pred cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------------
Q psy17231 72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------- 129 (189)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------- 129 (189)
+...+..+++.++++++|+|++++.. .|...+.....++|+++|+||.|+...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 46677888999999999999987642 122222222347899999999886311
Q ss_pred CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 130 ISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 130 ~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
...++.+||++|.|++++++++.+.+.
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 015789999999999999999988663
No 327
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.70 E-value=3.1e-07 Score=71.62 Aligned_cols=66 Identities=18% Similarity=0.328 Sum_probs=47.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-----C---CcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSS-----S---RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER 71 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~-----~---~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 71 (189)
-..++|+++|++|+|||||+|.|++....... . ..+++.+......+.-++....+.++||||.-+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 34689999999999999999999876432221 1 234444555555666677788999999999654
No 328
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=4.8e-08 Score=74.00 Aligned_cols=118 Identities=14% Similarity=0.087 Sum_probs=79.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCC----------C--CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDT----------F--ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER 71 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~----------~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 71 (189)
...++++|..+|.-.-|||||..++..-- | .+..+.+...|+++......+.-....+...|+||+.+
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 35788999999999999999999884211 1 12223333446666666666654455678999999999
Q ss_pred cccchHHHhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhCCCCcEE-EEeeccccc
Q psy17231 72 VASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIF-LCGNNEQCH 127 (189)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~d~~ 127 (189)
|-...-.-..+.|+.|+|+.++|. ++-+.+ .-.++. +.|.| ++.||+|+-
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi----Llarqv--Gvp~ivvflnK~Dmv 141 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHI----LLARQV--GVPYIVVFLNKVDMV 141 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh----hhhhhc--CCcEEEEEEeccccc
Confidence 876555666678999999999874 333222 112222 56555 566998854
No 329
>KOG2655|consensus
Probab=98.65 E-value=3.4e-07 Score=71.74 Aligned_cols=116 Identities=14% Similarity=0.212 Sum_probs=69.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCC-------CCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---ch-
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISS-------SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---IT- 76 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~- 76 (189)
.+.++++|++|.|||||+|.|+...+... .....+..+......+.-++....+.++||||.-+... .|
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999986644322 12222444455555555567788999999999643211 11
Q ss_pred ---------------------HHHhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231 77 ---------------------SSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC 126 (189)
Q Consensus 77 ---------------------~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~ 126 (189)
+..+. ..|++++....+.. ++..++ +..+......+.+|-|.-|+|.
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~l~~~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKKLSKKVNLIPVIAKADT 170 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHHHhccccccceeecccc
Confidence 11112 45788877775543 122221 1112222235777777888664
No 330
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.5e-07 Score=72.11 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=93.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCcccceeee-----eEE-------EEEE----------CCeEEE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDT---FISSSSRKSTLGLDN-----FNK-------EYKV----------DDRSIQ 60 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~---~~~~~~~~~t~~~~~-----~~~-------~~~~----------~~~~~~ 60 (189)
.+.++|.++|...-|||||..+|.+-- +..+..+.-|+..-+ +.. .+.. ......
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 468999999999999999999996432 111111111110000 000 0000 012356
Q ss_pred EEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------
Q psy17231 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------- 129 (189)
Q Consensus 61 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------- 129 (189)
+.|.|.||++-.....-.-..-.|++++|+.++.+.---+....+.. .+...-..+|++-||.|+-..
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A-leIigik~iiIvQNKIDlV~~E~AlE~y~qIk 166 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMA-LEIIGIKNIIIVQNKIDLVSRERALENYEQIK 166 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHH-HhhhccceEEEEecccceecHHHHHHHHHHHH
Confidence 89999999986544332333345899999998754221122222222 222235789999999774211
Q ss_pred ---------CCceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231 130 ---------ISSTYKTSCKTGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 130 ---------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 159 (189)
..+++.+||..+.||+.+++++.+.+....
T Consensus 167 ~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 167 EFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 238999999999999999999988876543
No 331
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.63 E-value=1.6e-07 Score=71.92 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=33.5
Q ss_pred CCcEEEEeeccccccc-----------------CCceEEeeccCCCCHHHHHHHHHHH
Q psy17231 114 NAKIFLCGNNEQCHNL-----------------ISSTYKTSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 114 ~~p~ivv~nK~d~~~~-----------------~~~~~~~Sa~~~~~i~~~~~~i~~~ 154 (189)
..+-++|.||.|+... ..+++.+||++|.|++++++|+..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3677999999887541 1378999999999999999998763
No 332
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.62 E-value=2.7e-07 Score=70.94 Aligned_cols=58 Identities=26% Similarity=0.345 Sum_probs=40.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 69 (189)
.+.++++++|.+|||||||+|+|.+........ ..|.+.....+..+. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~---~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN---RPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC---CCCeecceEEEEeCC---CEEEEECCCc
Confidence 356899999999999999999999766433322 222233333444432 4689999997
No 333
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.61 E-value=1e-07 Score=69.23 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCC-----CCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISS-----SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 69 (189)
..+++++|.+|+|||||+|+|.+...... .......|.+.....+.... .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 45899999999999999999987543211 00011123333344444433 4689999994
No 334
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.61 E-value=1.6e-07 Score=67.15 Aligned_cols=57 Identities=23% Similarity=0.264 Sum_probs=38.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 69 (189)
..++++++|.+|+|||||+|++.+..+.... ...+.+.....+..+ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~---~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVG---NKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeec---CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4579999999999999999999987653221 111223333333333 35789999995
No 335
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.60 E-value=2e-07 Score=65.51 Aligned_cols=57 Identities=28% Similarity=0.283 Sum_probs=37.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 69 (189)
...+++++|.+|+|||||+|++.+..... ..++.+.+.....+..++ .+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~---~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSAS---TSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccc---cCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 45788999999999999999998654322 133444333222222222 5799999993
No 336
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.60 E-value=2.3e-07 Score=71.71 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=40.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME 70 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 70 (189)
...++++++|.+|||||||+|+|.+....... +..|.+.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~---~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG---NRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC---CCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 35689999999999999999999987653322 2223333333344433 47899999974
No 337
>KOG1547|consensus
Probab=98.60 E-value=1e-06 Score=65.09 Aligned_cols=64 Identities=16% Similarity=0.298 Sum_probs=45.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC-------CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFIS-------SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER 71 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 71 (189)
.++|+++|.+|.|||||+|.+....... ..+...|+.+...+..+.-++.+.++.++||||.-+
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 5899999999999999999996544322 112334444444445555567778899999999643
No 338
>KOG1486|consensus
Probab=98.56 E-value=2.8e-06 Score=63.26 Aligned_cols=97 Identities=22% Similarity=0.213 Sum_probs=63.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------chHHH
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------ITSSY 79 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~ 79 (189)
-.-+++++|-|.+|||||+..+..-.-.... +..| ..+.....+++++ ..+++.|.||..+-.+ ..-+.
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~-yeFT-TLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAAS-YEFT-TLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhc-eeee-EEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEE
Confidence 3569999999999999999999754432222 1222 1244444555555 5789999999754322 22345
Q ss_pred hcCCcEEEEEEeCCChhhHHH-HHHHHHH
Q psy17231 80 YKFAEAAILVFSLDNAASFHV-LSQHLLE 107 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~-~~~~~~~ 107 (189)
.+.+|.++.|.|++..+.-.+ +.+.+..
T Consensus 137 ArtaDlilMvLDatk~e~qr~~le~ELe~ 165 (364)
T KOG1486|consen 137 ARTADLILMVLDATKSEDQREILEKELEA 165 (364)
T ss_pred eecccEEEEEecCCcchhHHHHHHHHHHH
Confidence 677899999999987765443 3444443
No 339
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.55 E-value=5e-07 Score=71.51 Aligned_cols=83 Identities=16% Similarity=0.028 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCcccc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTF-ISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGMERV 72 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~ 72 (189)
+++.|+|.|++|||||++.+..... .....+..|+ +.....+.+.+. ...+.+.|.||...-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi--~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTI--EPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCC--CCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 7899999999999999999998876 4444334444 222233333221 246789999997542
Q ss_pred c----c---chHHHhcCCcEEEEEEeCC
Q psy17231 73 A----S---ITSSYYKFAEAAILVFSLD 93 (189)
Q Consensus 73 ~----~---~~~~~~~~~~~~i~v~d~~ 93 (189)
. . ..-..++.+|++++|+++.
T Consensus 81 As~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 81 ASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1 1 3345677899999999974
No 340
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.55 E-value=2.4e-07 Score=71.64 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=62.2
Q ss_pred HHHhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCcEEEEeecccccc-------------cCCceEEeeccCCC
Q psy17231 77 SSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN-------------LISSTYKTSCKTGE 142 (189)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-------------~~~~~~~~Sa~~~~ 142 (189)
+..+.++|.+++|+|++++. ++..+.+|+..+... ++|+++|+||+|+.. ...+++.+||+++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~ 150 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGE 150 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 44578899999999999987 888888898877654 799999999998732 12378999999999
Q ss_pred CHHHHHHHHHH
Q psy17231 143 GVEEMFADIGR 153 (189)
Q Consensus 143 ~i~~~~~~i~~ 153 (189)
|+++++..+..
T Consensus 151 gi~~L~~~L~~ 161 (287)
T cd01854 151 GLDELREYLKG 161 (287)
T ss_pred cHHHHHhhhcc
Confidence 99999888764
No 341
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.54 E-value=3.3e-07 Score=64.39 Aligned_cols=81 Identities=10% Similarity=0.017 Sum_probs=57.5
Q ss_pred cchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccC
Q psy17231 74 SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKT 140 (189)
Q Consensus 74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~ 140 (189)
.+.....+++|++++|+|++++..... ..+...+.. .++|+++|+||+|+... ..+++.+||++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~ 80 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKE 80 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccc
Confidence 345667778999999999987643222 122222222 36999999999996311 12679999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy17231 141 GEGVEEMFADIGRQLIL 157 (189)
Q Consensus 141 ~~~i~~~~~~i~~~i~~ 157 (189)
+.|++++++.+.+.+..
T Consensus 81 ~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 81 RLGTKILRRTIKELAKI 97 (156)
T ss_pred cccHHHHHHHHHHHHhh
Confidence 99999999999877643
No 342
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=7e-07 Score=70.00 Aligned_cols=86 Identities=17% Similarity=0.090 Sum_probs=58.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE--------------CCeEEEEEEEeCCCccc--
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV--------------DDRSIQMQLWDTGGMER-- 71 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~~i~D~~g~~~-- 71 (189)
.+++.|+|.||||||||+|++..........+..|+.-+.....+.. .-....+.++|.+|...
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 46899999999999999999998886656655666532222221111 11245689999998643
Q ss_pred --cccchHH---HhcCCcEEEEEEeCC
Q psy17231 72 --VASITSS---YYKFAEAAILVFSLD 93 (189)
Q Consensus 72 --~~~~~~~---~~~~~~~~i~v~d~~ 93 (189)
-..+-+. -++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2334444 467899999999975
No 343
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.51 E-value=1.4e-07 Score=66.28 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCccc--ce--eeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKST--LG--LDNFNKEYKVDDRSIQMQLWDTGGMERVA 73 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t--~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 73 (189)
-.++++|++|||||||+|.|.............. .| .+.....+...+. -.++||||..++.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 5788999999999999999987643221110111 01 1122223444332 3789999987654
No 344
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.50 E-value=3.3e-07 Score=71.92 Aligned_cols=59 Identities=27% Similarity=0.268 Sum_probs=42.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME 70 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 70 (189)
....++.++|-||||||||||+|.+...... .+..|.+.....+.... .+.++||||..
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~---s~~PG~Tk~~q~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKT---SNRPGTTKGIQWIKLDD---GIYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceee---CCCCceecceEEEEcCC---CeEEecCCCcC
Confidence 3458899999999999999999998776322 22224455554555544 37899999964
No 345
>PRK12289 GTPase RsgA; Reviewed
Probab=98.49 E-value=6.9e-07 Score=70.75 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=61.2
Q ss_pred chHHHhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCcEEEEeecccccc-------------cCCceEEeeccC
Q psy17231 75 ITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN-------------LISSTYKTSCKT 140 (189)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-------------~~~~~~~~Sa~~ 140 (189)
+....+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+|+.. ...+++.+||++
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~t 159 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVET 159 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 3445678999999999998875 55567888876644 3799999999999632 123689999999
Q ss_pred CCCHHHHHHHHHHH
Q psy17231 141 GEGVEEMFADIGRQ 154 (189)
Q Consensus 141 ~~~i~~~~~~i~~~ 154 (189)
+.|++++++.+...
T Consensus 160 g~GI~eL~~~L~~k 173 (352)
T PRK12289 160 GIGLEALLEQLRNK 173 (352)
T ss_pred CCCHHHHhhhhccc
Confidence 99999999988653
No 346
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.48 E-value=1.8e-05 Score=55.13 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=77.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCC-Cccc-------------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG-GMER------------- 71 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~-g~~~------------- 71 (189)
...+||.+.|+|||||||++.++...--... -+++ -+.+..+.-++....|.+.|+. |...
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g----~kvg-Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvG 77 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG----YKVG-GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVG 77 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcC----ceee-eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccc
Confidence 4578999999999999999999974321111 1111 2333444456667778888876 3211
Q ss_pred -ccc-----------chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccc-------ccccCC
Q psy17231 72 -VAS-----------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQ-------CHNLIS 131 (189)
Q Consensus 72 -~~~-----------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d-------~~~~~~ 131 (189)
|.- .....++.+| ++++|--.+--+ ..+++...+.... .+.|+|.+.-+.. .+....
T Consensus 78 kY~V~v~~le~i~~~al~rA~~~aD--vIIIDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~ 154 (179)
T COG1618 78 KYGVNVEGLEEIAIPALRRALEEAD--VIIIDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGG 154 (179)
T ss_pred eEEeeHHHHHHHhHHHHHHHhhcCC--EEEEecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCC
Confidence 100 1122334445 444564444222 1233333333333 5799888888752 333322
Q ss_pred ceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 132 STYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 132 ~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
-++. .+.+|=+.++..+...+.
T Consensus 155 v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 155 VYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred EEEE---EccchhhHHHHHHHHHhc
Confidence 2332 566666688888777664
No 347
>PRK00098 GTPase RsgA; Reviewed
Probab=98.48 E-value=4.3e-07 Score=70.60 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=58.1
Q ss_pred HHhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceEEeeccCCC
Q psy17231 78 SYYKFAEAAILVFSLDNAASFHV-LSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTYKTSCKTGE 142 (189)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~~~~ 142 (189)
....++|.+++|+|++++..+.. +..|+..+... ++|+++|+||+|+.. ...+++.+||+++.
T Consensus 76 ~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 76 LIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred ceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 34688999999999988865444 57887776543 799999999999741 12378999999999
Q ss_pred CHHHHHHHHHH
Q psy17231 143 GVEEMFADIGR 153 (189)
Q Consensus 143 ~i~~~~~~i~~ 153 (189)
|++++++.+..
T Consensus 154 gi~~L~~~l~g 164 (298)
T PRK00098 154 GLDELKPLLAG 164 (298)
T ss_pred cHHHHHhhccC
Confidence 99999988743
No 348
>PRK12288 GTPase RsgA; Reviewed
Probab=98.47 E-value=3.7e-07 Score=72.21 Aligned_cols=61 Identities=26% Similarity=0.342 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCccc--ce--eeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKST--LG--LDNFNKEYKVDDRSIQMQLWDTGGMERVA 73 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t--~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 73 (189)
-++++|.+|||||||+|+|.............. .| .+.....+.+.+. ..++||||..++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 378999999999999999986643222111110 01 1222222333321 2599999987764
No 349
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.47 E-value=6.4e-07 Score=62.93 Aligned_cols=58 Identities=26% Similarity=0.269 Sum_probs=36.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 69 (189)
....+++++|.+|+|||||+|.+.+...........+ +........+ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~---t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGT---TTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCc---ccceEEEEec---CCEEEEECCCC
Confidence 3467899999999999999999997653221111111 1112222232 25789999984
No 350
>KOG1491|consensus
Probab=98.46 E-value=1.2e-06 Score=67.76 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=60.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE---------------CCeEEEEEEEeCCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV---------------DDRSIQMQLWDTGGM 69 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---------------~~~~~~~~i~D~~g~ 69 (189)
...++++.|+|.|+||||||+|.|.........-+..|+ +.....+.. ......+.++|++|.
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TI--dPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTI--DPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCccee--ccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 346789999999999999999999988877776666665 332222222 122467899999986
Q ss_pred ccc----ccchHHH---hcCCcEEEEEEeCC
Q psy17231 70 ERV----ASITSSY---YKFAEAAILVFSLD 93 (189)
Q Consensus 70 ~~~----~~~~~~~---~~~~~~~i~v~d~~ 93 (189)
..- ..+-+.+ ++.+|+++-|+++.
T Consensus 95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 432 2344443 56789999888853
No 351
>PRK12288 GTPase RsgA; Reviewed
Probab=98.41 E-value=9.8e-07 Score=69.83 Aligned_cols=72 Identities=18% Similarity=0.156 Sum_probs=59.9
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------CCceEEeeccCCCC
Q psy17231 80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEG 143 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~ 143 (189)
..++|.+++|++++...++..+..|+..+.. .++|.++|+||+|+... ..+++++||+++.|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 4568999999999888899999999876544 37999999999997431 23789999999999
Q ss_pred HHHHHHHHHH
Q psy17231 144 VEEMFADIGR 153 (189)
Q Consensus 144 i~~~~~~i~~ 153 (189)
++++++.+..
T Consensus 196 ideL~~~L~~ 205 (347)
T PRK12288 196 LEELEAALTG 205 (347)
T ss_pred HHHHHHHHhh
Confidence 9999998865
No 352
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.41 E-value=6.8e-07 Score=67.57 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=36.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcc----cceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKS----TLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA 73 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 73 (189)
..++++|++|||||||+|+|............. ....+.....+...+ -.++||||...+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence 467899999999999999998654322211111 000122222233322 2699999986543
No 353
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.40 E-value=5.1e-06 Score=61.99 Aligned_cols=89 Identities=18% Similarity=0.144 Sum_probs=51.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCC-cccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------c
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYD--TFISSSSR-KSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------I 75 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~--~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~ 75 (189)
..+-.-|.|+|++++|||+|+|+|.+. .+...... ..|.|+-........ +....+.++||+|...... .
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhh
Confidence 345566779999999999999999988 55433321 222232222221111 1246789999999754322 1
Q ss_pred hHHHhc--CCcEEEEEEeCCC
Q psy17231 76 TSSYYK--FAEAAILVFSLDN 94 (189)
Q Consensus 76 ~~~~~~--~~~~~i~v~d~~~ 94 (189)
.-..+. -++++++..+.+.
T Consensus 83 ~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHHhCEEEEeccCcc
Confidence 112222 2677776666543
No 354
>KOG0465|consensus
Probab=98.39 E-value=5.4e-07 Score=74.25 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC-----CCCCCC---------CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT-----FISSSS---------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS 74 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~-----~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 74 (189)
-+|-++..--+||||+.+++.... ...... ....-|......-....+..+.++++||||+.+|.-
T Consensus 40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~ 119 (721)
T KOG0465|consen 40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTF 119 (721)
T ss_pred cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEE
Confidence 467788888999999999985211 110000 011113344443233334468899999999999999
Q ss_pred chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeec
Q psy17231 75 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNN 123 (189)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK 123 (189)
.....++..|++|+|.+....-.-+....|. ++.++ ++|.|...||
T Consensus 120 EVeRALrVlDGaVlvl~aV~GVqsQt~tV~r-Q~~ry--~vP~i~FiNK 165 (721)
T KOG0465|consen 120 EVERALRVLDGAVLVLDAVAGVESQTETVWR-QMKRY--NVPRICFINK 165 (721)
T ss_pred EehhhhhhccCeEEEEEcccceehhhHHHHH-HHHhc--CCCeEEEEeh
Confidence 9999999999999999876542222333444 44555 7999999999
No 355
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.38 E-value=3.2e-06 Score=66.46 Aligned_cols=142 Identities=20% Similarity=0.183 Sum_probs=89.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCccc----------cee--eeeEEEEEECC-----------------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKST----------LGL--DNFNKEYKVDD----------------- 56 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t----------~~~--~~~~~~~~~~~----------------- 56 (189)
..++.+...|....|||||.-.|..++..+..-...+ .|. +.....+-+++
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 4568888999999999999999976665443211110 010 11111111111
Q ss_pred ----eEEEEEEEeCCCcccccc--chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-
Q psy17231 57 ----RSIQMQLWDTGGMERVAS--ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL- 129 (189)
Q Consensus 57 ----~~~~~~i~D~~g~~~~~~--~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~- 129 (189)
.+--+.+.|+.|++.|.. +...+-+..|..++++.+++.-+ .+.+.+.-+... -..|+||+.||+|+...
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~a-~~lPviVvvTK~D~~~dd 271 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIALA-MELPVIVVVTKIDMVPDD 271 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhhh-hcCCEEEEEEecccCcHH
Confidence 113478999999998864 45556667898899988887543 333333333322 27999999999773211
Q ss_pred -----------------------------------------CCceEEeeccCCCCHHHHHHH
Q psy17231 130 -----------------------------------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 130 -----------------------------------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
..|+|.+|+.+|+|++-+.+-
T Consensus 272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~ 333 (527)
T COG5258 272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF 333 (527)
T ss_pred HHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence 228899999999999765443
No 356
>PRK12289 GTPase RsgA; Reviewed
Probab=98.38 E-value=8e-07 Score=70.39 Aligned_cols=60 Identities=27% Similarity=0.353 Sum_probs=35.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccc--e--eeeeEEEEEECCeEEEEEEEeCCCcccc
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTL--G--LDNFNKEYKVDDRSIQMQLWDTGGMERV 72 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~--~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 72 (189)
.++|+|++|||||||+|+|............... | .+.....+...+. ..++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence 4799999999999999999865432221111100 0 1222233333322 269999997653
No 357
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.37 E-value=1.6e-06 Score=78.59 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=66.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCC--Ccc--cceeeeeEEEEEECCeEEEEEEEeCCCccc--------cccchHH
Q psy17231 11 VILCGEYGVGKSSLFRRYAYDTFISSSS--RKS--TLGLDNFNKEYKVDDRSIQMQLWDTGGMER--------VASITSS 78 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 78 (189)
.+|+|++|+||||+++.. +..++-... ... .++-+.. ..+.+.+ +-.++||+|..- ....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 689999999999999987 333432210 011 1111111 1222333 346999999321 1123433
Q ss_pred Hh---------cCCcEEEEEEeCCCh-----hhH----HHHHHHHHHHHHhC-CCCcEEEEeeccccccc
Q psy17231 79 YY---------KFAEAAILVFSLDNA-----ASF----HVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL 129 (189)
Q Consensus 79 ~~---------~~~~~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~ 129 (189)
++ +-.+++|+++|+++- +.. ..++..+.++.+.. -..||-|++||||+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 32 246999999997642 222 23445555555544 68999999999997643
No 358
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.34 E-value=1.1e-06 Score=70.14 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=60.8
Q ss_pred ccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------C
Q psy17231 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------I 130 (189)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~ 130 (189)
.++|..+...+...++++++|+|+.+... .|...+.+...+.|+++|+||+|+... .
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g 124 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG 124 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence 34677777788889999999999976542 344555544447899999999886321 1
Q ss_pred ---CceEEeeccCCCCHHHHHHHHHHH
Q psy17231 131 ---SSTYKTSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 131 ---~~~~~~Sa~~~~~i~~~~~~i~~~ 154 (189)
..++.+||++|.|++++++.+.+.
T Consensus 125 ~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 125 LKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 148999999999999999998653
No 359
>KOG0464|consensus
Probab=98.31 E-value=1.1e-07 Score=75.21 Aligned_cols=117 Identities=13% Similarity=0.119 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh--------CCCCCCC------CCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY--------DTFISSS------SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS 74 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~--------~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 74 (189)
-+|.++..-.+||||-..|+.. +.+...+ ..+..-|+.....-+.++++..+++++||||+.+|.-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 4788999999999999999852 1111111 0011125566676777788889999999999999999
Q ss_pred chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231 75 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN 128 (189)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~ 128 (189)
.....++..|+++.|||.+..-.-+.+..|.+.-. + ++|-++..||.|+..
T Consensus 118 everclrvldgavav~dasagve~qtltvwrqadk-~--~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK-F--KIPAHCFINKMDKLA 168 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeeehhccc-c--CCchhhhhhhhhhhh
Confidence 99999999999999999986544445566654422 2 689999999977543
No 360
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.28 E-value=1.9e-06 Score=66.06 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=35.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCC-------CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSS-------SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA 73 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 73 (189)
..+++|.+|||||||+|+|......... ...+| +.....+.+.+.. .++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHT---Tt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHT---TTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCc---cceEEEEEcCCCC---EEEeCCCCCccC
Confidence 6789999999999999999753221111 11122 3333344553212 589999987654
No 361
>KOG0467|consensus
Probab=98.27 E-value=5e-06 Score=70.21 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=80.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC------------CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDT------------FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS 74 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 74 (189)
..-+++++....-|||||+-.|.... |.+..+-+.+-|++.....+..--+.+.++++|.||+.+|.+
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s 87 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS 87 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence 34578899999999999999995332 233322234445555555555544568899999999999999
Q ss_pred chHHHhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeeccc
Q psy17231 75 ITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQ 125 (189)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d 125 (189)
......+-+|++++++|+... ++..-+ ++.+. ++...|+|.||.|
T Consensus 88 evssas~l~d~alvlvdvvegv~~qt~~vl----rq~~~--~~~~~~lvinkid 135 (887)
T KOG0467|consen 88 EVSSASRLSDGALVLVDVVEGVCSQTYAVL----RQAWI--EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhcCCcEEEEeeccccchhHHHHH----HHHHH--ccCceEEEEehhh
Confidence 999999999999999998643 333322 23333 3688899999977
No 362
>KOG0099|consensus
Probab=98.25 E-value=3.9e-05 Score=57.64 Aligned_cols=107 Identities=13% Similarity=0.137 Sum_probs=77.2
Q ss_pred EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhC--CCCcEEEEeeccc
Q psy17231 58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQ 125 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d 125 (189)
++.|+.+|.+|+.+-..-|-..+.+..++++|...+. ...+.+.-.....++... ..+.+|+..||.|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 4568999999999989999999999999999988753 123333344444555443 5699999999955
Q ss_pred cccc----------------------------------------------------------CCceEEeeccCCCCHHHH
Q psy17231 126 CHNL----------------------------------------------------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 126 ~~~~----------------------------------------------------------~~~~~~~Sa~~~~~i~~~ 147 (189)
+... .+=++.++|.+-+||..+
T Consensus 281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV 360 (379)
T KOG0099|consen 281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 360 (379)
T ss_pred HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence 2100 012256899999999999
Q ss_pred HHHHHHHHHHhhhhhhh
Q psy17231 148 FADIGRQLILSNRSRLE 164 (189)
Q Consensus 148 ~~~i~~~i~~~~~~~~~ 164 (189)
|......+...+-++.+
T Consensus 361 FnDcrdiIqr~hlrqye 377 (379)
T KOG0099|consen 361 FNDCRDIIQRMHLRQYE 377 (379)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99988888776655443
No 363
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.19 E-value=4.9e-06 Score=66.41 Aligned_cols=60 Identities=27% Similarity=0.259 Sum_probs=36.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCC--CCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISS--SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER 71 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 71 (189)
.++.++|.+|||||||+|+|........ .......+.+.....+..++ .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence 4799999999999999999987432110 00011122233233333322 247999999754
No 364
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.17 E-value=4.9e-06 Score=64.40 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=36.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcc----cceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKS----TLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA 73 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 73 (189)
..++++|++|+|||||+|.|.+........... ....+.....+...+. ..++|+||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 578999999999999999998654322211110 0011222223333321 2589999987653
No 365
>KOG0448|consensus
Probab=98.15 E-value=4.8e-05 Score=63.87 Aligned_cols=118 Identities=19% Similarity=0.296 Sum_probs=69.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccc------------------------------------------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTL------------------------------------------ 43 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~------------------------------------------ 43 (189)
...+||+|.|..+.||||++|++...+..+......|.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 45789999999999999999999776655443322220
Q ss_pred eeeeeEEEEEECCe----EEEEEEEeCCCcc---ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc
Q psy17231 44 GLDNFNKEYKVDDR----SIQMQLWDTGGME---RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK 116 (189)
Q Consensus 44 ~~~~~~~~~~~~~~----~~~~~i~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p 116 (189)
+-..-...+..++. .-.+.+.|.||.. +...-...+..++|++|+|..+.+..+..+.. ++....+. .+-
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~-Ff~~vs~~--Kpn 263 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKVSEE--KPN 263 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHhhcc--CCc
Confidence 00000001111110 1135778888854 23334467788999999999988876654443 44444443 344
Q ss_pred EEEEeecccc
Q psy17231 117 IFLCGNNEQC 126 (189)
Q Consensus 117 ~ivv~nK~d~ 126 (189)
++++-||.|+
T Consensus 264 iFIlnnkwDa 273 (749)
T KOG0448|consen 264 IFILNNKWDA 273 (749)
T ss_pred EEEEechhhh
Confidence 4555566454
No 366
>PRK13796 GTPase YqeH; Provisional
Probab=98.14 E-value=5.8e-06 Score=66.05 Aligned_cols=60 Identities=27% Similarity=0.280 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCC--CCcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSS--SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME 70 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 70 (189)
..++.++|.+|||||||+|+|......... ...+..|.+.....+.+++. ..++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 347899999999999999999854311100 00111222333333444332 3799999974
No 367
>KOG1487|consensus
Probab=98.11 E-value=3.1e-05 Score=58.04 Aligned_cols=145 Identities=17% Similarity=0.122 Sum_probs=88.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------chHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-------ITSSYY 80 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~ 80 (189)
.-++-++|=|.+||||++..|.+-..+... ++.|. .........+. ..++++.|.||..+-.. ..-+..
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vas-yeftt-l~~vpG~~~y~--gaKiqlldlpgiiegakdgkgrg~qviava 134 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAA-YEFTT-LTTVPGVIRYK--GAKIQLLDLPGIIEGAKDGKGRGKQVIAVA 134 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCcccc-cccee-EEEecceEecc--ccceeeecCcchhcccccCCCCccEEEEEe
Confidence 348889999999999999999865433222 22221 11112222233 35789999999754321 223456
Q ss_pred cCCcEEEEEEeCCChhhHHHHH-----------------------------------------HHHHHHHHhC-------
Q psy17231 81 KFAEAAILVFSLDNAASFHVLS-----------------------------------------QHLLEIVTYA------- 112 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~-----------------------------------------~~~~~~~~~~------- 112 (189)
+.|+.+++|.|+-.+-+-..+. ..+.+-+.+.
T Consensus 135 rtcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~ 214 (358)
T KOG1487|consen 135 RTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRF 214 (358)
T ss_pred ecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeec
Confidence 6788999999976554322221 0000000000
Q ss_pred ---------------CCCcEEEEeecccccc--------cCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 113 ---------------ENAKIFLCGNNEQCHN--------LISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 113 ---------------~~~p~ivv~nK~d~~~--------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
-.+|.+.+.||.|... .....+.+||-++.|++++++.+-..+.
T Consensus 215 DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdii~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 215 DATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred CcchhhhhhhhccCceeeeeeeeecccceeeeeccceeeeccceeecccccccchHHHHHHHhhcch
Confidence 1377888888865332 2346788999999999999998876543
No 368
>PRK00098 GTPase RsgA; Reviewed
Probab=98.10 E-value=8.2e-06 Score=63.47 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTF 33 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~ 33 (189)
..++++|++|+|||||+|+|.+...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 4688999999999999999986543
No 369
>KOG1143|consensus
Probab=98.09 E-value=1.9e-05 Score=62.12 Aligned_cols=139 Identities=23% Similarity=0.249 Sum_probs=84.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCC---------------------CCcccceeeeeEEEEEECCe--------
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSS---------------------SRKSTLGLDNFNKEYKVDDR-------- 57 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~-------- 57 (189)
..+++.++|.-.+|||||+-.|..+...... .....+|++...+.+.+...
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 4689999999999999999988655432211 11112333333332222111
Q ss_pred --EEEEEEEeCCCcccccc--chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc------
Q psy17231 58 --SIQMQLWDTGGMERVAS--ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH------ 127 (189)
Q Consensus 58 --~~~~~i~D~~g~~~~~~--~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~------ 127 (189)
.--+.++|.+|+.+|.. ++...-...|.+.+|++++..-.. ..+..+--+... ++|++++.+|.|+-
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAAL--NIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence 22468999999988865 333333456888888887654322 112222222222 79999999995521
Q ss_pred -------------------------------------ccCCceEEeeccCCCCHHHHH
Q psy17231 128 -------------------------------------NLISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 128 -------------------------------------~~~~~~~~~Sa~~~~~i~~~~ 148 (189)
+.+.|+|.+|+.+|+++..+.
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 112388999999999997643
No 370
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=1.9e-05 Score=65.13 Aligned_cols=110 Identities=14% Similarity=0.102 Sum_probs=65.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+++-+.++||||+|||||++.|...... .|+.-..... .-..++..++.+..+|.. . +..-.....+|.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk------~ti~~i~GPi-TvvsgK~RRiTflEcp~D--l-~~miDvaKIaDL 136 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTK------QTIDEIRGPI-TVVSGKTRRITFLECPSD--L-HQMIDVAKIADL 136 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHH------hhhhccCCce-EEeecceeEEEEEeChHH--H-HHHHhHHHhhhe
Confidence 45677779999999999999999754321 1111011111 123455678899998832 2 122345677899
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~ 127 (189)
+++++|.+-.--.+. -.++.-+..+ .-+.++-|.++-|+.
T Consensus 137 VlLlIdgnfGfEMET-mEFLnil~~H-GmPrvlgV~ThlDlf 176 (1077)
T COG5192 137 VLLLIDGNFGFEMET-MEFLNILISH-GMPRVLGVVTHLDLF 176 (1077)
T ss_pred eEEEeccccCceehH-HHHHHHHhhc-CCCceEEEEeecccc
Confidence 999999765422222 2334333333 345666788886653
No 371
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.06 E-value=2.5e-05 Score=54.79 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=50.2
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHH
Q psy17231 84 EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
|++++|+|+.++.+... .++........++|+|+|+||+|+... ...++.+||++|.|++++.+
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 67899999988765432 233311111247999999999887311 12468899999999999999
Q ss_pred HHHHHHH
Q psy17231 150 DIGRQLI 156 (189)
Q Consensus 150 ~i~~~i~ 156 (189)
.+.+.+.
T Consensus 79 ~i~~~~~ 85 (155)
T cd01849 79 AFTKQTN 85 (155)
T ss_pred HHHHHhH
Confidence 9877654
No 372
>KOG0085|consensus
Probab=98.04 E-value=5.6e-06 Score=60.99 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=22.3
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 134 YKTSCKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 134 ~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
+.++|.+-.||..+|..+-..+++..-
T Consensus 327 HfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 327 HFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred eeeecccchhHHHHHHHHHHHHHHhhh
Confidence 568899999999999998888876543
No 373
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.03 E-value=8.8e-05 Score=58.19 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=48.1
Q ss_pred EEEEEEEeCCCccccccc----hHHHh--------cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhCCCCcEEEEeecc
Q psy17231 58 SIQMQLWDTGGMERVASI----TSSYY--------KFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNNE 124 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~~----~~~~~--------~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 124 (189)
.+.+.++||||....... ...+. ...+..++|.|++.. +.+.+... .... -.+.-+|.||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~----f~~~--~~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA----FHEA--VGLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH----HHhh--CCCCEEEEECC
Confidence 467899999996533221 11111 245678899998743 33333222 2221 24557899998
Q ss_pred ccccc-----------CCceEEeeccCCCCHHHHH
Q psy17231 125 QCHNL-----------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 125 d~~~~-----------~~~~~~~Sa~~~~~i~~~~ 148 (189)
|.... ..|+.+++ +|++++++-
T Consensus 270 D~t~~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGTAKGGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 84322 23777777 788887653
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.02 E-value=0.00014 Score=55.83 Aligned_cols=83 Identities=11% Similarity=0.037 Sum_probs=48.5
Q ss_pred EEEEEEEeCCCccccccchH----H---Hh-----cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhCCCCcEEEEeecc
Q psy17231 58 SIQMQLWDTGGMERVASITS----S---YY-----KFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNNE 124 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~~~~----~---~~-----~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~ 124 (189)
.+.+.++||||......... . .. ..++..++|.|++.. +.+..... +.+. -.+.=+|.||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~----f~~~--~~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKV----FNEA--VGLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHH----HHhh--CCCCEEEEEcc
Confidence 36789999999754332111 1 11 237889999999743 33333322 2222 13456899997
Q ss_pred ccccc-----------CCceEEeeccCCCCHHHHH
Q psy17231 125 QCHNL-----------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 125 d~~~~-----------~~~~~~~Sa~~~~~i~~~~ 148 (189)
|.... ..|+.+++ +|.+++++-
T Consensus 228 De~~~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 228 DGTAKGGIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCCccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 75322 22666666 777776653
No 375
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.01 E-value=2.4e-05 Score=55.00 Aligned_cols=75 Identities=8% Similarity=0.059 Sum_probs=52.5
Q ss_pred HHhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------C-CceEEeeccCC
Q psy17231 78 SYYKFAEAAILVFSLDNAAS--FHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------I-SSTYKTSCKTG 141 (189)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~-~~~~~~Sa~~~ 141 (189)
..+..+|++++|.|+.++.. ...+.+++.. ...++|+|+|.||+|+... . ...+.+||+.+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~---~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKK---EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHh---ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccc
Confidence 34678999999999988632 2333443332 2235999999999886321 0 12367899999
Q ss_pred CCHHHHHHHHHHHH
Q psy17231 142 EGVEEMFADIGRQL 155 (189)
Q Consensus 142 ~~i~~~~~~i~~~i 155 (189)
.|++++.+.+...+
T Consensus 81 ~~~~~L~~~l~~~~ 94 (157)
T cd01858 81 FGKGSLIQLLRQFS 94 (157)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999986643
No 376
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.00 E-value=5.7e-05 Score=53.26 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy17231 11 VILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~ 31 (189)
++++|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999999765
No 377
>KOG1424|consensus
Probab=97.93 E-value=1.2e-05 Score=65.28 Aligned_cols=57 Identities=25% Similarity=0.170 Sum_probs=40.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME 70 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 70 (189)
.+.|.+||-|||||||+||.|.+.+-... ..|.|.+.+--++.+.. .+.+.|+||..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV---S~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV---SSTPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee---ecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 57889999999999999999998764332 33344344444455443 56899999963
No 378
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.92 E-value=3.9e-05 Score=62.19 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~ 29 (189)
+..|+++|++||||||++.+|.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678899999999999999995
No 379
>PRK14974 cell division protein FtsY; Provisional
Probab=97.92 E-value=0.0001 Score=58.10 Aligned_cols=83 Identities=11% Similarity=0.039 Sum_probs=48.6
Q ss_pred EEEEEEeCCCcccccc-c---hHHH--hcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--
Q psy17231 59 IQMQLWDTGGMERVAS-I---TSSY--YKFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-- 129 (189)
Q Consensus 59 ~~~~i~D~~g~~~~~~-~---~~~~--~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-- 129 (189)
+.+.++||+|...... + ...+ ....+..++|.|+... +..+....+. .. -.+--+++||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~----~~--~~~~giIlTKlD~~~~~G 296 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN----EA--VGIDGVILTKVDADAKGG 296 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH----hc--CCCCEEEEeeecCCCCcc
Confidence 4689999999754322 1 1112 1246788899998653 2333332222 11 2345688999775332
Q ss_pred ---------CCceEEeeccCCCCHHHHHH
Q psy17231 130 ---------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 130 ---------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
..|+.+++ +|.+++++..
T Consensus 297 ~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 297 AALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred HHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 23777776 7888887643
No 380
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.91 E-value=2.7e-05 Score=55.61 Aligned_cols=76 Identities=14% Similarity=0.071 Sum_probs=54.6
Q ss_pred hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCC
Q psy17231 76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGE 142 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~ 142 (189)
....+..+|.+++|+|++++...... .+ .....+.|+++|.||+|+... ...++.+||+++.
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~~-~i----~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~ 87 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRNP-LL----EKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGK 87 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCCh-hh----HhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcc
Confidence 35667899999999999876432111 11 112236899999999997421 1246889999999
Q ss_pred CHHHHHHHHHHHHH
Q psy17231 143 GVEEMFADIGRQLI 156 (189)
Q Consensus 143 ~i~~~~~~i~~~i~ 156 (189)
|++++.+.+...+.
T Consensus 88 gi~~L~~~l~~~l~ 101 (171)
T cd01856 88 GVKKLLKAAKKLLK 101 (171)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999888764
No 381
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.87 E-value=4.3e-05 Score=54.58 Aligned_cols=80 Identities=9% Similarity=-0.003 Sum_probs=44.9
Q ss_pred EEEEEEEeCCCcccccc----chHHHh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccCC
Q psy17231 58 SIQMQLWDTGGMERVAS----ITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLIS 131 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~----~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~~ 131 (189)
...+.++|++|...... ....+. ...+.+++|++...... ...+...+.+.. + ..-++.||.|......
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~-~-~~~viltk~D~~~~~g 156 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL-G-ITGVILTKLDGDARGG 156 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC-C-CCEEEEECCcCCCCcc
Confidence 34578899999743321 111111 24789999999865432 223344443332 2 3557779998766544
Q ss_pred ceEEeeccCCC
Q psy17231 132 STYKTSCKTGE 142 (189)
Q Consensus 132 ~~~~~Sa~~~~ 142 (189)
..+.++..++.
T Consensus 157 ~~~~~~~~~~~ 167 (173)
T cd03115 157 AALSIRAVTGK 167 (173)
T ss_pred hhhhhHHHHCc
Confidence 55555544443
No 382
>KOG0460|consensus
Probab=97.85 E-value=3.6e-05 Score=59.81 Aligned_cols=121 Identities=15% Similarity=0.093 Sum_probs=75.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHh----------CCCC--CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAY----------DTFI--SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV 72 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~----------~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 72 (189)
+.++++|.-+|...-|||||..++.. .+|. +..+.+..-|+++..-++.+.-....+.=.|+||+.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 57889999999999999999988831 1111 11122223355666655655544455677899999988
Q ss_pred ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231 73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127 (189)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~ 127 (189)
....-.-..+.|++|+|+.++|... .+.+..+.-.++. .-..++|..||.|.-
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQV-GV~~ivvfiNKvD~V 183 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQV-GVKHIVVFINKVDLV 183 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHc-CCceEEEEEeccccc
Confidence 6544444556799999999998542 1222222222232 224455667997754
No 383
>PRK13695 putative NTPase; Provisional
Probab=97.85 E-value=0.0007 Score=48.40 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++|++.|++|+|||||++.+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999753
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=97.78 E-value=8.3e-05 Score=59.50 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=48.8
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------C---CceEEeeccCCC
Q psy17231 84 EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------I---SSTYKTSCKTGE 142 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~---~~~~~~Sa~~~~ 142 (189)
..+++|+|+.+.. ..|...+.+...+.|+++|+||+|+... . ..++.+||+++.
T Consensus 71 ~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~ 145 (365)
T PRK13796 71 ALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGH 145 (365)
T ss_pred cEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCC
Confidence 4889999987743 2244445444447899999999997421 0 157899999999
Q ss_pred CHHHHHHHHHHH
Q psy17231 143 GVEEMFADIGRQ 154 (189)
Q Consensus 143 ~i~~~~~~i~~~ 154 (189)
|++++++.+.+.
T Consensus 146 gI~eL~~~I~~~ 157 (365)
T PRK13796 146 GIDELLEAIEKY 157 (365)
T ss_pred CHHHHHHHHHHh
Confidence 999999998654
No 385
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.76 E-value=2.6e-05 Score=52.14 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 386
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.74 E-value=2.6e-05 Score=56.02 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+||+|+|+||+||||+.++|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999865
No 387
>KOG4273|consensus
Probab=97.72 E-value=0.00012 Score=54.79 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=66.8
Q ss_pred ceEEEEEcCCCC--CHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC-ccccccchHHHhcCCc
Q psy17231 8 EQKVILCGEYGV--GKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG-MERVASITSSYYKFAE 84 (189)
Q Consensus 8 ~~~i~i~G~~g~--GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g-~~~~~~~~~~~~~~~~ 84 (189)
...++++|.+|+ ||-+|+.+|....+......... ..++.+++..+.....+++.-.+- .+.+. ..-.......
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~--te~hgwtid~kyysadi~lcishicde~~l-pn~~~a~pl~ 80 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDA--TEFHGWTIDNKYYSADINLCISHICDEKFL-PNAEIAEPLQ 80 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCc--eeeeceEecceeeecceeEEeecccchhcc-CCccccccee
Confidence 456889999999 99999999998888665533222 244444333222222222221111 01111 1111233456
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccc
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQ 125 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d 125 (189)
++++|||++...++..++.|+...--.. ---.+.++||-|
T Consensus 81 a~vmvfdlse~s~l~alqdwl~htdins-fdillcignkvd 120 (418)
T KOG4273|consen 81 AFVMVFDLSEKSGLDALQDWLPHTDINS-FDILLCIGNKVD 120 (418)
T ss_pred eEEEEEeccchhhhHHHHhhcccccccc-chhheecccccc
Confidence 8999999999999999999987433321 122346779944
No 388
>PRK08118 topology modulation protein; Reviewed
Probab=97.70 E-value=3.5e-05 Score=54.88 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999754
No 389
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.69 E-value=0.00019 Score=55.24 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=55.7
Q ss_pred hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCC
Q psy17231 76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGE 142 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~ 142 (189)
....+..+|++++|.|+.++.+.+. .++.... .++|+|+|.||+|+... ..+++.+||+++.
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~ 89 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGK 89 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 3566778999999999977643221 1121222 26899999999997321 1257889999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy17231 143 GVEEMFADIGRQLILS 158 (189)
Q Consensus 143 ~i~~~~~~i~~~i~~~ 158 (189)
|++++.+.+.+.+.+.
T Consensus 90 gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 90 GVKKIIKAAKKLLKEK 105 (276)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999887776543
No 390
>PRK07261 topology modulation protein; Provisional
Probab=97.69 E-value=3.7e-05 Score=54.92 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+|+|+|++|+|||||.+.+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998743
No 391
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.68 E-value=8.2e-05 Score=51.34 Aligned_cols=64 Identities=13% Similarity=0.004 Sum_probs=45.7
Q ss_pred HHHhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhCCCCcEEEEeecccccc-------------cCCceEEeeccCC
Q psy17231 77 SSYYKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNNEQCHN-------------LISSTYKTSCKTG 141 (189)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-------------~~~~~~~~Sa~~~ 141 (189)
...+..+|++++|+|+.++.+.. .+..|+... ..++|+++|+||+|+.. ....++.+||+++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~ 82 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKE 82 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 35677899999999998876433 445555433 14799999999988632 1236789999987
Q ss_pred CC
Q psy17231 142 EG 143 (189)
Q Consensus 142 ~~ 143 (189)
.+
T Consensus 83 ~~ 84 (141)
T cd01857 83 NA 84 (141)
T ss_pred Cc
Confidence 65
No 392
>PRK01889 GTPase RsgA; Reviewed
Probab=97.67 E-value=0.00024 Score=56.64 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=55.6
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHH
Q psy17231 80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~ 146 (189)
..++|.+++|++++..-....+..++..+... ++|.++|+||+|+... ..+++.+|++++.|+++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~ 187 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGLDV 187 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccHHH
Confidence 56789999999997554555667777666665 6888999999997432 23779999999999999
Q ss_pred HHHHHH
Q psy17231 147 MFADIG 152 (189)
Q Consensus 147 ~~~~i~ 152 (189)
+..++.
T Consensus 188 L~~~L~ 193 (356)
T PRK01889 188 LAAWLS 193 (356)
T ss_pred HHHHhh
Confidence 988874
No 393
>KOG0469|consensus
Probab=97.64 E-value=0.00042 Score=56.72 Aligned_cols=139 Identities=18% Similarity=0.191 Sum_probs=86.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC------------CCCCCCCCcccceeeeeEEEEEE----------------CCe
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD------------TFISSSSRKSTLGLDNFNKEYKV----------------DDR 57 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~------------~~~~~~~~~~t~~~~~~~~~~~~----------------~~~ 57 (189)
.+.-++-++....-|||||...|..+ +|.++..-+..-++++.+.-+.. ++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 34456778999999999999999532 22222111122222333322221 233
Q ss_pred EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhCCCCcEEEEeecccccccCCceE
Q psy17231 58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLISSTY 134 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~~~~~ 134 (189)
.+-++++|.||+.+|.+...+.++..|++++|+|.-+. ++-..+.. .+.+ .+.=+++.||.|..-+ +
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQ---A~~E---RIkPvlv~NK~DRAlL--E-- 166 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQ---AIAE---RIKPVLVMNKMDRALL--E-- 166 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHH---HHHh---hccceEEeehhhHHHH--h--
Confidence 57789999999999999999999999999999997653 22222222 2222 3444578899887543 1
Q ss_pred EeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231 135 KTSCKTGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 135 ~~Sa~~~~~i~~~~~~i~~~i~~~~ 159 (189)
...+-+++++.+.+.+...+
T Consensus 167 -----Lq~~~EeLyqtf~R~VE~vN 186 (842)
T KOG0469|consen 167 -----LQLSQEELYQTFQRIVENVN 186 (842)
T ss_pred -----hcCCHHHHHHHHHHHHhccc
Confidence 12355777877777665554
No 394
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.00031 Score=63.19 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=74.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCC--C--CcccceeeeeEEEEEECCeEEEEEEEeCCCccc--------cccchHH
Q psy17231 11 VILCGEYGVGKSSLFRRYAYDTFISSS--S--RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER--------VASITSS 78 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~~~~~~~--~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 78 (189)
.+|+|++|+||||++..--. .|+... . .....+ +..+. ..+.+ +-.++||.|-.. -...|..
T Consensus 128 y~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~g-T~~cd-wwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPG-TRNCD-WWFTD---EAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhcccc-cCcchhhhccccccCCC-CcccC-ccccc---ceEEEcCCcceecccCcchhhHHHHHH
Confidence 47999999999998875422 221111 0 011111 11111 22222 457999998431 1123332
Q ss_pred H---------hcCCcEEEEEEeCCCh-----hhH----HHHHHHHHHHHHhC-CCCcEEEEeecccccccCCce------
Q psy17231 79 Y---------YKFAEAAILVFSLDNA-----ASF----HVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNLISST------ 133 (189)
Q Consensus 79 ~---------~~~~~~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~~~~~------ 133 (189)
+ .+..+++|+..|+++- .-- ..++.=+.++.... -..|+.|++||.|+......|
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~ 281 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNK 281 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhccCH
Confidence 2 3356899999997532 111 11222233333333 579999999998876543322
Q ss_pred ----------EEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231 134 ----------YKTSCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 134 ----------~~~Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
|...+....+....+++-.+.+...
T Consensus 282 ~~r~qvwG~tf~~~~~~~~~~~~~~~~e~~~L~~r 316 (1188)
T COG3523 282 EEREQVWGVTFPLDARRNANLAAELEQEFRLLLDR 316 (1188)
T ss_pred HHHhhhceeccccccccccchHHHHHHHHHHHHHH
Confidence 4455666645555554444444433
No 395
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.62 E-value=0.00033 Score=40.17 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=30.2
Q ss_pred CCcEEEEEEeCCChh--hHHHHHHHHHHHHHhCCCCcEEEEeeccc
Q psy17231 82 FAEAAILVFSLDNAA--SFHVLSQHLLEIVTYAENAKIFLCGNNEQ 125 (189)
Q Consensus 82 ~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~d 125 (189)
-.+++++++|++... +.++-...+..++....++|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 457999999998765 45566677778888878999999999987
No 396
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.61 E-value=7.3e-05 Score=54.76 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTF 33 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~ 33 (189)
.-.++|+||+|||||||++.+..-+-
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 35789999999999999999986553
No 397
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.58 E-value=6e-05 Score=51.85 Aligned_cols=20 Identities=55% Similarity=0.901 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy17231 11 VILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~ 30 (189)
|+++|++|||||||++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999973
No 398
>KOG3859|consensus
Probab=97.57 E-value=0.00024 Score=53.98 Aligned_cols=62 Identities=24% Similarity=0.340 Sum_probs=43.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSS--RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 69 (189)
.++|+.+|..|.|||||+..|.+..+..... ..+++.....++...-.+...++.+.||.|.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 5899999999999999999999887754322 1233333333333333566788999999985
No 399
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.0006 Score=56.66 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.-.|+|+|++|+||||++.+|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999864
No 400
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.56 E-value=0.00062 Score=46.87 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=62.1
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEe
Q psy17231 12 ILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFS 91 (189)
Q Consensus 12 ~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 91 (189)
+.-|.+|+||||+.-.+...-.. .. ..+.-++.... .....+.+.++|+|+.. .......+..+|.++++.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~-~~--~~~~~vd~D~~---~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~ 75 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK-LG--KRVLLLDADLG---LANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTT 75 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH-CC--CcEEEEECCCC---CCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcC
Confidence 45678999999998877532110 00 11111111100 00111678999999743 3334577889999999888
Q ss_pred CCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231 92 LDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC 126 (189)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~ 126 (189)
.+ ..++......++.+.......++.+|.|+.+.
T Consensus 76 ~~-~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 76 PE-PTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CC-hhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 75 44455554555555444345677789998753
No 401
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.55 E-value=0.00038 Score=53.95 Aligned_cols=78 Identities=17% Similarity=0.156 Sum_probs=55.9
Q ss_pred hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCC
Q psy17231 76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGE 142 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~ 142 (189)
....+..+|++++|+|+.++.+.+. .++.... .+.|+++|.||+|+... ..+++.+||+++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~ 92 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQ 92 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 3566778999999999977643221 1222222 26899999999997421 1257889999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy17231 143 GVEEMFADIGRQLILS 158 (189)
Q Consensus 143 ~i~~~~~~i~~~i~~~ 158 (189)
|++++.+.+...+.+.
T Consensus 93 gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 93 GVKKILKAAKKLLKEK 108 (287)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999887776543
No 402
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.55 E-value=0.00091 Score=43.43 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=50.0
Q ss_pred EEEEc-CCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231 11 VILCG-EYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89 (189)
Q Consensus 11 i~i~G-~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (189)
|.+.| ..|+||||+...+...-.. .. .+..-.+ .+. .+.+.++|+|+... ......+..+|.++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~--~~vl~~d-------~d~-~~d~viiD~p~~~~--~~~~~~l~~ad~viv~ 68 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RG--KRVLLID-------LDP-QYDYIIIDTPPSLG--LLTRNALAAADLVLIP 68 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CC--CcEEEEe-------CCC-CCCEEEEeCcCCCC--HHHHHHHHHCCEEEEe
Confidence 45666 5689999998888533221 11 1121111 111 15789999998542 2334777889999988
Q ss_pred EeCCChhhHHHHHHHHH
Q psy17231 90 FSLDNAASFHVLSQHLL 106 (189)
Q Consensus 90 ~d~~~~~s~~~~~~~~~ 106 (189)
.+. +..++..+..++.
T Consensus 69 ~~~-~~~s~~~~~~~~~ 84 (104)
T cd02042 69 VQP-SPLDLDGLEKLLE 84 (104)
T ss_pred ccC-CHHHHHHHHHHHH
Confidence 876 4555666666555
No 403
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.54 E-value=6.7e-05 Score=56.03 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
--+.++|++|||||||+|-+.+-.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999997544
No 404
>KOG2484|consensus
Probab=97.54 E-value=9.4e-05 Score=58.55 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=43.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME 70 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 70 (189)
...+++.|+|-|++||||+||+|.....+.. ..+.|++.....++.+. .+.|.|.||..
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v---g~~pGvT~smqeV~Ldk---~i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV---GNVPGVTRSMQEVKLDK---KIRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccC---CCCccchhhhhheeccC---CceeccCCcee
Confidence 4568999999999999999999998877544 33344454444444443 57899999964
No 405
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00025 Score=51.97 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
--..++||+|||||||++.|....
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhhc
Confidence 345699999999999999997543
No 406
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.53 E-value=0.0011 Score=47.63 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
.-.+.++|+.|+|||||++.+.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4578899999999999999998654
No 407
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.52 E-value=0.0015 Score=52.60 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~ 29 (189)
.+=|.++||..+|||||+.||.
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred ceEEEeecCcccCchhHHHHHH
Confidence 3557899999999999999994
No 408
>KOG1533|consensus
Probab=97.52 E-value=3.2e-05 Score=57.17 Aligned_cols=68 Identities=9% Similarity=0.026 Sum_probs=38.2
Q ss_pred EEEEEEeCCCccccccch------HHHhcCCc---EEEEEEeC---CChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccc
Q psy17231 59 IQMQLWDTGGMERVASIT------SSYYKFAE---AAILVFSL---DNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQ 125 (189)
Q Consensus 59 ~~~~i~D~~g~~~~~~~~------~~~~~~~~---~~i~v~d~---~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d 125 (189)
..+.++|+|||.++-..+ ...++..+ +++-..|. +++..|-.. -.-+..+... ..|-+=|..|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~m--elphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHM--ELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhh--cccchhhhhHhH
Confidence 357899999998754322 11222233 33334443 567665333 2233333333 688899999988
Q ss_pred ccc
Q psy17231 126 CHN 128 (189)
Q Consensus 126 ~~~ 128 (189)
+..
T Consensus 175 l~~ 177 (290)
T KOG1533|consen 175 LLK 177 (290)
T ss_pred HHH
Confidence 654
No 409
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.52 E-value=0.00013 Score=53.80 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=24.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
|..++..|.|.|++|||||||++.|...
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457889999999999999999999754
No 410
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.51 E-value=0.00052 Score=52.96 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
+..+++|+|++|.|||+++++|....
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHC
Confidence 34679999999999999999998654
No 411
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.51 E-value=0.0004 Score=55.55 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=59.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-------------------------------C
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-------------------------------D 56 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------------------------~ 56 (189)
.-.|+++||.||||||-+-+|...-..... ...++ -....++.+. -
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~--~~kVa-iITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK--KKKVA-IITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc--CcceE-EEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 456789999999999999988633220000 11111 1111111111 1
Q ss_pred eEEEEEEEeCCCccccccch----HHHhcCC--cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcE-EEEeecccc
Q psy17231 57 RSIQMQLWDTGGMERVASIT----SSYYKFA--EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNNEQC 126 (189)
Q Consensus 57 ~~~~~~i~D~~g~~~~~~~~----~~~~~~~--~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~d~ 126 (189)
..+.+.++||.|...++... ..++... .-..+|++++... +.+...+..+.. .|+ =+++||.|-
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~----~~i~~~I~TKlDE 350 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSL----FPIDGLIFTKLDE 350 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhcc----CCcceeEEEcccc
Confidence 23578999999987655422 3333332 2355667766553 345554444443 333 378899774
No 412
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.50 E-value=0.0011 Score=53.56 Aligned_cols=102 Identities=23% Similarity=0.241 Sum_probs=68.1
Q ss_pred EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhC--CCCcEEEEeeccc
Q psy17231 58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQ 125 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d 125 (189)
...+.++|++|+..-+.-|..++.+++++++|+++++- ..+.+.-.....+.... .+.|+||++||.|
T Consensus 235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D 314 (389)
T PF00503_consen 235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID 314 (389)
T ss_dssp TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence 35789999999988888999999999999999997632 22333334444444432 6899999999987
Q ss_pred cccc-------CCceEEeeccCC---CCHHHHHHHHHHHHHHhhhh
Q psy17231 126 CHNL-------ISSTYKTSCKTG---EGVEEMFADIGRQLILSNRS 161 (189)
Q Consensus 126 ~~~~-------~~~~~~~Sa~~~---~~i~~~~~~i~~~i~~~~~~ 161 (189)
+... ...|| ...+| .+.+++.+.+.+.+.+....
T Consensus 315 ~f~~Kl~~~~~l~~~f--p~y~g~~~~~~~~~~~~i~~~f~~~~~~ 358 (389)
T PF00503_consen 315 LFEEKLKKGPKLSKYF--PDYTGDRPNDVDSAIKFIKNKFLRLNRN 358 (389)
T ss_dssp HHHHHTTTSSCGGGTS--TTGGSH-TSSHHHHHHHHHHHHHCTHST
T ss_pred HHHHHccCCCchHhhC--CCCCCCcccCHHHHHHHHHHHHHHhccC
Confidence 5431 11111 12224 47788888888777765543
No 413
>PRK14530 adenylate kinase; Provisional
Probab=97.50 E-value=0.00011 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..+|+|+|+|||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999963
No 414
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.49 E-value=0.00012 Score=44.04 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy17231 11 VILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~ 31 (189)
|.+.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999854
No 415
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.49 E-value=6.9e-05 Score=52.98 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999855
No 416
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.49 E-value=0.0023 Score=40.41 Aligned_cols=70 Identities=23% Similarity=0.205 Sum_probs=44.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc-hHHHhcCCcEEEEE
Q psy17231 11 VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI-TSSYYKFAEAAILV 89 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v 89 (189)
+++.|.+|+||||+...+...-.... ... ...+ .+.++|+++....... .......++.++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g---~~v---------~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v 65 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG---KRV---------LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIV 65 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeE---------EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEe
Confidence 67889999999999999874432111 111 1111 6789999976432221 14566678888888
Q ss_pred EeCCChh
Q psy17231 90 FSLDNAA 96 (189)
Q Consensus 90 ~d~~~~~ 96 (189)
.+.+...
T Consensus 66 ~~~~~~~ 72 (99)
T cd01983 66 TTPEALA 72 (99)
T ss_pred cCCchhh
Confidence 8875443
No 417
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.46 E-value=0.00012 Score=49.38 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy17231 11 VILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~ 31 (189)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999854
No 418
>PRK06217 hypothetical protein; Validated
Probab=97.45 E-value=0.00013 Score=52.67 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999854
No 419
>KOG0463|consensus
Probab=97.44 E-value=0.00034 Score=55.29 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
....++.++|...+|||||+-.|..+
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHg 156 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHG 156 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeec
Confidence 44789999999999999999877433
No 420
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.43 E-value=0.00016 Score=42.37 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTF 33 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~ 33 (189)
..+|.|+.|+|||||+.++..--+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 488999999999999999875444
No 421
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.43 E-value=0.00026 Score=52.13 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+..-|+|+|++|||||||+++|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45667889999999999999999754
No 422
>PRK03839 putative kinase; Provisional
Probab=97.42 E-value=0.00014 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+|+++|++||||||+.++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999654
No 423
>PRK07429 phosphoribulokinase; Provisional
Probab=97.42 E-value=0.0002 Score=56.33 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=27.7
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
|+++..+++.|.|.|++|||||||++.+...
T Consensus 1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~l 31 (327)
T PRK07429 1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLADL 31 (327)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHhH
Confidence 7788888999999999999999999999743
No 424
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.41 E-value=0.00017 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTF 33 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~ 33 (189)
-+.|+||+|||||||++-+..-.-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 578999999999999999976543
No 425
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.41 E-value=0.00019 Score=51.19 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
..-+.|+|++|||||||++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346789999999999999999854
No 426
>PRK08233 hypothetical protein; Provisional
Probab=97.41 E-value=0.00018 Score=51.61 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+.+-|.|.|++|||||||.++|...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 4567889999999999999999753
No 427
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.41 E-value=0.00017 Score=48.64 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTF 33 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~ 33 (189)
...++++|++|+||||+++.+...-.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 35789999999999999999986554
No 428
>KOG2485|consensus
Probab=97.38 E-value=0.00027 Score=54.37 Aligned_cols=63 Identities=24% Similarity=0.300 Sum_probs=37.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCcccceeeeeEE-EEEECCeEEEEEEEeCCCc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFI--SSSSRKSTLGLDNFNK-EYKVDDRSIQMQLWDTGGM 69 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~--~~~~~~~t~~~~~~~~-~~~~~~~~~~~~i~D~~g~ 69 (189)
..++++.|+|.||+|||||+|++.....- .........|.+.... .+.+.... .+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 35789999999999999999998533211 1111122223233222 23333322 3688999994
No 429
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.37 E-value=0.00022 Score=52.29 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
..+...|+|+|++|||||||++.|...
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345567999999999999999999764
No 430
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.00019 Score=56.42 Aligned_cols=24 Identities=42% Similarity=0.400 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTF 33 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~ 33 (189)
-++++||+|||||||++.+.+-.-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999986543
No 431
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.36 E-value=0.00032 Score=50.82 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+..-|+|+||+|||||||+++|...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456889999999999999999754
No 432
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.36 E-value=0.00019 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
||+|.|++|+|||||++++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998743
No 433
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.36 E-value=0.00017 Score=49.22 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
.-.++|+|+.|+|||||++.+.+..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 3478999999999999999888553
No 434
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.35 E-value=0.0002 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.+++|+|+|+|||||||+.++|..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
No 435
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.35 E-value=0.00019 Score=51.97 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.++|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999999654
No 436
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.35 E-value=0.00027 Score=52.04 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=22.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+.+..-|.|+|++|+|||||++.+.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 345577889999999999999999753
No 437
>KOG3347|consensus
Probab=97.34 E-value=0.00017 Score=49.72 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=23.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+....+|+|.|.||+|||||..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 35678999999999999999999973
No 438
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.34 E-value=0.00019 Score=49.31 Aligned_cols=21 Identities=43% Similarity=0.797 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy17231 11 VILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~ 31 (189)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999854
No 439
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.34 E-value=0.0023 Score=41.86 Aligned_cols=99 Identities=19% Similarity=0.105 Sum_probs=58.0
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCC
Q psy17231 14 CGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLD 93 (189)
Q Consensus 14 ~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 93 (189)
=+..|+||||+...|...-..... ..+.-.+.... . ...+.++|+|+... ......+..+|.++++.+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~--~~~~l~d~d~~---~---~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~- 74 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAG--RRVLLVDLDLQ---F---GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQ- 74 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCC--CcEEEEECCCC---C---CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecC-
Confidence 356789999988877533221101 11111111111 0 11679999998543 2334567888988888875
Q ss_pred ChhhHHHHHHHHHHHHHhC-C-CCcEEEEeec
Q psy17231 94 NAASFHVLSQHLLEIVTYA-E-NAKIFLCGNN 123 (189)
Q Consensus 94 ~~~s~~~~~~~~~~~~~~~-~-~~p~ivv~nK 123 (189)
+..+...+..+++.+.+.. + ...+.+|+|+
T Consensus 75 ~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 75 DLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred ChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4555667777777666654 2 3566677775
No 440
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.33 E-value=0.00019 Score=48.20 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy17231 11 VILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~ 31 (189)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999754
No 441
>PRK14532 adenylate kinase; Provisional
Probab=97.32 E-value=0.00021 Score=51.73 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++|+++|+|||||||+.++|..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999974
No 442
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.31 E-value=0.00021 Score=51.20 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998754
No 443
>KOG3354|consensus
Probab=97.30 E-value=0.003 Score=43.99 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+...+..|+++|.+|+||||+...|..
T Consensus 8 ~~~~k~~i~vmGvsGsGKSTigk~L~~ 34 (191)
T KOG3354|consen 8 MGPFKYVIVVMGVSGSGKSTIGKALSE 34 (191)
T ss_pred cCCCceeEEEEecCCCChhhHHHHHHH
Confidence 445567799999999999999998853
No 444
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0003 Score=56.16 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~ 29 (189)
.-.++++|++||||||++.++.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999995
No 445
>PRK14531 adenylate kinase; Provisional
Probab=97.28 E-value=0.00026 Score=51.12 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+.+|+++|+|||||||+.+++...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999643
No 446
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.27 E-value=0.00027 Score=48.46 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999743
No 447
>KOG2423|consensus
Probab=97.27 E-value=0.00041 Score=55.15 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=54.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc--cchHHHhcC
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA--SITSSYYKF 82 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~ 82 (189)
+.+.+.|.++|.||+||||+||.|-..+++...+.... +-....+.+ .-++-++|+||...-. +.....+
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGE---TKVWQYItL---mkrIfLIDcPGvVyps~dset~ivL-- 375 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGE---TKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIVL-- 375 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCc---chHHHHHHH---HhceeEecCCCccCCCCCchHHHHh--
Confidence 46789999999999999999999998887665432221 111101111 2367899999964222 2223333
Q ss_pred CcEEEEEEeCCChhhH
Q psy17231 83 AEAAILVFSLDNAASF 98 (189)
Q Consensus 83 ~~~~i~v~d~~~~~s~ 98 (189)
.+++=|=.+.+++.+
T Consensus 376 -kGvVRVenv~~pe~y 390 (572)
T KOG2423|consen 376 -KGVVRVENVKNPEDY 390 (572)
T ss_pred -hceeeeeecCCHHHH
Confidence 456777778887643
No 448
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.27 E-value=0.00023 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
--++++|++|||||||+|-+.+-
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcC
Confidence 35889999999999999988743
No 449
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.27 E-value=0.00029 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.|.|+|+.|+|||||+++|.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999754
No 450
>PLN02674 adenylate kinase
Probab=97.25 E-value=0.00027 Score=53.25 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.+..+|+++|+|||||+|+.++|..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 4468899999999999999999964
No 451
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.24 E-value=0.00027 Score=46.28 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy17231 9 QKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~ 29 (189)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 568999999999999999986
No 452
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.23 E-value=0.00028 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5789999999999999999864
No 453
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.23 E-value=0.00027 Score=50.88 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..|+++|++||||||+++++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999973
No 454
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.23 E-value=0.00033 Score=52.59 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
..+++++|+|++|||||+|+..+...
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999999743
No 455
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00034 Score=55.30 Aligned_cols=25 Identities=36% Similarity=0.301 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFI 34 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~ 34 (189)
-+.++||+||||||+++.+.+-..+
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p 57 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQP 57 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999865543
No 456
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.21 E-value=0.00028 Score=53.40 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
--++|+||.|||||||++.+.+-
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 45679999999999999999753
No 457
>PRK13949 shikimate kinase; Provisional
Probab=97.21 E-value=0.00035 Score=49.79 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+|+|+|++|+||||+.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998743
No 458
>PRK02496 adk adenylate kinase; Provisional
Probab=97.21 E-value=0.00036 Score=50.34 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++++|+|++|+||||+.+.|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
No 459
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.19 E-value=0.0067 Score=46.99 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
-.|+|.|++||||||+++.|..
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~~ 28 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALED 28 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3688999999999999999963
No 460
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.18 E-value=0.00037 Score=50.06 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~ 29 (189)
.-.+.++|++|+|||||++.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999886
No 461
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.00034 Score=49.44 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy17231 9 QKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~ 29 (189)
++|+|.|.||+||||+.++|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 479999999999999999997
No 462
>PRK00625 shikimate kinase; Provisional
Probab=97.17 E-value=0.0004 Score=49.72 Aligned_cols=23 Identities=35% Similarity=0.454 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
++|+++|.+||||||+.+.+...
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999643
No 463
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.17 E-value=0.00036 Score=50.92 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy17231 11 VILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~ 31 (189)
|.|.|++|||||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999764
No 464
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.16 E-value=0.00056 Score=48.92 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..+..-|++.|++|+||||+.+.+..
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~ 29 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYE 29 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999999864
No 465
>PRK06547 hypothetical protein; Provisional
Probab=97.16 E-value=0.00052 Score=49.10 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+...|+|.|++|||||||.+.|...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55678889999999999999999754
No 466
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.15 E-value=0.00048 Score=49.23 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
..+|+++|++|+|||||.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 457999999999999999999754
No 467
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.15 E-value=0.00036 Score=50.52 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+|+|+|++||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 468
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.13 E-value=0.00045 Score=49.51 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTF 33 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~ 33 (189)
-.+.|+|++|+|||||+|-+.+=..
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC
Confidence 4688999999999999999975443
No 469
>PRK01889 GTPase RsgA; Reviewed
Probab=97.13 E-value=0.00057 Score=54.55 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-+++++|.+|+|||||+|.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 478999999999999999998654
No 470
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.13 E-value=0.00041 Score=49.86 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy17231 11 VILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~ 30 (189)
|+++|+|||||||+.++|..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
No 471
>PLN02200 adenylate kinase family protein
Probab=97.12 E-value=0.00054 Score=51.46 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.++.|+|+|+|||||||+.++|..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357789999999999999999963
No 472
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.10 E-value=0.00093 Score=45.59 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
+...|++.|+.|+|||||++.+...-
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999998664
No 473
>PRK08356 hypothetical protein; Provisional
Probab=97.10 E-value=0.00064 Score=49.57 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+.+.|+++|++||||||+.++|..
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999964
No 474
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.09 E-value=0.00053 Score=49.63 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.-.++++|++|+|||||++.+.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999999998854
No 475
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.08 E-value=0.00044 Score=51.01 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy17231 10 KVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~ 30 (189)
||+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 476
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.08 E-value=0.00051 Score=50.28 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy17231 11 VILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~~ 32 (189)
|+|.|++|+||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987543
No 477
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.08 E-value=0.00042 Score=48.92 Aligned_cols=21 Identities=33% Similarity=0.437 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy17231 11 VILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~ 31 (189)
|+++|++||||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999854
No 478
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.00048 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
--|+|+|++|+|||||++.+.+
T Consensus 31 E~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhc
Confidence 3588999999999999999986
No 479
>PTZ00301 uridine kinase; Provisional
Probab=97.07 E-value=0.00067 Score=50.08 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=20.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~ 29 (189)
|+.+-|.|.|++|||||||.+++.
T Consensus 1 ~~~~iIgIaG~SgSGKTTla~~l~ 24 (210)
T PTZ00301 1 MPCTVIGISGASGSGKSSLSTNIV 24 (210)
T ss_pred CCCEEEEEECCCcCCHHHHHHHHH
Confidence 345678899999999999998875
No 480
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.07 E-value=0.0006 Score=46.37 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
...+++.|++|+|||+|++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998554
No 481
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.06 E-value=0.00053 Score=50.74 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|+.|+|||||++.+.+..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 468899999999999999998653
No 482
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.06 E-value=0.00055 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++|+|+|+|||||||+.+.|..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 483
>PRK04040 adenylate kinase; Provisional
Probab=97.06 E-value=0.00066 Score=49.28 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
...|+|.|.+||||||+++.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 357899999999999999999654
No 484
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.05 E-value=0.00055 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.++|.|++|+|||++++++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999854
No 485
>PRK04195 replication factor C large subunit; Provisional
Probab=97.05 E-value=0.0071 Score=50.36 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
...++|.|++|+||||+++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999754
No 486
>PRK14529 adenylate kinase; Provisional
Probab=97.05 E-value=0.00058 Score=50.85 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++|+++|+|||||||+.++|..
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 487
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.00061 Score=48.83 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
...-+++.||+|+|||||+++|....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34567899999999999999998654
No 488
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.03 E-value=0.00056 Score=48.95 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=16.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~ 29 (189)
...-.++|.|++|+|||+|++++.
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345678999999999999999885
No 489
>PHA00729 NTP-binding motif containing protein
Probab=97.02 E-value=0.00073 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+|+|.|+||+|||+|..++...
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999754
No 490
>PRK14526 adenylate kinase; Provisional
Probab=97.02 E-value=0.00066 Score=50.17 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++|+++|++||||||+.+.|..
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999863
No 491
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.02 E-value=0.00063 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|+.|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478899999999999999998653
No 492
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.01 E-value=0.00063 Score=50.31 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|++|+|||||++.+.+..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998653
No 493
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.01 E-value=0.00066 Score=49.99 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|+.|+|||||++.+.+..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999998653
No 494
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.99 E-value=0.00069 Score=49.09 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|+.|+|||||++.+.+..
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998653
No 495
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.00068 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|+.|+|||||++.+.+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998653
No 496
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.99 E-value=0.0007 Score=49.93 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.+.|+|++|+|||||++.+.+.
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999865
No 497
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.99 E-value=0.00064 Score=50.60 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy17231 11 VILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~ 31 (189)
|.|.|++|||||||++.|...
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 579999999999999999753
No 498
>PLN02459 probable adenylate kinase
Probab=96.99 E-value=0.00094 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.+++|+++|+||+||||+...+..
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~ 51 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSK 51 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
No 499
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.00064 Score=50.07 Aligned_cols=22 Identities=36% Similarity=0.366 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.++|+|++|+|||||++.+.+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999864
No 500
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.97 E-value=0.00073 Score=49.86 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|+.|+|||||++.+.+..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998653
Done!