Query psy17231
Match_columns 189
No_of_seqs 132 out of 1460
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 16:42:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.8E-38 2E-42 231.4 18.1 153 6-160 11-179 (216)
2 3tw8_B RAS-related protein RAB 100.0 4.9E-33 1.7E-37 198.6 20.6 162 1-164 2-178 (181)
3 3tkl_A RAS-related protein RAB 100.0 8.7E-32 3E-36 194.8 21.7 153 6-160 14-182 (196)
4 2fu5_C RAS-related protein RAB 100.0 6.9E-33 2.4E-37 198.7 15.6 159 1-161 1-175 (183)
5 2bme_A RAB4A, RAS-related prot 100.0 6.5E-32 2.2E-36 194.0 20.0 158 1-160 3-176 (186)
6 2fn4_A P23, RAS-related protei 100.0 1.1E-31 3.9E-36 191.5 21.1 157 1-160 2-175 (181)
7 2ew1_A RAS-related protein RAB 100.0 6.5E-32 2.2E-36 197.2 20.2 152 7-160 25-192 (201)
8 1vg8_A RAS-related protein RAB 100.0 6.5E-32 2.2E-36 197.2 19.9 161 1-163 1-181 (207)
9 2bcg_Y Protein YP2, GTP-bindin 100.0 1.8E-31 6.3E-36 194.9 21.7 160 1-162 1-176 (206)
10 3kkq_A RAS-related protein M-R 100.0 2.2E-31 7.6E-36 190.8 20.9 150 5-157 15-182 (183)
11 2a5j_A RAS-related protein RAB 100.0 2.2E-31 7.5E-36 192.4 20.8 153 5-159 18-186 (191)
12 1r2q_A RAS-related protein RAB 100.0 1.5E-31 5.3E-36 188.9 19.5 150 4-155 2-167 (170)
13 1ek0_A Protein (GTP-binding pr 100.0 1.4E-31 4.8E-36 189.1 18.6 148 6-155 1-167 (170)
14 2hup_A RAS-related protein RAB 100.0 1.4E-31 4.7E-36 195.3 19.1 153 6-160 27-196 (201)
15 1ky3_A GTP-binding protein YPT 100.0 7E-32 2.4E-36 192.8 17.1 157 1-159 1-180 (182)
16 1z2a_A RAS-related protein RAB 100.0 2.3E-31 7.9E-36 187.8 19.4 150 6-157 3-167 (168)
17 2efe_B Small GTP-binding prote 100.0 3.4E-31 1.2E-35 189.3 19.3 152 5-158 9-176 (181)
18 1zbd_A Rabphilin-3A; G protein 100.0 3.9E-31 1.3E-35 192.7 19.9 155 5-161 5-175 (203)
19 2oil_A CATX-8, RAS-related pro 100.0 6.9E-31 2.4E-35 189.9 21.1 152 6-159 23-190 (193)
20 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.9E-31 1.3E-35 188.4 19.3 152 5-158 4-175 (177)
21 1z0f_A RAB14, member RAS oncog 100.0 4.5E-31 1.5E-35 188.1 19.6 150 6-157 13-178 (179)
22 2nzj_A GTP-binding protein REM 100.0 3.4E-31 1.2E-35 188.2 18.9 151 6-159 2-171 (175)
23 1z08_A RAS-related protein RAB 100.0 2.4E-31 8.2E-36 188.2 17.8 151 5-157 3-169 (170)
24 1gwn_A RHO-related GTP-binding 100.0 1.5E-31 5.2E-36 195.7 17.3 154 1-157 21-204 (205)
25 2gf9_A RAS-related protein RAB 100.0 9.8E-31 3.3E-35 188.6 21.3 150 7-158 21-186 (189)
26 3reg_A RHO-like small GTPase; 100.0 5.5E-31 1.9E-35 190.7 20.0 151 6-159 21-190 (194)
27 3q3j_B RHO-related GTP-binding 100.0 2.4E-31 8.3E-36 195.8 18.3 152 6-160 25-206 (214)
28 1x3s_A RAS-related protein RAB 100.0 3.9E-31 1.3E-35 191.1 18.9 152 6-159 13-180 (195)
29 2q3h_A RAS homolog gene family 100.0 6.6E-31 2.2E-35 191.2 20.0 153 5-160 17-198 (201)
30 1u8z_A RAS-related protein RAL 100.0 9.5E-31 3.3E-35 184.3 20.1 150 5-157 1-167 (168)
31 2hxs_A RAB-26, RAS-related pro 100.0 1.8E-31 6.2E-36 190.3 16.6 153 5-159 3-175 (178)
32 1g16_A RAS-related protein SEC 100.0 5.1E-31 1.8E-35 186.3 18.7 150 7-158 2-166 (170)
33 1z0j_A RAB-22, RAS-related pro 100.0 1.1E-30 3.9E-35 184.5 20.4 148 6-155 4-167 (170)
34 3t5g_A GTP-binding protein RHE 100.0 4.2E-31 1.4E-35 189.1 18.3 151 6-159 4-171 (181)
35 2atx_A Small GTP binding prote 100.0 4.7E-31 1.6E-35 191.0 18.8 148 7-157 17-193 (194)
36 2y8e_A RAB-protein 6, GH09086P 100.0 4.3E-31 1.5E-35 188.2 18.2 149 6-156 12-176 (179)
37 2fg5_A RAB-22B, RAS-related pr 100.0 4.4E-31 1.5E-35 191.1 18.4 150 6-157 21-186 (192)
38 2iwr_A Centaurin gamma 1; ANK 100.0 9.7E-31 3.3E-35 186.7 19.9 148 5-161 4-173 (178)
39 2il1_A RAB12; G-protein, GDP, 100.0 4.4E-31 1.5E-35 191.2 18.1 151 6-158 24-191 (192)
40 3c5c_A RAS-like protein 12; GD 100.0 1E-30 3.4E-35 188.6 19.8 149 5-157 18-186 (187)
41 3ihw_A Centg3; RAS, centaurin, 100.0 1E-30 3.4E-35 188.2 19.8 147 4-159 16-182 (184)
42 3q85_A GTP-binding protein REM 100.0 5.9E-31 2E-35 186.1 18.2 149 8-158 2-168 (169)
43 2o52_A RAS-related protein RAB 100.0 5.7E-31 1.9E-35 191.8 18.6 153 6-160 23-191 (200)
44 1c1y_A RAS-related protein RAP 100.0 5.4E-31 1.9E-35 185.7 17.9 148 6-156 1-166 (167)
45 3dz8_A RAS-related protein RAB 100.0 5E-32 1.7E-36 195.8 12.7 152 6-159 21-188 (191)
46 3bc1_A RAS-related protein RAB 100.0 1.1E-30 3.9E-35 188.3 19.7 153 6-160 9-188 (195)
47 1m7b_A RND3/RHOE small GTP-bin 100.0 5.8E-31 2E-35 189.2 17.9 151 4-157 3-183 (184)
48 2g6b_A RAS-related protein RAB 100.0 1.4E-30 4.9E-35 185.9 19.8 154 5-159 7-176 (180)
49 2gco_A H9, RHO-related GTP-bin 100.0 1.2E-30 4.2E-35 190.1 19.6 152 3-157 20-200 (201)
50 1mh1_A RAC1; GTP-binding, GTPa 100.0 8.2E-31 2.8E-35 188.0 18.4 151 5-158 2-181 (186)
51 4dsu_A GTPase KRAS, isoform 2B 100.0 3.5E-30 1.2E-34 185.1 21.6 153 6-161 2-170 (189)
52 2p5s_A RAS and EF-hand domain 100.0 4.3E-31 1.5E-35 192.1 16.9 149 6-156 26-196 (199)
53 3cbq_A GTP-binding protein REM 100.0 4.6E-31 1.6E-35 191.7 17.0 152 6-159 21-190 (195)
54 3q72_A GTP-binding protein RAD 100.0 8.9E-31 3E-35 184.7 17.9 148 7-158 1-165 (166)
55 1z06_A RAS-related protein RAB 100.0 1.1E-30 3.8E-35 188.3 18.7 150 5-156 17-187 (189)
56 2a9k_A RAS-related protein RAL 100.0 2.3E-30 7.7E-35 185.7 20.2 153 5-160 15-184 (187)
57 1kao_A RAP2A; GTP-binding prot 100.0 2.1E-30 7.1E-35 182.4 19.6 149 6-157 1-166 (167)
58 3cpj_B GTP-binding protein YPT 100.0 9.7E-31 3.3E-35 193.6 18.7 154 7-162 12-181 (223)
59 2bov_A RAla, RAS-related prote 100.0 3.2E-30 1.1E-34 187.9 21.0 152 5-159 11-179 (206)
60 3oes_A GTPase rhebl1; small GT 100.0 6E-31 2.1E-35 191.6 16.8 153 6-161 22-191 (201)
61 2j0v_A RAC-like GTP-binding pr 100.0 8E-31 2.7E-35 192.3 17.6 153 6-161 7-184 (212)
62 2f7s_A C25KG, RAS-related prot 100.0 2.2E-31 7.4E-36 196.0 14.4 156 6-163 23-205 (217)
63 2fv8_A H6, RHO-related GTP-bin 100.0 2E-30 6.7E-35 189.8 18.7 152 5-159 22-202 (207)
64 3clv_A RAB5 protein, putative; 100.0 7E-30 2.4E-34 185.4 21.5 151 6-159 5-206 (208)
65 3gj0_A GTP-binding nuclear pro 100.0 4.9E-31 1.7E-35 194.8 15.5 154 5-160 12-178 (221)
66 2g3y_A GTP-binding protein GEM 100.0 2E-30 6.8E-35 190.5 18.2 152 6-158 35-204 (211)
67 3cph_A RAS-related protein SEC 100.0 4.5E-30 1.5E-34 188.2 20.0 152 6-159 18-184 (213)
68 2j1l_A RHO-related GTP-binding 100.0 1.8E-30 6.2E-35 191.0 17.6 151 6-159 32-211 (214)
69 3t1o_A Gliding protein MGLA; G 100.0 4.2E-31 1.4E-35 191.2 14.0 154 6-160 12-195 (198)
70 2atv_A RERG, RAS-like estrogen 100.0 5.5E-30 1.9E-34 185.8 19.8 150 6-159 26-193 (196)
71 4gzl_A RAS-related C3 botulinu 100.0 1.9E-30 6.6E-35 189.6 16.8 148 5-155 27-203 (204)
72 3bwd_D RAC-like GTP-binding pr 100.0 4E-31 1.4E-35 189.1 11.9 149 5-156 5-180 (182)
73 2ce2_X GTPase HRAS; signaling 100.0 2.8E-29 9.5E-34 176.3 20.5 149 6-157 1-165 (166)
74 2cjw_A GTP-binding protein GEM 100.0 2.5E-29 8.5E-34 182.1 19.9 153 6-159 4-174 (192)
75 3con_A GTPase NRAS; structural 100.0 3.7E-29 1.3E-33 180.3 20.4 153 5-160 18-186 (190)
76 2yc2_C IFT27, small RAB-relate 100.0 7.8E-31 2.7E-35 191.3 11.6 155 6-162 18-197 (208)
77 4bas_A ADP-ribosylation factor 100.0 5E-30 1.7E-34 186.0 15.6 150 6-161 15-193 (199)
78 1upt_A ARL1, ADP-ribosylation 100.0 1.7E-29 5.7E-34 178.8 17.8 146 6-158 5-170 (171)
79 2erx_A GTP-binding protein DI- 100.0 1.1E-29 3.7E-34 179.7 16.2 147 7-156 2-166 (172)
80 1f6b_A SAR1; gtpases, N-termin 100.0 5.6E-30 1.9E-34 186.3 14.7 144 4-154 21-196 (198)
81 1m2o_B GTP-binding protein SAR 100.0 1.4E-29 4.9E-34 183.0 16.6 144 4-154 19-189 (190)
82 1zd9_A ADP-ribosylation factor 100.0 6.2E-30 2.1E-34 184.5 14.5 146 6-157 20-185 (188)
83 1fzq_A ADP-ribosylation factor 100.0 6.6E-30 2.2E-34 183.4 14.4 147 5-158 13-179 (181)
84 4djt_A GTP-binding nuclear pro 100.0 6.9E-30 2.4E-34 188.1 14.7 154 6-161 9-179 (218)
85 1r8s_A ADP-ribosylation factor 100.0 1.1E-29 3.8E-34 178.7 15.0 142 9-157 1-162 (164)
86 3l0i_B RAS-related protein RAB 100.0 1E-31 3.5E-36 195.5 4.2 150 6-157 31-196 (199)
87 2b6h_A ADP-ribosylation factor 100.0 2.5E-29 8.5E-34 182.0 16.2 145 5-156 26-190 (192)
88 1ksh_A ARF-like protein 2; sma 100.0 4E-29 1.4E-33 179.6 16.9 146 6-158 16-181 (186)
89 1zj6_A ADP-ribosylation factor 100.0 4.8E-29 1.6E-33 179.5 17.3 146 6-158 14-179 (187)
90 2gf0_A GTP-binding protein DI- 100.0 5.7E-29 2E-33 180.4 16.1 151 6-159 6-173 (199)
91 2h17_A ADP-ribosylation factor 100.0 2.9E-29 1E-33 179.8 13.5 143 5-154 18-180 (181)
92 2h57_A ADP-ribosylation factor 100.0 1.2E-28 4.3E-33 177.7 16.8 147 5-157 18-187 (190)
93 1moz_A ARL1, ADP-ribosylation 100.0 4.7E-29 1.6E-33 178.6 13.7 146 6-158 16-181 (183)
94 2zej_A Dardarin, leucine-rich 100.0 3.9E-29 1.3E-33 179.7 12.7 151 8-158 2-179 (184)
95 2x77_A ADP-ribosylation factor 100.0 6.4E-29 2.2E-33 179.0 13.7 146 6-158 20-185 (189)
96 2f9l_A RAB11B, member RAS onco 100.0 5.3E-27 1.8E-31 170.5 20.9 152 6-159 3-170 (199)
97 3llu_A RAS-related GTP-binding 100.0 2.2E-28 7.4E-33 177.5 13.5 145 5-155 17-195 (196)
98 2wkq_A NPH1-1, RAS-related C3 100.0 1.7E-27 5.8E-32 185.4 19.2 149 6-157 153-330 (332)
99 2fh5_B SR-beta, signal recogni 100.0 9.6E-28 3.3E-32 176.1 14.5 145 5-154 4-213 (214)
100 3th5_A RAS-related C3 botulinu 99.9 3.2E-30 1.1E-34 188.1 0.0 147 6-155 28-203 (204)
101 2lkc_A Translation initiation 100.0 1.7E-27 5.9E-32 169.6 14.0 149 2-160 2-174 (178)
102 3o47_A ADP-ribosylation factor 99.9 1.5E-27 5E-32 186.1 13.5 145 6-157 163-327 (329)
103 2wji_A Ferrous iron transport 99.9 9.6E-27 3.3E-31 164.4 16.3 141 6-155 1-163 (165)
104 1oix_A RAS-related protein RAB 99.9 5.6E-26 1.9E-30 164.3 20.3 147 7-155 28-190 (191)
105 3lvq_E ARF-GAP with SH3 domain 99.9 7.6E-27 2.6E-31 191.3 16.1 149 5-160 319-487 (497)
106 2gj8_A MNME, tRNA modification 99.9 1.7E-26 5.7E-31 164.4 14.6 146 7-156 3-165 (172)
107 3c5h_A Glucocorticoid receptor 99.9 3E-27 1E-31 178.3 9.6 150 5-156 16-254 (255)
108 3r7w_B Gtpase2, GTP-binding pr 99.9 9.4E-27 3.2E-31 179.6 10.3 146 10-161 1-178 (331)
109 2qu8_A Putative nucleolar GTP- 99.9 2.2E-25 7.6E-30 165.3 17.2 152 5-160 26-208 (228)
110 3r7w_A Gtpase1, GTP-binding pr 99.9 8.4E-26 2.9E-30 174.7 15.0 147 7-157 2-181 (307)
111 2wjg_A FEOB, ferrous iron tran 99.9 2.3E-25 8E-30 160.0 14.9 147 4-159 3-171 (188)
112 2dyk_A GTP-binding protein; GT 99.9 4.6E-25 1.6E-29 154.4 14.6 141 9-155 2-160 (161)
113 2cxx_A Probable GTP-binding pr 99.9 8.5E-26 2.9E-30 162.4 9.4 145 9-161 2-188 (190)
114 1svi_A GTP-binding protein YSX 99.9 4E-25 1.4E-29 159.7 12.5 143 6-156 21-194 (195)
115 3a1s_A Iron(II) transport prot 99.9 5.6E-24 1.9E-28 160.7 15.9 142 6-156 3-166 (258)
116 3dpu_A RAB family protein; roc 99.9 3.2E-25 1.1E-29 183.1 8.5 149 5-158 38-209 (535)
117 3pqc_A Probable GTP-binding pr 99.9 5.8E-24 2E-28 153.2 13.9 140 6-156 21-193 (195)
118 3iby_A Ferrous iron transport 99.9 4.2E-24 1.4E-28 161.2 12.6 137 9-154 2-164 (256)
119 3i8s_A Ferrous iron transport 99.9 6.5E-24 2.2E-28 161.7 12.6 142 6-156 1-168 (274)
120 3iev_A GTP-binding protein ERA 99.9 1.4E-23 4.9E-28 162.3 14.6 149 5-157 7-182 (308)
121 3b1v_A Ferrous iron uptake tra 99.9 1.5E-23 5.1E-28 159.4 13.5 140 7-156 2-163 (272)
122 3k53_A Ferrous iron transport 99.9 2.9E-23 1E-27 157.8 15.0 145 6-158 1-167 (271)
123 1wf3_A GTP-binding protein; GT 99.9 7.2E-24 2.5E-28 163.3 11.2 150 1-156 1-172 (301)
124 4dhe_A Probable GTP-binding pr 99.9 9.5E-24 3.3E-28 155.6 10.5 148 6-158 27-212 (223)
125 3gee_A MNME, tRNA modification 99.9 5.2E-23 1.8E-27 167.1 12.8 145 8-156 233-397 (476)
126 1nrj_B SR-beta, signal recogni 99.9 2.8E-23 9.6E-28 152.6 7.8 115 5-128 9-134 (218)
127 2e87_A Hypothetical protein PH 99.9 2.3E-21 7.9E-26 152.7 18.6 150 6-159 165-338 (357)
128 2hjg_A GTP-binding protein ENG 99.9 1.6E-22 5.4E-27 163.2 11.9 147 7-159 174-351 (436)
129 2hjg_A GTP-binding protein ENG 99.9 1.5E-22 5.1E-27 163.4 9.2 144 8-157 3-165 (436)
130 1mky_A Probable GTP-binding pr 99.9 2.2E-21 7.6E-26 156.7 15.5 141 9-157 2-166 (439)
131 3sjy_A Translation initiation 99.9 7.6E-21 2.6E-25 152.0 17.6 152 5-157 5-192 (403)
132 1xzp_A Probable tRNA modificat 99.9 7.6E-22 2.6E-26 160.4 11.9 142 8-157 243-405 (482)
133 4dcu_A GTP-binding protein ENG 99.9 1.1E-21 3.9E-26 159.1 12.5 149 6-160 193-372 (456)
134 3geh_A MNME, tRNA modification 99.9 1.4E-21 5E-26 158.1 12.2 143 8-158 224-385 (462)
135 2ged_A SR-beta, signal recogni 99.9 2.6E-21 8.9E-26 139.4 11.8 130 6-156 46-186 (193)
136 1lnz_A SPO0B-associated GTP-bi 99.9 5E-22 1.7E-26 155.2 8.5 147 9-158 159-331 (342)
137 2xtp_A GTPase IMAP family memb 99.9 6.5E-21 2.2E-25 143.9 14.3 151 6-159 20-210 (260)
138 3qq5_A Small GTP-binding prote 99.9 5.1E-22 1.7E-26 159.0 7.8 145 6-157 32-196 (423)
139 3cb4_D GTP-binding protein LEP 99.9 3.2E-21 1.1E-25 160.2 12.1 148 7-157 3-182 (599)
140 4dcu_A GTP-binding protein ENG 99.9 8.8E-22 3E-26 159.7 7.7 146 5-156 20-184 (456)
141 1cip_A Protein (guanine nucleo 99.8 9.4E-21 3.2E-25 148.6 12.8 102 58-159 192-346 (353)
142 2ywe_A GTP-binding protein LEP 99.8 9.1E-21 3.1E-25 157.3 13.4 148 7-157 5-184 (600)
143 1wb1_A Translation elongation 99.8 1.1E-20 3.6E-25 154.1 13.2 144 3-156 14-188 (482)
144 1g7s_A Translation initiation 99.8 5E-21 1.7E-25 159.1 11.3 147 5-157 2-218 (594)
145 2qtf_A Protein HFLX, GTP-bindi 99.8 5.1E-20 1.7E-24 145.1 16.6 148 8-160 178-357 (364)
146 3izy_P Translation initiation 99.8 3E-22 1E-26 164.2 1.7 144 7-156 3-167 (537)
147 1mky_A Probable GTP-binding pr 99.8 7.6E-20 2.6E-24 147.7 15.6 146 7-158 179-356 (439)
148 3p26_A Elongation factor 1 alp 99.8 1.4E-20 4.7E-25 153.7 11.2 142 6-147 31-228 (483)
149 1s0u_A EIF-2-gamma, translatio 99.8 9.8E-20 3.4E-24 145.8 15.6 147 5-156 5-197 (408)
150 3j2k_7 ERF3, eukaryotic polype 99.8 7E-20 2.4E-24 147.8 13.7 141 5-149 14-217 (439)
151 3tr5_A RF-3, peptide chain rel 99.8 6.1E-21 2.1E-25 156.8 7.4 116 7-127 12-147 (528)
152 3ohm_A Guanine nucleotide-bind 99.8 1.1E-19 3.6E-24 140.9 13.8 103 58-160 166-321 (327)
153 1kk1_A EIF2gamma; initiation o 99.8 2.2E-19 7.7E-24 143.8 15.7 146 6-156 8-199 (410)
154 3lxx_A GTPase IMAP family memb 99.8 1.8E-19 6.1E-24 134.4 14.2 150 6-158 27-215 (239)
155 3lxw_A GTPase IMAP family memb 99.8 1.3E-19 4.5E-24 135.9 13.2 152 5-158 18-209 (247)
156 1ega_A Protein (GTP-binding pr 99.8 3.7E-20 1.3E-24 142.7 10.4 145 5-156 5-174 (301)
157 2xtz_A Guanine nucleotide-bind 99.8 1.5E-19 5E-24 141.8 13.4 103 57-159 181-347 (354)
158 4fid_A G protein alpha subunit 99.8 8.1E-20 2.8E-24 142.0 11.7 100 58-157 160-328 (340)
159 2c78_A Elongation factor TU-A; 99.8 3.3E-20 1.1E-24 148.4 9.0 136 5-143 8-180 (405)
160 3t5d_A Septin-7; GTP-binding p 99.8 3.7E-20 1.3E-24 140.9 8.8 147 6-155 6-202 (274)
161 1zo1_I IF2, translation initia 99.8 9.3E-21 3.2E-25 154.3 5.2 138 6-153 2-163 (501)
162 1jny_A EF-1-alpha, elongation 99.8 4.4E-21 1.5E-25 154.8 1.4 140 5-149 3-205 (435)
163 1d2e_A Elongation factor TU (E 99.8 1.1E-19 3.6E-24 145.1 8.9 147 7-156 2-194 (397)
164 2elf_A Protein translation elo 99.8 3.2E-19 1.1E-23 140.9 11.4 132 10-158 23-181 (370)
165 2qag_A Septin-2, protein NEDD5 99.8 5.9E-20 2E-24 144.8 6.5 149 7-159 36-235 (361)
166 2aka_B Dynamin-1; fusion prote 99.8 2.4E-19 8.3E-24 137.6 9.2 147 6-154 24-250 (299)
167 1zun_B Sulfate adenylate trans 99.8 3.5E-19 1.2E-23 143.6 10.1 142 6-149 22-216 (434)
168 3def_A T7I23.11 protein; chlor 99.8 2.7E-18 9.2E-23 129.8 13.6 120 5-128 33-165 (262)
169 2j69_A Bacterial dynamin-like 99.8 3.3E-18 1.1E-22 144.8 14.4 151 7-159 68-327 (695)
170 1f60_A Elongation factor EEF1A 99.8 1.3E-19 4.4E-24 147.0 4.6 137 5-147 4-202 (458)
171 1r5b_A Eukaryotic peptide chai 99.8 1.3E-19 4.5E-24 147.2 4.6 139 6-148 41-243 (467)
172 3avx_A Elongation factor TS, e 99.8 7.1E-19 2.4E-23 153.2 9.0 149 5-156 293-485 (1289)
173 2h5e_A Peptide chain release f 99.8 2.7E-18 9.2E-23 141.2 11.4 117 7-126 12-146 (529)
174 3izq_1 HBS1P, elongation facto 99.8 3.4E-19 1.1E-23 148.8 6.1 140 5-147 164-362 (611)
175 1h65_A Chloroplast outer envel 99.8 1E-17 3.5E-22 127.1 13.1 136 6-155 37-185 (270)
176 1dar_A EF-G, elongation factor 99.8 4.3E-18 1.5E-22 144.0 12.1 115 6-127 10-142 (691)
177 1pui_A ENGB, probable GTP-bind 99.8 4.8E-18 1.6E-22 123.8 10.1 140 7-156 25-198 (210)
178 3mca_A HBS1, elongation factor 99.7 4.1E-19 1.4E-23 147.9 2.9 139 5-145 174-371 (592)
179 2dy1_A Elongation factor G; tr 99.7 3E-17 1E-21 138.5 13.5 124 1-127 1-139 (665)
180 1udx_A The GTP-binding protein 99.7 5E-17 1.7E-21 129.8 13.1 148 9-160 158-328 (416)
181 2rdo_7 EF-G, elongation factor 99.7 1.1E-16 3.9E-21 135.6 14.3 116 6-126 8-146 (704)
182 2xex_A Elongation factor G; GT 99.7 8.5E-17 2.9E-21 136.2 12.7 114 6-126 8-139 (693)
183 1zcb_A G alpha I/13; GTP-bindi 99.7 7.1E-17 2.4E-21 127.0 9.9 115 41-159 187-355 (362)
184 1azs_C GS-alpha; complex (lyas 99.7 1.8E-16 6.1E-21 125.8 12.2 115 42-160 204-388 (402)
185 1jwy_B Dynamin A GTPase domain 99.7 2.4E-16 8.4E-21 121.8 11.8 97 59-157 131-262 (315)
186 2qnr_A Septin-2, protein NEDD5 99.7 2.7E-17 9.2E-22 126.6 5.5 148 7-158 17-215 (301)
187 3t34_A Dynamin-related protein 99.7 2.4E-16 8.4E-21 124.2 9.6 143 7-151 33-255 (360)
188 1wxq_A GTP-binding protein; st 99.7 1.3E-16 4.3E-21 127.1 7.0 87 9-95 1-114 (397)
189 1u0l_A Probable GTPase ENGC; p 99.7 5.5E-17 1.9E-21 124.9 4.6 121 23-153 32-169 (301)
190 1n0u_A EF-2, elongation factor 99.6 8.5E-16 2.9E-20 132.5 12.1 120 6-128 17-164 (842)
191 2x2e_A Dynamin-1; nitration, h 99.6 1.7E-16 5.8E-21 124.7 5.9 146 6-153 29-254 (353)
192 3vqt_A RF-3, peptide chain rel 99.6 3.4E-15 1.1E-19 123.3 11.9 116 8-126 31-164 (548)
193 2qag_C Septin-7; cell cycle, c 99.6 6.1E-16 2.1E-20 123.6 7.0 146 7-155 30-225 (418)
194 3p32_A Probable GTPase RV1496/ 99.6 1.9E-15 6.4E-20 118.9 8.3 89 59-157 172-284 (355)
195 2wsm_A Hydrogenase expression/ 99.6 3.5E-15 1.2E-19 109.5 6.8 140 7-158 29-215 (221)
196 2qpt_A EH domain-containing pr 99.6 4E-15 1.4E-19 122.9 7.6 117 6-127 63-231 (550)
197 1jal_A YCHF protein; nucleotid 99.6 5.1E-14 1.7E-18 110.4 12.7 84 9-94 3-108 (363)
198 2hf9_A Probable hydrogenase ni 99.5 9.6E-17 3.3E-21 118.3 -3.3 139 7-157 37-224 (226)
199 2www_A Methylmalonic aciduria 99.5 7.9E-14 2.7E-18 109.3 12.3 88 59-156 167-278 (349)
200 1yrb_A ATP(GTP)binding protein 99.5 5.2E-14 1.8E-18 105.9 10.1 96 59-156 109-256 (262)
201 2p67_A LAO/AO transport system 99.5 3E-14 1E-18 111.5 6.8 88 59-156 149-260 (341)
202 3j25_A Tetracycline resistance 99.5 1E-14 3.6E-19 122.5 4.2 116 8-126 2-131 (638)
203 4a9a_A Ribosome-interacting GT 99.5 3.2E-13 1.1E-17 106.4 11.9 133 8-146 72-212 (376)
204 2dby_A GTP-binding protein; GD 99.5 2.7E-13 9.4E-18 106.7 11.2 84 9-94 2-111 (368)
205 4fn5_A EF-G 1, elongation fact 99.4 1.4E-12 4.9E-17 110.8 13.2 116 8-126 13-149 (709)
206 3zvr_A Dynamin-1; hydrolase, D 99.4 1.6E-12 5.6E-17 110.2 10.8 146 6-154 49-275 (772)
207 2ohf_A Protein OLA1, GTP-bindi 99.3 1.6E-12 5.6E-17 102.8 6.9 90 7-98 21-132 (396)
208 2qm8_A GTPase/ATPase; G protei 99.3 7.3E-12 2.5E-16 97.7 8.6 88 59-156 148-260 (337)
209 3l82_B F-box only protein 4; T 99.2 8.2E-12 2.8E-16 90.1 4.4 91 67-158 110-224 (227)
210 2yv5_A YJEQ protein; hydrolase 99.2 1.1E-10 3.6E-15 89.8 8.6 82 69-152 66-164 (302)
211 3l2o_B F-box only protein 4; s 99.1 8.2E-11 2.8E-15 88.8 4.8 92 66-158 194-309 (312)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 2.7E-09 9.2E-14 84.5 9.6 86 7-94 19-127 (392)
213 3h2y_A GTPase family protein; 98.8 1.5E-08 5.2E-13 79.8 7.0 82 68-154 55-157 (368)
214 2j37_W Signal recognition part 98.8 1.9E-09 6.4E-14 88.0 1.8 142 7-154 100-310 (504)
215 3sop_A Neuronal-specific septi 98.7 2.7E-08 9.3E-13 75.2 7.4 25 8-32 2-26 (270)
216 2qag_B Septin-6, protein NEDD5 98.7 8.4E-08 2.9E-12 76.6 9.9 62 9-70 43-106 (427)
217 3h2y_A GTPase family protein; 98.6 2.9E-09 9.8E-14 84.0 -1.5 116 8-129 160-288 (368)
218 3ec1_A YQEH GTPase; atnos1, at 98.6 4.3E-09 1.5E-13 83.0 -0.6 111 8-128 162-288 (369)
219 3cnl_A YLQF, putative uncharac 98.6 2.6E-08 8.8E-13 75.0 3.6 58 9-72 100-157 (262)
220 1tq4_A IIGP1, interferon-induc 98.6 1.3E-06 4.5E-11 69.6 13.6 143 8-158 69-254 (413)
221 1puj_A YLQF, conserved hypothe 98.6 6.4E-08 2.2E-12 73.6 5.7 60 6-71 118-177 (282)
222 3ec1_A YQEH GTPase; atnos1, at 98.5 8.5E-08 2.9E-12 75.6 5.5 83 68-155 57-160 (369)
223 1f5n_A Interferon-induced guan 98.3 1.6E-06 5.5E-11 72.0 6.7 66 5-71 35-103 (592)
224 1puj_A YLQF, conserved hypothe 98.2 1.9E-06 6.4E-11 65.4 6.4 87 64-157 4-106 (282)
225 1bif_A 6-phosphofructo-2-kinas 98.2 1E-07 3.5E-12 77.4 -1.5 110 6-121 37-156 (469)
226 3dm5_A SRP54, signal recogniti 98.1 1.3E-05 4.4E-10 64.4 9.0 116 7-127 99-252 (443)
227 2v3c_C SRP54, signal recogniti 98.0 2.4E-06 8.3E-11 68.6 3.1 23 8-30 99-121 (432)
228 1knq_A Gluconate kinase; ALFA/ 97.8 2.4E-05 8.2E-10 54.7 4.3 30 1-30 1-30 (175)
229 1ye8_A Protein THEP1, hypothet 97.7 2.3E-05 7.9E-10 55.3 3.5 23 9-31 1-23 (178)
230 3szr_A Interferon-induced GTP- 97.7 7.4E-05 2.5E-09 62.6 6.6 24 9-32 46-69 (608)
231 2wwf_A Thymidilate kinase, put 97.6 4.1E-05 1.4E-09 55.0 4.0 30 1-30 3-32 (212)
232 1j8m_F SRP54, signal recogniti 97.6 0.00019 6.5E-09 54.8 7.7 64 58-127 180-252 (297)
233 3q5d_A Atlastin-1; G protein, 97.6 0.00018 6.1E-09 57.9 7.4 25 7-31 66-90 (447)
234 1kgd_A CASK, peripheral plasma 97.6 5.2E-05 1.8E-09 53.4 3.8 24 8-31 5-28 (180)
235 1uf9_A TT1252 protein; P-loop, 97.6 5.3E-05 1.8E-09 54.0 3.8 31 1-31 1-31 (203)
236 1zp6_A Hypothetical protein AT 97.5 6E-05 2E-09 53.3 3.8 24 8-31 9-32 (191)
237 2bbw_A Adenylate kinase 4, AK4 97.5 5.8E-05 2E-09 55.8 3.6 24 6-29 25-48 (246)
238 1lvg_A Guanylate kinase, GMP k 97.5 5E-05 1.7E-09 54.4 3.1 23 8-30 4-26 (198)
239 3tau_A Guanylate kinase, GMP k 97.5 8.2E-05 2.8E-09 53.6 3.9 25 7-31 7-31 (208)
240 3tr0_A Guanylate kinase, GMP k 97.5 7.5E-05 2.6E-09 53.3 3.6 24 8-31 7-30 (205)
241 3a00_A Guanylate kinase, GMP k 97.4 7.4E-05 2.5E-09 52.9 3.1 22 10-31 3-24 (186)
242 3ney_A 55 kDa erythrocyte memb 97.4 0.00011 3.7E-09 52.7 3.8 25 7-31 18-42 (197)
243 1kht_A Adenylate kinase; phosp 97.4 9.4E-05 3.2E-09 52.1 3.5 23 8-30 3-25 (192)
244 1ex7_A Guanylate kinase; subst 97.4 8.7E-05 3E-09 52.7 3.2 21 11-31 4-24 (186)
245 2yv5_A YJEQ protein; hydrolase 97.4 0.00039 1.3E-08 53.1 7.0 23 9-32 166-188 (302)
246 3c8u_A Fructokinase; YP_612366 97.4 0.00011 3.6E-09 53.0 3.6 26 6-31 20-45 (208)
247 1s96_A Guanylate kinase, GMP k 97.4 9E-05 3.1E-09 54.1 3.2 23 9-31 17-39 (219)
248 3trf_A Shikimate kinase, SK; a 97.4 0.0001 3.6E-09 51.8 3.5 23 8-30 5-27 (185)
249 1znw_A Guanylate kinase, GMP k 97.4 9.2E-05 3.1E-09 53.3 3.2 23 9-31 21-43 (207)
250 1qhx_A CPT, protein (chloramph 97.4 0.00013 4.4E-09 50.9 3.8 24 8-31 3-26 (178)
251 3lw7_A Adenylate kinase relate 97.4 0.0001 3.5E-09 51.0 3.2 20 9-28 2-21 (179)
252 1tev_A UMP-CMP kinase; ploop, 97.4 0.00012 4.1E-09 51.7 3.6 24 7-30 2-25 (196)
253 2plr_A DTMP kinase, probable t 97.4 0.00014 4.7E-09 52.1 3.9 25 6-30 2-26 (213)
254 1z6g_A Guanylate kinase; struc 97.4 0.0001 3.5E-09 53.6 3.2 23 9-31 24-46 (218)
255 3d3q_A TRNA delta(2)-isopenten 97.4 0.00013 4.3E-09 56.7 3.8 29 1-30 1-29 (340)
256 2j41_A Guanylate kinase; GMP, 97.4 0.00013 4.5E-09 52.1 3.7 26 7-32 5-30 (207)
257 3umf_A Adenylate kinase; rossm 97.4 0.00015 5.2E-09 52.7 4.0 27 3-29 23-50 (217)
258 1cke_A CK, MSSA, protein (cyti 97.4 0.00014 4.7E-09 52.9 3.8 23 8-30 5-27 (227)
259 1zd8_A GTP:AMP phosphotransfer 97.4 0.00012 4E-09 53.4 3.4 23 8-30 7-29 (227)
260 1ly1_A Polynucleotide kinase; 97.4 0.00014 4.9E-09 50.7 3.7 22 9-30 3-24 (181)
261 3t61_A Gluconokinase; PSI-biol 97.3 0.00013 4.5E-09 52.1 3.5 23 8-30 18-40 (202)
262 1via_A Shikimate kinase; struc 97.3 0.00013 4.3E-09 51.0 3.2 21 10-30 6-26 (175)
263 1kag_A SKI, shikimate kinase I 97.3 0.00012 4.3E-09 50.8 3.1 23 9-31 5-27 (173)
264 1y63_A LMAJ004144AAA protein; 97.3 0.00019 6.6E-09 50.6 4.1 26 6-31 8-33 (184)
265 2qor_A Guanylate kinase; phosp 97.3 0.00014 4.7E-09 52.2 3.3 24 8-31 12-35 (204)
266 3sr0_A Adenylate kinase; phosp 97.3 0.00014 4.8E-09 52.5 3.3 22 9-30 1-22 (206)
267 1t9h_A YLOQ, probable GTPase E 97.3 6.3E-05 2.2E-09 57.6 1.5 24 9-32 174-197 (307)
268 3kb2_A SPBC2 prophage-derived 97.3 0.00015 5.2E-09 50.1 3.4 22 10-31 3-24 (173)
269 3asz_A Uridine kinase; cytidin 97.3 0.00016 5.6E-09 51.9 3.6 25 6-30 4-28 (211)
270 3fb4_A Adenylate kinase; psych 97.3 0.00015 5.3E-09 52.2 3.4 22 9-30 1-22 (216)
271 3cnl_A YLQF, putative uncharac 97.3 0.00012 4.3E-09 54.8 3.0 78 66-153 4-97 (262)
272 3dl0_A Adenylate kinase; phosp 97.3 0.00016 5.5E-09 52.2 3.4 22 9-30 1-22 (216)
273 4gp7_A Metallophosphoesterase; 97.3 0.00012 4.3E-09 51.0 2.7 20 9-28 10-29 (171)
274 3cm0_A Adenylate kinase; ATP-b 97.3 0.00019 6.6E-09 50.4 3.7 24 7-30 3-26 (186)
275 1aky_A Adenylate kinase; ATP:A 97.3 0.00019 6.4E-09 52.1 3.6 24 7-30 3-26 (220)
276 3tlx_A Adenylate kinase 2; str 97.3 0.00022 7.7E-09 52.7 4.0 25 6-30 27-51 (243)
277 2bdt_A BH3686; alpha-beta prot 97.3 0.00017 5.8E-09 51.0 3.2 21 10-30 4-24 (189)
278 2rhm_A Putative kinase; P-loop 97.2 0.00021 7.3E-09 50.4 3.6 24 7-30 4-27 (193)
279 4eun_A Thermoresistant glucoki 97.2 0.00021 7.2E-09 51.1 3.6 23 8-30 29-51 (200)
280 2cdn_A Adenylate kinase; phosp 97.2 0.00025 8.4E-09 50.6 4.0 25 6-30 18-42 (201)
281 3tif_A Uncharacterized ABC tra 97.2 0.00016 5.5E-09 53.2 2.9 24 9-32 32-55 (235)
282 1htw_A HI0065; nucleotide-bind 97.2 0.0002 6.8E-09 49.5 3.2 24 9-32 34-57 (158)
283 3vaa_A Shikimate kinase, SK; s 97.2 0.00023 7.7E-09 50.9 3.6 22 9-30 26-47 (199)
284 3iij_A Coilin-interacting nucl 97.2 0.00023 8E-09 49.8 3.6 24 7-30 10-33 (180)
285 2jaq_A Deoxyguanosine kinase; 97.2 0.00022 7.4E-09 50.8 3.4 22 9-30 1-22 (205)
286 1nks_A Adenylate kinase; therm 97.2 0.00023 8E-09 50.1 3.5 22 9-30 2-23 (194)
287 2i3b_A HCR-ntpase, human cance 97.2 0.0002 6.9E-09 50.9 3.1 22 10-31 3-24 (189)
288 4e22_A Cytidylate kinase; P-lo 97.2 0.00028 9.5E-09 52.4 4.0 24 6-29 25-48 (252)
289 2c95_A Adenylate kinase 1; tra 97.2 7.4E-05 2.5E-09 52.9 0.7 24 7-30 8-31 (196)
290 3uie_A Adenylyl-sulfate kinase 97.2 0.00024 8.3E-09 50.7 3.4 25 7-31 24-48 (200)
291 3ec2_A DNA replication protein 97.2 0.0002 7E-09 50.1 2.9 24 8-31 38-61 (180)
292 2pcj_A ABC transporter, lipopr 97.2 0.0002 6.8E-09 52.4 2.8 22 10-31 32-53 (224)
293 2if2_A Dephospho-COA kinase; a 97.2 0.00026 9E-09 50.5 3.3 22 9-30 2-23 (204)
294 1e4v_A Adenylate kinase; trans 97.1 0.00026 8.8E-09 51.1 3.3 22 9-30 1-22 (214)
295 1qf9_A UMP/CMP kinase, protein 97.1 0.00042 1.4E-08 48.7 4.3 23 8-30 6-28 (194)
296 2onk_A Molybdate/tungstate ABC 97.1 0.00028 9.5E-09 52.2 3.4 23 9-31 25-47 (240)
297 2rcn_A Probable GTPase ENGC; Y 97.1 0.00026 8.9E-09 55.3 3.3 25 9-33 216-240 (358)
298 2v54_A DTMP kinase, thymidylat 97.1 0.00035 1.2E-08 49.7 3.8 25 7-31 3-27 (204)
299 2cbz_A Multidrug resistance-as 97.1 0.00026 9E-09 52.2 3.2 23 9-31 32-54 (237)
300 1zak_A Adenylate kinase; ATP:A 97.1 0.00029 9.8E-09 51.1 3.2 24 7-30 4-27 (222)
301 2eyu_A Twitching motility prot 97.1 0.00028 9.6E-09 52.8 3.2 23 8-30 25-47 (261)
302 1b0u_A Histidine permease; ABC 97.1 0.00026 8.8E-09 53.0 3.0 24 9-32 33-56 (262)
303 3gfo_A Cobalt import ATP-bindi 97.1 0.00026 8.8E-09 53.4 3.0 24 9-32 35-58 (275)
304 1t9h_A YLOQ, probable GTPase E 97.1 0.00036 1.2E-08 53.5 3.8 74 75-150 79-170 (307)
305 1sgw_A Putative ABC transporte 97.1 0.00028 9.5E-09 51.3 3.0 22 10-31 37-58 (214)
306 3r20_A Cytidylate kinase; stru 97.1 0.00034 1.1E-08 51.5 3.4 25 6-30 7-31 (233)
307 1nn5_A Similar to deoxythymidy 97.1 0.00035 1.2E-08 50.1 3.5 24 7-30 8-31 (215)
308 1mv5_A LMRA, multidrug resista 97.1 0.0003 1E-08 52.0 3.2 23 9-31 29-51 (243)
309 3be4_A Adenylate kinase; malar 97.1 0.00029 1E-08 51.0 3.1 24 7-30 4-27 (217)
310 2v9p_A Replication protein E1; 97.1 0.00031 1.1E-08 53.7 3.4 23 8-30 126-148 (305)
311 1np6_A Molybdopterin-guanine d 97.1 0.00033 1.1E-08 49.2 3.2 23 9-31 7-29 (174)
312 2yvu_A Probable adenylyl-sulfa 97.1 0.00053 1.8E-08 48.2 4.3 25 6-30 11-35 (186)
313 2pt5_A Shikimate kinase, SK; a 97.1 0.00037 1.2E-08 48.1 3.4 22 9-30 1-22 (168)
314 1ukz_A Uridylate kinase; trans 97.1 0.00052 1.8E-08 48.9 4.3 24 7-30 14-37 (203)
315 1gvn_B Zeta; postsegregational 97.1 0.00038 1.3E-08 52.8 3.8 25 6-30 31-55 (287)
316 2ff7_A Alpha-hemolysin translo 97.1 0.00031 1.1E-08 52.1 3.2 24 9-32 36-59 (247)
317 2pze_A Cystic fibrosis transme 97.1 0.00033 1.1E-08 51.3 3.2 23 10-32 36-58 (229)
318 1ak2_A Adenylate kinase isoenz 97.1 0.00042 1.5E-08 50.7 3.8 25 6-30 14-38 (233)
319 1g6h_A High-affinity branched- 97.1 0.00029 1E-08 52.5 2.9 24 9-32 34-57 (257)
320 3aez_A Pantothenate kinase; tr 97.1 0.00045 1.5E-08 53.1 3.9 26 6-31 88-113 (312)
321 2qt1_A Nicotinamide riboside k 97.0 0.00045 1.5E-08 49.5 3.7 25 7-31 20-44 (207)
322 4g1u_C Hemin import ATP-bindin 97.0 0.00033 1.1E-08 52.6 3.1 24 9-32 38-61 (266)
323 2olj_A Amino acid ABC transpor 97.0 0.00036 1.2E-08 52.3 3.2 23 9-31 51-73 (263)
324 1jjv_A Dephospho-COA kinase; P 97.0 0.00043 1.5E-08 49.5 3.5 22 9-30 3-24 (206)
325 2ehv_A Hypothetical protein PH 97.0 0.00036 1.2E-08 51.3 3.2 21 9-29 31-51 (251)
326 2qi9_C Vitamin B12 import ATP- 97.0 0.00037 1.3E-08 51.8 3.2 23 10-32 28-50 (249)
327 2ghi_A Transport protein; mult 97.0 0.00036 1.2E-08 52.2 3.2 23 9-31 47-69 (260)
328 1ji0_A ABC transporter; ATP bi 97.0 0.00037 1.3E-08 51.5 3.2 22 10-31 34-55 (240)
329 3b85_A Phosphate starvation-in 97.0 0.00028 9.5E-09 51.0 2.4 22 10-31 24-45 (208)
330 2vli_A Antibiotic resistance p 97.0 0.00025 8.7E-09 49.6 2.2 24 7-30 4-27 (183)
331 1vpl_A ABC transporter, ATP-bi 97.0 0.00035 1.2E-08 52.2 3.0 24 9-32 42-65 (256)
332 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00042 1.4E-08 51.5 3.4 22 10-31 31-52 (250)
333 2ihy_A ABC transporter, ATP-bi 97.0 0.00038 1.3E-08 52.6 3.2 23 9-31 48-70 (279)
334 2zu0_C Probable ATP-dependent 97.0 0.00042 1.4E-08 52.0 3.4 23 9-31 47-69 (267)
335 4a74_A DNA repair and recombin 97.0 0.00037 1.3E-08 50.5 3.1 23 9-31 26-48 (231)
336 2xb4_A Adenylate kinase; ATP-b 97.0 0.00043 1.5E-08 50.4 3.4 22 9-30 1-22 (223)
337 3lnc_A Guanylate kinase, GMP k 97.0 0.00022 7.5E-09 52.1 1.8 23 9-31 28-51 (231)
338 2ixe_A Antigen peptide transpo 97.0 0.00039 1.3E-08 52.3 3.2 24 9-32 46-69 (271)
339 3tqc_A Pantothenate kinase; bi 97.0 0.0006 2E-08 52.6 4.2 25 6-30 90-114 (321)
340 1u0l_A Probable GTPase ENGC; p 97.0 0.00043 1.5E-08 52.8 3.4 25 9-33 170-194 (301)
341 2jeo_A Uridine-cytidine kinase 97.0 0.00056 1.9E-08 50.5 3.9 24 7-30 24-47 (245)
342 2x8a_A Nuclear valosin-contain 97.0 0.00041 1.4E-08 52.2 3.2 22 10-31 46-67 (274)
343 1jbk_A CLPB protein; beta barr 97.0 0.0005 1.7E-08 47.9 3.4 24 8-31 43-66 (195)
344 1odf_A YGR205W, hypothetical 3 97.0 0.00069 2.4E-08 51.5 4.4 24 6-29 29-52 (290)
345 2nq2_C Hypothetical ABC transp 97.0 0.00046 1.6E-08 51.4 3.2 23 10-32 33-55 (253)
346 2yz2_A Putative ABC transporte 97.0 0.00047 1.6E-08 51.7 3.2 23 9-31 34-56 (266)
347 2pjz_A Hypothetical protein ST 96.9 0.00049 1.7E-08 51.6 3.2 23 10-32 32-54 (263)
348 1rj9_A FTSY, signal recognitio 96.9 0.00062 2.1E-08 52.1 3.9 23 7-29 101-123 (304)
349 2pez_A Bifunctional 3'-phospho 96.9 0.00068 2.3E-08 47.4 3.8 25 6-30 3-27 (179)
350 1ixz_A ATP-dependent metallopr 96.9 0.0005 1.7E-08 50.9 3.2 22 10-31 51-72 (254)
351 2bwj_A Adenylate kinase 5; pho 96.9 0.00056 1.9E-08 48.4 3.4 23 8-30 12-34 (199)
352 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00045 1.5E-08 54.0 3.0 24 9-32 31-54 (359)
353 2f1r_A Molybdopterin-guanine d 96.9 0.00024 8.1E-09 49.8 1.3 22 10-31 4-25 (171)
354 3gmt_A Adenylate kinase; ssgci 96.9 0.00058 2E-08 50.1 3.4 30 1-30 1-30 (230)
355 2pbr_A DTMP kinase, thymidylat 96.9 0.00059 2E-08 48.0 3.4 21 10-30 2-22 (195)
356 1rz3_A Hypothetical protein rb 96.9 0.0007 2.4E-08 48.4 3.8 24 7-30 21-44 (201)
357 1lw7_A Transcriptional regulat 96.9 0.00043 1.5E-08 54.2 2.9 24 8-31 170-193 (365)
358 1xjc_A MOBB protein homolog; s 96.9 0.00067 2.3E-08 47.4 3.5 22 9-30 5-26 (169)
359 2rcn_A Probable GTPase ENGC; Y 96.9 0.0056 1.9E-07 47.8 9.0 70 80-151 128-213 (358)
360 2p5t_B PEZT; postsegregational 96.9 0.0004 1.4E-08 51.6 2.5 25 6-30 30-54 (253)
361 2ze6_A Isopentenyl transferase 96.9 0.00056 1.9E-08 50.9 3.2 21 10-30 3-23 (253)
362 2z0h_A DTMP kinase, thymidylat 96.9 0.00063 2.2E-08 48.1 3.4 22 10-31 2-23 (197)
363 1vht_A Dephospho-COA kinase; s 96.9 0.00078 2.7E-08 48.6 3.9 23 8-30 4-26 (218)
364 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0007 2.4E-08 50.5 3.7 23 8-30 4-26 (260)
365 1z47_A CYSA, putative ABC-tran 96.9 0.00056 1.9E-08 53.4 3.2 23 10-32 43-65 (355)
366 3e70_C DPA, signal recognition 96.9 0.00084 2.9E-08 51.9 4.1 24 7-30 128-151 (328)
367 2yyz_A Sugar ABC transporter, 96.9 0.0006 2E-08 53.4 3.2 24 9-32 30-53 (359)
368 2it1_A 362AA long hypothetical 96.9 0.00061 2.1E-08 53.4 3.2 24 9-32 30-53 (362)
369 3jvv_A Twitching mobility prot 96.9 0.0006 2E-08 53.3 3.2 22 9-30 124-145 (356)
370 2kjq_A DNAA-related protein; s 96.9 0.00039 1.3E-08 47.5 1.9 24 8-31 36-59 (149)
371 3rlf_A Maltose/maltodextrin im 96.8 0.00062 2.1E-08 53.6 3.2 24 9-32 30-53 (381)
372 2iyv_A Shikimate kinase, SK; t 96.8 0.00062 2.1E-08 47.7 2.9 22 9-30 3-24 (184)
373 1lv7_A FTSH; alpha/beta domain 96.8 0.00087 3E-08 49.6 3.8 24 8-31 45-68 (257)
374 1v43_A Sugar-binding transport 96.8 0.00066 2.3E-08 53.4 3.2 24 9-32 38-61 (372)
375 1sq5_A Pantothenate kinase; P- 96.8 0.00093 3.2E-08 51.1 4.0 25 6-30 78-102 (308)
376 2bbs_A Cystic fibrosis transme 96.8 0.00065 2.2E-08 51.6 3.0 23 9-31 65-87 (290)
377 1g29_1 MALK, maltose transport 96.8 0.00067 2.3E-08 53.4 3.2 23 10-32 31-53 (372)
378 1e6c_A Shikimate kinase; phosp 96.8 0.00074 2.5E-08 46.7 3.1 22 9-30 3-24 (173)
379 3crm_A TRNA delta(2)-isopenten 96.8 0.001 3.4E-08 51.3 4.1 22 9-30 6-27 (323)
380 3b9q_A Chloroplast SRP recepto 96.8 0.00097 3.3E-08 51.0 3.9 23 8-30 100-122 (302)
381 2p65_A Hypothetical protein PF 96.8 0.00059 2E-08 47.4 2.5 24 8-31 43-66 (187)
382 1iy2_A ATP-dependent metallopr 96.8 0.00075 2.6E-08 50.7 3.2 22 10-31 75-96 (278)
383 3nh6_A ATP-binding cassette SU 96.8 0.00043 1.5E-08 53.0 1.9 24 8-31 80-103 (306)
384 1gtv_A TMK, thymidylate kinase 96.8 0.00031 1.1E-08 50.4 1.0 21 10-30 2-22 (214)
385 1in4_A RUVB, holliday junction 96.8 0.00074 2.5E-08 52.2 3.2 23 9-31 52-74 (334)
386 3tui_C Methionine import ATP-b 96.8 0.00076 2.6E-08 52.9 3.2 24 9-32 55-78 (366)
387 3bos_A Putative DNA replicatio 96.8 0.00091 3.1E-08 48.5 3.4 24 7-30 51-74 (242)
388 4eaq_A DTMP kinase, thymidylat 96.8 0.0012 4E-08 48.4 3.9 25 7-31 25-49 (229)
389 2ewv_A Twitching motility prot 96.8 0.00086 3E-08 52.7 3.4 23 8-30 136-158 (372)
390 1zcb_A G alpha I/13; GTP-bindi 96.7 0.001 3.5E-08 52.1 3.7 23 6-28 31-53 (362)
391 2gza_A Type IV secretion syste 96.7 0.00078 2.7E-08 52.7 3.0 23 9-31 176-198 (361)
392 1m7g_A Adenylylsulfate kinase; 96.7 0.0013 4.4E-08 47.3 3.9 24 7-30 24-47 (211)
393 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.00096 3.3E-08 48.2 3.2 22 9-30 24-45 (235)
394 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.0008 2.7E-08 52.0 2.9 24 9-32 172-195 (330)
395 1uj2_A Uridine-cytidine kinase 96.7 0.0012 4.1E-08 48.9 3.7 24 7-30 21-44 (252)
396 2f6r_A COA synthase, bifunctio 96.7 0.0014 4.7E-08 49.5 4.1 25 6-30 73-97 (281)
397 3gd7_A Fusion complex of cysti 96.7 0.00086 2.9E-08 53.1 3.0 23 9-31 48-70 (390)
398 3d31_A Sulfate/molybdate ABC t 96.7 0.00056 1.9E-08 53.3 2.0 24 9-32 27-50 (348)
399 1p5z_B DCK, deoxycytidine kina 96.7 0.00071 2.4E-08 50.4 2.4 27 5-31 21-47 (263)
400 2w58_A DNAI, primosome compone 96.7 0.0012 3.9E-08 47.0 3.4 23 9-31 55-77 (202)
401 3foz_A TRNA delta(2)-isopenten 96.7 0.0014 4.6E-08 50.2 3.9 23 9-31 11-33 (316)
402 2vp4_A Deoxynucleoside kinase; 96.7 0.00099 3.4E-08 48.7 3.0 25 7-31 19-43 (230)
403 1zuh_A Shikimate kinase; alpha 96.6 0.0014 4.7E-08 45.2 3.5 22 9-30 8-29 (168)
404 3h4m_A Proteasome-activating n 96.6 0.0013 4.5E-08 49.3 3.6 25 7-31 50-74 (285)
405 3t15_A Ribulose bisphosphate c 96.6 0.0013 4.4E-08 49.9 3.6 25 7-31 35-59 (293)
406 1ltq_A Polynucleotide kinase; 96.6 0.0013 4.5E-08 49.8 3.6 22 9-30 3-24 (301)
407 3b9p_A CG5977-PA, isoform A; A 96.6 0.0013 4.5E-08 49.6 3.6 25 7-31 53-77 (297)
408 2og2_A Putative signal recogni 96.6 0.0015 5E-08 51.1 3.9 24 7-30 156-179 (359)
409 1p9r_A General secretion pathw 96.6 0.0011 3.7E-08 53.0 3.2 23 9-31 168-190 (418)
410 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.0015 5.2E-08 48.2 3.8 24 7-30 38-61 (262)
411 3syl_A Protein CBBX; photosynt 96.6 0.0016 5.6E-08 49.4 4.0 25 6-30 65-89 (309)
412 3kta_A Chromosome segregation 96.6 0.0012 4.1E-08 46.1 3.0 21 10-30 28-48 (182)
413 3n70_A Transport activator; si 96.6 0.0015 5E-08 44.2 3.3 26 7-32 23-48 (145)
414 3nwj_A ATSK2; P loop, shikimat 96.6 0.0012 4.2E-08 49.0 3.0 23 8-30 48-70 (250)
415 1oxx_K GLCV, glucose, ABC tran 96.6 0.00057 1.9E-08 53.4 1.2 24 9-32 32-55 (353)
416 3ake_A Cytidylate kinase; CMP 96.6 0.0018 6.2E-08 46.1 3.7 21 10-30 4-24 (208)
417 2h92_A Cytidylate kinase; ross 96.6 0.0014 4.8E-08 47.2 3.2 24 7-30 2-25 (219)
418 4fcw_A Chaperone protein CLPB; 96.6 0.0023 7.8E-08 48.5 4.5 24 8-31 47-70 (311)
419 1d2n_A N-ethylmaleimide-sensit 96.6 0.0021 7.2E-08 48.0 4.2 26 6-31 62-87 (272)
420 2yhs_A FTSY, cell division pro 96.6 0.0017 6E-08 52.8 3.9 24 7-30 292-315 (503)
421 2oap_1 GSPE-2, type II secreti 96.6 0.0012 4.2E-08 54.0 3.1 24 9-32 261-284 (511)
422 2cvh_A DNA repair and recombin 96.5 0.0015 5.1E-08 46.9 3.2 23 8-30 20-42 (220)
423 3cf0_A Transitional endoplasmi 96.5 0.0017 5.8E-08 49.4 3.6 25 7-31 48-72 (301)
424 1njg_A DNA polymerase III subu 96.5 0.0015 5E-08 47.2 3.2 21 10-30 47-67 (250)
425 1nij_A Hypothetical protein YJ 96.5 0.0012 4.1E-08 50.7 2.8 24 9-32 5-28 (318)
426 2chg_A Replication factor C sm 96.5 0.0015 5.2E-08 46.5 3.2 22 10-31 40-61 (226)
427 1tue_A Replication protein E1; 96.5 0.0012 4.1E-08 47.5 2.5 22 9-30 59-80 (212)
428 1cr0_A DNA primase/helicase; R 96.5 0.0014 4.7E-08 49.7 3.1 22 9-30 36-57 (296)
429 1n0w_A DNA repair protein RAD5 96.5 0.0016 5.3E-08 47.6 3.2 23 9-31 25-47 (243)
430 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0013 4.3E-08 53.3 2.9 24 8-31 138-161 (460)
431 1a7j_A Phosphoribulokinase; tr 96.5 0.00078 2.7E-08 51.2 1.5 25 6-30 3-27 (290)
432 2grj_A Dephospho-COA kinase; T 96.5 0.002 6.9E-08 45.8 3.6 25 7-31 11-35 (192)
433 4edh_A DTMP kinase, thymidylat 96.5 0.0021 7.3E-08 46.5 3.7 26 5-30 3-28 (213)
434 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0088 3E-07 48.1 7.5 65 7-71 66-152 (457)
435 3eie_A Vacuolar protein sortin 96.5 0.0026 8.9E-08 48.8 4.4 26 6-31 49-74 (322)
436 3exa_A TRNA delta(2)-isopenten 96.5 0.0023 7.9E-08 49.0 3.9 24 8-31 3-26 (322)
437 4b4t_M 26S protease regulatory 96.4 0.0023 7.7E-08 51.3 3.8 26 6-31 213-238 (434)
438 2obl_A ESCN; ATPase, hydrolase 96.4 0.0019 6.6E-08 50.3 3.3 24 9-32 72-95 (347)
439 1svm_A Large T antigen; AAA+ f 96.4 0.0023 7.7E-08 50.4 3.7 24 7-30 168-191 (377)
440 1sxj_E Activator 1 40 kDa subu 96.4 0.0021 7.2E-08 49.7 3.5 20 11-30 39-58 (354)
441 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0026 9E-08 48.9 4.0 26 6-31 43-68 (322)
442 1q3t_A Cytidylate kinase; nucl 96.4 0.0025 8.6E-08 46.6 3.7 25 6-30 14-38 (236)
443 1l8q_A Chromosomal replication 96.4 0.0019 6.4E-08 49.5 3.1 23 9-31 38-60 (324)
444 1ofh_A ATP-dependent HSL prote 96.4 0.002 6.9E-08 48.7 3.3 24 8-31 50-73 (310)
445 4b4t_K 26S protease regulatory 96.4 0.0025 8.6E-08 51.0 3.8 25 7-31 205-229 (428)
446 4b4t_L 26S protease subunit RP 96.3 0.0026 9E-08 51.0 3.8 26 6-31 213-238 (437)
447 2dpy_A FLII, flagellum-specifi 96.3 0.0023 8E-08 51.4 3.3 24 9-32 158-181 (438)
448 3v9p_A DTMP kinase, thymidylat 96.3 0.002 6.9E-08 47.1 2.7 25 6-30 23-47 (227)
449 2qby_A CDC6 homolog 1, cell di 96.3 0.0023 7.7E-08 49.8 3.1 24 8-31 45-68 (386)
450 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0027 9.4E-08 43.2 3.2 20 10-29 25-44 (149)
451 1sxj_C Activator 1 40 kDa subu 96.3 0.0032 1.1E-07 48.7 3.9 21 11-31 49-69 (340)
452 3zvl_A Bifunctional polynucleo 96.3 0.0032 1.1E-07 50.2 3.9 24 7-30 257-280 (416)
453 3uk6_A RUVB-like 2; hexameric 96.2 0.0036 1.2E-07 48.6 4.0 24 8-31 70-93 (368)
454 3euj_A Chromosome partition pr 96.2 0.0026 9E-08 51.6 3.2 22 9-30 30-51 (483)
455 4b4t_J 26S protease regulatory 96.2 0.0029 9.8E-08 50.2 3.4 26 6-31 180-205 (405)
456 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0028 9.6E-08 52.3 3.4 25 8-32 47-71 (538)
457 1fnn_A CDC6P, cell division co 96.2 0.003 1E-07 49.3 3.5 22 10-31 46-67 (389)
458 3co5_A Putative two-component 96.2 0.0016 5.4E-08 43.9 1.6 23 8-30 27-49 (143)
459 3hws_A ATP-dependent CLP prote 96.2 0.0033 1.1E-07 49.0 3.6 25 7-31 50-74 (363)
460 1nlf_A Regulatory protein REPA 96.2 0.0028 9.5E-08 47.6 3.1 22 9-30 31-52 (279)
461 2px0_A Flagellar biosynthesis 96.2 0.0037 1.3E-07 47.5 3.7 23 7-29 104-126 (296)
462 1um8_A ATP-dependent CLP prote 96.2 0.0035 1.2E-07 49.1 3.6 25 7-31 71-95 (376)
463 3b60_A Lipid A export ATP-bind 96.2 0.0028 9.4E-08 52.8 3.1 24 8-31 369-392 (582)
464 1vma_A Cell division protein F 96.2 0.0043 1.5E-07 47.4 3.9 22 8-29 104-125 (306)
465 2qp9_X Vacuolar protein sortin 96.1 0.0034 1.2E-07 49.0 3.4 25 7-31 83-107 (355)
466 2dr3_A UPF0273 protein PH0284; 96.1 0.0032 1.1E-07 45.9 3.0 21 9-29 24-44 (247)
467 2r62_A Cell division protease 96.1 0.0014 4.9E-08 48.7 1.1 22 9-30 45-66 (268)
468 3b5x_A Lipid A export ATP-bind 96.1 0.0032 1.1E-07 52.4 3.2 23 9-31 370-392 (582)
469 2ocp_A DGK, deoxyguanosine kin 96.1 0.0044 1.5E-07 45.4 3.7 24 8-31 2-25 (241)
470 2qmh_A HPR kinase/phosphorylas 96.1 0.0033 1.1E-07 45.0 2.8 25 8-32 34-58 (205)
471 2v1u_A Cell division control p 96.1 0.003 1E-07 49.1 2.8 25 7-31 43-67 (387)
472 3lv8_A DTMP kinase, thymidylat 96.1 0.0043 1.5E-07 45.6 3.4 26 5-30 24-49 (236)
473 3d8b_A Fidgetin-like protein 1 96.1 0.0043 1.5E-07 48.4 3.6 25 7-31 116-140 (357)
474 3pfi_A Holliday junction ATP-d 96.1 0.0038 1.3E-07 48.0 3.2 24 8-31 55-78 (338)
475 1sxj_D Activator 1 41 kDa subu 96.1 0.0037 1.3E-07 48.2 3.2 22 10-31 60-81 (353)
476 3a8t_A Adenylate isopentenyltr 96.1 0.0053 1.8E-07 47.5 4.0 22 9-30 41-62 (339)
477 1g41_A Heat shock protein HSLU 96.0 0.0045 1.6E-07 49.7 3.6 24 7-30 49-72 (444)
478 4b4t_I 26S protease regulatory 96.0 0.0048 1.7E-07 49.3 3.7 26 6-31 214-239 (437)
479 3ozx_A RNAse L inhibitor; ATP 96.0 0.0036 1.2E-07 51.6 3.0 24 9-32 26-49 (538)
480 3j16_B RLI1P; ribosome recycli 96.0 0.0052 1.8E-07 51.4 4.0 26 8-33 103-128 (608)
481 4b4t_H 26S protease regulatory 96.0 0.0043 1.5E-07 50.0 3.3 26 6-31 241-266 (467)
482 3m6a_A ATP-dependent protease 96.0 0.0054 1.9E-07 50.6 4.0 25 7-31 107-131 (543)
483 3qf7_A RAD50; ABC-ATPase, ATPa 96.0 0.0043 1.5E-07 48.6 3.2 19 11-29 26-44 (365)
484 2qgz_A Helicase loader, putati 96.0 0.0053 1.8E-07 46.9 3.6 23 8-30 152-174 (308)
485 2bjv_A PSP operon transcriptio 96.0 0.0046 1.6E-07 45.9 3.2 25 8-32 29-53 (265)
486 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0065 2.2E-07 47.4 4.1 22 8-29 24-45 (359)
487 2qen_A Walker-type ATPase; unk 95.9 0.0046 1.6E-07 47.4 3.2 22 10-31 33-54 (350)
488 1c9k_A COBU, adenosylcobinamid 95.9 0.0048 1.7E-07 43.4 3.0 21 11-31 2-22 (180)
489 2qby_B CDC6 homolog 3, cell di 95.9 0.0047 1.6E-07 48.2 3.3 24 8-31 45-68 (384)
490 3te6_A Regulatory protein SIR3 95.9 0.0036 1.2E-07 48.1 2.6 26 6-31 43-68 (318)
491 3bk7_A ABC transporter ATP-bin 95.9 0.0043 1.5E-07 51.9 3.2 21 10-30 119-139 (607)
492 2zan_A Vacuolar protein sortin 95.9 0.0055 1.9E-07 49.3 3.7 25 7-31 166-190 (444)
493 3ozx_A RNAse L inhibitor; ATP 95.9 0.0045 1.5E-07 51.0 3.2 23 10-32 296-318 (538)
494 1pzn_A RAD51, DNA repair and r 95.9 0.0045 1.5E-07 48.2 3.1 23 9-31 132-154 (349)
495 1yqt_A RNAse L inhibitor; ATP- 95.9 0.005 1.7E-07 50.8 3.4 24 9-32 313-336 (538)
496 2dhr_A FTSH; AAA+ protein, hex 95.9 0.0045 1.5E-07 50.5 3.1 22 10-31 66-87 (499)
497 3pxg_A Negative regulator of g 95.9 0.0042 1.4E-07 50.3 2.9 24 8-31 201-224 (468)
498 2ce7_A Cell division protein F 95.9 0.0058 2E-07 49.6 3.7 22 9-30 50-71 (476)
499 2z4s_A Chromosomal replication 95.9 0.0047 1.6E-07 49.6 3.1 23 8-30 130-152 (440)
500 2c9o_A RUVB-like 1; hexameric 95.9 0.007 2.4E-07 48.8 4.2 25 6-30 61-85 (456)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5.8e-38 Score=231.43 Aligned_cols=153 Identities=31% Similarity=0.541 Sum_probs=127.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
++.+||+|+|++|||||||+++|..+.|...+ .+|++.++.......++..+.+.+|||+|+++|..++..+++.+++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~--~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCc--CCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 56799999999999999999999999997665 7889989988888899999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++++++|+.+..|+..+.... +++|++|||||+|+... ..+|++|||++|.||+++|+
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence 999999999999999999999988765 78999999999997542 23899999999999999999
Q ss_pred HHHHHHHHhhh
Q psy17231 150 DIGRQLILSNR 160 (189)
Q Consensus 150 ~i~~~i~~~~~ 160 (189)
.|++.+.+...
T Consensus 169 ~i~~~i~~~~~ 179 (216)
T 4dkx_A 169 RVAAALPGMES 179 (216)
T ss_dssp HHHHHC-----
T ss_pred HHHHHHHhhhc
Confidence 99998875543
No 2
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.9e-33 Score=198.64 Aligned_cols=162 Identities=32% Similarity=0.479 Sum_probs=137.5
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY 80 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 80 (189)
|+....+.+||+++|++|||||||+++|.+..+.... .++.+.+.....+..++..+.+.+||+||++.+...+..++
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 79 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYY 79 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CC--TTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGG
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCcc--CCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHh
Confidence 4555567899999999999999999999988876554 66666677778888888889999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHH
Q psy17231 81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~ 145 (189)
+.+|++++|||++++++++.+..|+..+....+++|+++|+||+|+... ..+++++||++|.|++
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 80 RGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVE 159 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 9999999999999999999999999999888788999999999996532 2389999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q psy17231 146 EMFADIGRQLILSNRSRLE 164 (189)
Q Consensus 146 ~~~~~i~~~i~~~~~~~~~ 164 (189)
++|+++.+.+.+...+..+
T Consensus 160 ~l~~~l~~~~~~~~~~~~~ 178 (181)
T 3tw8_B 160 EMFNCITELVLRAKKDNLA 178 (181)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 9999999999877665443
No 3
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=8.7e-32 Score=194.83 Aligned_cols=153 Identities=36% Similarity=0.515 Sum_probs=135.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+.... .++.+.+.....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 34689999999999999999999998886655 5666667877888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999998875 67999999999997432 23899999999999999999
Q ss_pred HHHHHHHHhhh
Q psy17231 150 DIGRQLILSNR 160 (189)
Q Consensus 150 ~i~~~i~~~~~ 160 (189)
++.+.+.+...
T Consensus 172 ~l~~~i~~~~~ 182 (196)
T 3tkl_A 172 TMAAEIKKRMG 182 (196)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhc
Confidence 99999987644
No 4
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=6.9e-33 Score=198.70 Aligned_cols=159 Identities=30% Similarity=0.451 Sum_probs=109.2
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY 80 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 80 (189)
|+....+.+||+++|++|||||||+++|.+..+...+ .++++.++....+.+++..+.+.+||+||++++...+..++
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 78 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY 78 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------CH--HHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTT
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHH
Confidence 5554566899999999999999999999988775443 67777777777788888889999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCH
Q psy17231 81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGV 144 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i 144 (189)
+.+|++++|||++++++|+.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|+
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i 158 (183)
T 2fu5_C 79 RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINV 158 (183)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCH
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 99999999999999999999999999988864 67999999999997531 237899999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy17231 145 EEMFADIGRQLILSNRS 161 (189)
Q Consensus 145 ~~~~~~i~~~i~~~~~~ 161 (189)
+++|+++.+.+.+...+
T Consensus 159 ~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 159 ENAFFTLARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999998766443
No 5
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=6.5e-32 Score=193.96 Aligned_cols=158 Identities=31% Similarity=0.490 Sum_probs=136.8
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY 80 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 80 (189)
|+....+.+||+++|++|||||||+++|.+..+...+ .++.+.++....+..++..+.+.+||+||++++...+..++
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 80 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYY 80 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTS
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHH
Confidence 4444466799999999999999999999998886555 66677777777888888888999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCH
Q psy17231 81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGV 144 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i 144 (189)
+.+|++++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|+
T Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 160 (186)
T 2bme_A 81 RGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENV 160 (186)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 99999999999999999999999999887765 68999999999997532 237899999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy17231 145 EEMFADIGRQLILSNR 160 (189)
Q Consensus 145 ~~~~~~i~~~i~~~~~ 160 (189)
+++|+++.+.+.+...
T Consensus 161 ~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 161 EEAFVQCARKILNKIE 176 (186)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999886543
No 6
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.1e-31 Score=191.53 Aligned_cols=157 Identities=22% Similarity=0.364 Sum_probs=132.8
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY 80 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 80 (189)
|.....+.++|+++|++|||||||+++|.+..+.... .+|.+..+. ..+..++..+.+.+||+||++++..++..++
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~ 78 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDY--DPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYM 78 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSC--CTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHH
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCcccc--CCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHH
Confidence 5556677899999999999999999999998776554 566654444 5667788788999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCC
Q psy17231 81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEG 143 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~ 143 (189)
+.++++++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (181)
T 2fn4_A 79 RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLN 158 (181)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 99999999999999999999999999885543 58999999999997542 23789999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy17231 144 VEEMFADIGRQLILSNR 160 (189)
Q Consensus 144 i~~~~~~i~~~i~~~~~ 160 (189)
++++|+++.+.+.+...
T Consensus 159 v~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 159 VDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999876543
No 7
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.5e-32 Score=197.16 Aligned_cols=152 Identities=35% Similarity=0.547 Sum_probs=134.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
+.+||+++|++|||||||+++|.+..+.... .+|++.++....+.+++..+.+.+||+||++++..++..+++.++++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 4689999999999999999999998886554 67777788888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
++|||++++++|+.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|++
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 182 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD 182 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988775 57999999999997532 237899999999999999999
Q ss_pred HHHHHHHhhh
Q psy17231 151 IGRQLILSNR 160 (189)
Q Consensus 151 i~~~i~~~~~ 160 (189)
+.+.+.+...
T Consensus 183 l~~~i~~~~~ 192 (201)
T 2ew1_A 183 LACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999876543
No 8
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=6.5e-32 Score=197.17 Aligned_cols=161 Identities=35% Similarity=0.507 Sum_probs=135.8
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY 80 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 80 (189)
|++...+.++|+++|++|||||||+++|.+..+...+ .++++.++....+..++..+.+.+||+||++++...+..++
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 78 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFY 78 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGG
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHH
Confidence 6777788999999999999999999999998876554 66777788777788888788999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeecccccc---------------cCCceEEeeccC
Q psy17231 81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHN---------------LISSTYKTSCKT 140 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~---------------~~~~~~~~Sa~~ 140 (189)
+.+|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.. ...+++++||++
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (207)
T 1vg8_A 79 RGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKE 158 (207)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTT
T ss_pred hCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 99999999999999999999999999887654 4789999999999742 123789999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhh
Q psy17231 141 GEGVEEMFADIGRQLILSNRSRL 163 (189)
Q Consensus 141 ~~~i~~~~~~i~~~i~~~~~~~~ 163 (189)
|.|++++|+++.+.+.+......
T Consensus 159 g~gi~~l~~~l~~~~~~~~~~~~ 181 (207)
T 1vg8_A 159 AINVEQAFQTIARNALKQETEVE 181 (207)
T ss_dssp TBSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccccc
Confidence 99999999999999987765443
No 9
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.8e-31 Score=194.94 Aligned_cols=160 Identities=33% Similarity=0.478 Sum_probs=138.5
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY 80 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 80 (189)
|+......+||+++|++|||||||+++|.+..+...+ .++++.++....+..++..+.+.+||+||++++...+..++
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 78 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY--ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYY 78 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTC--CCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGG
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhc
Confidence 5544456799999999999999999999998886554 66777777777888888889999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCH
Q psy17231 81 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGV 144 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i 144 (189)
+.+|++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|+
T Consensus 79 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 158 (206)
T 2bcg_Y 79 RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNV 158 (206)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTH
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 99999999999999999999999999988775 67999999999997531 237999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy17231 145 EEMFADIGRQLILSNRSR 162 (189)
Q Consensus 145 ~~~~~~i~~~i~~~~~~~ 162 (189)
+++|+++.+.+.+.....
T Consensus 159 ~~l~~~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 159 EDAFLTMARQIKESMSQQ 176 (206)
T ss_dssp HHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999998776543
No 10
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.2e-31 Score=190.83 Aligned_cols=150 Identities=23% Similarity=0.369 Sum_probs=130.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.+||+++|++|||||||+++|.+..+.... .++.+... ......++..+.+.+||+||++++...+..+++.+|
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY--DPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 466899999999999999999999988876555 55655444 666778888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeecc-CCCCHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCK-TGEGVEE 146 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~-~~~~i~~ 146 (189)
++++|||++++++|+.+..|+..+.... .++|+++|+||+|+... ..+++++||+ +|.|+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence 9999999999999999999999887643 68999999999997431 2389999999 9999999
Q ss_pred HHHHHHHHHHH
Q psy17231 147 MFADIGRQLIL 157 (189)
Q Consensus 147 ~~~~i~~~i~~ 157 (189)
+|+++.+.+.+
T Consensus 172 l~~~l~~~i~~ 182 (183)
T 3kkq_A 172 TFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 11
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=2.2e-31 Score=192.44 Aligned_cols=153 Identities=30% Similarity=0.437 Sum_probs=131.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.+||+++|++|||||||+++|.+..+.... .++.+.++....+..++..+.+.+||+||++++...+..+++.++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 355789999999999999999999998876554 566666777777888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
++++|||++++++++.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|++++|
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999988765 68999999999997531 2378999999999999999
Q ss_pred HHHHHHHHHhh
Q psy17231 149 ADIGRQLILSN 159 (189)
Q Consensus 149 ~~i~~~i~~~~ 159 (189)
+++.+.+.+..
T Consensus 176 ~~l~~~i~~~~ 186 (191)
T 2a5j_A 176 INTAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 12
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.5e-31 Score=188.90 Aligned_cols=150 Identities=35% Similarity=0.500 Sum_probs=131.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA 83 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 83 (189)
+.++.+||+++|++|||||||+++|.++.+.... .++.+.++....+..++..+.+.+||+||++++...+..+++.+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 79 (170)
T 1r2q_A 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQ--ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGA 79 (170)
T ss_dssp CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCC
Confidence 3467899999999999999999999998876554 56666677777788888889999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231 84 EAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~ 147 (189)
|++++|||++++++++.+..|+..+.... ++.|+++|+||+|+... ..+++++||++|.|++++
T Consensus 80 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 159 (170)
T 1r2q_A 80 QAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 159 (170)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999988775 68999999999997532 237899999999999999
Q ss_pred HHHHHHHH
Q psy17231 148 FADIGRQL 155 (189)
Q Consensus 148 ~~~i~~~i 155 (189)
|+++.+.+
T Consensus 160 ~~~i~~~~ 167 (170)
T 1r2q_A 160 FMAIAKKL 167 (170)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHHH
Confidence 99998765
No 13
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-31 Score=189.13 Aligned_cols=148 Identities=31% Similarity=0.546 Sum_probs=131.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
++.+||+++|++|||||||+++|.+..+.... .++.+.++....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus 1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~ 78 (170)
T 1ek0_A 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENK--EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQA 78 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcE
Confidence 46799999999999999999999998876554 6677777777778888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~~ 146 (189)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|+++
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (170)
T 1ek0_A 79 ALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVND 158 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred EEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999988875 68999999999997532 23789999999999999
Q ss_pred HHHHHHHHH
Q psy17231 147 MFADIGRQL 155 (189)
Q Consensus 147 ~~~~i~~~i 155 (189)
+|+++.+.+
T Consensus 159 l~~~l~~~i 167 (170)
T 1ek0_A 159 VFLGIGEKI 167 (170)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHHH
Confidence 999998765
No 14
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=195.25 Aligned_cols=153 Identities=31% Similarity=0.523 Sum_probs=128.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+...+ .+|++.++....+.+++..+.+.+||+||++++..++..+++.+|+
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCC--CCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 34689999999999999999999998876544 6777777777788888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CC-ceEEeeccCCCCHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------IS-STYKTSCKTGEGVEEMF 148 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~-~~~~~Sa~~~~~i~~~~ 148 (189)
+++|||++++++|+.+..|+..+.... .++|+++|+||+|+... .. +++++||++|.|++++|
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 184 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999999998875 68999999999997541 22 78999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy17231 149 ADIGRQLILSNR 160 (189)
Q Consensus 149 ~~i~~~i~~~~~ 160 (189)
+++.+.+.+...
T Consensus 185 ~~l~~~i~~~~~ 196 (201)
T 2hup_A 185 LRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcc
Confidence 999999876543
No 15
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=7e-32 Score=192.82 Aligned_cols=157 Identities=35% Similarity=0.531 Sum_probs=119.5
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCccccccchHHH
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGMERVASITSSY 79 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~ 79 (189)
|+....+.++|+++|++|||||||+++|.+..+...+ .++.+.++....+..+ +....+.+||+||++++...+..+
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 78 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQY--KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAF 78 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC----------CC
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCccc--CCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHH
Confidence 6666778899999999999999999999998876554 5666667777777666 556789999999999999999999
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeecccccc-----------------cCCceEEee
Q psy17231 80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHN-----------------LISSTYKTS 137 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~-----------------~~~~~~~~S 137 (189)
++.+|++++|||++++.+++.+..|+..+.... .++|+++|+||+|+.. ...+++++|
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~S 158 (182)
T 1ky3_A 79 YRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTS 158 (182)
T ss_dssp STTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEB
T ss_pred hhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEe
Confidence 999999999999999999999999999887753 5799999999999731 123799999
Q ss_pred ccCCCCHHHHHHHHHHHHHHhh
Q psy17231 138 CKTGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 138 a~~~~~i~~~~~~i~~~i~~~~ 159 (189)
|++|.|++++|+++.+.+.+.+
T Consensus 159 a~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 159 AKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999887653
No 16
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.3e-31 Score=187.78 Aligned_cols=150 Identities=30% Similarity=0.476 Sum_probs=132.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
...+||+++|++|||||||+++|.+..+...+ .++.+.++....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 80 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDY--KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQA 80 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCS--SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCE
Confidence 46799999999999999999999998876544 6677777777888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
+++|||++++++++.+..|+..+.....+.|+++|+||+|+... ..+++++||++|.|++++|++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 81 CVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 99999999999999999999998877678999999999997542 237899999999999999999
Q ss_pred HHHHHHH
Q psy17231 151 IGRQLIL 157 (189)
Q Consensus 151 i~~~i~~ 157 (189)
+.+.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
No 17
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=3.4e-31 Score=189.33 Aligned_cols=152 Identities=35% Similarity=0.534 Sum_probs=131.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.+||+++|++|+|||||+++|....+.... .++++.++....+..++..+.+.+||+||++++...+..+++.+|
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ--ESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTS--CCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcC--CCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 456799999999999999999999998876554 566676777777888888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
++++|||++++.+++.+..|+..+.... +++|+++|+||+|+... ..+++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999999999999988875 68999999999997421 2378999999999999999
Q ss_pred HHHHHHHHHh
Q psy17231 149 ADIGRQLILS 158 (189)
Q Consensus 149 ~~i~~~i~~~ 158 (189)
+++.+.+.+.
T Consensus 167 ~~l~~~~~~~ 176 (181)
T 2efe_B 167 YEIARRLPRV 176 (181)
T ss_dssp HHHHHTCC--
T ss_pred HHHHHHHHhc
Confidence 9998877543
No 18
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=3.9e-31 Score=192.70 Aligned_cols=155 Identities=30% Similarity=0.471 Sum_probs=135.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
....+||+++|++|||||||+++|.+..+.... .++.+.++....+..++..+.+.+||+||++++...+..+++.+|
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAF--VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCC--CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 345799999999999999999999998876554 566677777777888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
++++|||++++++++.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|++++|
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 9999999999999999999999988765 68999999999997532 2378999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy17231 149 ADIGRQLILSNRS 161 (189)
Q Consensus 149 ~~i~~~i~~~~~~ 161 (189)
+++.+.+.+...+
T Consensus 163 ~~l~~~i~~~~~~ 175 (203)
T 1zbd_A 163 ERLVDVICEKMSE 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999998876443
No 19
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.9e-31 Score=189.95 Aligned_cols=152 Identities=30% Similarity=0.472 Sum_probs=133.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+...+ .++.+.++....+...+..+.+.+||+||++++...+..+++.+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS--RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC--CCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 34689999999999999999999998886554 6677777777778888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++++.+++.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 180 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999988764 68999999999997542 23789999999999999999
Q ss_pred HHHHHHHHhh
Q psy17231 150 DIGRQLILSN 159 (189)
Q Consensus 150 ~i~~~i~~~~ 159 (189)
++.+.+.+..
T Consensus 181 ~l~~~i~~~~ 190 (193)
T 2oil_A 181 TVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 20
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=3.9e-31 Score=188.35 Aligned_cols=152 Identities=34% Similarity=0.545 Sum_probs=131.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.++|+++|++|||||||++++.+..+.... .++.+.++....+..++..+.+.+||+||++++...+..+++.++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSD 81 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCS
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCC
Confidence 456799999999999999999999998876544 667777777788888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC-----CCCcEEEEeecccccc---------------cCCceEEeeccCCCCH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHN---------------LISSTYKTSCKTGEGV 144 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~---------------~~~~~~~~Sa~~~~~i 144 (189)
++++|||++++.+++.+..|+..+.... .++|+++|+||+|+.. ...+++++||++|.|+
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 82 CCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999999887653 5789999999999742 1237999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy17231 145 EEMFADIGRQLILS 158 (189)
Q Consensus 145 ~~~~~~i~~~i~~~ 158 (189)
+++|+++.+.+.+.
T Consensus 162 ~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 162 AAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988753
No 21
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=4.5e-31 Score=188.11 Aligned_cols=150 Identities=29% Similarity=0.505 Sum_probs=131.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+.... .++.+.++....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--TTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 44799999999999999999999998876544 5666667777778888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++++.+++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999988876 68999999999997431 23789999999999999999
Q ss_pred HHHHHHHH
Q psy17231 150 DIGRQLIL 157 (189)
Q Consensus 150 ~i~~~i~~ 157 (189)
++.+.+.+
T Consensus 171 ~l~~~i~~ 178 (179)
T 1z0f_A 171 EAAKKIYQ 178 (179)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99988753
No 22
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.4e-31 Score=188.19 Aligned_cols=151 Identities=25% Similarity=0.319 Sum_probs=120.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--cccchHHHhcCC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER--VASITSSYYKFA 83 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~ 83 (189)
++.+||+++|++|||||||+++|.+..+.... ++.+.+.....+.+++..+.+.+||+||++. +..+...+++.+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 78 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH---EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGG 78 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C---CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSC
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc---CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccC
Confidence 56799999999999999999999988765443 3455576677778888888999999999987 556677888999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHH
Q psy17231 84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~ 146 (189)
+++++|||++++++|+.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|+++
T Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 158 (175)
T 2nzj_A 79 SAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAE 158 (175)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Confidence 99999999999999999999999888753 57999999999997532 13789999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy17231 147 MFADIGRQLILSN 159 (189)
Q Consensus 147 ~~~~i~~~i~~~~ 159 (189)
+|+++.+.+...+
T Consensus 159 l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 159 LFEGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999886554
No 23
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=2.4e-31 Score=188.19 Aligned_cols=151 Identities=29% Similarity=0.519 Sum_probs=125.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.+||+++|++|||||||+++|.+..+.... .++.+.++....+..++..+.+.+||+||++++...+..+++.+|
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 80 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKH--ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSN 80 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSC--CCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCS
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCC--CCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCC
Confidence 356799999999999999999999998876544 666676777777778888899999999999999988889999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
++++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|
T Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1z08_A 81 GAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160 (170)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 9999999999999999999999887654 57999999999997542 2378999999999999999
Q ss_pred HHHHHHHHH
Q psy17231 149 ADIGRQLIL 157 (189)
Q Consensus 149 ~~i~~~i~~ 157 (189)
+++.+.+.+
T Consensus 161 ~~l~~~~~~ 169 (170)
T 1z08_A 161 LDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999988753
No 24
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-31 Score=195.73 Aligned_cols=154 Identities=19% Similarity=0.333 Sum_probs=128.4
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHh
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYY 80 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 80 (189)
|.+...+.+||+++|++|||||||+++|.+..+...+ .+|++..+ ...+..++..+.+.+||+||+++|..++..++
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 97 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENY--VPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSY 97 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGC
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhc
Confidence 4455567899999999999999999999999886544 56665444 44566677788999999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-C
Q psy17231 81 KFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-S 131 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~ 131 (189)
+.++++++|||++++++|+.+ ..|+..+....++.|+++|+||+|+... . .
T Consensus 98 ~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 177 (205)
T 1gwn_A 98 PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA 177 (205)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCC
Confidence 999999999999999999999 7999988887778999999999998631 1 3
Q ss_pred ceEEeecc-CCCCHHHHHHHHHHHHHH
Q psy17231 132 STYKTSCK-TGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 132 ~~~~~Sa~-~~~~i~~~~~~i~~~i~~ 157 (189)
+|++|||+ +|.|++++|+++++.+++
T Consensus 178 ~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 178 TYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 78999999 689999999999998875
No 25
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=9.8e-31 Score=188.65 Aligned_cols=150 Identities=31% Similarity=0.486 Sum_probs=132.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
..+||+++|++|||||||+++|.+..+.... .++.+.++....+...+..+.+.+||+||++++...+..+++.+|++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAF--VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCc--CCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 4689999999999999999999998876554 56666677777777888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
++|||++++++++.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|++++|++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 178 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER 178 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999988875 68999999999997532 237899999999999999999
Q ss_pred HHHHHHHh
Q psy17231 151 IGRQLILS 158 (189)
Q Consensus 151 i~~~i~~~ 158 (189)
+.+.+.+.
T Consensus 179 l~~~i~~~ 186 (189)
T 2gf9_A 179 LVDVICEK 186 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 26
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=5.5e-31 Score=190.68 Aligned_cols=151 Identities=21% Similarity=0.300 Sum_probs=130.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+...+ .+|++..+. .....++..+.+.+||+||++++...+..+++.+|+
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~--~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAY--VPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--CCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCcc--CCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 45799999999999999999999999875544 566664443 456778888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc-----------------CCc-eEEeeccCCCCHHH
Q psy17231 86 AILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------ISS-TYKTSCKTGEGVEE 146 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------~~~-~~~~Sa~~~~~i~~ 146 (189)
+++|||++++++|+.+ ..|+..+....+++|+++|+||+|+... ... ++++||++|.|+++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence 9999999999999997 7899888877788999999999997531 124 99999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy17231 147 MFADIGRQLILSN 159 (189)
Q Consensus 147 ~~~~i~~~i~~~~ 159 (189)
+|+++.+.+.+..
T Consensus 178 l~~~l~~~i~~~~ 190 (194)
T 3reg_A 178 VFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987654
No 27
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.98 E-value=2.4e-31 Score=195.82 Aligned_cols=152 Identities=18% Similarity=0.325 Sum_probs=128.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
++.+||+++|++|||||||+++|.+..+...+ .+|++.++ ...+..++..+.+.+||++|++++..++..+++.+++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETY--VPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSC--CCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCc--CCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 56799999999999999999999999886554 66766554 4556677778899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHH-HHHHHHHHHHhCCCCcEEEEeeccccccc---------------------------CC-ceEEe
Q psy17231 86 AILVFSLDNAASFHV-LSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------IS-STYKT 136 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~~-~~~~~ 136 (189)
+++|||++++++|+. +..|+..+....+++|+++|+||+|+... .. +|++|
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 181 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG 181 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999999 69999999988788999999999998541 23 79999
Q ss_pred eccCCCC-HHHHHHHHHHHHHHhhh
Q psy17231 137 SCKTGEG-VEEMFADIGRQLILSNR 160 (189)
Q Consensus 137 Sa~~~~~-i~~~~~~i~~~i~~~~~ 160 (189)
||++|.| ++++|+++++.+.+...
T Consensus 182 SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 182 SAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHC---
T ss_pred ccCCCcccHHHHHHHHHHHHhccCc
Confidence 9999998 99999999999876543
No 28
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=3.9e-31 Score=191.13 Aligned_cols=152 Identities=34% Similarity=0.521 Sum_probs=133.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+.... .++.+.++....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccC--CCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 45799999999999999999999998886554 6677777777788888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++++.+++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE 170 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 999999999999999999999887754 57999999999997421 23789999999999999999
Q ss_pred HHHHHHHHhh
Q psy17231 150 DIGRQLILSN 159 (189)
Q Consensus 150 ~i~~~i~~~~ 159 (189)
++.+.+.+..
T Consensus 171 ~l~~~~~~~~ 180 (195)
T 1x3s_A 171 ELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHTSG
T ss_pred HHHHHHHhhh
Confidence 9999987643
No 29
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.98 E-value=6.6e-31 Score=191.21 Aligned_cols=153 Identities=26% Similarity=0.330 Sum_probs=124.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.+||+++|++|||||||+++|.+..+...+ .+|++ +.....+..++..+.+.+||+||++++..++..+++.+|
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEY--IPTAF-DNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------CCSS-EEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccc-ceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 456899999999999999999999988765444 55655 333456677888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEE
Q psy17231 85 AAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYK 135 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~ 135 (189)
++++|||++++++++.+. .|+..+....+++|+++|+||+|+... . .+|++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 999999999999999996 799988887778999999999998541 1 27899
Q ss_pred eeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 136 TSCKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 136 ~Sa~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
|||++|.|++++|+++.+.+.+...
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999876643
No 30
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.98 E-value=9.5e-31 Score=184.35 Aligned_cols=150 Identities=29% Similarity=0.470 Sum_probs=125.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
+++.+||+++|++|+|||||+++|.+..+...+ .++.+.. ....+..++..+.+.+||+||++++...+..+++.++
T Consensus 1 S~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 77 (168)
T 1u8z_A 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 77 (168)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CTTCCEE-EEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCccCCCC--CCCcceE-EEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCC
Confidence 357899999999999999999999998875544 4454433 3445667888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~ 147 (189)
++++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 78 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence 9999999999999999999999988875 48999999999997532 237899999999999999
Q ss_pred HHHHHHHHHH
Q psy17231 148 FADIGRQLIL 157 (189)
Q Consensus 148 ~~~i~~~i~~ 157 (189)
|+++.+.+.+
T Consensus 158 ~~~l~~~i~~ 167 (168)
T 1u8z_A 158 FFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 31
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.98 E-value=1.8e-31 Score=190.27 Aligned_cols=153 Identities=25% Similarity=0.390 Sum_probs=130.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECC-eEEEEEEEeCCCccccccchHHHhcCC
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD-RSIQMQLWDTGGMERVASITSSYYKFA 83 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~ 83 (189)
.++.+||+++|++|||||||+++|.+..+...+ .+|++.++....+...+ ..+.+.+||+||++++...+..+++.+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 80 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQY--KQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGA 80 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHH--HHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTC
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCC--CCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhC
Confidence 567899999999999999999999988875433 56777777777777766 578999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhC---CCCc-EEEEeeccccccc---------------CCceEEeeccCCCCH
Q psy17231 84 EAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAK-IFLCGNNEQCHNL---------------ISSTYKTSCKTGEGV 144 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p-~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i 144 (189)
|++++|||++++++++.+..|+..+.... ...| +++|+||+|+... ..+++++||++|.|+
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 160 (178)
T 2hxs_A 81 QGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSV 160 (178)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCH
Confidence 99999999999999999999999887753 2455 8999999997531 237899999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy17231 145 EEMFADIGRQLILSN 159 (189)
Q Consensus 145 ~~~~~~i~~~i~~~~ 159 (189)
+++|+++.+.+.+..
T Consensus 161 ~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 161 FLCFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999886543
No 32
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.98 E-value=5.1e-31 Score=186.34 Aligned_cols=150 Identities=29% Similarity=0.514 Sum_probs=127.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
..+||+++|++|+|||||+++|.+..+.... .++.+.++....+..++..+.+.+||+||++++...+..+++.+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 79 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGI 79 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEE
Confidence 4689999999999999999999998876544 66666677777777788788999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
++|||++++.+++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|+++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 80 ILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988875 68999999999997321 2379999999999999999999
Q ss_pred HHHHHHh
Q psy17231 152 GRQLILS 158 (189)
Q Consensus 152 ~~~i~~~ 158 (189)
.+.+.+.
T Consensus 160 ~~~~~~~ 166 (170)
T 1g16_A 160 AKLIQEK 166 (170)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9988754
No 33
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.98 E-value=1.1e-30 Score=184.55 Aligned_cols=148 Identities=28% Similarity=0.502 Sum_probs=131.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|+|||||+++|.+..+.... .++.+.++........+....+.+||+||++++...+..+++.+|+
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 81 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNI--NPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA 81 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence 46799999999999999999999999876554 6677777777778888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++++.+++.+..|+..+.... +..|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 999999999999999999999998874 78999999999997432 23789999999999999999
Q ss_pred HHHHHH
Q psy17231 150 DIGRQL 155 (189)
Q Consensus 150 ~i~~~i 155 (189)
++.+.+
T Consensus 162 ~i~~~i 167 (170)
T 1z0j_A 162 EISRRI 167 (170)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998765
No 34
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.98 E-value=4.2e-31 Score=189.05 Aligned_cols=151 Identities=23% Similarity=0.292 Sum_probs=129.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.++.+.... .+|.+..+ ...+..++..+.+.+||+||++++...+..+++.+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSY--DPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCC--CTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence 45799999999999999999999988876555 56666555 6667788888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
+++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 160 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence 999999999999999999999987765 57999999999997421 2379999999999999999
Q ss_pred HHHHHHHHHhh
Q psy17231 149 ADIGRQLILSN 159 (189)
Q Consensus 149 ~~i~~~i~~~~ 159 (189)
+++.+.+.+..
T Consensus 161 ~~l~~~~~~~~ 171 (181)
T 3t5g_A 161 RRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHhc
Confidence 99999987654
No 35
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=4.7e-31 Score=190.98 Aligned_cols=148 Identities=23% Similarity=0.323 Sum_probs=127.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
+.+||+++|++|||||||+++|.+..+...+ .+|++..+ ...+..++..+.+.+||+||++++..++..+++.+|++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEY--VPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSC--CCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 5689999999999999999999998875544 55655333 44566777788999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEEee
Q psy17231 87 ILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYKTS 137 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~~S 137 (189)
++|||++++++|+.+. .|+..+....+++|+++|+||+|+... . .+++++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 9999999999999997 899998887778999999999998531 1 2799999
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q psy17231 138 CKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 138 a~~~~~i~~~~~~i~~~i~~ 157 (189)
|++|.|++++|+++.+.+..
T Consensus 174 a~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999988763
No 36
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.98 E-value=4.3e-31 Score=188.19 Aligned_cols=149 Identities=32% Similarity=0.566 Sum_probs=131.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
++++||+++|++|||||||+++|.+..+.... .++.+.++....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 45699999999999999999999988876554 6667777777888888888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++++.+++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999887764 58999999999997532 23789999999999999999
Q ss_pred HHHHHHH
Q psy17231 150 DIGRQLI 156 (189)
Q Consensus 150 ~i~~~i~ 156 (189)
++.+.+.
T Consensus 170 ~l~~~~~ 176 (179)
T 2y8e_A 170 RVAAALP 176 (179)
T ss_dssp HHHHTCC
T ss_pred HHHHHHh
Confidence 9987654
No 37
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=4.4e-31 Score=191.06 Aligned_cols=150 Identities=31% Similarity=0.484 Sum_probs=131.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+.... .++.+.++....+...+....+.+||+||++++...+..+++.+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNI--SPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTC--CCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCc--CCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 55799999999999999999999998875544 6677777777777777778899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ 178 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 999999999999999999999988875 58999999999997531 23789999999999999999
Q ss_pred HHHHHHHH
Q psy17231 150 DIGRQLIL 157 (189)
Q Consensus 150 ~i~~~i~~ 157 (189)
++.+.+.+
T Consensus 179 ~l~~~i~~ 186 (192)
T 2fg5_A 179 GISRQIPP 186 (192)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHHh
Confidence 99887643
No 38
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.98 E-value=9.7e-31 Score=186.68 Aligned_cols=148 Identities=22% Similarity=0.427 Sum_probs=123.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
.++.+||+++|++|||||||+++|.+..+.. + .+|++ +.....+..++..+.+.+||+||+++ ..+++.+|
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d 74 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-L--EKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD 74 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-C--SSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-c--CCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence 4678999999999999999999999988864 3 55665 34456677788889999999999876 46788899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeecccccc----c--------------CCceEEeeccCCC
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHN----L--------------ISSTYKTSCKTGE 142 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~----~--------------~~~~~~~Sa~~~~ 142 (189)
++++|||++++++|+.+..|+..+.... +++|+++|+||+|+.. . ..+++++||++|.
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL 154 (178)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence 9999999999999999999876665542 5799999999999721 0 2378999999999
Q ss_pred CHHHHHHHHHHHHHHhhhh
Q psy17231 143 GVEEMFADIGRQLILSNRS 161 (189)
Q Consensus 143 ~i~~~~~~i~~~i~~~~~~ 161 (189)
|++++|+++.+.+.+....
T Consensus 155 ~i~~lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVTLRKQ 173 (178)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 9999999999998876543
No 39
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.98 E-value=4.4e-31 Score=191.17 Aligned_cols=151 Identities=35% Similarity=0.568 Sum_probs=127.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
...+||+++|++|||||||+++|.+..+.... .++.+.++....+.+++..+.+.+||+||++++...+..+++.+|+
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCC--CCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 44689999999999999999999988876544 5666667777788888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc----------------CCceEEeeccCCCCHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
+++|||++++.+++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999998887765 57999999999997431 2378999999999999999
Q ss_pred HHHHHHHHHh
Q psy17231 149 ADIGRQLILS 158 (189)
Q Consensus 149 ~~i~~~i~~~ 158 (189)
+++.+.+.++
T Consensus 182 ~~l~~~i~~~ 191 (192)
T 2il1_A 182 LKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 40
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.98 E-value=1e-30 Score=188.59 Aligned_cols=149 Identities=23% Similarity=0.306 Sum_probs=123.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.+||+++|++|||||||+++|.+..+...+ .+|++..+ ......++..+.+.+||++|++++..+ ..+++.++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEY--DPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCC--CTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCccc--CCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 356799999999999999999999998876554 56666444 445667888899999999999988875 67899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeeccccccc---------------CCceEEeec-cCCCCH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNL---------------ISSTYKTSC-KTGEGV 144 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa-~~~~~i 144 (189)
++++|||++++++|+.+..|+..+.... .++|+++|+||+|+... ..+++++|| ++|.|+
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv 173 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV 173 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence 9999999999999999999999988763 58999999999997532 237999999 899999
Q ss_pred HHHHHHHHHHHHH
Q psy17231 145 EEMFADIGRQLIL 157 (189)
Q Consensus 145 ~~~~~~i~~~i~~ 157 (189)
+++|+++++.+.+
T Consensus 174 ~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 174 QHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 41
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.98 E-value=1e-30 Score=188.24 Aligned_cols=147 Identities=27% Similarity=0.497 Sum_probs=125.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA 83 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 83 (189)
.+++.+||+++|++|||||||++++.+..+...+ .+|. ..+...+.+++..+.+.+|||+|++++. +++.+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~--~~t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE--SPEG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC--CTTC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCCc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 3577899999999999999999999999886655 4453 3334677888888999999999998875 77889
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccc-----------------c-CCceEEeeccCCCC
Q psy17231 84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHN-----------------L-ISSTYKTSCKTGEG 143 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~-----------------~-~~~~~~~Sa~~~~~ 143 (189)
+++++|||++++++|+.+..|+..+.... .+.|+++|+||+|+.. . ..+|++|||++|.|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 99999999999999999999999998764 5799999999999731 1 14899999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy17231 144 VEEMFADIGRQLILSN 159 (189)
Q Consensus 144 i~~~~~~i~~~i~~~~ 159 (189)
++++|+++++.+.+.+
T Consensus 167 v~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 167 VERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987664
No 42
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.98 E-value=5.9e-31 Score=186.12 Aligned_cols=149 Identities=22% Similarity=0.306 Sum_probs=116.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-chHHHhcCCcEE
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-ITSSYYKFAEAA 86 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~ 86 (189)
.+||+++|++|||||||+++|.+..+.... .++.+.+.....+..++..+.+.+||+||++++.. ++..+++.+|++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~ 79 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH--EMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAF 79 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc--cCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEE
Confidence 579999999999999999999876665444 33334466677777888889999999999998876 777788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 159 (169)
T 3q85_A 80 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE 159 (169)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHH
Confidence 99999999999999999999998876 38999999999997522 23889999999999999999
Q ss_pred HHHHHHHHh
Q psy17231 150 DIGRQLILS 158 (189)
Q Consensus 150 ~i~~~i~~~ 158 (189)
++.+.+...
T Consensus 160 ~l~~~i~~~ 168 (169)
T 3q85_A 160 GAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999988754
No 43
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.98 E-value=5.7e-31 Score=191.78 Aligned_cols=153 Identities=31% Similarity=0.496 Sum_probs=126.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+...+ .++.+.++....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 100 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDS--NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 100 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccC--CCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence 44689999999999999999999988876544 5666667777778888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 180 (200)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999988765 68999999999997532 23689999999999999999
Q ss_pred HHHHHHHHhhh
Q psy17231 150 DIGRQLILSNR 160 (189)
Q Consensus 150 ~i~~~i~~~~~ 160 (189)
++.+.+.+...
T Consensus 181 ~l~~~i~~~~~ 191 (200)
T 2o52_A 181 KCARTILNKID 191 (200)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999876543
No 44
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.98 E-value=5.4e-31 Score=185.70 Aligned_cols=148 Identities=26% Similarity=0.393 Sum_probs=126.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
|+.+||+++|++|||||||+++|.+..+...+ .+|.+... ...+..++..+.+.+||+||++++...+..+++.+++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 77 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKY--DPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQG 77 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSC--CCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCE
Confidence 46799999999999999999999998876554 55655343 4556667778899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc----------------CCceEEeeccCCCCHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL----------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~----------------~~~~~~~Sa~~~~~i~~~ 147 (189)
+++|||++++++++.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|++++
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 78 FALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHH
Confidence 999999999999999999999887753 58999999999997431 347999999999999999
Q ss_pred HHHHHHHHH
Q psy17231 148 FADIGRQLI 156 (189)
Q Consensus 148 ~~~i~~~i~ 156 (189)
|+++.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988763
No 45
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=5e-32 Score=195.82 Aligned_cols=152 Identities=30% Similarity=0.463 Sum_probs=133.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+.... .++.+.++....+...+..+.+.+||+||++.+..++..+++.+|+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAF--VSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCE--EEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCccc--CCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 34689999999999999999999998876554 5666667777777777778899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999999998876 68999999999997432 23889999999999999999
Q ss_pred HHHHHHHHhh
Q psy17231 150 DIGRQLILSN 159 (189)
Q Consensus 150 ~i~~~i~~~~ 159 (189)
++.+.+.+..
T Consensus 179 ~l~~~i~~~~ 188 (191)
T 3dz8_A 179 RLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999987654
No 46
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.98 E-value=1.1e-30 Score=188.28 Aligned_cols=153 Identities=27% Similarity=0.434 Sum_probs=131.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeee-EEEEEECCe---------EEEEEEEeCCCccccccc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNF-NKEYKVDDR---------SIQMQLWDTGGMERVASI 75 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~ 75 (189)
.+.+||+++|++|||||||+++|.+..+.... .+|++.++. ...+..++. .+.+.+||+||++++...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKF--ITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCc--ccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 45699999999999999999999998876544 667776766 455566554 689999999999999999
Q ss_pred hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeec
Q psy17231 76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSC 138 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa 138 (189)
+..+++.+|++++|||++++.+++.+..|+..+.... .++|+++|+||+|+... ..+++++||
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 9999999999999999999999999999999988765 58999999999997541 237999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhh
Q psy17231 139 KTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 139 ~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
++|.|++++|+++.+.+.+...
T Consensus 167 ~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999876543
No 47
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.98 E-value=5.8e-31 Score=189.16 Aligned_cols=151 Identities=19% Similarity=0.330 Sum_probs=128.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA 83 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 83 (189)
...+.+||+++|++|||||||+++|.+..+...+ .+|.+..+ ...+..++..+.+.+||+||+++|..++..+++.+
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 79 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENY--VPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 79 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCC
Confidence 3567899999999999999999999998886544 56665444 44566677788999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceE
Q psy17231 84 EAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTY 134 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~ 134 (189)
+++++|||++++++|+.+ ..|+..+....++.|+++|+||+|+... . .+|+
T Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 159 (184)
T 1m7b_A 80 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI 159 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEE
Confidence 999999999999999999 7899988887678999999999998630 1 3799
Q ss_pred Eeecc-CCCCHHHHHHHHHHHHHH
Q psy17231 135 KTSCK-TGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 135 ~~Sa~-~~~~i~~~~~~i~~~i~~ 157 (189)
+|||+ +|.|++++|+++.+.+.+
T Consensus 160 e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 160 ECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp ECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EeeecCCCcCHHHHHHHHHHHHhc
Confidence 99999 689999999999998864
No 48
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.4e-30 Score=185.91 Aligned_cols=154 Identities=35% Similarity=0.533 Sum_probs=125.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.+||+++|++|||||||+++|.+..+... .+.++++.++....+..++..+.+.+||+||++++...+..+++.+|
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 35579999999999999999999999887532 23567777777777788888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
++++|||++++.+++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999988876 68999999999997531 2389999999999999999
Q ss_pred HHHHHHHHHhh
Q psy17231 149 ADIGRQLILSN 159 (189)
Q Consensus 149 ~~i~~~i~~~~ 159 (189)
+++.+.+.+..
T Consensus 166 ~~l~~~~~~~~ 176 (180)
T 2g6b_A 166 TAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 99999886543
No 49
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.98 E-value=1.2e-30 Score=190.06 Aligned_cols=152 Identities=24% Similarity=0.401 Sum_probs=129.1
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcC
Q psy17231 3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKF 82 (189)
Q Consensus 3 ~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 82 (189)
+|+...+||+++|++|||||||+++|.+..+...+ .++.+.++. ..+..++..+.+.+||+||++++...+..+++.
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 96 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPD 96 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC--CCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTT
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCccc--CCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCC
Confidence 45667899999999999999999999998886554 556554443 346678888899999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc---------------------------CC-ce
Q psy17231 83 AEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------IS-ST 133 (189)
Q Consensus 83 ~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~~-~~ 133 (189)
+|++++|||++++++++.+ ..|+..+....++.|+++|+||+|+... .. ++
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (201)
T 2gco_A 97 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 176 (201)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence 9999999999999999999 7888888877678999999999997532 11 68
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHH
Q psy17231 134 YKTSCKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 134 ~~~Sa~~~~~i~~~~~~i~~~i~~ 157 (189)
+++||++|.|++++|+++.+.+.+
T Consensus 177 ~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 177 LECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999988753
No 50
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.98 E-value=8.2e-31 Score=187.97 Aligned_cols=151 Identities=24% Similarity=0.383 Sum_probs=129.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
.++.+||+++|++|||||||+++|.++.+...+ .+|.+ +........++..+.+.+||+||++++...+..+++.+|
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 78 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD 78 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSC--CCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCc--CCccc-ceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCc
Confidence 467899999999999999999999988876554 45554 333455677888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEE
Q psy17231 85 AAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYK 135 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~ 135 (189)
++++|||++++.+++.+. .|+..+....++.|+++|+||+|+... . .++++
T Consensus 79 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 158 (186)
T 1mh1_A 79 VSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 158 (186)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 999999999999999997 799888887678999999999997531 1 27999
Q ss_pred eeccCCCCHHHHHHHHHHHHHHh
Q psy17231 136 TSCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 136 ~Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
+||++|.|++++|+++.+.+.+.
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 159 CSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHHSCC
T ss_pred ecCCCccCHHHHHHHHHHHHhcc
Confidence 99999999999999999988644
No 51
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.98 E-value=3.5e-30 Score=185.12 Aligned_cols=153 Identities=25% Similarity=0.401 Sum_probs=129.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+++||+++|++|||||||+++|.+..+.... .++.+ +........++..+.+.+||+||++++..++..+++.+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEY--DPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 78 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCC--CTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 45799999999999999999999988875554 44443 5555667778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++++++++.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 79 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999988864 58999999999997532 23899999999999999999
Q ss_pred HHHHHHHHhhhh
Q psy17231 150 DIGRQLILSNRS 161 (189)
Q Consensus 150 ~i~~~i~~~~~~ 161 (189)
++.+.+.+....
T Consensus 159 ~l~~~~~~~~~~ 170 (189)
T 4dsu_A 159 TLVREIRKHKEK 170 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhh
Confidence 999998766544
No 52
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=4.3e-31 Score=192.15 Aligned_cols=149 Identities=31% Similarity=0.462 Sum_probs=122.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+.... .++.+.++....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENI--SATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccC--CCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 45799999999999999999999998875544 6677777777778888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeecccccc--------c-------------CCceEEeeccCCCC
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN--------L-------------ISSTYKTSCKTGEG 143 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~--------~-------------~~~~~~~Sa~~~~~ 143 (189)
+++|||++++.+++.+..|+..+.... .++|+++|+||+|+.. . ..+++++||++|.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 999999999999999999999887765 5799999999999752 1 13689999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17231 144 VEEMFADIGRQLI 156 (189)
Q Consensus 144 i~~~~~~i~~~i~ 156 (189)
++++|+++.+.+.
T Consensus 184 v~el~~~l~~~i~ 196 (199)
T 2p5s_A 184 IVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 53
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=4.6e-31 Score=191.67 Aligned_cols=152 Identities=22% Similarity=0.295 Sum_probs=126.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-chHHHhcCCc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS-ITSSYYKFAE 84 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~ 84 (189)
.+.+||+++|++|||||||+++|.+....... .++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++.++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH--EPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGG--TTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccC--CCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 45799999999999999999999754432222 33444566666777888889999999999988765 7788899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~ 147 (189)
++++|||++++++|+.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 9999999999999999999999988765 48999999999997531 237999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy17231 148 FADIGRQLILSN 159 (189)
Q Consensus 148 ~~~i~~~i~~~~ 159 (189)
|+++++.+.+..
T Consensus 179 f~~l~~~i~~~~ 190 (195)
T 3cbq_A 179 FEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 999999886544
No 54
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=8.9e-31 Score=184.68 Aligned_cols=148 Identities=22% Similarity=0.279 Sum_probs=106.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
+.+||+++|++|||||||+++|.+...... .++.+... ......++..+.+.+||+||++.+..++..+++.++++
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 76 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPE---AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAY 76 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-------------CEE-EEEEEETTEEEEEEEEECC---------------CCEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCC---CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEE
Confidence 358999999999999999999986655322 33334333 45567788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
++|||++++++|+.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 77 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 77 VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 156 (166)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Confidence 99999999999999999999988764 68999999999997532 23789999999999999999
Q ss_pred HHHHHHHHh
Q psy17231 150 DIGRQLILS 158 (189)
Q Consensus 150 ~i~~~i~~~ 158 (189)
++.+.+.+.
T Consensus 157 ~l~~~~~~~ 165 (166)
T 3q72_A 157 GVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988754
No 55
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=1.1e-30 Score=188.34 Aligned_cols=150 Identities=29% Similarity=0.501 Sum_probs=128.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc-cchHHHhcCC
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA-SITSSYYKFA 83 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~ 83 (189)
.++.+||+++|++|||||||+++|.+..+.... .++++.++....+..++..+.+.+||+||++++. .++..+++.+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC--CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 356799999999999999999999998886655 6677777777888888888999999999999988 7889999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCC---CC
Q psy17231 84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTG---EG 143 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~---~~ 143 (189)
|++++|||++++.+++.+..|+..+.... .++|+++|+||+|+... ..+++++||++| .|
T Consensus 95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~ 174 (189)
T 1z06_A 95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH 174 (189)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence 99999999999999999999999998874 68999999999997432 237999999999 99
Q ss_pred HHHHHHHHHHHHH
Q psy17231 144 VEEMFADIGRQLI 156 (189)
Q Consensus 144 i~~~~~~i~~~i~ 156 (189)
++++|+++.+.+.
T Consensus 175 i~~l~~~l~~~i~ 187 (189)
T 1z06_A 175 VEAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=2.3e-30 Score=185.69 Aligned_cols=153 Identities=29% Similarity=0.459 Sum_probs=129.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
.++.+||+++|++|||||||+++|.+..+...+ .++.+.. ....+..++..+.+.+||+||++++..++..+++.++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcC--CCccceE-EEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 467899999999999999999999998875544 4454433 3455667787889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~ 147 (189)
++++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 171 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence 9999999999999999999999988875 38999999999997532 237899999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy17231 148 FADIGRQLILSNR 160 (189)
Q Consensus 148 ~~~i~~~i~~~~~ 160 (189)
|+++.+.+.+.+.
T Consensus 172 ~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 172 FFDLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999999876543
No 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=2.1e-30 Score=182.43 Aligned_cols=149 Identities=34% Similarity=0.456 Sum_probs=128.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
|+++||+++|++|+|||||++++.++.+...+ .++.+ +.....+..++....+.+||+||++++..++..+++.+++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~ 77 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKY--DPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQG 77 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccC--CCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 46799999999999999999999998876554 44544 3345667778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
+++|||++++++++.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|++++|
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 157 (167)
T 1kao_A 78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157 (167)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHH
Confidence 999999999999999999999888764 58999999999996432 2379999999999999999
Q ss_pred HHHHHHHHH
Q psy17231 149 ADIGRQLIL 157 (189)
Q Consensus 149 ~~i~~~i~~ 157 (189)
+++.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (167)
T 1kao_A 158 AEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988753
No 58
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.7e-31 Score=193.58 Aligned_cols=154 Identities=30% Similarity=0.490 Sum_probs=127.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
..+||+++|++|||||||+++|.+..+...+ .++.+.++....+..++..+.+.+||+||++++..++..+++.++++
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS--KSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 4689999999999999999999998886554 56777777777788888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
++|||++++.+|+.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|++
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 169 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE 169 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988774 57999999999997532 237899999999999999999
Q ss_pred HHHHHHHhhhhh
Q psy17231 151 IGRQLILSNRSR 162 (189)
Q Consensus 151 i~~~i~~~~~~~ 162 (189)
+.+.+.+.....
T Consensus 170 l~~~i~~~~~~~ 181 (223)
T 3cpj_B 170 LINTIYQKVSKH 181 (223)
T ss_dssp HHHHHTTCC---
T ss_pred HHHHHHHHhhhc
Confidence 999998765543
No 59
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=187.90 Aligned_cols=152 Identities=29% Similarity=0.466 Sum_probs=131.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
.++.++|+++|++|||||||+++|.+..+...+ .+|.+.. ....+..++..+.+.+||+||++++..++..+++.++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 87 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 87 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccceE-EEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence 356799999999999999999999998875544 5555433 3455677888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~ 147 (189)
++++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999999998875 48999999999997542 237899999999999999
Q ss_pred HHHHHHHHHHhh
Q psy17231 148 FADIGRQLILSN 159 (189)
Q Consensus 148 ~~~i~~~i~~~~ 159 (189)
|+++.+.+.+..
T Consensus 168 ~~~l~~~i~~~~ 179 (206)
T 2bov_A 168 FFDLMREIRARK 179 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 999999988754
No 60
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=6e-31 Score=191.65 Aligned_cols=153 Identities=19% Similarity=0.270 Sum_probs=125.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+...+ .+|.+..+ ......++..+.+.+||+||++++...+..+++.+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY--DPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC--CCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC--CCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 46799999999999999999999999886554 56665444 5555666667889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
+++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIF 178 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999999987764 57999999999997532 2378999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy17231 149 ADIGRQLILSNRS 161 (189)
Q Consensus 149 ~~i~~~i~~~~~~ 161 (189)
+++.+.+.+....
T Consensus 179 ~~l~~~i~~~~~~ 191 (201)
T 3oes_A 179 TKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHhhhhh
Confidence 9999999876544
No 61
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=8e-31 Score=192.33 Aligned_cols=153 Identities=24% Similarity=0.330 Sum_probs=128.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|....+...+ .+|++..+ ...+..++..+.+.+||+||++++..++..+++.+|+
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY--IPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccC--CCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 56799999999999999999999998875544 56665333 4556677778899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc-----------------------C-CceEEeeccC
Q psy17231 86 AILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL-----------------------I-SSTYKTSCKT 140 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------------~-~~~~~~Sa~~ 140 (189)
+++|||++++++|+.+. .|+..+....++.|+++|+||+|+... . .+|+++||++
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 99999999999999996 899998887778999999999987431 1 3899999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhh
Q psy17231 141 GEGVEEMFADIGRQLILSNRS 161 (189)
Q Consensus 141 ~~~i~~~~~~i~~~i~~~~~~ 161 (189)
|.|++++|+++++.+.+...+
T Consensus 164 g~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC---
T ss_pred CCCHHHHHHHHHHHHhhhhhh
Confidence 999999999999999876543
No 62
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=2.2e-31 Score=196.02 Aligned_cols=156 Identities=27% Similarity=0.429 Sum_probs=131.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe----------EEEEEEEeCCCccccccc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR----------SIQMQLWDTGGMERVASI 75 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~ 75 (189)
.+.+||+++|++|||||||+++|.+..+.... .+|++.++....+.+++. .+.+.+||+||++++...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKF--ITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEE--EEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCC--CCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 44689999999999999999999988875433 667776776666666554 688999999999999999
Q ss_pred hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeec
Q psy17231 76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSC 138 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa 138 (189)
+..+++.+|++++|||++++.+++.+..|+..+.... .++|+++|+||+|+... ..+++++||
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence 9999999999999999999999999999998876654 57999999999997532 237999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhhhhh
Q psy17231 139 KTGEGVEEMFADIGRQLILSNRSRL 163 (189)
Q Consensus 139 ~~~~~i~~~~~~i~~~i~~~~~~~~ 163 (189)
++|.|++++|+++.+.+.+......
T Consensus 181 ~~g~gi~~l~~~l~~~i~~~~~~~~ 205 (217)
T 2f7s_A 181 ATGQNVEKAVETLLDLIMKRMEQCV 205 (217)
T ss_dssp TTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999887654433
No 63
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2e-30 Score=189.81 Aligned_cols=152 Identities=23% Similarity=0.396 Sum_probs=126.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
.+.++||+++|++|||||||+++|.+..+...+ .++.+..+. ..+..++..+.+.+||+||++++...+..+++.+|
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVY--VPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCC
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcC--CCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCC
Confidence 466789999999999999999999998876544 555554443 34667788889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHH-HHHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEE
Q psy17231 85 AAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYK 135 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~ 135 (189)
++++|||++++++++.+ ..|+..+....++.|+++|+||+|+... . .++++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (207)
T 2fv8_A 99 VILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE 178 (207)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999 7898888877678999999999998542 1 16899
Q ss_pred eeccCCCCHHHHHHHHHHHHHHhh
Q psy17231 136 TSCKTGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 136 ~Sa~~~~~i~~~~~~i~~~i~~~~ 159 (189)
+||++|.|++++|+++.+.+.+..
T Consensus 179 ~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 179 CSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999887543
No 64
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=7e-30 Score=185.44 Aligned_cols=151 Identities=29% Similarity=0.431 Sum_probs=129.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeE---------------------------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS--------------------------- 58 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------------------- 58 (189)
.+.+||+++|++|+|||||+++|.+..+.... .+|++.++....+..++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENT--NTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSCEEEEEEEETTC-----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCc--CccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence 56899999999999999999999999876544 6677767776666666544
Q ss_pred ----------EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231 59 ----------IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN 128 (189)
Q Consensus 59 ----------~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~ 128 (189)
..+.+||+||++++...+..+++.+|++++|||++++.+++.+..|+..+.... ..|+++|+||+|...
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~piilv~NK~D~~~ 161 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-NYIIILVANKIDKNK 161 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CCEEEEEEECTTCC-
T ss_pred cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-CCcEEEEEECCCccc
Confidence 789999999999999999999999999999999999999999999999988875 499999999999421
Q ss_pred c--------------CCceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231 129 L--------------ISSTYKTSCKTGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 129 ~--------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 159 (189)
. ..+++++||++|.|++++|+++.+.+.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 1 237899999999999999999999887653
No 65
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=4.9e-31 Score=194.77 Aligned_cols=154 Identities=25% Similarity=0.453 Sum_probs=135.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.+||+++|++|||||||+++|..+.+...+ .++.+.+........++..+.+.+||+||++.+..++..+++.++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEE--ETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 356799999999999999999998776664433 667777888888888888899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
++++|||++++.+++.+..|+..+....+++|+++|+||+|+... ..+++++||++|.|++++|+++
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 169 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 169 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999999999988778999999999997532 2379999999999999999999
Q ss_pred HHHHHHhhh
Q psy17231 152 GRQLILSNR 160 (189)
Q Consensus 152 ~~~i~~~~~ 160 (189)
.+.+.....
T Consensus 170 ~~~l~~~~~ 178 (221)
T 3gj0_A 170 ARKLIGDPN 178 (221)
T ss_dssp HHHHHTCTT
T ss_pred HHHHHhCcc
Confidence 999876643
No 66
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2e-30 Score=190.54 Aligned_cols=152 Identities=27% Similarity=0.319 Sum_probs=122.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-cccchHHHhcCCc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER-VASITSSYYKFAE 84 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~ 84 (189)
.+.+||+++|++|||||||+++|.+........ .++++.++....+.+++..+.+.+|||+|++. +..+...+++.++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 456999999999999999999998644321111 23456677777778888888999999999876 4456666788899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~ 147 (189)
++++|||++++++|+.+..|+..+.... .++|+++|+||+|+... ..+|++|||++|.||+++
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~el 193 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 193 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999999998877542 57999999999997531 137899999999999999
Q ss_pred HHHHHHHHHHh
Q psy17231 148 FADIGRQLILS 158 (189)
Q Consensus 148 ~~~i~~~i~~~ 158 (189)
|+++++.+...
T Consensus 194 f~~l~~~i~~~ 204 (211)
T 2g3y_A 194 FEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988644
No 67
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=4.5e-30 Score=188.19 Aligned_cols=152 Identities=30% Similarity=0.496 Sum_probs=132.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.++|+++|++|||||||+++|.+..+.... .++++.++....+.+++..+.+.+||+||++++...+..+++.+|+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSS--SCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 34689999999999999999999998876544 6666767777778888888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
+++|||++++.+++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|++
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999999888765 47999999999997321 237999999999999999999
Q ss_pred HHHHHHHhh
Q psy17231 151 IGRQLILSN 159 (189)
Q Consensus 151 i~~~i~~~~ 159 (189)
+.+.+.+..
T Consensus 176 l~~~~~~~~ 184 (213)
T 3cph_A 176 LAKLIQEKI 184 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
No 68
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=191.05 Aligned_cols=151 Identities=21% Similarity=0.387 Sum_probs=110.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+...+ .+|.+ +.....+..++..+.+.+||+||++++..++..+++.+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 108 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESY--TPTVF-ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASV 108 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCC-EEEEEEEEETTEEEEEEEEEC---------------CEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCccc-eeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCE
Confidence 45799999999999999999999988775544 44544 3335566778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEEe
Q psy17231 86 AILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYKT 136 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~~ 136 (189)
+++|||++++++|+.+. .|+..+....+++|+++|+||+|+... . .++++|
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999996 799988887778999999999997532 1 278999
Q ss_pred eccCCCCHHHHHHHHHHHHHHhh
Q psy17231 137 SCKTGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 137 Sa~~~~~i~~~~~~i~~~i~~~~ 159 (189)
||++|.|++++|+++.+.+.+..
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999987654
No 69
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=4.2e-31 Score=191.16 Aligned_cols=154 Identities=15% Similarity=0.158 Sum_probs=125.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC---------CCcccceeeeeEEEE-EECCeEEEEEEEeCCCccccccc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSS---------SRKSTLGLDNFNKEY-KVDDRSIQMQLWDTGGMERVASI 75 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~---------~~~~t~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~ 75 (189)
.+.+||+++|++|||||||++.+.+. +...+ ...+|++.++....+ ..++..+.+.+|||||++++...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 45799999999999999999766644 33221 124566666655544 56677889999999999999999
Q ss_pred hHHHhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CC-ceEE
Q psy17231 76 TSSYYKFAEAAILVFSLD------NAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------IS-STYK 135 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~-~~~~ 135 (189)
+..+++.+|++++|||++ +.++|+.+..|+..+.....++|+++|+||+|+... .. ++++
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLE 170 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEE
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEE
Confidence 999999999999999999 667888888998887544478999999999997532 23 8999
Q ss_pred eeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 136 TSCKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 136 ~Sa~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
+||++|.|++++|+++.+.+.+...
T Consensus 171 ~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 171 AVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp CBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred EecCCCcCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999887643
No 70
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.5e-30 Score=185.81 Aligned_cols=150 Identities=25% Similarity=0.398 Sum_probs=127.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+...+ .+|.+... ...+..++..+.+.+||+||+++ ...+..+++.+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY--DPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 56799999999999999999999998886554 55555333 45567788889999999999988 7778889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCC-CHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGE-GVEEM 147 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~-~i~~~ 147 (189)
+++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|. |++++
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI 181 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence 999999999999999999999888753 58999999999997542 2378999999999 99999
Q ss_pred HHHHHHHHHHhh
Q psy17231 148 FADIGRQLILSN 159 (189)
Q Consensus 148 ~~~i~~~i~~~~ 159 (189)
|+++.+.+.+.+
T Consensus 182 ~~~l~~~i~~~~ 193 (196)
T 2atv_A 182 FYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999987654
No 71
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=1.9e-30 Score=189.58 Aligned_cols=148 Identities=24% Similarity=0.396 Sum_probs=124.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
.++.+||+++|++|||||||++++..+.+.... .++.+ +.....+..++..+.+.+||+||++++...+..+++.+|
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTD 103 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-C--CCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc--CCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence 466899999999999999999999998876554 45544 445556677788889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc----------------------------CCceEE
Q psy17231 85 AAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL----------------------------ISSTYK 135 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------------------~~~~~~ 135 (189)
++++|||++++++++.+. .|+..+....+++|+++|+||+|+... ..++++
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 4gzl_A 104 VFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence 999999999999999996 899888887778999999999997532 125999
Q ss_pred eeccCCCCHHHHHHHHHHHH
Q psy17231 136 TSCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 136 ~Sa~~~~~i~~~~~~i~~~i 155 (189)
+||++|.|++++|+++.+.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCTTTCTTHHHHHHHHHHTT
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998754
No 72
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=4e-31 Score=189.09 Aligned_cols=149 Identities=26% Similarity=0.352 Sum_probs=113.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
.++.+||+++|++|+|||||++++....+...+ .+|++..+ ...+..++..+.+.+||+||++++...+..+++.+|
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 81 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY--VPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC------------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence 467899999999999999999999988875444 45554333 223344556678899999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc-------------------------C-CceEEee
Q psy17231 85 AAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL-------------------------I-SSTYKTS 137 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------------~-~~~~~~S 137 (189)
++++|||++++++++.+. .|+..+....++.|+++|+||+|+... . .+++++|
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 161 (182)
T 3bwd_D 82 VFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECS 161 (182)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEE
Confidence 999999999999999997 799988887678999999999886321 2 2799999
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q psy17231 138 CKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 138 a~~~~~i~~~~~~i~~~i~ 156 (189)
|++|.|++++|+++.+.+.
T Consensus 162 a~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 162 SKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TTTCTTHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998774
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=2.8e-29 Score=176.35 Aligned_cols=149 Identities=26% Similarity=0.427 Sum_probs=126.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
|+.+||+++|++|+|||||++++.+..+.... .++.+ +.....+..++..+.+.+||+||++++...+..++..+++
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 77 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEC--DPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCC--CTTCC-EEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCcccc--CCccc-eEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCE
Confidence 46789999999999999999999988876544 44444 3334556677878899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 999999999999999999999888765 37999999999996531 23899999999999999999
Q ss_pred HHHHHHHH
Q psy17231 150 DIGRQLIL 157 (189)
Q Consensus 150 ~i~~~i~~ 157 (189)
++.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99988753
No 74
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=2.5e-29 Score=182.12 Aligned_cols=153 Identities=27% Similarity=0.334 Sum_probs=122.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-cccchHHHhcCCc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER-VASITSSYYKFAE 84 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~ 84 (189)
.+.+||+++|++|||||||+++|.+........ .++++.+.....+.+++..+.+.+||++|.+. +..+...+++.++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 567999999999999999999998643311111 23456676677778888888999999999876 4557778888999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~ 147 (189)
++++|||++++++|+.+..|+..+.... .++|+++|+||+|+... ..+|++|||++|.||+++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999998887653 57999999999997421 237899999999999999
Q ss_pred HHHHHHHHHHhh
Q psy17231 148 FADIGRQLILSN 159 (189)
Q Consensus 148 ~~~i~~~i~~~~ 159 (189)
|+++.+.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886554
No 75
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=3.7e-29 Score=180.32 Aligned_cols=153 Identities=25% Similarity=0.387 Sum_probs=119.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
.++.+||+++|++|||||||+++|.+..+.... .++.+ ......+..++..+.+.+||+||++++...+..+++.++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEY--DPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 94 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCC--CTTCC-EEEEEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCcccc--CCccc-eEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence 367899999999999999999999988876544 44444 333456677788889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
++++|||++++.+++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|
T Consensus 95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999887764 47999999999996531 2389999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy17231 149 ADIGRQLILSNR 160 (189)
Q Consensus 149 ~~i~~~i~~~~~ 160 (189)
+++.+.+.+.+.
T Consensus 175 ~~l~~~~~~~~~ 186 (190)
T 3con_A 175 YTLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=7.8e-31 Score=191.33 Aligned_cols=155 Identities=21% Similarity=0.290 Sum_probs=98.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCcccceeeeeEEEEEECCe--EEEEEEEeCCCccccccchHHHhc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD--TFISSSSRKSTLGLDNFNKEYKVDDR--SIQMQLWDTGGMERVASITSSYYK 81 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~ 81 (189)
.+.++|+++|++|||||||+++|.+. .+...+ .+|++.++....+.+++. .+.+.+||+||++++...+..+++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDY--AMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp EEEEEEEEC------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCC--CCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 34589999999999999999999988 554333 667776777777788776 789999999999999989999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC----CCcEEEEeecccccc-c---------------CCceEEeeccC-
Q psy17231 82 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAE----NAKIFLCGNNEQCHN-L---------------ISSTYKTSCKT- 140 (189)
Q Consensus 82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ivv~nK~d~~~-~---------------~~~~~~~Sa~~- 140 (189)
.+|++++|||++++.+|+.+..|+..+..... ++|+++|+||+|+.. . ..+++++||++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 175 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPP 175 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC---
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCC
Confidence 99999999999999999999999999988753 899999999999865 1 23789999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhhh
Q psy17231 141 GEGVEEMFADIGRQLILSNRSR 162 (189)
Q Consensus 141 ~~~i~~~~~~i~~~i~~~~~~~ 162 (189)
|.|++++|+++.+.+.+.....
T Consensus 176 ~~gi~~l~~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 176 GKDADAPFLSIATTFYRNYEDK 197 (208)
T ss_dssp ----CHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999888765543
No 77
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=5e-30 Score=185.98 Aligned_cols=150 Identities=15% Similarity=0.290 Sum_probs=122.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFIS-SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
.+.+||+++|++|||||||+++|.+..+.. .+ .+|++.... .+. ...+.+.+||+||++++...+..+++.+|
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~--~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 88 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI--TATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYDNID 88 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CC--CCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccc--ccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence 557899999999999999999999988765 33 566663332 333 33478999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC---------CCCcEEEEeeccccccc-------------------CCceEEe
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA---------ENAKIFLCGNNEQCHNL-------------------ISSTYKT 136 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------~~~p~ivv~nK~d~~~~-------------------~~~~~~~ 136 (189)
++++|||++++++|+.+..|+..+.... .++|+++|+||+|+... ..++++|
T Consensus 89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (199)
T 4bas_A 89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFAS 168 (199)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEEC
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEe
Confidence 9999999999999999999998887652 27999999999986533 1257999
Q ss_pred eccCCCCHHHHHHHHHHHHHHhhhh
Q psy17231 137 SCKTGEGVEEMFADIGRQLILSNRS 161 (189)
Q Consensus 137 Sa~~~~~i~~~~~~i~~~i~~~~~~ 161 (189)
||++|.|++++|+++.+.+.+....
T Consensus 169 Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 169 NGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred eCCCccCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998876443
No 78
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.7e-29 Score=178.83 Aligned_cols=146 Identities=19% Similarity=0.378 Sum_probs=122.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.++|+++|++|||||||+++|.+..+.. +.+|++.. ...+.++ ...+.+||+||++++...+..+++.+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 77 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT---TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDA 77 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC---CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC---cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCE
Confidence 457999999999999999999999888743 25566543 3344444 4688999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~ 145 (189)
+++|||++++++|+.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++
T Consensus 78 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 78 VIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 999999999999999999998887653 58999999999997532 1168999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy17231 146 EMFADIGRQLILS 158 (189)
Q Consensus 146 ~~~~~i~~~i~~~ 158 (189)
++|+++.+.+.++
T Consensus 158 ~l~~~l~~~i~~~ 170 (171)
T 1upt_A 158 EAMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988654
No 79
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-29 Score=179.70 Aligned_cols=147 Identities=26% Similarity=0.286 Sum_probs=123.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
+.+||+++|++|||||||+++|.+..+.... .++.+... ......++..+.+.+||+||++++...+..+++.+|++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 78 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESY--IPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAF 78 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSC--CCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEE
Confidence 4689999999999999999999988775444 45554333 34456677778999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
++|||++++++++.+..|+..+.... ++.|+++|+||+|+... ..+++++||++|.|++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (172)
T 2erx_A 79 ILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158 (172)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHH
Confidence 99999999999999999988877653 57999999999997432 2378999999999999999
Q ss_pred HHHHHHHH
Q psy17231 149 ADIGRQLI 156 (189)
Q Consensus 149 ~~i~~~i~ 156 (189)
+++.+.+.
T Consensus 159 ~~l~~~~~ 166 (172)
T 2erx_A 159 QELLNLEK 166 (172)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHh
Confidence 99987664
No 80
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=5.6e-30 Score=186.33 Aligned_cols=144 Identities=16% Similarity=0.220 Sum_probs=114.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA 83 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 83 (189)
...+.++|+++|++|||||||+++|.+..+.. +.+|++.+ ...+.+++ +.+.+|||||++++..++..+++.+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~---~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ---HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAI 93 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCc---cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcC
Confidence 34678899999999999999999999877642 24565543 34555665 6889999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------------------CC
Q psy17231 84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------------------IS 131 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------------------~~ 131 (189)
|++++|||++++++|+.+..|+..+.... .++|+++|+||+|+.+. ..
T Consensus 94 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (198)
T 1f6b_A 94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL 173 (198)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceE
Confidence 99999999999999999999999887652 68999999999997421 12
Q ss_pred ceEEeeccCCCCHHHHHHHHHHH
Q psy17231 132 STYKTSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 132 ~~~~~Sa~~~~~i~~~~~~i~~~ 154 (189)
++++|||++|.|++++|+++.+.
T Consensus 174 ~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 174 EVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EEEECBTTTTBSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999998764
No 81
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.4e-29 Score=183.01 Aligned_cols=144 Identities=16% Similarity=0.261 Sum_probs=118.0
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA 83 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 83 (189)
...+.+||+++|++|||||||++++.+..+.. +.+|++.. ...+..++ +.+.+||+||++++...+..+++.+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~---~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT---LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEV 91 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCCC---CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTC
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCCc---cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence 34567899999999999999999999888642 35565543 44555665 7889999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc-------------------------CCceEEe
Q psy17231 84 EAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL-------------------------ISSTYKT 136 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~-------------------------~~~~~~~ 136 (189)
|++++|||++++++|+++..|+..+.+.. .++|+++|+||+|+... ..++++|
T Consensus 92 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T 1m2o_B 92 NGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMC 171 (190)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEEC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEe
Confidence 99999999999999999999999887642 68999999999987431 1258999
Q ss_pred eccCCCCHHHHHHHHHHH
Q psy17231 137 SCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 137 Sa~~~~~i~~~~~~i~~~ 154 (189)
||++|.|++++|+++.+.
T Consensus 172 Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 172 SVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp BTTTTBSHHHHHHHHHTT
T ss_pred ECCcCCCHHHHHHHHHhh
Confidence 999999999999998753
No 82
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=6.2e-30 Score=184.46 Aligned_cols=146 Identities=17% Similarity=0.284 Sum_probs=122.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+...+ .+|++.+... +... .+.+.+||+||++++...+..+++.+|+
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDM--IPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSA 93 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCcc--CCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCE
Confidence 45799999999999999999999998876444 5666655432 3333 4688999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~ 145 (189)
+++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++
T Consensus 94 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 94 IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 999999999999999999998887642 68999999999997532 1258999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17231 146 EMFADIGRQLIL 157 (189)
Q Consensus 146 ~~~~~i~~~i~~ 157 (189)
++|+++.+.+.+
T Consensus 174 ~l~~~l~~~~~~ 185 (188)
T 1zd9_A 174 ITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 83
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=6.6e-30 Score=183.39 Aligned_cols=147 Identities=20% Similarity=0.350 Sum_probs=119.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.++|+++|++|||||||+++|.+..+. ...+|.+.. ...+..+ .+.+.+||+||++.+...+..+++.+|
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~---~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 85 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS---HITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTD 85 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCCE---EEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCCC---cccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 357899999999999999999999977542 235666533 3344444 368899999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGV 144 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i 144 (189)
++++|||++++++|+.+..|+..+.... .++|+++|+||+|+... ..++++|||++|.|+
T Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence 9999999999999999999998876542 58999999999997532 125899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy17231 145 EEMFADIGRQLILS 158 (189)
Q Consensus 145 ~~~~~~i~~~i~~~ 158 (189)
+++|+++.+.+.+.
T Consensus 166 ~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 166 QDGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998877543
No 84
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=6.9e-30 Score=188.08 Aligned_cols=154 Identities=25% Similarity=0.362 Sum_probs=128.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
...+||+++|++|||||||+++|.+..+.... .++.+........... +..+.+.+||+||++.+...+..++..+|
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNY--NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEE--ETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 45799999999999999999999988775433 5566555555555443 33488999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 9999999999999999999999988775 45999999999996532 2379999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy17231 149 ADIGRQLILSNRS 161 (189)
Q Consensus 149 ~~i~~~i~~~~~~ 161 (189)
+++.+.+.+....
T Consensus 167 ~~l~~~~~~~~~~ 179 (218)
T 4djt_A 167 LHLARIFTGRPDL 179 (218)
T ss_dssp HHHHHHHHCCTTC
T ss_pred HHHHHHHhccccc
Confidence 9999999876543
No 85
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=1.1e-29 Score=178.71 Aligned_cols=142 Identities=16% Similarity=0.380 Sum_probs=117.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEE
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAIL 88 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 88 (189)
+||+++|++|||||||++++.++.+.. ..+|++.. ...+... .+.+.+||+||++++...+..+++.+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~---~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 73 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC---CCCCSSCC--EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc---ccCcCcee--EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEE
Confidence 589999999999999999999888753 25566533 3333333 4688999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHHHHH
Q psy17231 89 VFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~~~~ 148 (189)
|||++++++|+.+..|+..+.... .+.|+++|+||+|+.... .+++++||++|.|++++|
T Consensus 74 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999999999998887643 689999999999975321 158999999999999999
Q ss_pred HHHHHHHHH
Q psy17231 149 ADIGRQLIL 157 (189)
Q Consensus 149 ~~i~~~i~~ 157 (189)
+++.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999987753
No 86
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=1e-31 Score=195.47 Aligned_cols=150 Identities=37% Similarity=0.532 Sum_probs=123.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+.... .++.+.+.....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH--HHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 34699999999999999999999988775544 5666667777888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||++++++|+.+..|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~ 188 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 188 (199)
T ss_dssp EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999999987765 57999999999996422 23789999999999999999
Q ss_pred HHHHHHHH
Q psy17231 150 DIGRQLIL 157 (189)
Q Consensus 150 ~i~~~i~~ 157 (189)
++.+.+.+
T Consensus 189 ~l~~~l~~ 196 (199)
T 3l0i_B 189 TMAAEIKK 196 (199)
T ss_dssp HHTTTTTT
T ss_pred HHHHHHHH
Confidence 99877643
No 87
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=2.5e-29 Score=182.03 Aligned_cols=145 Identities=14% Similarity=0.337 Sum_probs=116.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.+||+++|++|||||||+++|..+.+.. ..+|++. ....+... .+.+.+||+||++++...+..+++.+|
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~---~~~t~~~--~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGF--NVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE---EEEETTE--EEEEEEET--TEEEEEEECC-----CTTHHHHHHTCC
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc---cCCcCce--eEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 4568999999999999999999999877642 2556653 23334444 368899999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGV 144 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i 144 (189)
++++|||++++++++.+..|+..+.... .++|+++|+||+|+.... .++++|||++|.|+
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 9999999999999999999998887643 589999999999975421 15899999999999
Q ss_pred HHHHHHHHHHHH
Q psy17231 145 EEMFADIGRQLI 156 (189)
Q Consensus 145 ~~~~~~i~~~i~ 156 (189)
+++|+++.+.+.
T Consensus 179 ~~l~~~l~~~i~ 190 (192)
T 2b6h_A 179 YDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=4e-29 Score=179.59 Aligned_cols=146 Identities=16% Similarity=0.295 Sum_probs=121.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.++|+++|++|||||||++++.+.. ...+ .+|++.. ...+..+ ...+.+||+||++++...+..+++.+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~--~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 88 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTI--SPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDG 88 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSC--CCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcc--cccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence 568999999999999999999999877 3333 5666533 3344444 3688999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~ 145 (189)
+++|||++++++++.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|++
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 89 LIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 999999999999999999998887652 68999999999986432 1268999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy17231 146 EMFADIGRQLILS 158 (189)
Q Consensus 146 ~~~~~i~~~i~~~ 158 (189)
++|+++.+.+.+.
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 89
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.8e-29 Score=179.48 Aligned_cols=146 Identities=21% Similarity=0.378 Sum_probs=118.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.++|+++|++|||||||+++|.++.+. .+.+|++.. ...+..++ ..+.+||+||++++...+..+++.+|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~---~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 86 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 86 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE---EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC---cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence 56899999999999999999999988775 235666533 33444544 688999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~ 145 (189)
+++|||++++++|+.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|++
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 87 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 999999999999999999999888752 68999999999987431 1268999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy17231 146 EMFADIGRQLILS 158 (189)
Q Consensus 146 ~~~~~i~~~i~~~ 158 (189)
++|+++++.+...
T Consensus 167 ~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 167 QGLEWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887443
No 90
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5.7e-29 Score=180.36 Aligned_cols=151 Identities=26% Similarity=0.294 Sum_probs=126.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.++|+++|++|||||||+++|.+..+...+ .++.+... ......++..+.+.+||+||++++...+..++..+|+
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 82 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTY--IPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTT--SCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcc--cCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence 56799999999999999999999998876544 45555333 3445667778899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc--------------CCceEEeeccCCCCHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
+++|||++++++++.+..|+..+.... ++.|+++|+||+|+... ..+++++||++|.|++++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 999999999999999988887776643 47899999999997532 2378999999999999999
Q ss_pred HHHHHHHHHhh
Q psy17231 149 ADIGRQLILSN 159 (189)
Q Consensus 149 ~~i~~~i~~~~ 159 (189)
+++.+.+.+..
T Consensus 163 ~~l~~~~~~~~ 173 (199)
T 2gf0_A 163 QELLTLETRRN 173 (199)
T ss_dssp HHHHHHCSSSC
T ss_pred HHHHHHHhhhh
Confidence 99998876554
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=2.9e-29 Score=179.79 Aligned_cols=143 Identities=20% Similarity=0.363 Sum_probs=118.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
..+.+||+++|++|||||||+++|.+..+ ....+|.+... ..+..++ ..+.+||+||++++...+..+++.+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV---VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC---EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC---CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCC
Confidence 35679999999999999999999998877 22355665443 3444444 68899999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHh--CCCCcEEEEeeccccccc------------------CCceEEeeccCCCCH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGV 144 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i 144 (189)
++++|||++++++++.+..|+..+... ..++|+++|+||+|+... ..+++++||++|.|+
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 170 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 170 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 999999999999999999999888765 268999999999997431 116899999999999
Q ss_pred HHHHHHHHHH
Q psy17231 145 EEMFADIGRQ 154 (189)
Q Consensus 145 ~~~~~~i~~~ 154 (189)
+++|+++.+.
T Consensus 171 ~~l~~~l~~~ 180 (181)
T 2h17_A 171 CQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 92
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=177.73 Aligned_cols=147 Identities=18% Similarity=0.246 Sum_probs=119.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCC-CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCC
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDT-FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFA 83 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 83 (189)
..+.+||+++|++|||||||+++|.+.. +.... .+|++ .....+..++ ..+.+||+||++++...+..+++.+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI--LPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC--CCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc--CCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcC
Confidence 3567999999999999999999999877 44333 56665 3334445544 6889999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhC----CCCcEEEEeeccccccc------------------CCceEEeeccCC
Q psy17231 84 EAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTG 141 (189)
Q Consensus 84 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~ 141 (189)
|++++|||++++++++.+..|+..+.... .++|+++|+||+|+... ..+++++||++|
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 99999999999999999999999887763 47999999999987432 126899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy17231 142 EGVEEMFADIGRQLIL 157 (189)
Q Consensus 142 ~~i~~~~~~i~~~i~~ 157 (189)
.|++++|+++.+.+.+
T Consensus 172 ~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQT 187 (190)
T ss_dssp BTHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999887643
No 93
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=4.7e-29 Score=178.57 Aligned_cols=146 Identities=19% Similarity=0.345 Sum_probs=118.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.++|+++|++|||||||++++.++.+. .+.+|++... ..+.+++ ..+.+||+||++++...+..+++.+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV---TTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAA 88 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE---EECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC---ccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 57899999999999999999999977762 2255665333 3344443 688999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~ 145 (189)
+++|||++++++++.+..|+..+.... .+.|+++|+||+|+... ..+++++||++|.|++
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 89 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 999999999999999999998887653 68999999999996432 1168999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy17231 146 EMFADIGRQLILS 158 (189)
Q Consensus 146 ~~~~~i~~~i~~~ 158 (189)
++|+++.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=3.9e-29 Score=179.74 Aligned_cols=151 Identities=16% Similarity=0.264 Sum_probs=115.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE---CCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV---DDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
++||+++|++|||||||+++|.+........+.+|++.++....+.. ++..+.+.+||++|++++..++..+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 58999999999999999999997521112233667777766655443 234678999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------CCc----eEEeeccCC
Q psy17231 85 AAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISS----TYKTSCKTG 141 (189)
Q Consensus 85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~----~~~~Sa~~~ 141 (189)
++++|||++++ .+++.+..|+..+....++.|+++|+||+|+... ..+ ++++||++|
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE 161 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence 99999999997 5899999999998877668999999999886421 123 899999999
Q ss_pred C-CHHHHHHHHHHHHHHh
Q psy17231 142 E-GVEEMFADIGRQLILS 158 (189)
Q Consensus 142 ~-~i~~~~~~i~~~i~~~ 158 (189)
. +++++++.+.+.+.+.
T Consensus 162 ~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 162 SDALAKLRKTIINESLNF 179 (184)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred chhHHHHHHHHHHHHhcc
Confidence 7 9999999998877653
No 95
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=6.4e-29 Score=179.03 Aligned_cols=146 Identities=20% Similarity=0.339 Sum_probs=122.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||++++..+.+.. +.+|++.. ...+..+ ...+.+|||||++++...+..+++.+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~---~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 92 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT---TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDA 92 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE---ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC---cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCE
Confidence 578999999999999999999998777643 24565533 3334444 3688999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccccccc------------------CCceEEeeccCCCCHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~ 145 (189)
+++|+|++++++++.+..|+..+.... .+.|+++|+||+|+... ..++++|||++|.|++
T Consensus 93 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 93 VIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 999999999999999999998887653 58999999999997532 1158999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy17231 146 EMFADIGRQLILS 158 (189)
Q Consensus 146 ~~~~~i~~~i~~~ 158 (189)
++|+++.+.+.+.
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 96
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.96 E-value=5.3e-27 Score=170.54 Aligned_cols=152 Identities=35% Similarity=0.505 Sum_probs=130.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
...++|+++|++|||||||++++.+..+...+ .++.+.++....+.+++..+.+.+||++|++.+...+..+++.+++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 80 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG 80 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCE
Confidence 45789999999999999999999998876554 5666667777888888988899999999999999889999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
+++|||+++..+++.+..|+..+.... .+.|+++|+||+|+... ...++++||+++.|++++|+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 81 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999989998876654 57999999999987532 12689999999999999999
Q ss_pred HHHHHHHHhh
Q psy17231 150 DIGRQLILSN 159 (189)
Q Consensus 150 ~i~~~i~~~~ 159 (189)
++.+.+.+..
T Consensus 161 ~l~~~~~~~~ 170 (199)
T 2f9l_A 161 NILTEIYRIV 170 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=2.2e-28 Score=177.50 Aligned_cols=145 Identities=20% Similarity=0.227 Sum_probs=113.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEE--EEC-CeEEEEEEEeCCCccccccch---HH
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEY--KVD-DRSIQMQLWDTGGMERVASIT---SS 78 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~-~~~~~~~i~D~~g~~~~~~~~---~~ 78 (189)
..+.+||+++|++|||||||++++.+... . .++.+.++..... .+. +..+.+.+||++|+++|.... ..
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMS-P----NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM 91 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCC-G----GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCC-C----cceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence 35679999999999999999998876432 2 2333334433322 232 456789999999999987766 89
Q ss_pred HhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------------------cC
Q psy17231 79 YYKFAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------------------LI 130 (189)
Q Consensus 79 ~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------------------~~ 130 (189)
+++.++++++|||++++ +++..+..|+..+....++.|+++|+||+|+.. ..
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 99999999999999997 788888888888876667899999999999421 23
Q ss_pred CceEEeeccCCCCHHHHHHHHHHHH
Q psy17231 131 SSTYKTSCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 131 ~~~~~~Sa~~~~~i~~~~~~i~~~i 155 (189)
.+|++|||++ .|++++|+.+++.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 3799999999 99999999998865
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1.7e-27 Score=185.39 Aligned_cols=149 Identities=25% Similarity=0.394 Sum_probs=128.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
...++|+++|++|+|||||++++..+.+...+ .+|++ +.....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 229 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 229 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSC--CCCSE-EEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCccc--CCccc-ceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCE
Confidence 34689999999999999999999988875554 55554 3345566778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeeccccccc---------------------------C-CceEEe
Q psy17231 86 AILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNL---------------------------I-SSTYKT 136 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------------~-~~~~~~ 136 (189)
+++|||++++.+++.+. .|+..+....+++|+++|+||+|+... . .++++|
T Consensus 230 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 230 FLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 99999999999999996 788888877678999999999997531 1 279999
Q ss_pred eccCCCCHHHHHHHHHHHHHH
Q psy17231 137 SCKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 137 Sa~~~~~i~~~~~~i~~~i~~ 157 (189)
||++|.|++++|+++.+.+.+
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHHHHhc
Confidence 999999999999999998864
No 99
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=9.6e-28 Score=176.13 Aligned_cols=145 Identities=16% Similarity=0.255 Sum_probs=108.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe-EEEEEEEeCCCcccccc-chHHHhcC
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR-SIQMQLWDTGGMERVAS-ITSSYYKF 82 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~ 82 (189)
+.+.+||+++|++|||||||+++|.+..+...+ . +++.+... +.+++. .+.+.+|||||++++.. ++..+++.
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~--~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 78 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ--T-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSS 78 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBC--C-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccc--C-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhh
Confidence 456899999999999999999999998876544 2 23323333 455543 57899999999999887 78888999
Q ss_pred CcEEEEEEeCCChh-hHHHHHHHHHHHHHh----CCCCcEEEEeeccccccc----------------------------
Q psy17231 83 AEAAILVFSLDNAA-SFHVLSQHLLEIVTY----AENAKIFLCGNNEQCHNL---------------------------- 129 (189)
Q Consensus 83 ~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~----~~~~p~ivv~nK~d~~~~---------------------------- 129 (189)
++++++|||+++.+ ++.....|+..+... ..++|+++|+||+|+...
T Consensus 79 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~ 158 (214)
T 2fh5_B 79 ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL 158 (214)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccc
Confidence 99999999999854 466665554444332 257999999999996422
Q ss_pred ------------------------CCceEEeeccCC------CCHHHHHHHHHHH
Q psy17231 130 ------------------------ISSTYKTSCKTG------EGVEEMFADIGRQ 154 (189)
Q Consensus 130 ------------------------~~~~~~~Sa~~~------~~i~~~~~~i~~~ 154 (189)
..+|++|||++| .||+++|+++.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 236999999999 9999999999875
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=3.2e-30 Score=188.13 Aligned_cols=147 Identities=24% Similarity=0.384 Sum_probs=122.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+++|++|||||||+++|.+..+.... .+|.+ +.....+..++..+.+.+||+||++++...+..+++.+|+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 45799999999999999999999988775443 44443 3334445566667888999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHhCCCCcEEEEeecccccccC----------------------------CceEEe
Q psy17231 86 AILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHNLI----------------------------SSTYKT 136 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------------------~~~~~~ 136 (189)
+++|||++++++++.+. .|+..+....+++|+++|+||+|+.... .+++++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 99999999999999996 8888877765689999999999985421 178999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q psy17231 137 SCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 137 Sa~~~~~i~~~~~~i~~~i 155 (189)
||++|.|++++|+++.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998765
No 101
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=1.7e-27 Score=169.56 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=116.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhc
Q psy17231 2 ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYK 81 (189)
Q Consensus 2 ~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 81 (189)
+++..+.++|+++|++|||||||+++|.+..+.... .++.+.+.....+..++. .+.+|||||++++...+...+.
T Consensus 2 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~ 77 (178)
T 2lkc_A 2 SHMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE--AGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQ 77 (178)
T ss_dssp CTTCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSS--CCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCC
T ss_pred CCcCCCCCEEEEECCCCCCHHHHHHHHhCCccccCC--CCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHh
Confidence 356678899999999999999999999998876554 333333444555666664 5789999999999998888899
Q ss_pred CCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CCceEEee
Q psy17231 82 FAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------ISSTYKTS 137 (189)
Q Consensus 82 ~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~~~~~~S 137 (189)
.+|++++|+|+++ .++++.+. .+.. .++|+++|+||+|+... ..+++++|
T Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~l~----~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (178)
T 2lkc_A 78 VTDIVILVVAADDGVMPQTVEAIN----HAKA--ANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLS 151 (178)
T ss_dssp CCCEEEEEEETTCCCCHHHHHHHH----HHGG--GSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred hCCEEEEEEECCCCCcHHHHHHHH----HHHh--CCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence 9999999999988 44443332 2222 37999999999997531 02789999
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 138 CKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 138 a~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
|++|.|++++|+++.+.+...+.
T Consensus 152 a~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 152 AKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp SSSSHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHhhhhhcc
Confidence 99999999999999998876543
No 102
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=186.15 Aligned_cols=145 Identities=17% Similarity=0.367 Sum_probs=115.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+.+||+|+|++|||||||+++|.+..+... .+|++.... .+... .+.+.+|||||++.+..++..+++.+|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~---~pT~~~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 235 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQG 235 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE---EEETTEEEE--EEEET--TEEEEEEECC-----CCSHHHHHTTEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc---ccccceEEE--EEecC--cEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 3567999999999999999999998876432 345544432 33333 4689999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCHH
Q psy17231 86 AILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVE 145 (189)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~ 145 (189)
+++|||++++++|+.+..|+..+.... +++|+++|+||+|+.... .+++++||++|.||+
T Consensus 236 vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 236 LIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 999999999999999998888876654 589999999999975431 158999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17231 146 EMFADIGRQLIL 157 (189)
Q Consensus 146 ~~~~~i~~~i~~ 157 (189)
++|++|.+.+.+
T Consensus 316 el~~~l~~~l~~ 327 (329)
T 3o47_A 316 EGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=9.6e-27 Score=164.42 Aligned_cols=141 Identities=15% Similarity=0.202 Sum_probs=106.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------chHHH
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------ITSSY 79 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~ 79 (189)
|+.++|+++|++|||||||+++|.+..+.... .++.+.+.....+..++ ..+.+|||||++++.. +...+
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 76 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY 76 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccC--CCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHH
Confidence 45789999999999999999999987664433 33333455555555555 5789999999987752 33455
Q ss_pred hc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCCC
Q psy17231 80 YK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEG 143 (189)
Q Consensus 80 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~ 143 (189)
++ .++++++|+|+++.+. ...|+..+... +.|+++|+||+|+... ..+++++||++|.|
T Consensus 77 ~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~ 151 (165)
T 2wji_A 77 IINEKPDLVVNIVDATALER---NLYLTLQLMEM--GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMG 151 (165)
T ss_dssp HHHHCCSEEEEEEETTCHHH---HHHHHHHHHHT--TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBS
T ss_pred HhcCCCCEEEEEecCCchhH---hHHHHHHHHhc--CCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCC
Confidence 54 8999999999998653 44577776654 7999999999886421 23799999999999
Q ss_pred HHHHHHHHHHHH
Q psy17231 144 VEEMFADIGRQL 155 (189)
Q Consensus 144 i~~~~~~i~~~i 155 (189)
++++|+++.+.+
T Consensus 152 v~~l~~~l~~~~ 163 (165)
T 2wji_A 152 IEELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 104
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.95 E-value=5.6e-26 Score=164.26 Aligned_cols=147 Identities=35% Similarity=0.539 Sum_probs=128.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
..++++++|++|||||||++++.+..+...+ .+|++.++....+.+++..+.+.+||++|++++...+..+++.++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 3589999999999999999999998876555 67777788888888899888899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~ 150 (189)
++|||+++..+++.+..|+..+.... .+.|+++++||+|+... ...++++||+++.|++++|++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT 185 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999989998876654 57899999999987532 126899999999999999999
Q ss_pred HHHHH
Q psy17231 151 IGRQL 155 (189)
Q Consensus 151 i~~~i 155 (189)
+.+.+
T Consensus 186 l~~~i 190 (191)
T 1oix_A 186 ILTEI 190 (191)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=7.6e-27 Score=191.34 Aligned_cols=149 Identities=15% Similarity=0.311 Sum_probs=121.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAE 84 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 84 (189)
.++.+||+++|.+|||||||+++|.+..+... .+|++.+.. .+... .+.+.+|||+|++.+..++..+++.+|
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~---~~T~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~ad 391 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQ 391 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC---CCCSSEEEE--EEESS--SCEEEEEEECCCGGGSGGGGGGGTTCC
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCc---CCccceeEE--EEEeC--CEEEEEEECCCcHHHHHHHHHHhccCC
Confidence 35679999999999999999999998885432 556654443 33333 468999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhC--CCCcEEEEeecccccccC------------------CceEEeeccCCCCH
Q psy17231 85 AAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGV 144 (189)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i 144 (189)
++++|||++++++|+.+..|+..+.... .++|+|+|+||+|+.... .++++|||++|.||
T Consensus 392 ~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 392 GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCH
Confidence 9999999999999999999998887653 589999999999975321 14899999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy17231 145 EEMFADIGRQLILSNR 160 (189)
Q Consensus 145 ~~~~~~i~~~i~~~~~ 160 (189)
+++|++|.+.+.+...
T Consensus 472 ~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 472 YEGLTWLTSNYKSKLA 487 (497)
T ss_dssp HHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999988755443
No 106
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=1.7e-26 Score=164.39 Aligned_cols=146 Identities=16% Similarity=0.203 Sum_probs=109.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc--------hHH
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI--------TSS 78 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 78 (189)
+.++|+++|++|||||||+++|.+........ .++...+.....+.+++. .+.+|||||++++... ...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeC-CCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHH
Confidence 56899999999999999999999876432222 222233555566666664 5799999998764321 123
Q ss_pred HhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc--------CCceEEeeccCCCCHHHHHH
Q psy17231 79 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL--------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~--------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
.++.+|++++|+|++++.+++ ...|+..+.... .++|+++|+||+|+... ..+++++||++|.|++++|+
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 158 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRN 158 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHHHHH
T ss_pred HHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhhhhhccCCceEEEeCCCCCCHHHHHH
Confidence 578999999999999988876 446777776654 57999999999997432 23789999999999999999
Q ss_pred HHHHHHH
Q psy17231 150 DIGRQLI 156 (189)
Q Consensus 150 ~i~~~i~ 156 (189)
++.+.+.
T Consensus 159 ~l~~~~~ 165 (172)
T 2gj8_A 159 HLKQSMG 165 (172)
T ss_dssp HHHHHC-
T ss_pred HHHHHhh
Confidence 9987764
No 107
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.94 E-value=3e-27 Score=178.35 Aligned_cols=150 Identities=16% Similarity=0.160 Sum_probs=110.6
Q ss_pred CCCceEEEEEcCC---------CCCHHHHHHHHHh---CCCCCCCCCcccc-eeeeeEEEE--------------EECCe
Q psy17231 5 KVPEQKVILCGEY---------GVGKSSLFRRYAY---DTFISSSSRKSTL-GLDNFNKEY--------------KVDDR 57 (189)
Q Consensus 5 ~~~~~~i~i~G~~---------g~GKTtli~~l~~---~~~~~~~~~~~t~-~~~~~~~~~--------------~~~~~ 57 (189)
.++.+||+++|.+ |||||||+++|.. ..+...+ .+|+ +.++....+ ..++.
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~--~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDH--TSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCC--CCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCcccccc--CCcccccccceeEeecccccccccccccccCCc
Confidence 3567999999999 9999999999998 4454333 3332 223322211 13456
Q ss_pred EEEEEEEe-----------------------CCCccccccchHHHhc---------------------CCcEEEEEEeCC
Q psy17231 58 SIQMQLWD-----------------------TGGMERVASITSSYYK---------------------FAEAAILVFSLD 93 (189)
Q Consensus 58 ~~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~ 93 (189)
.+.+.+|| ++|+++|..++..+++ .+|++++|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78899999 5666666666666666 799999999999
Q ss_pred Ch--hhHHHHHHHHHHHHHhC--CCCcEEEEeecccccc--------------cCCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231 94 NA--ASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQCHN--------------LISSTYKTSCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 94 ~~--~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~~~~~i~~~~~~i~~~i 155 (189)
++ ++|+.+..|+..+.... .++|+++|+||+|+.. ...+++++||++|.|++++|+++.+.+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 98 99999999999887652 6899999999999642 134899999999999999999998876
Q ss_pred H
Q psy17231 156 I 156 (189)
Q Consensus 156 ~ 156 (189)
.
T Consensus 254 ~ 254 (255)
T 3c5h_A 254 D 254 (255)
T ss_dssp H
T ss_pred c
Confidence 4
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=9.4e-27 Score=179.60 Aligned_cols=146 Identities=17% Similarity=0.097 Sum_probs=112.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---chHHHhcCCcE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFIS-SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---ITSSYYKFAEA 85 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~ 85 (189)
||+++|++|||||||++++.++.+.. .....+|++.++.. + + ..+++++|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999987654332 12246777776653 2 2 347899999999999964 46889999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------------------cCCceEEee
Q psy17231 86 AILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------------------LISSTYKTS 137 (189)
Q Consensus 86 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------------------~~~~~~~~S 137 (189)
+++|||++++ ++++.+..|+..+....+++|+++++||+|+.. ....||+||
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS 155 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS 155 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence 9999999998 444455555666655567899999999988632 123789999
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhhh
Q psy17231 138 CKTGEGVEEMFADIGRQLILSNRS 161 (189)
Q Consensus 138 a~~~~~i~~~~~~i~~~i~~~~~~ 161 (189)
|++ .||.++|..+++.+......
T Consensus 156 Akd-~nV~eAFs~iv~~li~~~~~ 178 (331)
T 3r7w_B 156 IFD-HSIYEAFSRIVQKLIPELSF 178 (331)
T ss_dssp SSS-SHHHHHHHHHHTTSSTTHHH
T ss_pred cCC-CcHHHHHHHHHHHHHhhHHH
Confidence 998 69999999999988765443
No 109
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.94 E-value=2.2e-25 Score=165.29 Aligned_cols=152 Identities=18% Similarity=0.150 Sum_probs=108.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc---------cc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA---------SI 75 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~ 75 (189)
....++|+++|++|||||||+++|.+..+........|. +.........+ ..+.+|||||+.+.. ..
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~--~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 101 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTK--NLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT 101 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-------CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcce--eeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH
Confidence 456799999999999999999999988764222111121 22233333333 578999999983211 11
Q ss_pred hHHHhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhCCCCcEEEEeeccccccc------------------C--Cce
Q psy17231 76 TSSYYKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------I--SST 133 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~--~~~ 133 (189)
...++..+|++++|||++++.+|+ ....|+..+....+++|+++|+||+|+... . .++
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 234577889999999999988764 234566666554458999999999986421 1 478
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 134 YKTSCKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 134 ~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
++|||++|.|++++|+++.+.+.+.+.
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876654
No 110
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=8.4e-26 Score=174.71 Aligned_cols=147 Identities=19% Similarity=0.298 Sum_probs=116.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc-----ccchHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFI-SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV-----ASITSSYY 80 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~ 80 (189)
..+||+++|++|||||||++++.++... ....+.+|++..... +.+.+ .+.+.+||+||++++ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999876322 222446666555443 33434 578999999999988 67888999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHH---HHHHhCCCCcEEEEeecccccc---------------------c---CCce
Q psy17231 81 KFAEAAILVFSLDNAASFHVLSQHLL---EIVTYAENAKIFLCGNNEQCHN---------------------L---ISST 133 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~p~ivv~nK~d~~~---------------------~---~~~~ 133 (189)
+.+|++++|||++++++++.+..|.. .+....+++|+++|+||+|+.. . ..++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877654 4444457899999999999753 0 1589
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHH
Q psy17231 134 YKTSCKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 134 ~~~Sa~~~~~i~~~~~~i~~~i~~ 157 (189)
+++||++ .++.++|..+++.+..
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEeeecC-ChHHHHHHHHHHHHcC
Confidence 9999999 8999999998876543
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=2.3e-25 Score=160.01 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=111.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc------cchH
Q psy17231 4 IKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA------SITS 77 (189)
Q Consensus 4 ~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~ 77 (189)
..++.++|+++|++|||||||+++|.+..+.... .++...+.....+..++ ..+.+|||||++++. .++.
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~ 78 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIAR 78 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccC--CCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHH
Confidence 4567899999999999999999999986653333 23333355555555554 678999999998875 2345
Q ss_pred HHhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCC
Q psy17231 78 SYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTG 141 (189)
Q Consensus 78 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~ 141 (189)
.++. .++++++|+|.++ ++....|+..+... +.|+++|+||+|+... ..+++++||++|
T Consensus 79 ~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (188)
T 2wjg_A 79 DYIINEKPDLVVNIVDATA---LERNLYLTLQLMEM--GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKK 153 (188)
T ss_dssp HHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHTT--TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGT
T ss_pred HHHhccCCCEEEEEecchh---HHHHHHHHHHHHhc--CCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCC
Confidence 5554 5899999999876 45667788777664 7999999999886421 248999999999
Q ss_pred CCHHHHHHHHHHHHHHhh
Q psy17231 142 EGVEEMFADIGRQLILSN 159 (189)
Q Consensus 142 ~~i~~~~~~i~~~i~~~~ 159 (189)
.|++++|+++.+.+.+..
T Consensus 154 ~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 154 MGIEELKKAISIAVKDKK 171 (188)
T ss_dssp BSHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999998876543
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=4.6e-25 Score=154.42 Aligned_cols=141 Identities=21% Similarity=0.206 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc-------ccchHHHhc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV-------ASITSSYYK 81 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~ 81 (189)
.||+++|++|+|||||++++.+..+..... .++...+.....+...+. .+.+||+||+..+ ...+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVAD-VPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccC-CCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence 689999999999999999999887532221 222233444555556554 7899999998873 334566788
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------CC-ceEEeeccCCCCHHHHHHH
Q psy17231 82 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------IS-STYKTSCKTGEGVEEMFAD 150 (189)
Q Consensus 82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------~~-~~~~~Sa~~~~~i~~~~~~ 150 (189)
.++++++|+|++++.+.. ..|+...... .+.|+++|+||+|+... .. +++++||++|.|++++|++
T Consensus 79 ~~~~~i~v~d~~~~~~~~--~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 155 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQA--DYEVAEYLRR-KGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEA 155 (161)
T ss_dssp TCSEEEEEEESSSCCCHH--HHHHHHHHHH-HTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHHH
T ss_pred hCCEEEEEEECCCcccHh--HHHHHHHHHh-cCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHHH
Confidence 999999999999864332 1222222222 37999999999987532 22 7899999999999999999
Q ss_pred HHHHH
Q psy17231 151 IGRQL 155 (189)
Q Consensus 151 i~~~i 155 (189)
+.+.+
T Consensus 156 l~~~l 160 (161)
T 2dyk_A 156 IWERL 160 (161)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 98764
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.93 E-value=8.5e-26 Score=162.36 Aligned_cols=145 Identities=14% Similarity=0.108 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC-----------ccccccchH
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG-----------MERVASITS 77 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~ 77 (189)
+||+++|++|||||||+++|.+..+..... ++. +.....+... .+.+||+|| ++.+...+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 73 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKR--PGV--TRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIV 73 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSS--TTC--TTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCC--CCc--cceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHH
Confidence 689999999999999999999888765543 332 2223333333 578999999 556666667
Q ss_pred HHhcC-CcEEEEEEeCCChhhHHHH-HHHHHH--------HHHh--CCCCcEEEEeeccccccc------------CC--
Q psy17231 78 SYYKF-AEAAILVFSLDNAASFHVL-SQHLLE--------IVTY--AENAKIFLCGNNEQCHNL------------IS-- 131 (189)
Q Consensus 78 ~~~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~--~~~~p~ivv~nK~d~~~~------------~~-- 131 (189)
.+++. ++++++||++.+..++..+ ..|... +... ..++|+++|+||+|+... ..
T Consensus 74 ~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 74 HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL 153 (190)
T ss_dssp HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG
T ss_pred HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh
Confidence 77776 8888888888888888777 666642 2221 158999999999997532 11
Q ss_pred -----ceEEeeccCCCCHHHHHHHHHHHHHHhhhh
Q psy17231 132 -----STYKTSCKTGEGVEEMFADIGRQLILSNRS 161 (189)
Q Consensus 132 -----~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~ 161 (189)
+++++||++|.|++++|+++.+.+.+.+..
T Consensus 154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 154 SEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred hccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 369999999999999999999988765443
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.93 E-value=4e-25 Score=159.66 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=100.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC----------ccccccc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG----------MERVASI 75 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 75 (189)
...++|+++|++|||||||+++|.+..+.... .++.+.+.....+..+. .+.+||||| ++.+..+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLART--SSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC---------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcccc--CCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 35699999999999999999999988754433 33333344334444443 589999999 5666666
Q ss_pred hHHHhcCC---cEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------CCceE
Q psy17231 76 TSSYYKFA---EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISSTY 134 (189)
Q Consensus 76 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~~~ 134 (189)
+..+++.+ +++++|+|++++.++.... ++..+.. .+.|+++|+||+|+... ..+++
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 77777776 9999999999877665542 2222222 37999999999886421 23789
Q ss_pred EeeccCCCCHHHHHHHHHHHHH
Q psy17231 135 KTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 135 ~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
++||++|.|++++|+++.+.+.
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999988763
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.92 E-value=5.6e-24 Score=160.67 Aligned_cols=142 Identities=25% Similarity=0.215 Sum_probs=107.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccch------HHH
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASIT------SSY 79 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~ 79 (189)
++.++|+++|++|||||||+++|.+..+..... ++...+.....+...+ ..+.+||+||+..+...+ ..+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~--pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~ 78 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANW--PGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDY 78 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCC--CCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHH
Confidence 467899999999999999999999877643332 2222344444444444 688999999998776532 444
Q ss_pred h--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceEEeeccCCCC
Q psy17231 80 Y--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTYKTSCKTGEG 143 (189)
Q Consensus 80 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~~~~~ 143 (189)
+ ..+|++++|+|+++.++. ..|...+... ++|+++|+||+|+.. ...+++++||++|.|
T Consensus 79 ~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 79 LLKGDADLVILVADSVNPEQS---LYLLLEILEM--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HHHSCCSEEEEEEETTSCHHH---HHHHHHHHTT--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTT
T ss_pred HhhcCCCEEEEEeCCCchhhH---HHHHHHHHhc--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcC
Confidence 4 589999999999987643 3466666554 799999999988632 134899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17231 144 VEEMFADIGRQLI 156 (189)
Q Consensus 144 i~~~~~~i~~~i~ 156 (189)
++++|+++.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988765
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=3.2e-25 Score=183.14 Aligned_cols=149 Identities=21% Similarity=0.323 Sum_probs=110.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEE------E--EECCeEEEEEEEeCCCccccccch
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKE------Y--KVDDRSIQMQLWDTGGMERVASIT 76 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~------~--~~~~~~~~~~i~D~~g~~~~~~~~ 76 (189)
..+.+||+++|.+|||||||++++.+..+.... .+|++.+..... + ..++..+.+.+||+||++.+...+
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~--~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~ 115 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKE--SQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH 115 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH
Confidence 356799999999999999999999988876444 667766665432 1 112335789999999999999999
Q ss_pred HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------CCceEEeeccCC
Q psy17231 77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTG 141 (189)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~ 141 (189)
..+++.++++++|||+++. +.+..|+..+....++.|+++|+||+|+... ..+++++||++|
T Consensus 116 ~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 116 QFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 9999999999999999765 4667889888888778999999999997432 225999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy17231 142 EGVEEMFADIGRQLILS 158 (189)
Q Consensus 142 ~~i~~~~~~i~~~i~~~ 158 (189)
.|++++++++.+.+.+.
T Consensus 193 ~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHP 209 (535)
T ss_dssp --CTTHHHHHHHHHTCT
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 99999999999988654
No 117
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.91 E-value=5.8e-24 Score=153.24 Aligned_cols=140 Identities=20% Similarity=0.183 Sum_probs=101.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC----------ccccccc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG----------MERVASI 75 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 75 (189)
...++|+++|++|||||||+++|.+..+... .++.+.+........+. .+.+||+|| ++.+..+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFV---SKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC---CSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccc---cCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 4468999999999999999999998874322 33333333333333333 468999999 5556666
Q ss_pred hHHHhcCC---cEEEEEEeCCChh--hHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------CCc
Q psy17231 76 TSSYYKFA---EAAILVFSLDNAA--SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISS 132 (189)
Q Consensus 76 ~~~~~~~~---~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~ 132 (189)
+..+++.+ +++++|+|+++.. ....+..|+.. . +.|+++|+||+|+... ..+
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~---~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS---L--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT 169 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---T--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH---c--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence 66677665 8999999988753 33344444433 2 7999999999996421 138
Q ss_pred eEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 133 TYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 133 ~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
++++||++|.|++++|+++.+.+.
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHC
T ss_pred eEEEecCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999998774
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.91 E-value=4.2e-24 Score=161.17 Aligned_cols=137 Identities=12% Similarity=0.140 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc----------chHH
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS----------ITSS 78 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~ 78 (189)
.+|+++|++|||||||+|+|.+..+.... .+++..+.....+..++. .+.+|||||...+.. +...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~--~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGN--WPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEE--CTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccC--CCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHH
Confidence 48999999999999999999988754444 233334555666666664 789999999987753 4455
Q ss_pred Hh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCC
Q psy17231 79 YY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGE 142 (189)
Q Consensus 79 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~ 142 (189)
++ ..+|++++|+|+++.+++..+..|+ ... ++|+++|+||+|+... ..+++++||++|.
T Consensus 78 ~~~~~~~d~vi~VvDas~~~~~~~l~~~l---~~~--~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACHLERHLYLTSQL---FEL--GKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHHHSCCSEEEEEEEGGGHHHHHHHHHHH---TTS--CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTB
T ss_pred HHhhCCCCEEEEEeeCCCchhHHHHHHHH---HHc--CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCC
Confidence 56 8899999999999977665544443 332 7999999999885321 3489999999999
Q ss_pred CHHHHHHHHHHH
Q psy17231 143 GVEEMFADIGRQ 154 (189)
Q Consensus 143 ~i~~~~~~i~~~ 154 (189)
|++++|+++.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998775
No 119
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=6.5e-24 Score=161.65 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=105.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc----------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI---------- 75 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------- 75 (189)
|++++|+++|.+|||||||+|+|.+..+.... .+++..+.....+...+ ..+.+|||||+.++...
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~--~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i 76 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGN--WAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQI 76 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEE--CTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCC--CCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHH
Confidence 46799999999999999999999987754433 23333355555555554 46789999999877631
Q ss_pred hHHH--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceEEeecc
Q psy17231 76 TSSY--YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTYKTSCK 139 (189)
Q Consensus 76 ~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~ 139 (189)
...+ .+.+|++++|+|+++.+....+ ...+... ++|+++|+||+|+.. ...+++++||+
T Consensus 77 ~~~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~ 151 (274)
T 3i8s_A 77 ACHYILSGDADLLINVVDASNLERNLYL---TLQLLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVST 151 (274)
T ss_dssp HHHHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCG
T ss_pred HHHHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcC
Confidence 2222 3799999999999987655444 4444444 799999999988542 23589999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy17231 140 TGEGVEEMFADIGRQLI 156 (189)
Q Consensus 140 ~~~~i~~~~~~i~~~i~ 156 (189)
+|.|++++|+++.+.+.
T Consensus 152 ~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKA 168 (274)
T ss_dssp GGHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999887654
No 120
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.91 E-value=1.4e-23 Score=162.27 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=114.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc----------c
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA----------S 74 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~ 74 (189)
..+.-.|+++|.+|||||||+|+|.+..+........+. ........... ....+.+|||||+.++. .
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT-~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTT-RMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCC-CSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCce-eeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence 355678999999999999999999988875433222221 13333333443 13678999999986544 4
Q ss_pred chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc-c----------------cCCceEEee
Q psy17231 75 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH-N----------------LISSTYKTS 137 (189)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~-~----------------~~~~~~~~S 137 (189)
....++..+|++++|+|+++..++.....|+..+... +.|+++|+||+|+. . ...+++++|
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS 162 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS 162 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 5567788999999999999988888887778777764 79999999999975 1 124799999
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q psy17231 138 CKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 138 a~~~~~i~~~~~~i~~~i~~ 157 (189)
|++|.|++++|+++.+.+.+
T Consensus 163 A~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 163 ALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp TTTTBSHHHHHHHHHHHSCB
T ss_pred CCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999887743
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.91 E-value=1.5e-23 Score=159.36 Aligned_cols=140 Identities=15% Similarity=0.134 Sum_probs=104.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc------cchHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA------SITSSYY 80 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~ 80 (189)
..++|+++|++|||||||+|+|.+........ + |.+.......+.. ...+.+|||||++.+. .+...++
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~--p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~ 76 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNW--P--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYL 76 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSS--S--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCC--C--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHH
Confidence 35799999999999999999999876433332 2 2233333334444 4578999999998775 3445555
Q ss_pred c--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------CCceEEeeccCCCCH
Q psy17231 81 K--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------ISSTYKTSCKTGEGV 144 (189)
Q Consensus 81 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------~~~~~~~Sa~~~~~i 144 (189)
. .+|++++|+|+++.+++ ..|...+... ++|+++|+||+|+... ..+++++||++|.|+
T Consensus 77 ~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 77 LSQRADSILNVVDATNLERN---LYLTTQLIET--GIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp HTTCCSEEEEEEEGGGHHHH---HHHHHHHHHT--CSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred hcCCCCEEEEEecCCchHhH---HHHHHHHHhc--CCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCH
Confidence 5 69999999999987644 4566666553 7999999999886421 348999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17231 145 EEMFADIGRQLI 156 (189)
Q Consensus 145 ~~~~~~i~~~i~ 156 (189)
+++|+++.+.+.
T Consensus 152 ~el~~~i~~~~~ 163 (272)
T 3b1v_A 152 DQVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHHSCT
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=2.9e-23 Score=157.81 Aligned_cols=145 Identities=19% Similarity=0.157 Sum_probs=110.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------chHHH
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------ITSSY 79 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~ 79 (189)
|+.++|+++|++|||||||+++|.+..+.... .++.+.+.....+.+.+. .+.+||+||+..+.. ....+
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~--~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~ 76 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGN--WPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNF 76 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEE--CTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCC--CCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHh
Confidence 46789999999999999999999988764333 334444555666666654 589999999987765 44555
Q ss_pred h--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------------cCCceEEeeccCCCC
Q psy17231 80 Y--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--------------LISSTYKTSCKTGEG 143 (189)
Q Consensus 80 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--------------~~~~~~~~Sa~~~~~ 143 (189)
+ ..+|++++|+|+++.+ ....|...+... ...|+++|+||+|+.. ...+++++||++|.|
T Consensus 77 ~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~g 152 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTCLM---RNLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEG 152 (271)
T ss_dssp HHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBT
T ss_pred hhccCCcEEEEEecCCcch---hhHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCC
Confidence 5 6899999999998864 334455555554 1399999999988432 234899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy17231 144 VEEMFADIGRQLILS 158 (189)
Q Consensus 144 i~~~~~~i~~~i~~~ 158 (189)
++++|+++.+.+...
T Consensus 153 i~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 153 VEELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887543
No 123
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=7.2e-24 Score=163.30 Aligned_cols=150 Identities=19% Similarity=0.165 Sum_probs=106.1
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc--------c
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER--------V 72 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~ 72 (189)
|+.. .+..+|+++|.+|||||||+|+|.+..+........|.. +.....+... ..++.+|||||+.+ +
T Consensus 1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr-~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~ 76 (301)
T 1wf3_A 1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR-KRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFM 76 (301)
T ss_dssp --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHH
T ss_pred CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee-EEEEEEEEeC--CcEEEEecCccccchhhHHHHHH
Confidence 5654 556789999999999999999999887753322222221 2222233333 46889999999876 3
Q ss_pred ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHH-HHHHhCCCCcEEEEeeccccccc-------------CCceEEeec
Q psy17231 73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLL-EIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSC 138 (189)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa 138 (189)
......+++.+|++++|+|++++.+.. ..|+. .+....++.|+++|+||+|+... ..+++++||
T Consensus 77 ~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA 154 (301)
T 1wf3_A 77 DQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSA 154 (301)
T ss_dssp HHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCT
T ss_pred HHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeC
Confidence 344566788999999999998864432 34543 34333347999999999997531 136799999
Q ss_pred cCCCCHHHHHHHHHHHHH
Q psy17231 139 KTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 139 ~~~~~i~~~~~~i~~~i~ 156 (189)
++|.|++++++++.+.+.
T Consensus 155 ~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 155 LDERQVAELKADLLALMP 172 (301)
T ss_dssp TCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHhcc
Confidence 999999999999887653
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.90 E-value=9.5e-24 Score=155.60 Aligned_cols=148 Identities=14% Similarity=0.078 Sum_probs=100.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEEC-CeEEEEEEEeCCCcc----------cccc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSIQMQLWDTGGME----------RVAS 74 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~g~~----------~~~~ 74 (189)
...++|+++|.+|+|||||+++|.+....... ..+.+........... .....+.+|||||.. .+..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFA--SKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCT--TCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceee--cCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 44689999999999999999999987632111 1111222222233333 334578999999953 3344
Q ss_pred chHHHhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc-----------------------
Q psy17231 75 ITSSYYKF---AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN----------------------- 128 (189)
Q Consensus 75 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~----------------------- 128 (189)
....+++. +|++++|+|+++..+. ....|+..+.. .++|+++|+||+|+..
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 44455554 7789999999875332 22344444444 3799999999988632
Q ss_pred -cCCceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231 129 -LISSTYKTSCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 129 -~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
...+++++||++|.|++++|+++.+.+...
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 223689999999999999999999887544
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=5.2e-23 Score=167.10 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=92.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccch--------HHH
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASIT--------SSY 79 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 79 (189)
.++|+++|++|+|||||+|+|.+........ .+++..+.....+..++ ..+.+|||||+.++...+ ..+
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~-~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSH-MPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 5789999999999999999999875322211 22223355555566665 578999999997765433 335
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------CCceEEeeccCCCCHHHH
Q psy17231 80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------~~~~~~~Sa~~~~~i~~~ 147 (189)
+..+|++++|+|++++.+++++..+...+. ...++|+++|+||+|+... ..+++++||++|.|++++
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~-~l~~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL 388 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKA-AHPAAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTL 388 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHH-HCTTSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHH-hcCCCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHH
Confidence 788999999999999887754333332222 2237999999999997532 247999999999999999
Q ss_pred HHHHHHHHH
Q psy17231 148 FADIGRQLI 156 (189)
Q Consensus 148 ~~~i~~~i~ 156 (189)
++++.+.+.
T Consensus 389 ~~~i~~~~~ 397 (476)
T 3gee_A 389 KQHMGDLVK 397 (476)
T ss_dssp HHHHTHHHH
T ss_pred HHHHHHHHh
Confidence 999998886
No 126
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=2.8e-23 Score=152.63 Aligned_cols=115 Identities=18% Similarity=0.278 Sum_probs=91.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcC-
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSS-SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKF- 82 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~- 82 (189)
+.+.++|+++|++|+|||||+++|.+..+.... ...++.+.++ ....+.+||+||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 356799999999999999999999988764321 1233332222 34578999999999998888888877
Q ss_pred ---CcEEEEEEeCC-ChhhHHHHHHHHHHHHHh-----CCCCcEEEEeecccccc
Q psy17231 83 ---AEAAILVFSLD-NAASFHVLSQHLLEIVTY-----AENAKIFLCGNNEQCHN 128 (189)
Q Consensus 83 ---~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~p~ivv~nK~d~~~ 128 (189)
++++++|+|++ +++++..+..|+..+... ..++|+++|+||+|+..
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 89999999999 889999999998888764 25899999999999754
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.88 E-value=2.3e-21 Score=152.75 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=111.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc---------ch
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS---------IT 76 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~ 76 (189)
...++++++|++|||||||+++|.+........+..|. .......... ...+.+|||||..+... ..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~--~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTR--GINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSS--CEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeee--ceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHH
Confidence 45689999999999999999999987643322223332 2222333333 35789999999865321 11
Q ss_pred HHHhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhCCCCcEEEEeecccccc-------------cCCceEEeeccCC
Q psy17231 77 SSYYKFAEAAILVFSLDNAA--SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN-------------LISSTYKTSCKTG 141 (189)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-------------~~~~~~~~Sa~~~ 141 (189)
..+...+|++++|+|+++.. +++....|+..+.....+.|+++|+||+|+.. ...+++++||++|
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTT
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCC
Confidence 23445689999999999887 67888889888887655899999999999743 1347999999999
Q ss_pred CCHHHHHHHHHHHHHHhh
Q psy17231 142 EGVEEMFADIGRQLILSN 159 (189)
Q Consensus 142 ~~i~~~~~~i~~~i~~~~ 159 (189)
.|++++++++.+.+....
T Consensus 321 ~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp BTHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999886543
No 128
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=1.6e-22 Score=163.24 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=107.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc----------ccccch
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME----------RVASIT 76 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~ 76 (189)
..++|+++|.+|||||||+|+|.+........ .+++..+.....+..++. .+.+|||||+. .|....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~-~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecC-CCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 46899999999999999999999876532211 222233555555666664 58999999983 333332
Q ss_pred H-HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------CCceEE
Q psy17231 77 S-SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------ISSTYK 135 (189)
Q Consensus 77 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------~~~~~~ 135 (189)
. ..++.+|++++|+|+++..+++.. .|+..+... ++|+++|+||+|+... ..++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA--GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT--TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc--CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 2 477889999999999998877665 576666553 7999999999986421 237899
Q ss_pred eeccCCCCHHHHHHHHHHHHHHhh
Q psy17231 136 TSCKTGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 136 ~Sa~~~~~i~~~~~~i~~~i~~~~ 159 (189)
+||++|.|++++|+.+.+.+.+..
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EecccCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999998887543
No 129
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=1.5e-22 Score=163.40 Aligned_cols=144 Identities=17% Similarity=0.251 Sum_probs=97.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc--------ccccchHHH
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME--------RVASITSSY 79 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~ 79 (189)
..+|+++|.+|||||||+|+|.+..+... .++.|.+..............+.+|||||++ .+......+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v---~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 79 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIV---EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 79 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC--------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceee---cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 47899999999999999999998765322 2333434433333343334578999999985 455566778
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHHHHH
Q psy17231 80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~~~~ 148 (189)
++.+|++++|+|+++..++.. .|+..+.+. .++|+++|+||+|+... ..+++++||++|.|+++++
T Consensus 80 ~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~-~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 80 MDEADVIIFMVNGREGVTAAD--EEVAKILYR-TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLL 156 (436)
T ss_dssp HHHCSEEEEEEETTTCSCHHH--HHHHHHHTT-CCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHH
T ss_pred HHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH-cCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHH
Confidence 899999999999988655432 344443333 47999999999996431 1378999999999999999
Q ss_pred HHHHHHHHH
Q psy17231 149 ADIGRQLIL 157 (189)
Q Consensus 149 ~~i~~~i~~ 157 (189)
+++.+.+.+
T Consensus 157 ~~i~~~l~~ 165 (436)
T 2hjg_A 157 DAVAEHFKN 165 (436)
T ss_dssp HHHHHTGGG
T ss_pred HHHHHhcCc
Confidence 999887753
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=2.2e-21 Score=156.68 Aligned_cols=141 Identities=17% Similarity=0.203 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc---------ccchHHH
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV---------ASITSSY 79 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~ 79 (189)
.+|+++|.+|||||||+|+|.+........ .+.+..+.......+.+. .+.+|||||++.. ......+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~-~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 78 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVED-EEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNM 78 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecC-CCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHH
Confidence 479999999999999999999876432111 333334555666677664 5799999997642 2345667
Q ss_pred hcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCH
Q psy17231 80 YKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGV 144 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i 144 (189)
++.+|++++|+|+++..+.. .+..|+. .. ++|+++|+||+|+... ..+++++||++|.|+
T Consensus 79 ~~~ad~il~V~D~~~~~~~~d~~i~~~l~---~~--~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 79 IREADLVLFVVDGKRGITKEDESLADFLR---KS--TVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINL 153 (439)
T ss_dssp HTTCSEEEEEEETTTCCCHHHHHHHHHHH---HH--TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSH
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHH---Hc--CCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCH
Confidence 89999999999998754432 2333332 22 7999999999996321 126899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17231 145 EEMFADIGRQLIL 157 (189)
Q Consensus 145 ~~~~~~i~~~i~~ 157 (189)
+++++++.+.+.+
T Consensus 154 ~~L~~~i~~~l~~ 166 (439)
T 1mky_A 154 DTMLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 9999999988864
No 131
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=7.6e-21 Score=152.00 Aligned_cols=152 Identities=13% Similarity=0.119 Sum_probs=110.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCc-cccee------------eeeEEEEEE---CCeEEEEEEEeCCC
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRK-STLGL------------DNFNKEYKV---DDRSIQMQLWDTGG 68 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~-~t~~~------------~~~~~~~~~---~~~~~~~~i~D~~g 68 (189)
..+.++|+++|.+|+|||||+++|.+.......... .+.+. +........ ......+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 467899999999999999999999865432111000 00000 000000000 11236899999999
Q ss_pred ccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------------
Q psy17231 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------- 129 (189)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------- 129 (189)
+++|.......+..+|++++|+|+++..++.+...|+..+.... ..|+++|+||+|+...
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~ 163 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWA 163 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTT
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-CCCEEEEEECccccchHHHHHHHHHHHHHHHhhCC
Confidence 99999988899999999999999998876777777777665552 4699999999886321
Q ss_pred -CCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231 130 -ISSTYKTSCKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 130 -~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 157 (189)
..+++++||++|.|++++++++.+.+..
T Consensus 164 ~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 164 ENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 2379999999999999999999887643
No 132
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=7.6e-22 Score=160.44 Aligned_cols=142 Identities=20% Similarity=0.214 Sum_probs=106.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc-cccc--------chHH
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME-RVAS--------ITSS 78 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~ 78 (189)
.++|+++|.+|+|||||+|+|.+........ .+.+..+.....+.+++ ..+.+|||||.. ++.. ....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~-~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCC-SSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCC-CCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 3799999999999999999999876432222 22223355556666665 468999999987 5542 2346
Q ss_pred HhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------CCceEEeeccCCCCHHH
Q psy17231 79 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------ISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------~~~~~~~Sa~~~~~i~~ 146 (189)
+++.+|++++|+|++++.+++... ++..+ .++|+++|+||+|+... ..+++++||++|.|+++
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~e 394 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEK 394 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHH
T ss_pred HhhcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHH
Confidence 788999999999999887775543 22222 37999999999998532 13799999999999999
Q ss_pred HHHHHHHHHHH
Q psy17231 147 MFADIGRQLIL 157 (189)
Q Consensus 147 ~~~~i~~~i~~ 157 (189)
+++++.+.+..
T Consensus 395 L~~~l~~~~~~ 405 (482)
T 1xzp_A 395 LEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHhh
Confidence 99999987653
No 133
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=1.1e-21 Score=159.09 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=107.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC----------ccccccc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG----------MERVASI 75 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 75 (189)
...++|+++|.+|+|||||+++|.+........ .+++..+.....+..++. .+.+||||| ++.|...
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~-~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCC-CCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 457899999999999999999999765321111 223333544555666664 789999999 5555554
Q ss_pred hH-HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------CCceE
Q psy17231 76 TS-SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------ISSTY 134 (189)
Q Consensus 76 ~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------~~~~~ 134 (189)
.. .+++.+|++++|+|+++... +....|...+.. .++|+++|+||+|+... ..+++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 44 36789999999999987543 233445555544 37999999999997431 24899
Q ss_pred EeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 135 KTSCKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 135 ~~Sa~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
++||++|.|++++|+++.+.+.+...
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998866543
No 134
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.86 E-value=1.4e-21 Score=158.12 Aligned_cols=143 Identities=17% Similarity=0.189 Sum_probs=97.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchH--------HH
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITS--------SY 79 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~~ 79 (189)
.++|+++|++|+|||||+|+|.+..+..... .++...+.....+.+++ ..+.+|||||+.++..... ..
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTD-LPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSC-CTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 5789999999999999999998865432222 22223344445566666 4679999999876544332 25
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHHHHH
Q psy17231 80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~~~~ 148 (189)
+..+|++++|+|++++.+... ..|+..+ ...|+++|+||+|+... ..+++++||++|.|+++++
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~ 375 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLE 375 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHH
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHH
Confidence 678999999999998766544 3444433 25899999999997532 2378999999999999999
Q ss_pred HHHHHHHHHh
Q psy17231 149 ADIGRQLILS 158 (189)
Q Consensus 149 ~~i~~~i~~~ 158 (189)
+++.+.+...
T Consensus 376 ~~i~~~~~~~ 385 (462)
T 3geh_A 376 TAILEIVQTG 385 (462)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhcc
Confidence 9999887543
No 135
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.6e-21 Score=139.39 Aligned_cols=130 Identities=15% Similarity=0.237 Sum_probs=95.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcC--
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSS-SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKF-- 82 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-- 82 (189)
.+.++|+++|++|||||||+++|.+..+.... ...++.+.+ .....+.+||+||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C---------CCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee---------ecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 45789999999999999999999988764311 112222111 123578999999999988877777766
Q ss_pred --CcEEEEEEeCC-ChhhHHHHHHHHHHHHHhC-----CCCcEEEEeecccccccCCceEEeeccCCCCHHHHHHHHHHH
Q psy17231 83 --AEAAILVFSLD-NAASFHVLSQHLLEIVTYA-----ENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 83 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~d~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~ 154 (189)
++++++|||++ +++++..+..|+..+.... .+.|+++|+||+|+... ..++++.+.+.+.
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------------~~~~~~~~~l~~~ 184 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA------------RPPSKIKDALESE 184 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC------------CCHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC------------CCHHHHHHHHHHH
Confidence 89999999999 8999999999988876542 47999999999998653 2455656555544
Q ss_pred HH
Q psy17231 155 LI 156 (189)
Q Consensus 155 i~ 156 (189)
+.
T Consensus 185 l~ 186 (193)
T 2ged_A 185 IQ 186 (193)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.86 E-value=5e-22 Score=155.22 Aligned_cols=147 Identities=17% Similarity=0.176 Sum_probs=110.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc----cccchHHHhc---
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER----VASITSSYYK--- 81 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~--- 81 (189)
.+|+++|.+|||||||+++|..........+..|. ......+.+++ ...+.+||+||+.+ +..+...+++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl--~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTL--VPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCC--CCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCcccc--CceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 36889999999999999999877643333223333 22233344443 24789999999643 3334444544
Q ss_pred CCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc-----------C--CceEEeeccCCC
Q psy17231 82 FAEAAILVFSLDN---AASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL-----------I--SSTYKTSCKTGE 142 (189)
Q Consensus 82 ~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~-----------~--~~~~~~Sa~~~~ 142 (189)
.++++++|+|+++ +++++.+..|+..+..+. .++|+++|+||+|+... . .+++++||+++.
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~ 315 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTRE 315 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSS
T ss_pred hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCc
Confidence 5999999999998 788999999999988764 47999999999996421 1 378999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy17231 143 GVEEMFADIGRQLILS 158 (189)
Q Consensus 143 ~i~~~~~~i~~~i~~~ 158 (189)
|++++++++.+.+.+.
T Consensus 316 gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 316 GLRELLFEVANQLENT 331 (342)
T ss_dssp TTHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHhhC
Confidence 9999999999888543
No 137
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.86 E-value=6.5e-21 Score=143.86 Aligned_cols=151 Identities=17% Similarity=0.077 Sum_probs=100.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccch--------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTF-ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASIT-------- 76 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------- 76 (189)
.+.++|+|+|++|||||||+++|.+... .....+.+ +..........+.+ ..+.+|||||+.++....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~-~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQT-LTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCC-CCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-eeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 4578999999999999999999998763 32222111 22234444455554 478999999987654322
Q ss_pred ---HHHhcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhCCCCcEEEEee-ccccccc---------------------C
Q psy17231 77 ---SSYYKFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYAENAKIFLCGN-NEQCHNL---------------------I 130 (189)
Q Consensus 77 ---~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~ivv~n-K~d~~~~---------------------~ 130 (189)
...++.+|++++|+|+++... ...+..|+..+.......|.++++| |+|+... .
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhC
Confidence 226688999999999986222 2223344444332212356666666 9987431 0
Q ss_pred Cc---e--EEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231 131 SS---T--YKTSCKTGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 131 ~~---~--~~~Sa~~~~~i~~~~~~i~~~i~~~~ 159 (189)
.. + +++||++|.|++++|+++.+.+....
T Consensus 177 ~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 177 GRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 11 2 78999999999999999999887643
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.86 E-value=5.1e-22 Score=158.98 Aligned_cols=145 Identities=16% Similarity=0.123 Sum_probs=104.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc-------hHH
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI-------TSS 78 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~ 78 (189)
...++|+++|.+|+|||||+++|.+..+..... .+....+.....+...+. ..+.+|||||+.++..+ ...
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~-~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSD-YAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCC-CCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 347899999999999999999999877532221 222223555555665553 37899999999887654 345
Q ss_pred HhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------------CCceEEeeccCCCCHH
Q psy17231 79 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 79 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~ 145 (189)
++..+|++++|+|+...+ ....|+..+... ++|+++|+||+|+... ..+++++||++|.|++
T Consensus 110 ~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~ 184 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTP---YEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFD 184 (423)
T ss_dssp HHTSCSEEEEECSSSCCH---HHHHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTT
T ss_pred HHhcCCEEEEEEeCCChH---HHHHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHH
Confidence 788999999999993333 345677766666 7999999999886432 2388999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17231 146 EMFADIGRQLIL 157 (189)
Q Consensus 146 ~~~~~i~~~i~~ 157 (189)
++|+++.+.+.+
T Consensus 185 eL~~~L~~~l~~ 196 (423)
T 3qq5_A 185 DIGKTISEILPG 196 (423)
T ss_dssp THHHHHHHHSCC
T ss_pred HHHHHHHHhhhh
Confidence 999999988843
No 139
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.85 E-value=3.2e-21 Score=160.19 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=102.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC--C---------CCCCCCcccceeeeeEE--EEEE---CCeEEEEEEEeCCCcc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDT--F---------ISSSSRKSTLGLDNFNK--EYKV---DDRSIQMQLWDTGGME 70 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~--~---------~~~~~~~~t~~~~~~~~--~~~~---~~~~~~~~i~D~~g~~ 70 (189)
+..+|+|+|+.++|||||+++|.... + .+..+.+.+.|.++... .+.+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45789999999999999999997521 1 11111112223333322 2222 4556899999999999
Q ss_pred ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc----------------CCceE
Q psy17231 71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----------------ISSTY 134 (189)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----------------~~~~~ 134 (189)
+|...+...++.+|++++|+|+++..+.+....|..... .++|+|+|+||+|+... ..+++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi 159 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAV 159 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCE
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEE
Confidence 999988999999999999999998776667766765443 27999999999997542 11589
Q ss_pred EeeccCCCCHHHHHHHHHHHHHH
Q psy17231 135 KTSCKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 135 ~~Sa~~~~~i~~~~~~i~~~i~~ 157 (189)
++||++|.|++++++++.+.+..
T Consensus 160 ~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 160 RCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp EECTTTCTTHHHHHHHHHHHSCC
T ss_pred EeecccCCCchhHHHHHhhcCCC
Confidence 99999999999999999887754
No 140
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.85 E-value=8.8e-22 Score=159.72 Aligned_cols=146 Identities=17% Similarity=0.258 Sum_probs=99.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCC--------ccccccch
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG--------MERVASIT 76 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~ 76 (189)
.|...+|+|+|.+|||||||+|+|.+..+... ..+.|.+..............+.+||||| ++++....
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v---~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~ 96 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIV---EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA 96 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC--------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCccc---CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence 46678999999999999999999998765322 23344455554445544456889999999 55666677
Q ss_pred HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------CCceEEeeccCCCCHH
Q psy17231 77 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 77 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------~~~~~~~Sa~~~~~i~ 145 (189)
..+++.+|++++|+|..+.- .....|+....+. .++|+++|+||+|+... ....+++||++|.|+.
T Consensus 97 ~~~~~~ad~il~VvD~~~~~--~~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~ 173 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGV--TAADEEVAKILYR-TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLG 173 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCS--CHHHHHHHHHHTT-CCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHH
T ss_pred HhhHhhCCEEEEEEeCCCCC--ChHHHHHHHHHHH-cCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchH
Confidence 88889999999999987632 2333444444443 48999999999986432 1256899999999999
Q ss_pred HHHHHHHHHHH
Q psy17231 146 EMFADIGRQLI 156 (189)
Q Consensus 146 ~~~~~i~~~i~ 156 (189)
++++.+.+.+.
T Consensus 174 ~L~~~i~~~l~ 184 (456)
T 4dcu_A 174 DLLDAVAEHFK 184 (456)
T ss_dssp HHHHHHHTTGG
T ss_pred HHHHHHHhhcc
Confidence 99999887654
No 141
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.85 E-value=9.4e-21 Score=148.56 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=89.0
Q ss_pred EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhC--CCCcEEEEeeccc
Q psy17231 58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQ 125 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d 125 (189)
.+.+.+||++|++.+...|..++++++++|+|||+++ ..++++...|+..+.... .+.|+|+++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 4789999999999999999999999999999999998 567999999999888743 6899999999988
Q ss_pred ccc-----------------------------------------cCCceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231 126 CHN-----------------------------------------LISSTYKTSCKTGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 126 ~~~-----------------------------------------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 159 (189)
+.. ....+++|||+++.||+++|+++.+.+.+..
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 731 1125789999999999999999999987654
No 142
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.85 E-value=9.1e-21 Score=157.26 Aligned_cols=148 Identities=17% Similarity=0.152 Sum_probs=105.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC--CC---------CCCCCcccceeeee--EEEEEE---CCeEEEEEEEeCCCcc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDT--FI---------SSSSRKSTLGLDNF--NKEYKV---DDRSIQMQLWDTGGME 70 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~--~~---------~~~~~~~t~~~~~~--~~~~~~---~~~~~~~~i~D~~g~~ 70 (189)
+..+|+++|..++|||||+++|.... +. +....+.+.|.++. ...+.+ ++..+.+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 35799999999999999999997521 11 11111111122221 112222 4556899999999999
Q ss_pred ccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccccC----------------CceE
Q psy17231 71 RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLI----------------SSTY 134 (189)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~----------------~~~~ 134 (189)
+|.......++.+|++++|+|+++..+.+....|..... .++|+|+|+||+|+.... .+++
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi 161 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAI 161 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCE
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEE
Confidence 999888889999999999999999877777777765443 379999999999975321 1489
Q ss_pred EeeccCCCCHHHHHHHHHHHHHH
Q psy17231 135 KTSCKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 135 ~~Sa~~~~~i~~~~~~i~~~i~~ 157 (189)
++||++|.|++++++++.+.+..
T Consensus 162 ~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 162 LASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EEEeecCCCchHHHHHHHHhccc
Confidence 99999999999999999887754
No 143
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.85 E-value=1.1e-20 Score=154.12 Aligned_cols=144 Identities=19% Similarity=0.169 Sum_probs=104.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc
Q psy17231 3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDT-------FISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI 75 (189)
Q Consensus 3 ~~~~~~~~i~i~G~~g~GKTtli~~l~~~~-------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 75 (189)
...++.++|+++|..++|||||+++|.+.. ...+..+..|+ +.....+.+++ ..+.+||+||+++|...
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi--~~~~~~~~~~~--~~i~iiDtPGh~~~~~~ 89 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITI--DIGFSAFKLEN--YRITLVDAPGHADLIRA 89 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC----------------------CCCEEEETT--EEEEECCCSSHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEE--ecceEEEEECC--EEEEEEECCChHHHHHH
Confidence 345678999999999999999999998765 22222222232 22222344444 57899999999999888
Q ss_pred hHHHhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CC
Q psy17231 76 TSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------IS 131 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~ 131 (189)
....+..+|++++|+|+++ +++++.+. .+.. .++|+++|+||+|+... ..
T Consensus 90 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 163 (482)
T 1wb1_A 90 VVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNS 163 (482)
T ss_dssp HHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGC
T ss_pred HHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccc
Confidence 8888999999999999987 45554443 2222 27899999999886320 24
Q ss_pred ceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 132 STYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 132 ~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
+++++||++|.|++++++++.+.+.
T Consensus 164 ~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 164 SIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHhhc
Confidence 7999999999999999999998875
No 144
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.85 E-value=5e-21 Score=159.10 Aligned_cols=147 Identities=17% Similarity=0.198 Sum_probs=105.8
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CcccceeeeeEEEE------------EECCeEEEEEEEeCCCcc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSS--RKSTLGLDNFNKEY------------KVDDRSIQMQLWDTGGME 70 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~--~~~t~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~ 70 (189)
+++.++|+++|++++|||||+++|.+..+..... ..++++..+..... ..+.....+.+|||||++
T Consensus 2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 3567899999999999999999998765432211 11222222211100 000011258999999999
Q ss_pred ccccchHHHhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------
Q psy17231 71 RVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ 129 (189)
Q Consensus 71 ~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------ 129 (189)
+|..++...++.+|++++|+|+++ +++++.+.. +.. .++|+++++||+|+.+.
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH--cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 999988888999999999999998 777765542 222 37999999999998531
Q ss_pred -----------------------------------CCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231 130 -----------------------------------ISSTYKTSCKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 130 -----------------------------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 157 (189)
..+++.+||++|.|++++++++...+..
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0168999999999999999999887753
No 145
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.85 E-value=5.1e-20 Score=145.12 Aligned_cols=148 Identities=18% Similarity=0.091 Sum_probs=103.2
Q ss_pred ceE-EEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc---------cccchH
Q psy17231 8 EQK-VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER---------VASITS 77 (189)
Q Consensus 8 ~~~-i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~ 77 (189)
.++ |+++|++|+|||||+|+|.+..+.....+..|. +.....+.+++ ..+.+|||+|... |...+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~--d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl- 252 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTM--SPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL- 252 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------C--CSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCccccc--CCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-
Confidence 355 889999999999999999987764444334443 45555666766 4679999999732 11122
Q ss_pred HHhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhC-CCCcEEEEeeccccccc-----------------C--CceEE
Q psy17231 78 SYYKFAEAAILVFSLDNAA--SFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL-----------------I--SSTYK 135 (189)
Q Consensus 78 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~-----------------~--~~~~~ 135 (189)
..+..+|++++|+|++++. ..+.+..|...+.... .+.|+|+|+||+|+... . .++++
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 2467899999999999876 5666666666555543 57999999999987421 1 15789
Q ss_pred eeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 136 TSCKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 136 ~Sa~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
+||++|.|++++++++.+.+.....
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred EECCCCcCHHHHHHHHHHHhcccCC
Confidence 9999999999999999887765543
No 146
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.84 E-value=3e-22 Score=164.24 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=106.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAA 86 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 86 (189)
++++|+++|++|+|||||+++|.+..+.... .+++..++....+...+ ...+.+|||||++.|..++...+..+|++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~--~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~v 79 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAME--AGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIV 79 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSS--SCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccc--CCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEE
Confidence 5688999999999999999999876654433 22222233333333322 23689999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CCceEEeeccCCCCHH
Q psy17231 87 ILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~~~~~~Sa~~~~~i~ 145 (189)
++|+|+++....+... ++..+.. .++|+++|+||+|+... ..+++++||++|.|++
T Consensus 80 ILVVDa~dg~~~qt~e-~l~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 80 ILVVAADDGVMKQTVE-SIQHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp EEECBSSSCCCHHHHH-HHHHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEEEECCCCccHHHHH-HHHHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 9999999865443332 2333333 37999999999997531 1268999999999999
Q ss_pred HHHHHHHHHHH
Q psy17231 146 EMFADIGRQLI 156 (189)
Q Consensus 146 ~~~~~i~~~i~ 156 (189)
++++++...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999987664
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=7.6e-20 Score=147.71 Aligned_cols=146 Identities=18% Similarity=0.147 Sum_probs=99.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccc-----------
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASI----------- 75 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 75 (189)
..++++++|++|||||||+|+|.+........ .++...+.....+.+++. .+.+|||+|..+....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~-~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCC-CCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 45899999999999999999999876421111 222223445556667765 5789999997543221
Q ss_pred -hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc--------------------CCceE
Q psy17231 76 -TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------------------ISSTY 134 (189)
Q Consensus 76 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------------------~~~~~ 134 (189)
....++.++++++|+|+++..+.... .+...+.. .++|+++|+||+|+... ..+++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 13456789999999999876555432 22222222 37999999999986421 23789
Q ss_pred EeeccCCCCHHHHHHHHHHHHHHh
Q psy17231 135 KTSCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 135 ~~Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
++||++|.|++++|+.+.+.+.+.
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999998877654
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.84 E-value=1.4e-20 Score=153.71 Aligned_cols=142 Identities=17% Similarity=0.165 Sum_probs=94.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCC---------------------------CCCCCcccceeeeeEEEEEECCeE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFI---------------------------SSSSRKSTLGLDNFNKEYKVDDRS 58 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~---------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 58 (189)
.+.+||+++|.+|+|||||+++|...... +........|.++......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 56799999999999999999999754110 011111111333333333343445
Q ss_pred EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHH-----HHHHHHHHHHhCCCCcEEEEeeccccccc----
Q psy17231 59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHV-----LSQHLLEIVTYAENAKIFLCGNNEQCHNL---- 129 (189)
Q Consensus 59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---- 129 (189)
..+.+|||||+++|.......+..+|++++|+|+++..++.. ...++..+.......|+|+|+||+|+...
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 689999999999999988999999999999999998754322 12222222232234679999999997541
Q ss_pred --------------------CCceEEeeccCCCCHHHH
Q psy17231 130 --------------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 130 --------------------~~~~~~~Sa~~~~~i~~~ 147 (189)
..+++++||++|.|++++
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 237899999999999853
No 149
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.83 E-value=9.8e-20 Score=145.78 Aligned_cols=147 Identities=16% Similarity=0.106 Sum_probs=95.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCcccceeeeeEEEEEE-------------C--C----eEEEEE
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDT---FISSSSRKSTLGLDNFNKEYKV-------------D--D----RSIQMQ 62 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~---~~~~~~~~~t~~~~~~~~~~~~-------------~--~----~~~~~~ 62 (189)
..+.++|+++|..++|||||+++|.+.. +..+..+.-|+...+....+.. . + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998432 2222222224433333222211 1 1 136899
Q ss_pred EEeCCCccccccchHHHhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------
Q psy17231 63 LWDTGGMERVASITSSYYKFAEAAILVFSLDN----AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------- 129 (189)
Q Consensus 63 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------- 129 (189)
+||+||+++|.......+..+|++++|+|+++ +++++.+..| . .....|+++|+||+|+...
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~-~l~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----E-ILGIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----H-HTTCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----H-HcCCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 99999999887766666778899999999985 4555544332 2 2224689999999886431
Q ss_pred -----------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 130 -----------ISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 130 -----------~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
..+++++||++|.|++++++++.+.+.
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 237899999999999999999987664
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.83 E-value=7e-20 Score=147.80 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=96.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCC---------------------------CCC--CCcccceeeeeEEEEEEC
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFI---------------------------SSS--SRKSTLGLDNFNKEYKVD 55 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~---------------------------~~~--~~~~t~~~~~~~~~~~~~ 55 (189)
..+.++|+++|.+++|||||+++|....-. +.. .+.+.+..+.....+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 356799999999999999999999543110 000 011222223333333333
Q ss_pred CeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhh---HH---HHHHHHHHHHHhCCCCc-EEEEeecccccc
Q psy17231 56 DRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAAS---FH---VLSQHLLEIVTYAENAK-IFLCGNNEQCHN 128 (189)
Q Consensus 56 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~ 128 (189)
...+.+|||||+++|.......+..+|++++|+|+++... |+ +....+..+.. .++| +|+|+||+|+..
T Consensus 94 --~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 --KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPT 169 (439)
T ss_pred --CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence 4589999999999998888888999999999999987532 21 22222222222 2566 999999999732
Q ss_pred c---------------------------CCceEEeeccCCCCHHHHHH
Q psy17231 129 L---------------------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 129 ~---------------------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
. ..+++++||++|.|++++++
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 0 12689999999999999765
No 151
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.83 E-value=6.1e-21 Score=156.77 Aligned_cols=116 Identities=10% Similarity=0.044 Sum_probs=80.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC------------------CCCCCC--cccceeeeeEEEEEECCeEEEEEEEeC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTF------------------ISSSSR--KSTLGLDNFNKEYKVDDRSIQMQLWDT 66 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~------------------~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~D~ 66 (189)
+..+|+|+|.+|+|||||+++|....- .+.... ...+........+.+. .+.+++|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEEC
Confidence 457999999999999999999962110 000000 0111112222233343 468899999
Q ss_pred CCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231 67 GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127 (189)
Q Consensus 67 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~ 127 (189)
||+.+|.......++.+|++++|+|+++.........|. .+... ++|+++|+||+|+.
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~--~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR--HTPIMTFINKMDRD 147 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT--TCCEEEEEECTTSC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEeCCCCc
Confidence 999999999999999999999999999876665555443 33333 79999999998864
No 152
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.83 E-value=1.1e-19 Score=140.85 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=87.5
Q ss_pred EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccc
Q psy17231 58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLD----------NAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQ 125 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d 125 (189)
.+.+++||++|++.++..|..++++++++++|||++ +.+++++...|+..+.... .+.|+++++||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 378999999999999999999999999999999664 6778888888888887653 6899999999988
Q ss_pred cccc-----------------------------------------CCceEEeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 126 CHNL-----------------------------------------ISSTYKTSCKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 126 ~~~~-----------------------------------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
+... ...+++|||+++.||+++|+.+.+.+++..-
T Consensus 246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 321 (327)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence 5321 1146889999999999999999999987653
No 153
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.82 E-value=2.2e-19 Score=143.81 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=102.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCcccceeeeeEEEEEE-------------C--C----eEEEEEE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDT---FISSSSRKSTLGLDNFNKEYKV-------------D--D----RSIQMQL 63 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~---~~~~~~~~~t~~~~~~~~~~~~-------------~--~----~~~~~~i 63 (189)
.+.++|+++|..++|||||+++|.+.. +..+..+.-|+...+....+.. . + ....+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 556899999999999999999998432 2222222224433332222211 0 1 1368999
Q ss_pred EeCCCccccccchHHHhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc-----------
Q psy17231 64 WDTGGMERVASITSSYYKFAEAAILVFSLDN----AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN----------- 128 (189)
Q Consensus 64 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~----------- 128 (189)
||+||+++|.......+..+|++++|+|+++ +++.+.+..| ... ...|+++|+||+|+..
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII-GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH-TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc-CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 9999999887766667778899999999985 4455544332 222 2468999999988642
Q ss_pred ---------cCCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 129 ---------LISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 129 ---------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
...+++++||++|.|++++++++.+.+.
T Consensus 163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 1237999999999999999999887664
No 154
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=134.39 Aligned_cols=150 Identities=13% Similarity=0.061 Sum_probs=95.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc-----------ccc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER-----------VAS 74 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-----------~~~ 74 (189)
...++|+++|++|||||||+|+|.+..+.....+..++..........+.+ ..+.+|||||..+ +..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 456999999999999999999999888755443222333344455555655 4779999999543 223
Q ss_pred chHHHhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CC
Q psy17231 75 ITSSYYKFAEAAILVFSLDNAAS--FHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------IS 131 (189)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~ 131 (189)
.....++.++++++|+|+++... ...+..+...+... ...|+++|+||+|+... ..
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence 33445567899999999875432 22222222222111 24799999999886321 12
Q ss_pred ceEEeeccCC-----CCHHHHHHHHHHHHHHh
Q psy17231 132 STYKTSCKTG-----EGVEEMFADIGRQLILS 158 (189)
Q Consensus 132 ~~~~~Sa~~~-----~~i~~~~~~i~~~i~~~ 158 (189)
.|+.+++..+ .++.++|+.+.+.+.+.
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 184 RYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 5666666543 68899999887777654
No 155
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.82 E-value=1.3e-19 Score=135.90 Aligned_cols=152 Identities=12% Similarity=0.051 Sum_probs=96.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc--------ccccch
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME--------RVASIT 76 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~ 76 (189)
..+.++|+++|.+|||||||+|++.+........................++ ..+.+|||||.. ++....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 4568999999999999999999999877644332121111133333444554 578999999973 332222
Q ss_pred HHH----hcCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhC-CCCcEEEEeeccccccc---------------------
Q psy17231 77 SSY----YKFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHNL--------------------- 129 (189)
Q Consensus 77 ~~~----~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~-~~~p~ivv~nK~d~~~~--------------------- 129 (189)
... .+.+|++++|+|+++... ...+..|+..+.... .+.|++++.||.|+...
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 222 389999999999985321 122233443333221 36899999999987431
Q ss_pred CCceEEeeccC-----CCCHHHHHHHHHHHHHHh
Q psy17231 130 ISSTYKTSCKT-----GEGVEEMFADIGRQLILS 158 (189)
Q Consensus 130 ~~~~~~~Sa~~-----~~~i~~~~~~i~~~i~~~ 158 (189)
...|+..+++. +.+++++++.+.+.+.+.
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 22566666554 689999999998888764
No 156
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.82 E-value=3.7e-20 Score=142.66 Aligned_cols=145 Identities=19% Similarity=0.140 Sum_probs=100.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcc-c--------cccc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGME-R--------VASI 75 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~--------~~~~ 75 (189)
..+..+|+++|++|+|||||+|+|.+..+........+. .......+..+ ...+.+|||||+. . +...
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tT-r~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~ 81 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTT-RHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKA 81 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCC-SSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcc-eeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHH
Confidence 345568999999999999999999987653222111121 12222233333 3578999999987 2 3333
Q ss_pred hHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--c-------------C-CceEEeecc
Q psy17231 76 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN--L-------------I-SSTYKTSCK 139 (189)
Q Consensus 76 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~--~-------------~-~~~~~~Sa~ 139 (189)
....++.+|++++|+|+++ +.....|+...... .+.|+++++||.|+.. . . ..++++||+
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~-~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE-GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS-SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred HHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh-cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence 4556778899999999976 33334455443332 3799999999998754 1 1 258999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy17231 140 TGEGVEEMFADIGRQLI 156 (189)
Q Consensus 140 ~~~~i~~~~~~i~~~i~ 156 (189)
+|.|++++++.+.+.+.
T Consensus 158 ~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTTTHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 99999999999887543
No 157
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.82 E-value=1.5e-19 Score=141.76 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=87.2
Q ss_pred eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhC--CCCcEEEEeecc
Q psy17231 57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLD----------NAASFHVLSQHLLEIVTYA--ENAKIFLCGNNE 124 (189)
Q Consensus 57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~ 124 (189)
..+.+++|||+|++.+...|..++++++++++|||++ +.++|++...|+..+.... ++.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5688999999999999999999999999999999998 7889999999999887653 689999999998
Q ss_pred ccccc--------------------------------------------------CC--ceEEeeccCCCCHHHHHHHHH
Q psy17231 125 QCHNL--------------------------------------------------IS--STYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 125 d~~~~--------------------------------------------------~~--~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
|+... .. .+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 86210 01 258999999999999999999
Q ss_pred HHHHHhh
Q psy17231 153 RQLILSN 159 (189)
Q Consensus 153 ~~i~~~~ 159 (189)
+.+.+..
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 158
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.82 E-value=8.1e-20 Score=142.02 Aligned_cols=100 Identities=20% Similarity=0.221 Sum_probs=87.8
Q ss_pred EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhC--CCCcEEEEeeccc
Q psy17231 58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLD----------NAASFHVLSQHLLEIVTYA--ENAKIFLCGNNEQ 125 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~d 125 (189)
.+.+++||++|++.++..|..++++++++++|||++ +.+++.+...|+..+.... .+.|+++++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 478999999999999999999999999999999998 7888999989998887753 6899999999988
Q ss_pred cccc---------------------------------------------------------CCceEEeeccCCCCHHHHH
Q psy17231 126 CHNL---------------------------------------------------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 126 ~~~~---------------------------------------------------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
+... ...+++|||++..||+.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 5320 1246889999999999999
Q ss_pred HHHHHHHHH
Q psy17231 149 ADIGRQLIL 157 (189)
Q Consensus 149 ~~i~~~i~~ 157 (189)
+.+.+.+++
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999987
No 159
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.82 E-value=3.3e-20 Score=148.40 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=96.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhC--------CCCC-----CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYD--------TFIS-----SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER 71 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~--------~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 71 (189)
..+.++|+++|.+++|||||+++|... .+.. ......+.|.++......+......+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456799999999999999999999863 1110 000011223333333334433346789999999999
Q ss_pred cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc---------------------
Q psy17231 72 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL--------------------- 129 (189)
Q Consensus 72 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~--------------------- 129 (189)
|.......+..+|++++|+|+++... .+...|+..+... ++| +++++||+|+...
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 98888888999999999999987643 3445566555544 688 8999999997520
Q ss_pred --CCceEEeeccCCCC
Q psy17231 130 --ISSTYKTSCKTGEG 143 (189)
Q Consensus 130 --~~~~~~~Sa~~~~~ 143 (189)
..+++++||++|.|
T Consensus 165 ~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 165 GDEVPVIRGSALLALE 180 (405)
T ss_dssp TTTSCEEECCHHHHHH
T ss_pred ccCCCEEEccHHHhhh
Confidence 14799999999987
No 160
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.82 E-value=3.7e-20 Score=140.90 Aligned_cols=147 Identities=14% Similarity=0.165 Sum_probs=83.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCC------CcccceeeeeEEEEEECCeEEEEEEEeCCCcccc-------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSS------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV------- 72 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------- 72 (189)
...++|+++|.+|+|||||+|+|.......... ..+|++.+.....+..++..+.+.+|||||..+.
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 346899999999999999999987665433321 1455555655555555565679999999997432
Q ss_pred ccch-------HHHhc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc----
Q psy17231 73 ASIT-------SSYYK-------------FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN---- 128 (189)
Q Consensus 73 ~~~~-------~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~---- 128 (189)
..+. ..++. .+|+++++++.++......-..++..+.. ++|+|+|+||+|+..
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~ 162 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC 162 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHH
Confidence 1111 22222 26788888876653211122233333333 799999999988531
Q ss_pred -------------cCCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231 129 -------------LISSTYKTSCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 129 -------------~~~~~~~~Sa~~~~~i~~~~~~i~~~i 155 (189)
...+++.+||+++.|++++++++.+.+
T Consensus 163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 123788999999999999998887654
No 161
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.81 E-value=9.3e-21 Score=154.25 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=101.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEA 85 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 85 (189)
.+..+|+++|++++|||||+++|....+.....+..|. +.....+.+++ ..+.+|||||++.|...+...+..+|+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~--~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~ 77 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQ--HIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDI 77 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCC--CSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeE--eEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCE
Confidence 46789999999999999999999876554332212222 22222222333 467999999999999988888999999
Q ss_pred EEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------------------CCceEEeeccCC
Q psy17231 86 AILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL---------------------ISSTYKTSCKTG 141 (189)
Q Consensus 86 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~---------------------~~~~~~~Sa~~~ 141 (189)
+++|+|+++ +++.+.+ ..+.. .++|+++++||+|+... ..+++++||++|
T Consensus 78 aILVVda~~g~~~qT~e~l----~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG 151 (501)
T 1zo1_I 78 VVLVVAADDGVMPQTIEAI----QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAG 151 (501)
T ss_dssp EEEEEETTTBSCTTTHHHH----HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTC
T ss_pred EEEEeecccCccHHHHHHH----HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeec
Confidence 999999987 4444333 22222 37999999999987421 026899999999
Q ss_pred CCHHHHHHHHHH
Q psy17231 142 EGVEEMFADIGR 153 (189)
Q Consensus 142 ~~i~~~~~~i~~ 153 (189)
.|++++|+++..
T Consensus 152 ~gI~eLle~I~~ 163 (501)
T 1zo1_I 152 TGIDELLDAILL 163 (501)
T ss_dssp TTCTTHHHHTTT
T ss_pred cCcchhhhhhhh
Confidence 999999999864
No 162
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.80 E-value=4.4e-21 Score=154.76 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=96.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhC--CCCCC-----------------------------CCCcccceeeeeEEEEE
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYD--TFISS-----------------------------SSRKSTLGLDNFNKEYK 53 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~--~~~~~-----------------------------~~~~~t~~~~~~~~~~~ 53 (189)
+++.++|+++|.+++|||||+++|... .+... ..+..|+ +... ..
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi--~~~~--~~ 78 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTI--NLTF--MR 78 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC---------------CE
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCcee--EeeE--EE
Confidence 356799999999999999999999764 22110 0011122 2211 22
Q ss_pred ECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhC-----CC-CcEEEEeeccccc
Q psy17231 54 VDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----EN-AKIFLCGNNEQCH 127 (189)
Q Consensus 54 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~-~p~ivv~nK~d~~ 127 (189)
+......+.+|||||+++|.......+..+|++++|+|+++ .+|+....|..+..+.. .+ .|+++++||+|+.
T Consensus 79 ~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 79 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred EecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 23334679999999999998888888999999999999998 67775544333322221 24 4699999999975
Q ss_pred cc--------------------------CCceEEeeccCCCCHHHHHH
Q psy17231 128 NL--------------------------ISSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 128 ~~--------------------------~~~~~~~Sa~~~~~i~~~~~ 149 (189)
.. ..+++++||++|.|+.++++
T Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 158 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 41 13699999999999986654
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.80 E-value=1.1e-19 Score=145.12 Aligned_cols=147 Identities=13% Similarity=0.104 Sum_probs=100.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC-------CCC-----CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDT-------FIS-----SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS 74 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~-------~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 74 (189)
+.++|+++|.+++|||||+++|.... +.. ........+.+.......+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 57899999999999999999998631 110 000011122222223333433346789999999999887
Q ss_pred chHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeecccccc--------------------c---C
Q psy17231 75 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHN--------------------L---I 130 (189)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~--------------------~---~ 130 (189)
.....+..+|++++|+|+++....+ ...++..+... ++| +++++||+|+.. . .
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 7778889999999999998854322 22333333333 688 789999999752 0 1
Q ss_pred CceEEeeccCCCC----------HHHHHHHHHHHHH
Q psy17231 131 SSTYKTSCKTGEG----------VEEMFADIGRQLI 156 (189)
Q Consensus 131 ~~~~~~Sa~~~~~----------i~~~~~~i~~~i~ 156 (189)
.+++++||++|.| ++++++.+.+.+.
T Consensus 159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 3889999999765 8888888776554
No 164
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.80 E-value=3.2e-19 Score=140.89 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEE
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 89 (189)
+|+++|.+++|||||+++|. .+..|++ ... ..+......+.+|||||+++|.......+..+|++++|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~--~~~--~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailV 90 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSD--ITM--YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLC 90 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESS--SEE--EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEE--eeE--EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEE
Confidence 89999999999999999998 1122332 222 22333345789999999999987777788999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhCCCCcE-EEEee-ccccccc--------------------CCceEE--eeccC---CC
Q psy17231 90 FSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGN-NEQCHNL--------------------ISSTYK--TSCKT---GE 142 (189)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~n-K~d~~~~--------------------~~~~~~--~Sa~~---~~ 142 (189)
+| + ...+.+...++..+... ++|. |+++| |+|+ .. ..++++ +||++ +.
T Consensus 91 vd-~-~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 91 IP-P-QGLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp EC-T-TCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred Ec-C-CCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 99 4 33445566666655554 6777 88999 9996 21 137899 99999 99
Q ss_pred CHHHHHHHHHHHHHHh
Q psy17231 143 GVEEMFADIGRQLILS 158 (189)
Q Consensus 143 ~i~~~~~~i~~~i~~~ 158 (189)
|++++++.+.+.+...
T Consensus 166 gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 166 GVDELKARINEVAEKI 181 (370)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcccc
Confidence 9999999998887654
No 165
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.79 E-value=5.9e-20 Score=144.77 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=82.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCC-CC------CcccceeeeeEEEEEECCeEEEEEEEeCCCc-------ccc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISS-SS------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM-------ERV 72 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~-~~------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~ 72 (189)
..++|+++|++|+|||||+++|.+...... .. ..+|++.......+...+....+.+|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 468999999999999999999875433221 11 1245444444444444566678999999998 556
Q ss_pred ccchH-------HHhcCCc-----------EEEEEEeCCC-hhhHHHHH-HHHHHHHHhCCCCcEEEEeecccccc----
Q psy17231 73 ASITS-------SYYKFAE-----------AAILVFSLDN-AASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHN---- 128 (189)
Q Consensus 73 ~~~~~-------~~~~~~~-----------~~i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~---- 128 (189)
..+.. .+++.++ +.+++|++++ ..++..+. .|+..+ ..++|+|+|+||+|+..
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev 192 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKER 192 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHH
Confidence 66654 5554433 2346666665 45555554 344333 25799999999988632
Q ss_pred -------------cCCceEEeeccCCCCHHHHHHHHHHHHHHhh
Q psy17231 129 -------------LISSTYKTSCKTGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 129 -------------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~ 159 (189)
...+++++||++|.+ ++.|.++.+.+.+..
T Consensus 193 ~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 193 ERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp HHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 134889999999999 889999888886543
No 166
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.79 E-value=2.4e-19 Score=137.60 Aligned_cols=147 Identities=15% Similarity=0.194 Sum_probs=95.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCC----Ccccc-----------------e---eee--------------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSS----RKSTL-----------------G---LDN-------------- 47 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~----~~~t~-----------------~---~~~-------------- 47 (189)
...++|+++|.+|||||||+|+|.+..+.+... ..++. | .++
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 456799999999999999999999887642210 11210 0 000
Q ss_pred ---------eEEEEEEC-CeEEEEEEEeCCCccc-------------cccchHHHhcCCcEEE-EEEeCCChhhHHHHHH
Q psy17231 48 ---------FNKEYKVD-DRSIQMQLWDTGGMER-------------VASITSSYYKFAEAAI-LVFSLDNAASFHVLSQ 103 (189)
Q Consensus 48 ---------~~~~~~~~-~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~ 103 (189)
....+... .....+.+|||||... +......+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00000000 0024789999999642 3345566777888766 6999987544333333
Q ss_pred HHHHHHHhCCCCcEEEEeeccccccc------------------CCceEEeeccCCCCHHHHHHHHHHH
Q psy17231 104 HLLEIVTYAENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 104 ~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~~~~~~i~~~ 154 (189)
++..+.. .+.|+++|+||+|+... ..+++++||++|.|++++++++.+.
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 4444332 37999999999886421 1256789999999999999998773
No 167
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.79 E-value=3.5e-19 Score=143.65 Aligned_cols=142 Identities=16% Similarity=0.125 Sum_probs=94.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCC---CCC-------CCCcccc-------------------eeeeeEEEEEECC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTF---ISS-------SSRKSTL-------------------GLDNFNKEYKVDD 56 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~---~~~-------~~~~~t~-------------------~~~~~~~~~~~~~ 56 (189)
.+.++|+++|.+++|||||+++|..... ... .....+. |.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3458999999999999999999976531 000 0000110 1111112222223
Q ss_pred eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc--------
Q psy17231 57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN-------- 128 (189)
Q Consensus 57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~-------- 128 (189)
....+.+|||||+++|.......+..+|++++|+|+++... .+...++..+... ...|+++|+||+|+..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~~ 179 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL-GIKHIVVAINKMDLNGFDERVFES 179 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT-TCCEEEEEEECTTTTTSCHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-CCCeEEEEEEcCcCCcccHHHHHH
Confidence 34678999999999998888888999999999999988542 2334444443333 2246999999999753
Q ss_pred -----------cC-----CceEEeeccCCCCHHHHHH
Q psy17231 129 -----------LI-----SSTYKTSCKTGEGVEEMFA 149 (189)
Q Consensus 129 -----------~~-----~~~~~~Sa~~~~~i~~~~~ 149 (189)
.. .+++++||++|.|++++++
T Consensus 180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 11 3689999999999998543
No 168
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.78 E-value=2.7e-18 Score=129.78 Aligned_cols=120 Identities=20% Similarity=0.227 Sum_probs=84.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhc---
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYK--- 81 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~--- 81 (189)
.++.++|+++|.+|+|||||+++|.+..+.......++ ........+..++ ..+.+|||||+.++......+++
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~ 109 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE-GLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIK 109 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-ceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHH
Confidence 35789999999999999999999998775333322222 1233334445554 48899999999888765544443
Q ss_pred ------CCcEEEEEEeCCChhhHHHH-HHHHHHHHHhC-C--CCcEEEEeecccccc
Q psy17231 82 ------FAEAAILVFSLDNAASFHVL-SQHLLEIVTYA-E--NAKIFLCGNNEQCHN 128 (189)
Q Consensus 82 ------~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~-~--~~p~ivv~nK~d~~~ 128 (189)
.++++++|++++... +... ..|+..+.... . ..|+++|+||+|+..
T Consensus 110 ~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 110 GFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999998755 4333 46666666543 2 259999999999853
No 169
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.78 E-value=3.3e-18 Score=144.84 Aligned_cols=151 Identities=13% Similarity=0.141 Sum_probs=105.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeee------EEEEEE--------------------------
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNF------NKEYKV-------------------------- 54 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~------~~~~~~-------------------------- 54 (189)
..++|+|+|.+|+|||||+|+|.+..+.+......|...... ..+..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 568999999999999999999998775443322222100000 001111
Q ss_pred --------------------CCeE--EEEEEEeCCCccc---cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q psy17231 55 --------------------DDRS--IQMQLWDTGGMER---VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIV 109 (189)
Q Consensus 55 --------------------~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 109 (189)
.... ..+.+|||||... .......++..+|++++|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0000 2589999999765 33455677889999999999998877777766654443
Q ss_pred HhCCCCcEEEEeeccccccc--------------------------------------CCceEEeecc------------
Q psy17231 110 TYAENAKIFLCGNNEQCHNL--------------------------------------ISSTYKTSCK------------ 139 (189)
Q Consensus 110 ~~~~~~p~ivv~nK~d~~~~--------------------------------------~~~~~~~Sa~------------ 139 (189)
.. +.|+++|+||+|+... ..+++.|||+
T Consensus 228 ~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~ 305 (695)
T 2j69_A 228 GR--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQA 305 (695)
T ss_dssp TS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTC
T ss_pred hh--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchh
Confidence 32 6899999999986321 1268999999
Q ss_pred --CCCCHHHHHHHHHHHHHHhh
Q psy17231 140 --TGEGVEEMFADIGRQLILSN 159 (189)
Q Consensus 140 --~~~~i~~~~~~i~~~i~~~~ 159 (189)
++.|++++++++.+.+....
T Consensus 306 ~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 306 DLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp CCTTSSHHHHHHHHHHHHHHTH
T ss_pred hhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999988775543
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.77 E-value=1.3e-19 Score=146.95 Aligned_cols=137 Identities=17% Similarity=0.153 Sum_probs=94.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhC--CCCCC-----------------------------CCCcccceeeeeEEEEE
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYD--TFISS-----------------------------SSRKSTLGLDNFNKEYK 53 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~--~~~~~-----------------------------~~~~~t~~~~~~~~~~~ 53 (189)
+++.++|+++|.+++|||||+++|... .+... ..+..|+ +.....+.
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi--~~~~~~~~ 81 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITI--DIALWKFE 81 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCC--SCSCEEEE
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEE--EEEEEEEe
Confidence 467899999999999999999999764 11100 0011122 22222223
Q ss_pred ECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhCCCCc-EEEEeecccc
Q psy17231 54 VDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SFH---VLSQHLLEIVTYAENAK-IFLCGNNEQC 126 (189)
Q Consensus 54 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~p-~ivv~nK~d~ 126 (189)
.....+.+|||||+++|.......+..+|++++|+|+++.. +|+ +...++..+.. .++| +|+|+||+|+
T Consensus 82 --~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl 157 (458)
T 1f60_A 82 --TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDS 157 (458)
T ss_dssp --CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGG
T ss_pred --cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEcccc
Confidence 33467999999999999888888899999999999998763 332 23333332222 2565 9999999997
Q ss_pred ccc------------------------CCceEEeeccCCCCHHHH
Q psy17231 127 HNL------------------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 127 ~~~------------------------~~~~~~~Sa~~~~~i~~~ 147 (189)
... ..+++++||++|.|+.++
T Consensus 158 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 158 VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 520 147999999999999754
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.77 E-value=1.3e-19 Score=147.23 Aligned_cols=139 Identities=16% Similarity=0.134 Sum_probs=82.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC--CCCC-----------------------------CCCCcccceeeeeEEEEEE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD--TFIS-----------------------------SSSRKSTLGLDNFNKEYKV 54 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~--~~~~-----------------------------~~~~~~t~~~~~~~~~~~~ 54 (189)
.+.++|+++|..++|||||+++|... .+.. +..+..|++ .....+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~--~~~~~~~~ 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVE--VGRAYFET 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEEC
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEE--eeeEEEec
Confidence 45689999999999999999999642 1110 000112221 11122333
Q ss_pred CCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhC-CCCc-EEEEeeccccccc
Q psy17231 55 DDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYA-ENAK-IFLCGNNEQCHNL 129 (189)
Q Consensus 55 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~p-~ivv~nK~d~~~~ 129 (189)
+ ...+.+|||||+++|.......+..+|++++|+|+++. .+|+....|...+.... .++| +|+|+||+|+...
T Consensus 119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~ 196 (467)
T 1r5b_A 119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV 196 (467)
T ss_dssp S--SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTC
T ss_pred C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCc
Confidence 3 35789999999999988888888999999999999986 34432222222222111 3677 9999999998320
Q ss_pred ----------------------------CCceEEeeccCCCCHHHHH
Q psy17231 130 ----------------------------ISSTYKTSCKTGEGVEEMF 148 (189)
Q Consensus 130 ----------------------------~~~~~~~Sa~~~~~i~~~~ 148 (189)
..+++++||++|.|+++++
T Consensus 197 ~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 197 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1258999999999998866
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.77 E-value=7.1e-19 Score=153.20 Aligned_cols=149 Identities=14% Similarity=0.073 Sum_probs=101.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCC-------C-----CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDT-------F-----ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV 72 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~-------~-----~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 72 (189)
.++.++|+++|.+++|||||+++|.... + .+....+.+.|.++......+......+.+|||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4567999999999999999999997631 1 011111223333333333334344568899999999999
Q ss_pred ccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccccc----------------------
Q psy17231 73 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL---------------------- 129 (189)
Q Consensus 73 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~---------------------- 129 (189)
.......+..+|++++|+|+++... .+...++..+... ++| +|+++||+|+...
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~ 449 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 449 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence 8877788899999999999988532 2334455444444 688 7899999997520
Q ss_pred -CCceEEeeccCC--------CCHHHHHHHHHHHHH
Q psy17231 130 -ISSTYKTSCKTG--------EGVEEMFADIGRQLI 156 (189)
Q Consensus 130 -~~~~~~~Sa~~~--------~~i~~~~~~i~~~i~ 156 (189)
..+++++||++| .|++++++.+.+.+.
T Consensus 450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 137899999999 468888888766543
No 173
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.76 E-value=2.7e-18 Score=141.20 Aligned_cols=117 Identities=10% Similarity=0.042 Sum_probs=76.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCC------------------CCCCcccceeeeeEEEEEECCeEEEEEEEeCCC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFIS------------------SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGG 68 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g 68 (189)
+..+|+++|.+|+|||||+++|....-.. ......+.|.+.......+....+.+++|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 46899999999999999999998632100 000011222222222222222346889999999
Q ss_pred ccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC 126 (189)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~ 126 (189)
+.+|.......++.+|++++|+|+++.... +...++..+.. .++|+++++||+|+
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~~~--~~ipiivviNK~Dl 146 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVTRL--RDTPILTFMNKLDR 146 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHHTT--TTCCEEEEEECTTS
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHHHH--cCCCEEEEEcCcCC
Confidence 999988888899999999999999875321 22223322222 37999999999774
No 174
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.4e-19 Score=148.82 Aligned_cols=140 Identities=19% Similarity=0.241 Sum_probs=94.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----------------------------cccceeeeeEEEEEEC
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSR-----------------------------KSTLGLDNFNKEYKVD 55 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~-----------------------------~~t~~~~~~~~~~~~~ 55 (189)
..+.++|+++|.+|+|||||+++|........... .+.+..+.....+..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~- 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence 35679999999999999999999986532111100 011111222223333
Q ss_pred CeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231 56 DRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SF---HVLSQHLLEIVTYAENAKIFLCGNNEQCHNL 129 (189)
Q Consensus 56 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~ 129 (189)
....+.+|||||+++|.......+..+|++++|+|+++.. +| .+....+ .+.......|+|+|+||+|+...
T Consensus 243 -~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l-~~~~~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 243 -HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHM-LLASSLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp -SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHH-HHHHTTTCCEEEEEEECTTTTTT
T ss_pred -CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHH-HHHHHcCCCeEEEEEecccccch
Confidence 3467899999999999888888899999999999998743 11 1111122 22222223569999999997541
Q ss_pred ------------------------CCceEEeeccCCCCHHHH
Q psy17231 130 ------------------------ISSTYKTSCKTGEGVEEM 147 (189)
Q Consensus 130 ------------------------~~~~~~~Sa~~~~~i~~~ 147 (189)
..+++++||++|.|++++
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 237899999999999876
No 175
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.76 E-value=1e-17 Score=127.11 Aligned_cols=136 Identities=20% Similarity=0.161 Sum_probs=87.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHH-------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSS------- 78 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~------- 78 (189)
.+.++|+++|.+|+|||||+|+|.+..+........+. ........... ...+.+|||||+.++......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t-~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~ 113 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG-PRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKS 113 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCC-SSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcc-eeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHH
Confidence 45799999999999999999999987753322222221 12222223333 467899999999876543321
Q ss_pred --HhcCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhC-CC--CcEEEEeecccccccCCceEEeeccCCCCHHHHHHHHH
Q psy17231 79 --YYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYA-EN--AKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 79 --~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~-~~--~p~ivv~nK~d~~~~~~~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
..+.+|++++|+|++.. ++... ..|+..+.... .+ .|+++|+||+|+... .+..+++..+...
T Consensus 114 ~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~----------~~~~~~~~~~~~~ 182 (270)
T 1h65_A 114 FLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP----------DGLPYDEFFSKRS 182 (270)
T ss_dssp HTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG----------GGCCHHHHHHHHH
T ss_pred HhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc----------CCCCHHHHHHHHH
Confidence 12368999999999764 24333 46776666543 22 699999999997532 2345666554444
Q ss_pred HHH
Q psy17231 153 RQL 155 (189)
Q Consensus 153 ~~i 155 (189)
..+
T Consensus 183 ~~l 185 (270)
T 1h65_A 183 EAL 185 (270)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 176
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.76 E-value=4.3e-18 Score=144.04 Aligned_cols=115 Identities=13% Similarity=0.100 Sum_probs=81.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC--CCC------CC----------CCCcccceeeeeEEEEEECCeEEEEEEEeCC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD--TFI------SS----------SSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~--~~~------~~----------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 67 (189)
.+..+|+|+|.+|+|||||+++|... .+. .. ..+..|+. .....+.+. .+.+++||||
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~--~~~~~~~~~--~~~i~liDTP 85 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT--AAVTTCFWK--DHRINIIDTP 85 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEET--TEEEEEECCC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc--cceEEEEEC--CeEEEEEECc
Confidence 44689999999999999999999732 110 00 01122221 222233333 4688999999
Q ss_pred CccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127 (189)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~ 127 (189)
|+.+|...+...++.+|++++|+|+++..++.....|.. +... ++|+++|+||+|+.
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~--~~p~ivviNKiD~~ 142 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY--KVPRIAFANKMDKT 142 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT--TCCEEEEEECTTST
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc--CCCEEEEEECCCcc
Confidence 999999889999999999999999998777766665553 3333 79999999997753
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.75 E-value=4.8e-18 Score=123.84 Aligned_cols=140 Identities=13% Similarity=0.157 Sum_probs=89.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc----------ccch
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV----------ASIT 76 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~ 76 (189)
+..+|+++|++|||||||++++.+..+.... .++.|.......+.+.+ .+.+||+||.... ....
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~--~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLART--SKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC---------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccc--cCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 4679999999999999999999876643222 33444344333333333 4689999997431 2122
Q ss_pred HHHh---cCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhCCCCcEEEEeeccccccc-------------------CCc
Q psy17231 77 SSYY---KFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------------ISS 132 (189)
Q Consensus 77 ~~~~---~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------------~~~ 132 (189)
..++ ..++++++|+|+++..++. .+..|+. . .+.|+++|+||+|.... ...
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 2233 4678999999998765442 2333332 2 37999999999885321 125
Q ss_pred eEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 133 TYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 133 ~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
++++||+++.|++++++++.+.+.
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC
T ss_pred eEEEeecCCCCHHHHHHHHHHHHh
Confidence 688999999999999999877653
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.74 E-value=4.1e-19 Score=147.91 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=75.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCC---------------------------CCCCCcccceeeeeEEEEEECCe
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFI---------------------------SSSSRKSTLGLDNFNKEYKVDDR 57 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~---------------------------~~~~~~~t~~~~~~~~~~~~~~~ 57 (189)
..+.++|+++|.+++|||||+++|...... +........|.+.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 355789999999999999999999532100 00000001122222222223333
Q ss_pred EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhCCCCc-EEEEeeccccccc-
Q psy17231 58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SF---HVLSQHLLEIVTYAENAK-IFLCGNNEQCHNL- 129 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~~~- 129 (189)
...+.||||||+++|.......+..+|++++|+|+++.. ++ .+....+..+... ++| +|+|+||+|+...
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTTC
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEecccccccc
Confidence 467899999999999888888889999999999998532 11 1111222222222 565 9999999997430
Q ss_pred -------------------C-----CceEEeeccCCCCHH
Q psy17231 130 -------------------I-----SSTYKTSCKTGEGVE 145 (189)
Q Consensus 130 -------------------~-----~~~~~~Sa~~~~~i~ 145 (189)
. .+++++||++|.|+.
T Consensus 332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 1 168999999999998
No 179
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.73 E-value=3e-17 Score=138.49 Aligned_cols=124 Identities=15% Similarity=0.055 Sum_probs=80.7
Q ss_pred CCCCC-CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-----------Ccc---cceeeeeEEEEEECCeEEEEEEEe
Q psy17231 1 MASIK-VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSS-----------RKS---TLGLDNFNKEYKVDDRSIQMQLWD 65 (189)
Q Consensus 1 m~~~~-~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~-----------~~~---t~~~~~~~~~~~~~~~~~~~~i~D 65 (189)
|.+.. .+..+|+|+|+.|+|||||+++|.......... ..+ ..+..+......+....+.+++||
T Consensus 1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 44444 345789999999999999999998433211000 000 011122222222222346889999
Q ss_pred CCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231 66 TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127 (189)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~ 127 (189)
|||+.+|.......++.+|++++|+|+++.... +...++..+... ++|+++++||+|+.
T Consensus 81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~-qt~~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 81 APGYGDFVGEIRGALEAADAALVAVSAEAGVQV-GTERAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCH-HHHHHHHHHHHT--TCCEEEEEECGGGC
T ss_pred CCCccchHHHHHHHHhhcCcEEEEEcCCcccch-hHHHHHHHHHHc--cCCEEEEecCCchh
Confidence 999999988888999999999999998765432 233455454443 79999999998863
No 180
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.73 E-value=5e-17 Score=129.79 Aligned_cols=148 Identities=16% Similarity=0.077 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc----ccchH---HHhc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV----ASITS---SYYK 81 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~---~~~~ 81 (189)
..+.|+|++|+|||||++++.+........+..|. ......+..++ ...+.+||+||..+. ..+.. ....
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl--~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e 234 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTL--SPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIA 234 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSS--CCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCccccee--cceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence 35889999999999999999876432222222222 22223344433 246799999997432 22222 2345
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhC---CCCcEEEEeeccccccc-------------CCceEEeeccCCCCHH
Q psy17231 82 FAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNNEQCHNL-------------ISSTYKTSCKTGEGVE 145 (189)
Q Consensus 82 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~d~~~~-------------~~~~~~~Sa~~~~~i~ 145 (189)
.++.+++|+|++ ...+.++..|..++.... ...|.++|+||+|.... ..+++.+||+++.|++
T Consensus 235 ra~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 235 RTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp SSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 789999999998 666778888877776653 36899999999886421 2378999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy17231 146 EMFADIGRQLILSNR 160 (189)
Q Consensus 146 ~~~~~i~~~i~~~~~ 160 (189)
++++++.+.+.+...
T Consensus 314 eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 314 ALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999876543
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.71 E-value=1.1e-16 Score=135.61 Aligned_cols=116 Identities=9% Similarity=0.027 Sum_probs=80.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC--CCCCC------------C----CCcccceeeeeEEEEEEC-----CeEEEEE
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD--TFISS------------S----SRKSTLGLDNFNKEYKVD-----DRSIQMQ 62 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~--~~~~~------------~----~~~~t~~~~~~~~~~~~~-----~~~~~~~ 62 (189)
.+..+|+|+|..|+|||||+++|... .+... . .+..|+. .....+.+. +..+.++
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITIT--SAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceee--eceEEEEECCccccCCceeEE
Confidence 45689999999999999999999743 11100 0 0111221 111222222 2347899
Q ss_pred EEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231 63 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC 126 (189)
Q Consensus 63 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~ 126 (189)
+|||||+.+|.......++.+|++++|+|+++.........|. .+.. .++|+++|+||+|+
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~--~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK--YKVPRIAFVNKMDR 146 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH--cCCCEEEEEeCCCc
Confidence 9999999999888899999999999999999876554444443 3333 37999999999764
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.71 E-value=8.5e-17 Score=136.20 Aligned_cols=114 Identities=12% Similarity=0.127 Sum_probs=80.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh--CCCCCC---------C-------CCcccceeeeeEEEEEECCeEEEEEEEeCC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY--DTFISS---------S-------SRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~--~~~~~~---------~-------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~ 67 (189)
.+..+|+|+|.+|+|||||+++|.. +.+... . .+..|+ ......+.+. ...+++||||
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi--~~~~~~~~~~--~~~i~liDTP 83 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITI--TSAATTAAWE--GHRVNIIDTP 83 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC---------------------------CCSEEEEEET--TEEEEEECCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceE--eeeeEEEEEC--CeeEEEEECc
Confidence 4468999999999999999999984 222100 0 011111 1122233344 3688999999
Q ss_pred CccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC 126 (189)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~ 126 (189)
|+.+|.......++.+|++++|+|+++..+......|. .+... ++|+++|+||+|+
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~--~~p~ilviNK~Dl 139 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY--GVPRIVFVNKMDK 139 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT--TCCEEEEEECTTS
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc--CCCEEEEEECCCc
Confidence 99999988899999999999999999876666655554 34443 7999999999774
No 183
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.70 E-value=7.1e-17 Score=126.95 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=88.1
Q ss_pred ccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHH
Q psy17231 41 STLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVT 110 (189)
Q Consensus 41 ~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~ 110 (189)
+|+|++. ..+..+ .+.+.+||++|++.+...|..++++++++|+|||+++ ..++++...|+..+..
T Consensus 187 ~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 187 PTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp CCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred CccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 4555543 334444 3789999999999999999999999999999999999 7899999999998886
Q ss_pred hC--CCCcEEEEeecccccc------------------------------------------cCCceEEeeccCCCCHHH
Q psy17231 111 YA--ENAKIFLCGNNEQCHN------------------------------------------LISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 111 ~~--~~~p~ivv~nK~d~~~------------------------------------------~~~~~~~~Sa~~~~~i~~ 146 (189)
.. .+.|+|+++||+|+.. ....+++|||+++.||++
T Consensus 263 ~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 53 6899999999988641 112568999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy17231 147 MFADIGRQLILSN 159 (189)
Q Consensus 147 ~~~~i~~~i~~~~ 159 (189)
+|+++.+.+.+..
T Consensus 343 vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 343 VFRDVKDTILHDN 355 (362)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 184
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.69 E-value=1.8e-16 Score=125.83 Aligned_cols=115 Identities=15% Similarity=0.181 Sum_probs=94.4
Q ss_pred cceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHh
Q psy17231 42 TLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVTY 111 (189)
Q Consensus 42 t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~ 111 (189)
|+|++. ..+.+++ +.+++||++|++.+...|..++++++++++|||+++ ..+|+++..|+..+...
T Consensus 204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 445443 3344443 789999999999999999999999999999999999 89999999999998875
Q ss_pred C--CCCcEEEEeecccccc------c----------------------------------------------------CC
Q psy17231 112 A--ENAKIFLCGNNEQCHN------L----------------------------------------------------IS 131 (189)
Q Consensus 112 ~--~~~p~ivv~nK~d~~~------~----------------------------------------------------~~ 131 (189)
. .+.|++||+||+|+.. . ..
T Consensus 280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~ 359 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC 359 (402)
T ss_dssp TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence 3 6899999999988521 0 01
Q ss_pred ceEEeeccCCCCHHHHHHHHHHHHHHhhh
Q psy17231 132 STYKTSCKTGEGVEEMFADIGRQLILSNR 160 (189)
Q Consensus 132 ~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~ 160 (189)
.+++|||+++.||+++|.++.+.+.+...
T Consensus 360 ~~~~TSA~d~~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 360 YPHFTCAVDTENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence 25689999999999999999988876653
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.69 E-value=2.4e-16 Score=121.77 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=63.6
Q ss_pred EEEEEEeCCCccc-------------cccchHHHhcCCcEEEEEEeCCChhhH-HHHHHHHHHHHHhCCCCcEEEEeecc
Q psy17231 59 IQMQLWDTGGMER-------------VASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNNE 124 (189)
Q Consensus 59 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~p~ivv~nK~ 124 (189)
..+.+|||||..+ +......++..+|++++|+|.++.... .....+...+.. .+.|+++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 4689999999754 334556778899999999997443211 111122222222 379999999998
Q ss_pred ccccc-------------C--CceEEeecc---C---CCCHHHHHHHHHHHHHH
Q psy17231 125 QCHNL-------------I--SSTYKTSCK---T---GEGVEEMFADIGRQLIL 157 (189)
Q Consensus 125 d~~~~-------------~--~~~~~~Sa~---~---~~~i~~~~~~i~~~i~~ 157 (189)
|+... . ..|+++|++ + +.|++++++.+...+..
T Consensus 209 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 209 DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred ccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 86421 0 256666554 4 78999999988777654
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.68 E-value=2.7e-17 Score=126.63 Aligned_cols=148 Identities=17% Similarity=0.172 Sum_probs=72.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC-CCCCCCC------CcccceeeeeEEEEEECCeEEEEEEEeCCCc-------ccc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD-TFISSSS------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM-------ERV 72 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~-~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~ 72 (189)
..++|+++|++|+|||||+++|.+. .++.... ..++.............+....+.+||++|+ +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4689999999999999999998765 3332220 0122221221122222344568899999998 444
Q ss_pred ccchH-------HHhcC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc----
Q psy17231 73 ASITS-------SYYKF-------------AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN---- 128 (189)
Q Consensus 73 ~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~---- 128 (189)
..+.. .+++. +++++++.+.+ ..+++.+.. ..+.......|+++|+||+|+..
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt-~~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~e~ 173 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLKER 173 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS-SSSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc-ccCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHHHH
Confidence 44433 33322 23333333322 123333321 22222334689999999988631
Q ss_pred -------------cCCceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231 129 -------------LISSTYKTSCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 129 -------------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
...++|++||++| |++++|+++.+.+.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 174 ERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 1248899999999 9999999999888644
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.66 E-value=2.4e-16 Score=124.15 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=92.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccce-eee--------------------------------------
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLG-LDN-------------------------------------- 47 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~-~~~-------------------------------------- 47 (189)
...+|+|+|++|||||||+|+|.+..+.+......|.. ...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 34599999999999999999999987643332111100 000
Q ss_pred -----------eEEEEEE-CCeEEEEEEEeCCCcccc-------------ccchHHHhcCCcEEEEEEeCCChhhHHHHH
Q psy17231 48 -----------FNKEYKV-DDRSIQMQLWDTGGMERV-------------ASITSSYYKFAEAAILVFSLDNAASFHVLS 102 (189)
Q Consensus 48 -----------~~~~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 102 (189)
....+.+ ......+.+|||||..++ ..+...+++.++++++|+|.++..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 0000000 001235799999998776 345677889999999999876543221 2
Q ss_pred HHHHHHHHhC-CCCcEEEEeeccccccc---------------CCceEEeeccCCCCHHHHHHHH
Q psy17231 103 QHLLEIVTYA-ENAKIFLCGNNEQCHNL---------------ISSTYKTSCKTGEGVEEMFADI 151 (189)
Q Consensus 103 ~~~~~~~~~~-~~~p~ivv~nK~d~~~~---------------~~~~~~~Sa~~~~~i~~~~~~i 151 (189)
.|+..+.... .+.|+|+|+||+|+... ..+|+++|++++.++++.+...
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 3333333332 47899999999886421 2378999999999888765543
No 188
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.66 E-value=1.3e-16 Score=127.07 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=47.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEE-------------------EECC-eEEEEEEEeCCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEY-------------------KVDD-RSIQMQLWDTGG 68 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~-------------------~~~~-~~~~~~i~D~~g 68 (189)
++|+++|.+|||||||+|+|.+........+..|.........+ .+++ ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999977633222222222111111111 1122 246799999999
Q ss_pred cccc----ccchH---HHhcCCcEEEEEEeCCCh
Q psy17231 69 MERV----ASITS---SYYKFAEAAILVFSLDNA 95 (189)
Q Consensus 69 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~ 95 (189)
.... ..+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8542 22222 346889999999999874
No 189
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.65 E-value=5.5e-17 Score=124.91 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=97.3
Q ss_pred HHHHHHHhCCCC-CCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChh-hHHH
Q psy17231 23 SLFRRYAYDTFI-SSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA-SFHV 100 (189)
Q Consensus 23 tli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~ 100 (189)
+|+.++..+.|. ..+ .+|+| +........++ .+.+||+ +++|..++..+++++|++++|||+++++ ++..
T Consensus 32 sl~~~~~~~~f~~~~~--~pTiG-d~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~ 103 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNL--KIYVG-DRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYI 103 (301)
T ss_dssp CEEEEEECGGGTTTTC--CCCTT-CEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHH
T ss_pred cEEEEEEcccccccCC--CCCCc-cEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHH
Confidence 678888888876 444 78888 43333322222 6899999 8899999999999999999999999997 7899
Q ss_pred HHHHHHHHHHhCCCCcEEEEeeccccccc-------------C--CceEEeeccCCCCHHHHHHHHHH
Q psy17231 101 LSQHLLEIVTYAENAKIFLCGNNEQCHNL-------------I--SSTYKTSCKTGEGVEEMFADIGR 153 (189)
Q Consensus 101 ~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-------------~--~~~~~~Sa~~~~~i~~~~~~i~~ 153 (189)
+..|+..+... ++|+++|+||+|+... . .++++|||++|.|++++|..+..
T Consensus 104 l~~~l~~~~~~--~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 104 IDKFLVLAEKN--ELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHHHT--TCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHHHC--CCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99999887653 7999999999997421 1 47999999999999999988753
No 190
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.65 E-value=8.5e-16 Score=132.53 Aligned_cols=120 Identities=15% Similarity=0.134 Sum_probs=86.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCC------------CCCC----CCCcccceeeeeEEEEE------------ECCe
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDT------------FISS----SSRKSTLGLDNFNKEYK------------VDDR 57 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~------------~~~~----~~~~~t~~~~~~~~~~~------------~~~~ 57 (189)
.+..+|+|+|..|+|||||+++|.... +.+. ..+..|+........+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 346799999999999999999997541 1110 11112322222222222 1334
Q ss_pred EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231 58 SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN 128 (189)
Q Consensus 58 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~ 128 (189)
.+.+++|||||+.+|...+...++.+|++++|+|+++..+++....|... .. .++|+++|+||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~-~~--~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA-LG--ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH-HH--TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH-HH--cCCCeEEEEECCCcch
Confidence 68899999999999999999999999999999999998777776656543 23 3799999999999864
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.64 E-value=1.7e-16 Score=124.74 Aligned_cols=146 Identities=14% Similarity=0.187 Sum_probs=87.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----cccc--------------------------------------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSR----KSTL-------------------------------------- 43 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~----~~t~-------------------------------------- 43 (189)
....+|+++|.+|||||||+|+|.+..+.+.... .++.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 3457999999999999999999998876422110 1110
Q ss_pred -----eeeeeEEEEEEC-CeEEEEEEEeCCCccc-------------cccchHHHhcCCcEEEE-EEeCCChhhHHHHHH
Q psy17231 44 -----GLDNFNKEYKVD-DRSIQMQLWDTGGMER-------------VASITSSYYKFAEAAIL-VFSLDNAASFHVLSQ 103 (189)
Q Consensus 44 -----~~~~~~~~~~~~-~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~ 103 (189)
++......+... .....+.+|||||... +..+...++..++.+++ |.|.+....-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 000000001110 0124689999999642 23344556666655555 555543221111112
Q ss_pred HHHHHHHhCCCCcEEEEeecccccccC------------------CceEEeeccCCCCHHHHHHHHHH
Q psy17231 104 HLLEIVTYAENAKIFLCGNNEQCHNLI------------------SSTYKTSCKTGEGVEEMFADIGR 153 (189)
Q Consensus 104 ~~~~~~~~~~~~p~ivv~nK~d~~~~~------------------~~~~~~Sa~~~~~i~~~~~~i~~ 153 (189)
++..+.. .+.|+++|+||+|+.... .+++++||+++.|++++++++.+
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3333222 479999999999864210 14577999999999999998876
No 192
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.62 E-value=3.4e-15 Score=123.32 Aligned_cols=116 Identities=11% Similarity=0.054 Sum_probs=77.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC------------------CCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCc
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD------------------TFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~------------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~ 69 (189)
.-+|.|+|..++|||||..+|+.. .+.+..+-+..-|+.+......+.++.+.++|+||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 468999999999999999999511 11111111222233333332333333478999999999
Q ss_pred cccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC 126 (189)
Q Consensus 70 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~ 126 (189)
.+|.......++.+|++++|+|+...-.-+...-| +...++ ++|.|++.||.|.
T Consensus 111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~--~lp~i~fINK~Dr 164 (548)
T 3vqt_A 111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR--ATPVMTFVNKMDR 164 (548)
T ss_dssp GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT--TCCEEEEEECTTS
T ss_pred HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh--CCceEEEEecccc
Confidence 99999999999999999999999875433333444 344444 7999999999663
No 193
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.61 E-value=6.1e-16 Score=123.60 Aligned_cols=146 Identities=15% Similarity=0.186 Sum_probs=72.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCC------CcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc------
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSS------RKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------ 74 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------ 74 (189)
-.++|+|+|++|+|||||++.|.+..+..... ..++.+...........+....+.+||++|...+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 35789999999999999999999876532211 012222121111112233345789999999865421
Q ss_pred -------------------chHHHhcCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHHhCCCCcEEEEeecccccc-----
Q psy17231 75 -------------------ITSSYYKFAEAAILVFSLDNA-ASFHVLS-QHLLEIVTYAENAKIFLCGNNEQCHN----- 128 (189)
Q Consensus 75 -------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~d~~~----- 128 (189)
+...++.++++.+++|+.... .++..+. .|+..+. .+.|+|+|+||+|+..
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHH
Confidence 012233455666666666543 4555553 5666554 3799999999998632
Q ss_pred ------------cCCceEEeeccCCCCHHHHHHHHHHHH
Q psy17231 129 ------------LISSTYKTSCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 129 ------------~~~~~~~~Sa~~~~~i~~~~~~i~~~i 155 (189)
...+++++|++++.+++++|..+...+
T Consensus 187 ~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 187 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 124789999999999999887776544
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.60 E-value=1.9e-15 Score=118.90 Aligned_cols=89 Identities=11% Similarity=0.171 Sum_probs=66.3
Q ss_pred EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------
Q psy17231 59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------- 129 (189)
Q Consensus 59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------- 129 (189)
+.+.+|||||... ........+|++++|+|....+.+..+..+ ....|+++|+||+|+.+.
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl~~~~~~~~~~~~ 241 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADGEHHKEARLAARE 241 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCGGGHHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCCcChhHHHHHHHH
Confidence 5789999999533 234556899999999998765544332211 124799999999986411
Q ss_pred ---------------CCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231 130 ---------------ISSTYKTSCKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 130 ---------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 157 (189)
..+++.+||++|.|++++++++.+.+..
T Consensus 242 l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 242 LSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 2479999999999999999999887754
No 195
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.57 E-value=3.5e-15 Score=109.52 Aligned_cols=140 Identities=16% Similarity=0.114 Sum_probs=85.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeee------------EEEEEE------------------CC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNF------------NKEYKV------------------DD 56 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~------------~~~~~~------------------~~ 56 (189)
...+|+++|.+|||||||+++|........ ....+..++. ...... ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~--~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEV--KIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTS--CEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCC--eEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 356899999999999999999986522110 0010000000 000111 11
Q ss_pred eEEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-------
Q psy17231 57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------- 129 (189)
Q Consensus 57 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------- 129 (189)
....+.+|||+|+..... .+....+.+++|+|+++... ....+.. .. +.|+++|+||+|+...
T Consensus 107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~---~~--~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPE---IF--RVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHH---HH--HTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhh---hh--hcCCEEEEecccCCcchhhHHHH
Confidence 234678999998521111 11125688999999876532 1111111 11 4889999999997421
Q ss_pred ----------CCceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231 130 ----------ISSTYKTSCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 130 ----------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
..+++++||++|.|++++++++.+.+...
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 23789999999999999999998877543
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.57 E-value=4e-15 Score=122.94 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=79.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCC--CCCCcccceeeeeEEEEE------------------------------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFIS--SSSRKSTLGLDNFNKEYK------------------------------ 53 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~------------------------------ 53 (189)
....+|+|+|.+|+|||||+|+|.+..+.. ... .++. +.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~-~p~T--~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGP-EPTT--DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCS-SCCC--CSEEEEECCSSSEEECCC------------------CC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCC-CCcc--ceEEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 356899999999999999999999887631 111 1111 11000000
Q ss_pred --------ECCe-EEEEEEEeCCCccc-----------cccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCC
Q psy17231 54 --------VDDR-SIQMQLWDTGGMER-----------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE 113 (189)
Q Consensus 54 --------~~~~-~~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 113 (189)
.... ...+.+|||||... |......++..+|++++|+|+++.........|+..+...
T Consensus 140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-- 217 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-- 217 (550)
T ss_dssp CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--
T ss_pred cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--
Confidence 0000 02579999999864 3345566788999999999998865555666666665443
Q ss_pred CCcEEEEeeccccc
Q psy17231 114 NAKIFLCGNNEQCH 127 (189)
Q Consensus 114 ~~p~ivv~nK~d~~ 127 (189)
+.|+++|+||+|+.
T Consensus 218 ~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 218 EDKIRVVLNKADMV 231 (550)
T ss_dssp GGGEEEEEECGGGS
T ss_pred CCCEEEEEECCCcc
Confidence 68999999999974
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.56 E-value=5.1e-14 Score=110.38 Aligned_cols=84 Identities=19% Similarity=0.138 Sum_probs=56.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCccccc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGMERVA 73 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~ 73 (189)
++|+++|.+|||||||+|+|.+..+.....+..|++.+. ..+.+.+. ...+.+||+||+.++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 689999999999999999999877533332233432222 22333332 1478999999987653
Q ss_pred ----cc---hHHHhcCCcEEEEEEeCCC
Q psy17231 74 ----SI---TSSYYKFAEAAILVFSLDN 94 (189)
Q Consensus 74 ----~~---~~~~~~~~~~~i~v~d~~~ 94 (189)
.+ ....++.+|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22 2345789999999999975
No 198
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.55 E-value=9.6e-17 Score=118.30 Aligned_cols=139 Identities=14% Similarity=0.101 Sum_probs=80.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeee------------EEEEEEC-Ce----------------
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNF------------NKEYKVD-DR---------------- 57 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~------------~~~~~~~-~~---------------- 57 (189)
+.++|+++|.+|||||||+++|....+.. .+.++++.++. ......+ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~--~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK--YKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT--CCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 46899999999999999999998765533 22344433332 1111111 10
Q ss_pred ---EEEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----
Q psy17231 58 ---SIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL----- 129 (189)
Q Consensus 58 ---~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~----- 129 (189)
...+.++|++|.-... ..+-...+..+.+.|........ .. +... . ..|.++|+||+|+...
T Consensus 115 ~~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~--~~-~~~~--~--~~~~iiv~NK~Dl~~~~~~~~ 184 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTI--EK-HPGI--M--KTADLIVINKIDLADAVGADI 184 (226)
T ss_dssp CGGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTT--TT-CHHH--H--TTCSEEEEECGGGHHHHTCCH
T ss_pred hcCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhH--hh-hhhH--h--hcCCEEEEeccccCchhHHHH
Confidence 1134555555521100 01111234455666643211100 00 0011 1 4788999999996431
Q ss_pred ------------CCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231 130 ------------ISSTYKTSCKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 130 ------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 157 (189)
..+++++||++|.|++++|+++.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 185 KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 2478999999999999999999887754
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.54 E-value=7.9e-14 Score=109.34 Aligned_cols=88 Identities=13% Similarity=0.203 Sum_probs=59.3
Q ss_pred EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------
Q psy17231 59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------- 129 (189)
Q Consensus 59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------- 129 (189)
+.+.++||+|.... .......+|.+++|+|+++......+.. .+ ...|.++|+||+|+...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~~~~~~~ 236 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPARRIQAE 236 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhHHHHHHH
Confidence 46799999996422 2455778999999999987543322221 11 24688999999997420
Q ss_pred ---------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 130 ---------------ISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 130 ---------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
..+++.+||++|.|++++++++.+.+.
T Consensus 237 l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 237 YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 236789999999999999999988654
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.53 E-value=5.2e-14 Score=105.85 Aligned_cols=96 Identities=15% Similarity=0.036 Sum_probs=63.1
Q ss_pred EEEEEEeCCCccccccchH------HHhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231 59 IQMQLWDTGGMERVASITS------SYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL 129 (189)
Q Consensus 59 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~ 129 (189)
+.+.+|||||+.+...... ..+.. +++++++|... +..+.....+....... .+.|+++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR-LGATTIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH-HTSCEEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc-cCCCeEEEEeccccccc
Confidence 4789999999876543221 13345 77778887643 33333222222111111 36899999999886311
Q ss_pred -------------------------------------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 130 -------------------------------------------ISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 130 -------------------------------------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
..+++++||++|.|++++++++.+.+.
T Consensus 187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 127899999999999999999988764
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.50 E-value=3e-14 Score=111.47 Aligned_cols=88 Identities=10% Similarity=0.138 Sum_probs=61.1
Q ss_pred EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc---------
Q psy17231 59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL--------- 129 (189)
Q Consensus 59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~--------- 129 (189)
+.+.+|||||..+.. ......+|++++|+|.+....+..+.. .. .+.|.++|+||+|+.+.
T Consensus 149 ~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~ 218 (341)
T 2p67_A 149 YDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GL----MEVADLIVINKDDGDNHTNVAIARHM 218 (341)
T ss_dssp CSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HH----HHHCSEEEECCCCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHH---hh----hcccCEEEEECCCCCChHHHHHHHHH
Confidence 578999999975433 235689999999999876543221111 11 14788999999886321
Q ss_pred ---------------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 130 ---------------ISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 130 ---------------~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
..+++.+||++|.|++++++++.+.+.
T Consensus 219 l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 219 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 235789999999999999999988764
No 202
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.49 E-value=1e-14 Score=122.50 Aligned_cols=116 Identities=11% Similarity=0.086 Sum_probs=79.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh--CCC------------CCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccccc
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY--DTF------------ISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVA 73 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~--~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 73 (189)
.-+|.|+|..++|||||..+|+. +.. .+..+-+..-|+++......+.++.+.++++||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 35789999999999999999952 111 1111111111334444434444455789999999999999
Q ss_pred cchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231 74 SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC 126 (189)
Q Consensus 74 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~ 126 (189)
......++.+|++++|+|+...-.-+. ...++.+... ++|.|++.||.|.
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~--~lp~i~~INKmDr 131 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM--GIPTIFFINKIDQ 131 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH--TCSCEECCEECCS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc--CCCeEEEEecccc
Confidence 999999999999999999976422222 2333344444 7999999999663
No 203
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.48 E-value=3.2e-13 Score=106.40 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=86.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc----c---hHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS----I---TSSYY 80 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~---~~~~~ 80 (189)
..+|.|+|.||||||||+|+|.+........+..|. +.....+.+.+ .+++++|+||..+-.. . .-...
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~--~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTL--VTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCC--CEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCcee--eeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 358999999999999999999987765554444444 55555666666 4789999999754321 1 22456
Q ss_pred cCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhCCCCcEEEEeecccccccCCceEEeeccCCCCHHH
Q psy17231 81 KFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYAENAKIFLCGNNEQCHNLISSTYKTSCKTGEGVEE 146 (189)
Q Consensus 81 ~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~~~~~~~~Sa~~~~~i~~ 146 (189)
+.+|++++|+|++++.. ++.+...+..........|.+++.||.|.... .+.......+.+.++
T Consensus 148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi--~i~~~~~~~~l~~ee 212 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGI--SITNTVPLTHLGNDE 212 (376)
T ss_dssp HHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCE--EEEESSCCSSCCHHH
T ss_pred HhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhh--hhhcchhhhhccHHH
Confidence 78999999999998742 22333332221111256889999999987654 333333334444443
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.48 E-value=2.7e-13 Score=106.69 Aligned_cols=84 Identities=18% Similarity=0.159 Sum_probs=55.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECC-------------------eEEEEEEEeCCCc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD-------------------RSIQMQLWDTGGM 69 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~ 69 (189)
++|+++|.+|||||||+|+|.+........+..|+..+.. .....+ ....+.+||+||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5899999999999999999987643222212223221111 112211 2357899999998
Q ss_pred cccc----cch---HHHhcCCcEEEEEEeCCC
Q psy17231 70 ERVA----SIT---SSYYKFAEAAILVFSLDN 94 (189)
Q Consensus 70 ~~~~----~~~---~~~~~~~~~~i~v~d~~~ 94 (189)
.++. .+. ...++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 7653 222 235789999999999975
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.43 E-value=1.4e-12 Score=110.84 Aligned_cols=116 Identities=11% Similarity=0.109 Sum_probs=75.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC--------C------CCCCCCCcccceeeeeE--EEEEECC-----eEEEEEEEeC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD--------T------FISSSSRKSTLGLDNFN--KEYKVDD-----RSIQMQLWDT 66 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~--------~------~~~~~~~~~t~~~~~~~--~~~~~~~-----~~~~~~i~D~ 66 (189)
.-+|.|+|..++|||||..+|+.. . +.+..+-+..-|+++.. ..+.+.+ ..+.++++||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 358999999999999999999511 1 11111111111223322 2333322 3588999999
Q ss_pred CCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccc
Q psy17231 67 GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQC 126 (189)
Q Consensus 67 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~ 126 (189)
||+.+|.......++.+|++++|+|+...-.-+...-| +...+. ++|.|++.||.|.
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~--~lp~i~~iNKiDr 149 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY--GVPRIVYVNKMDR 149 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH--TCCEEEEEECSSS
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc--CCCeEEEEccccc
Confidence 99999999999999999999999998764332223333 344444 7999999999664
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.39 E-value=1.6e-12 Score=110.21 Aligned_cols=146 Identities=15% Similarity=0.156 Sum_probs=90.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccc------------------------------------------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTL------------------------------------------ 43 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~------------------------------------------ 43 (189)
....+|+++|.+++|||||+|+|.+..+.+......|-
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 34679999999999999999999988763322111110
Q ss_pred -----eeeee--EEEEEECCeEEEEEEEeCCCcccc-------------ccchHHHh-cCCcEEEEEEeCCChhhHHHHH
Q psy17231 44 -----GLDNF--NKEYKVDDRSIQMQLWDTGGMERV-------------ASITSSYY-KFAEAAILVFSLDNAASFHVLS 102 (189)
Q Consensus 44 -----~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~ 102 (189)
++... ...+...+ ...+.++||||...- ......++ ..+|++++|+|++....-....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 00000 00111111 124789999996541 11222333 5789999999997643222222
Q ss_pred HHHHHHHHhCCCCcEEEEeeccccccc------------------CCceEEeeccCCCCHHHHHHHHHHH
Q psy17231 103 QHLLEIVTYAENAKIFLCGNNEQCHNL------------------ISSTYKTSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 103 ~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------~~~~~~~Sa~~~~~i~~~~~~i~~~ 154 (189)
.++..+.. .+.|+|+|+||.|+... ..+++.+||++|.|++++++.+.+.
T Consensus 208 ~ll~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHh--cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 23333333 37999999999886421 0145668999999999999988763
No 207
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.33 E-value=1.6e-12 Score=102.83 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCccc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGMER 71 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~ 71 (189)
..+++.++|.+|||||||+|+|.+..+.....+..|+ +.....+.+.+. ...+.+||+||...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi--~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTI--DPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCcccc--CceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 4579999999999999999999987664333333333 333333443331 23589999999876
Q ss_pred ccc-------chHHHhcCCcEEEEEEeCCChhhH
Q psy17231 72 VAS-------ITSSYYKFAEAAILVFSLDNAASF 98 (189)
Q Consensus 72 ~~~-------~~~~~~~~~~~~i~v~d~~~~~s~ 98 (189)
... .+...++.+|++++|+|+++.+++
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC------
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 443 345678899999999999865443
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.30 E-value=7.3e-12 Score=97.72 Aligned_cols=88 Identities=10% Similarity=0.175 Sum_probs=58.6
Q ss_pred EEEEEEeCCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc----------
Q psy17231 59 IQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN---------- 128 (189)
Q Consensus 59 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~---------- 128 (189)
..+.++||+|..+- .......+|.+++|+|....+..+.+... +. ..|.+++.||+|+..
T Consensus 148 ~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~----~~~~ivvlNK~Dl~~~~~~s~~~~~ 217 (337)
T 2qm8_A 148 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---IF----ELADMIAVNKADDGDGERRASAAAS 217 (337)
T ss_dssp CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---HH----HHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred CCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh----ccccEEEEEchhccCchhHHHHHHH
Confidence 57899999997532 23456789999999998654322212111 11 245677789999421
Q ss_pred ---------c------CCceEEeeccCCCCHHHHHHHHHHHHH
Q psy17231 129 ---------L------ISSTYKTSCKTGEGVEEMFADIGRQLI 156 (189)
Q Consensus 129 ---------~------~~~~~~~Sa~~~~~i~~~~~~i~~~i~ 156 (189)
. ..+++.+||+++.|++++++.+.+.+.
T Consensus 218 ~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 218 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 246789999999999999999887654
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.21 E-value=8.2e-12 Score=90.06 Aligned_cols=91 Identities=11% Similarity=0.008 Sum_probs=63.2
Q ss_pred CCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHH---HHhC---CCCcEEEEeecc-cccccC---------
Q psy17231 67 GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI---VTYA---ENAKIFLCGNNE-QCHNLI--------- 130 (189)
Q Consensus 67 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~---~~~~---~~~p~ivv~nK~-d~~~~~--------- 130 (189)
+|+..++.+|..++..+|++|+|+|.+|++.++ ....+..+ .... .+.|++|++||. |..+..
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L 188 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 188 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence 378889999999999999999999999886543 33333222 2221 478999999994 554321
Q ss_pred --------CceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231 131 --------SSTYKTSCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 131 --------~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
..+..|||++|+|+.|.++|+.+.+..+
T Consensus 189 ~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 189 HLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp TGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred CCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 2568899999999999999998777543
No 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.16 E-value=1.1e-10 Score=89.82 Aligned_cols=82 Identities=21% Similarity=0.202 Sum_probs=69.2
Q ss_pred ccccccchHHHhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCcEEEEeecccccc----------------cCC
Q psy17231 69 MERVASITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN----------------LIS 131 (189)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~----------------~~~ 131 (189)
++++..+...+++++|++++|+|++++. ++..+..|+..+... ++|+++|+||+|+.. ...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~--~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~ 143 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF--KVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY 143 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC--CCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence 5667777788899999999999999986 899899999877653 799999999999732 123
Q ss_pred ceEEeeccCCCCHHHHHHHHH
Q psy17231 132 STYKTSCKTGEGVEEMFADIG 152 (189)
Q Consensus 132 ~~~~~Sa~~~~~i~~~~~~i~ 152 (189)
+++++||++|.|++++++.+.
T Consensus 144 ~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 144 DVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp EEEECCTTTCTTHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHhhcc
Confidence 789999999999999998764
No 211
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.08 E-value=8.2e-11 Score=88.80 Aligned_cols=92 Identities=9% Similarity=0.005 Sum_probs=67.1
Q ss_pred CCCccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHH---HHH-Hh--CCCCcEEEEeec-ccccccC--------
Q psy17231 66 TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLL---EIV-TY--AENAKIFLCGNN-EQCHNLI-------- 130 (189)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~-~~--~~~~p~ivv~nK-~d~~~~~-------- 130 (189)
.+|+...+..|..++.++|++|+|+|.+|++.++ ....+. .+. .. ..+.|++|++|| +|..+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4578888999999999999999999999987543 322222 222 11 258999999997 5654332
Q ss_pred ---------CceEEeeccCCCCHHHHHHHHHHHHHHh
Q psy17231 131 ---------SSTYKTSCKTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 131 ---------~~~~~~Sa~~~~~i~~~~~~i~~~i~~~ 158 (189)
..+..|||.+|+|+.|.++|+.+.+..+
T Consensus 273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 2568899999999999999999887543
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.97 E-value=2.7e-09 Score=84.54 Aligned_cols=86 Identities=20% Similarity=0.223 Sum_probs=58.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCcccceeeeeEEEEEECCe---------------EEEEEEEeCCCcc
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDTF-ISSSSRKSTLGLDNFNKEYKVDDR---------------SIQMQLWDTGGME 70 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~ 70 (189)
+..++.++|++|+|||||+|.|.+... .....+..|+ +.....+.+.+. ...+.+||+||..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi--~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATI--DPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCC--CTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceee--cceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 357899999999999999999998765 3333222232 444444444431 1357999999965
Q ss_pred cc-------ccchHHHhcCCcEEEEEEeCCC
Q psy17231 71 RV-------ASITSSYYKFAEAAILVFSLDN 94 (189)
Q Consensus 71 ~~-------~~~~~~~~~~~~~~i~v~d~~~ 94 (189)
.. .......++.+|++++|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 32 2234456788999999999863
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.76 E-value=1.5e-08 Score=79.82 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=65.8
Q ss_pred CccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------
Q psy17231 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ 129 (189)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------ 129 (189)
..++|..+...+.+.++++++|+|++++. ..|...+.+...++|+++|+||+|+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence 34678888889999999999999999864 4566666666568999999999997432
Q ss_pred CC---ceEEeeccCCCCHHHHHHHHHHH
Q psy17231 130 IS---STYKTSCKTGEGVEEMFADIGRQ 154 (189)
Q Consensus 130 ~~---~~~~~Sa~~~~~i~~~~~~i~~~ 154 (189)
.. +++.+||++|.|++++++.+.+.
T Consensus 130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 130 GLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp TCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 11 67999999999999999998654
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.75 E-value=1.9e-09 Score=88.01 Aligned_cols=142 Identities=10% Similarity=0.114 Sum_probs=79.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH------hCCCC--CCCCCcccc-----------eeeeeEEEEE-------------E
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYA------YDTFI--SSSSRKSTL-----------GLDNFNKEYK-------------V 54 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~------~~~~~--~~~~~~~t~-----------~~~~~~~~~~-------------~ 54 (189)
+...|+++|.+||||||++++|. +.+.. ..+.+.+.. ++........ .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999997 33210 000001100 0111110000 0
Q ss_pred CCeEEEEEEEeCCCcccccc-chHH---H--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcE-EEEeeccccc
Q psy17231 55 DDRSIQMQLWDTGGMERVAS-ITSS---Y--YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNNEQCH 127 (189)
Q Consensus 55 ~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~d~~ 127 (189)
....+.+.|+||||...... +... . ...+|.+++|+|+......... ...+.. ..|+ .+|.||.|..
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~---~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD---KVDVASVIVTKLDGH 253 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH---HHCCCCEEEECTTSC
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh---hcCceEEEEeCCccc
Confidence 00235789999999753221 1111 1 2378999999998764321111 122222 2675 8899997753
Q ss_pred ccC-----------------------------CceEEeeccCCCC-HHHHHHHHHHH
Q psy17231 128 NLI-----------------------------SSTYKTSCKTGEG-VEEMFADIGRQ 154 (189)
Q Consensus 128 ~~~-----------------------------~~~~~~Sa~~~~~-i~~~~~~i~~~ 154 (189)
... .+.+.+|+..|.| ++++++++.+.
T Consensus 254 ~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 254 AKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 211 1224479999999 99999988765
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.73 E-value=2.7e-08 Score=75.15 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
.++++++|++|+|||||++.|.+..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999997643
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.71 E-value=8.4e-08 Score=76.62 Aligned_cols=62 Identities=19% Similarity=0.381 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEE--CCeEEEEEEEeCCCcc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV--DDRSIQMQLWDTGGME 70 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~i~D~~g~~ 70 (189)
++++|+|++|+|||||++.|.+..+..........+.......+.. .+....+.++|++|..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 5699999999999999999987754221111101111111111212 2223367899998864
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.59 E-value=2.9e-09 Score=83.98 Aligned_cols=116 Identities=15% Similarity=0.104 Sum_probs=62.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc----ch----
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFIS---SSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS----IT---- 76 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~---- 76 (189)
..+++++|.+|+|||||+|+|.+..... ........+.+.....+...+. +.++||||...... +.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 4589999999999999999998753211 0000111222333333444332 68999999754321 11
Q ss_pred HHH--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc
Q psy17231 77 SSY--YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL 129 (189)
Q Consensus 77 ~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~ 129 (189)
..+ ....+.++++++.....-+..+.. +..+. ..+.|+++++||.|....
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~--~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS--GGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEE
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE-EEEec--CCCceEEEEecCcccccc
Confidence 111 245677888887632110001100 00001 136899999999987543
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.59 E-value=4.3e-09 Score=83.02 Aligned_cols=111 Identities=18% Similarity=0.117 Sum_probs=63.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC------CCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccccc-------
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD------TFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVAS------- 74 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------- 74 (189)
..+++++|.+|+|||||+|+|.+. ....... .+.+.....+.... .+.++||||......
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~----~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~ 234 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYF----PGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDA 234 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEEC----TTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCC----CCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhH
Confidence 457999999999999999999875 2211111 12222233344433 268999999753321
Q ss_pred -chHHHh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc
Q psy17231 75 -ITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN 128 (189)
Q Consensus 75 -~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~ 128 (189)
....++ ...+.++++.+....--+..+.. +..+. ..+.|+++++||.|...
T Consensus 235 ~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~--~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 235 RDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK--GGRRSFVCYMANELTVH 288 (369)
T ss_dssp TTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEE
T ss_pred HHHHHHhcccccCceEEEEcCCceEEECCEEE-EEEcc--CCCceEEEEecCCcccc
Confidence 112222 56788888888632210001100 00001 14689999999998754
No 219
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.59 E-value=2.6e-08 Score=74.97 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV 72 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 72 (189)
++++++|.+|+|||||+|+|.+...... .++.|.+.....+..+. .+.+|||||....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~---~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV---GAQPGITKGIQWFSLEN---GVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-------------CCSCEEECTT---SCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc---CCCCCCccceEEEEeCC---CEEEEECCCcccC
Confidence 5999999999999999999997765322 22223233222233322 5789999997643
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.59 E-value=1.3e-06 Score=69.64 Aligned_cols=143 Identities=13% Similarity=0.136 Sum_probs=76.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-cccceeeeeEEEEEECCeEEEEEEEeCCCccccccchHHH-----hc
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSR-KSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSY-----YK 81 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~ 81 (189)
...+.++|++|+|||||+|.+.+...+..... .............. ....-.+.+||++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 34789999999999999999987432221100 00000000011111 1111146899999864221111111 22
Q ss_pred CCcEEEEEEeCC--ChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc------------------------------cc
Q psy17231 82 FAEAAILVFSLD--NAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH------------------------------NL 129 (189)
Q Consensus 82 ~~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~------------------------------~~ 129 (189)
..+..++ ++.. .++.. . ....+... ++|+++|.||.|.. ..
T Consensus 148 ~~~~~~~-lS~G~~~kqrv-~---la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKNDI-D---IAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GCSEEEE-EESSCCCHHHH-H---HHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEE-eCCCCccHHHH-H---HHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 3354444 6654 22211 1 22222332 68999999993311 11
Q ss_pred ---CCceEEeec--cCCCCHHHHHHHHHHHHHHh
Q psy17231 130 ---ISSTYKTSC--KTGEGVEEMFADIGRQLILS 158 (189)
Q Consensus 130 ---~~~~~~~Sa--~~~~~i~~~~~~i~~~i~~~ 158 (189)
....+.+|+ ..+.|++++.+.+.+.+.+.
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 125688899 66678999999988766443
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.58 E-value=6.4e-08 Score=73.56 Aligned_cols=60 Identities=25% Similarity=0.353 Sum_probs=36.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER 71 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 71 (189)
...++++++|.+|||||||+|+|.+........ ..+.+.....+..+. .+.+|||||...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~---~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD---RPGITTSQQWVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC---------------CCEEETT---TEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCC---CCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence 456899999999999999999999766422221 112122222233332 578999999753
No 222
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.54 E-value=8.5e-08 Score=75.58 Aligned_cols=83 Identities=13% Similarity=0.150 Sum_probs=65.0
Q ss_pred CccccccchHHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccccc------------------
Q psy17231 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL------------------ 129 (189)
Q Consensus 68 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------------ 129 (189)
.+++|..+...++..++++++|+|++++.+ .|...+.+...+.|+++|+||+|+...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~ 131 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEEL 131 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHc
Confidence 467788888888899999999999999874 355555555568999999999997432
Q ss_pred C---CceEEeeccCCCCHHHHHHHHHHHH
Q psy17231 130 I---SSTYKTSCKTGEGVEEMFADIGRQL 155 (189)
Q Consensus 130 ~---~~~~~~Sa~~~~~i~~~~~~i~~~i 155 (189)
. .+++.+||++|.|++++++.+.+..
T Consensus 132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 132 GLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 1 1578999999999999999886543
No 223
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.25 E-value=1.6e-06 Score=72.01 Aligned_cols=66 Identities=24% Similarity=0.201 Sum_probs=39.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhCCCCCCC---CCcccceeeeeEEEEEECCeEEEEEEEeCCCccc
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSS---SRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMER 71 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 71 (189)
..+..+|+|+|.+|+|||||+|+|.+....... ....|.+......... ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~-~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccc-cCCCceEEEecCCCcCc
Confidence 455688999999999999999999987632111 1111222111110010 11234689999999754
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.24 E-value=1.9e-06 Score=65.44 Aligned_cols=87 Identities=10% Similarity=0.046 Sum_probs=62.0
Q ss_pred EeCCCcc-ccccchHHHhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhCCCCcEEEEeecccccc------------
Q psy17231 64 WDTGGME-RVASITSSYYKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNNEQCHN------------ 128 (189)
Q Consensus 64 ~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ivv~nK~d~~~------------ 128 (189)
-..||+. .........+..+|+++.|+|+.++.+.. .+..|+ .++|.++|+||+|+..
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~~~~~~~~~~ 76 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAAVTQQWKEHFE 76 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHHHHHHHHHHHH
Confidence 3467764 23334566788999999999999987654 344433 4799999999998642
Q ss_pred -cCCceEEeeccCCCCHHHHHHHHHHHHHH
Q psy17231 129 -LISSTYKTSCKTGEGVEEMFADIGRQLIL 157 (189)
Q Consensus 129 -~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~ 157 (189)
...+++.+||+++.|++++++.+.+.+..
T Consensus 77 ~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 77 NQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp TTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred hcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 12378899999999999999988776654
No 225
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.20 E-value=1e-07 Score=77.45 Aligned_cols=110 Identities=9% Similarity=0.015 Sum_probs=63.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCcccceeeeeEEEEEECCeEEEEEEEeCCCcccc--ccch-------
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGMERV--ASIT------- 76 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~------- 76 (189)
..+.+|+++|.+|+||||+.++|........ .++..++.........+......+||..|.+.+ ...+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~---~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~ 113 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG---VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALND 113 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccC---CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999975422110 222211111110011111123467898886322 2222
Q ss_pred -HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEe
Q psy17231 77 -SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCG 121 (189)
Q Consensus 77 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~ 121 (189)
..++....+.++|+|.++. +.+....|+..+... ..+++.+-
T Consensus 114 ~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~--~~~vv~l~ 156 (469)
T 1bif_A 114 VRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN--GYKTFFVE 156 (469)
T ss_dssp HHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH--TCEEEEEE
T ss_pred HHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc--CCcEEEEE
Confidence 4455567888999999988 456667777666655 34554444
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.11 E-value=1.3e-05 Score=64.37 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=61.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh------CCC--CCCCCCccc-----------ceeeeeEEEEEEC------------
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY------DTF--ISSSSRKST-----------LGLDNFNKEYKVD------------ 55 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~------~~~--~~~~~~~~t-----------~~~~~~~~~~~~~------------ 55 (189)
++..|+++|++|+||||++.+|.. .+. ...+.+.+. .+..........+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999963 111 001111110 0111110000000
Q ss_pred -CeEEEEEEEeCCCcccccc-----ch-HHHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeeccccc
Q psy17231 56 -DRSIQMQLWDTGGMERVAS-----IT-SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCH 127 (189)
Q Consensus 56 -~~~~~~~i~D~~g~~~~~~-----~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~ 127 (189)
...+.+.++||+|...... +. ......++.+++|.|+.....-... ...+... -.+..+|.||.|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~--~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA--TPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS--CTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh--CCCeEEEEECCCCc
Confidence 0125789999999543221 11 1123357889999998754322121 2222222 35667999997743
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.02 E-value=2.4e-06 Score=68.58 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+..|+++|++||||||+++.|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999964
No 228
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.76 E-value=2.4e-05 Score=54.68 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=24.1
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
|...+++...|+++|++|+||||+++.|..
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 555566677899999999999999999864
No 229
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.70 E-value=2.3e-05 Score=55.31 Aligned_cols=23 Identities=39% Similarity=0.687 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
++++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999754
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.67 E-value=7.4e-05 Score=62.56 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
..++|+|++|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999998764
No 231
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.63 E-value=4.1e-05 Score=55.04 Aligned_cols=30 Identities=20% Similarity=0.125 Sum_probs=24.9
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
|.+..++...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp TTCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 455455567899999999999999999964
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.62 E-value=0.00019 Score=54.76 Aligned_cols=64 Identities=9% Similarity=-0.002 Sum_probs=37.9
Q ss_pred EEEEEEEeCCCccc--ccc-chH-----HHhcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCc-EEEEeeccccc
Q psy17231 58 SIQMQLWDTGGMER--VAS-ITS-----SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNNEQCH 127 (189)
Q Consensus 58 ~~~~~i~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~d~~ 127 (189)
.+.+.++||||... ... +.. .....++.+++|.|...... .......+.. ..| ..+|.||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~---~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ---ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH---TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh---hCCCCEEEEeCCCCC
Confidence 35689999999765 211 111 13447899999999864321 1112222222 355 67899998854
No 233
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.59 E-value=0.00018 Score=57.91 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+-.-|.|+|++++|||||+|+|.+.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3455669999999999999999853
No 234
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.58 E-value=5.2e-05 Score=53.42 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.-.++|+|++|||||||++.|...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346889999999999999999763
No 235
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.57 E-value=5.3e-05 Score=54.00 Aligned_cols=31 Identities=19% Similarity=0.110 Sum_probs=24.0
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
|-+++.++..|+|.|++||||||+.+.|...
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 5667788899999999999999999999864
No 236
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.54 E-value=6e-05 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
...++++|++|||||||++.+.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 457889999999999999999865
No 237
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.52 E-value=5.8e-05 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~ 29 (189)
.+...|+|+|++|||||||++.+.
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999998
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.52 E-value=5e-05 Score=54.40 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.-.++|+|++|+|||||++.+.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999975
No 239
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.49 E-value=8.2e-05 Score=53.65 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+..-|+|+||+|||||||++.|...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4456889999999999999999865
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.48 E-value=7.5e-05 Score=53.35 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
..-++|+|++|||||||++.+.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346889999999999999999764
No 241
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.44 E-value=7.4e-05 Score=52.86 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-++|+|++|+|||||++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3689999999999999999753
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.43 E-value=0.00011 Score=52.71 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+.-.|+|+||+|+|||||+++|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4457889999999999999999753
No 243
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.42 E-value=9.4e-05 Score=52.11 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
...|+|.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999964
No 244
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.41 E-value=8.7e-05 Score=52.74 Aligned_cols=21 Identities=29% Similarity=0.683 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy17231 11 VILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~ 31 (189)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999743
No 245
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.41 E-value=0.00039 Score=53.14 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
..++++|++|+|||||+|.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 467899999999999999998 54
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.40 E-value=0.00011 Score=53.02 Aligned_cols=26 Identities=38% Similarity=0.353 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+...+.|+|++|+|||||++.+.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999643
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.40 E-value=9e-05 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
--++|+||+|||||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999764
No 248
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.40 E-value=0.0001 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.40 E-value=9.2e-05 Score=53.29 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
--++|+|++|||||||++.+.+-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35789999999999999999764
No 250
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.39 E-value=0.00013 Score=50.94 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
...|++.|++||||||+.+.|...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999753
No 251
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.39 E-value=0.0001 Score=51.00 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q psy17231 9 QKVILCGEYGVGKSSLFRRY 28 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l 28 (189)
+.|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 252
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.38 E-value=0.00012 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++..|++.|++||||||+.+.|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
No 253
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.38 E-value=0.00014 Score=52.11 Aligned_cols=25 Identities=24% Similarity=0.082 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
|+...|+|.|++||||||+++.|..
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999975
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.37 E-value=0.0001 Score=53.60 Aligned_cols=23 Identities=30% Similarity=0.772 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.++|+|++|+|||||++.+.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46889999999999999999864
No 255
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.37 E-value=0.00013 Score=56.68 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=20.9
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
|++|.|+ ..|+|+|++|||||||..+|..
T Consensus 1 ~~~m~m~-~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 1 MTEMTKP-FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp -----CC-EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCC-ceEEEECCCcCcHHHHHHHHHH
Confidence 7777665 4688999999999999999964
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.36 E-value=0.00013 Score=52.07 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
+...++|+|++||||||+++.|....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578999999999999999997653
No 257
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.36 E-value=0.00015 Score=52.75 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=20.6
Q ss_pred CCCCCceEE-EEEcCCCCCHHHHHHHHH
Q psy17231 3 SIKVPEQKV-ILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 3 ~~~~~~~~i-~i~G~~g~GKTtli~~l~ 29 (189)
..+.++.|| +|+|+|||||+|...+|.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHH
Confidence 344555555 478999999999999985
No 258
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.36 E-value=0.00014 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
...|.|+|++||||||+.+.|..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999964
No 259
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.36 E-value=0.00012 Score=53.45 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
...|+|.|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999963
No 260
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.35 E-value=0.00014 Score=50.66 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 261
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.34 E-value=0.00013 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
...|+|+|++||||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 262
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.33 E-value=0.00013 Score=50.97 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy17231 10 KVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~ 30 (189)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999964
No 263
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.33 E-value=0.00012 Score=50.77 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
..|+|+|++||||||+.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 264
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.32 E-value=0.00019 Score=50.58 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
++..+|+++|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999754
No 265
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.31 E-value=0.00014 Score=52.23 Aligned_cols=24 Identities=29% Similarity=0.688 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
...|+|+|++|||||||+++|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999753
No 266
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.31 E-value=0.00014 Score=52.49 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+.|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999963
No 267
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.31 E-value=6.3e-05 Score=57.65 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.++++|++|||||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999997643
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.31 E-value=0.00015 Score=50.13 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999643
No 269
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.30 E-value=0.00016 Score=51.91 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.+...|.|+|++|||||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999975
No 270
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.29 E-value=0.00015 Score=52.24 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999953
No 271
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.29 E-value=0.00012 Score=54.76 Aligned_cols=78 Identities=6% Similarity=-0.106 Sum_probs=53.7
Q ss_pred CCCcccc-ccchHHHhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhCCCCcEEEEeeccccccc-------------
Q psy17231 66 TGGMERV-ASITSSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNNEQCHNL------------- 129 (189)
Q Consensus 66 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~ivv~nK~d~~~~------------- 129 (189)
.||+... .......+..+|+++.|+|+.++.+... +. ++ ++|.++|+||+|+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL~~~~~~~~~~~~~~~~ 74 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDIADEKTTKKWVEFFKKQ 74 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGGSCHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccCCCHHHHHHHHHHHHHc
Confidence 3665432 2244667789999999999998865532 22 21 6999999999996421
Q ss_pred CCceEEeeccCCCCHHHHHHHHHH
Q psy17231 130 ISSTYKTSCKTGEGVEEMFADIGR 153 (189)
Q Consensus 130 ~~~~~~~Sa~~~~~i~~~~~~i~~ 153 (189)
..++ .+||+++.|++++++.+..
T Consensus 75 g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 75 GKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TCCE-EECCTTSCHHHHHHHHCCC
T ss_pred CCeE-EEECCCCcCHHHHHHHHHH
Confidence 2356 9999999999999887644
No 272
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.29 E-value=0.00016 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++|+|+|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.28 E-value=0.00012 Score=51.03 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=17.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q psy17231 9 QKVILCGEYGVGKSSLFRRY 28 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l 28 (189)
--++++|++|||||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999964
No 274
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.27 E-value=0.00019 Score=50.39 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+...|+++|++||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999963
No 275
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.27 E-value=0.00019 Score=52.05 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+.+.|+++|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
No 276
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.26 E-value=0.00022 Score=52.65 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.++++|+|.|++||||||+.++|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999964
No 277
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.26 E-value=0.00017 Score=50.95 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy17231 10 KVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~ 30 (189)
.++++|++|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 278
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.25 E-value=0.00021 Score=50.39 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++..|++.|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999964
No 279
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.25 E-value=0.00021 Score=51.07 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
...|+|+|++|||||||++.|..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999964
No 280
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.24 E-value=0.00025 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..++.|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999964
No 281
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.23 E-value=0.00016 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|++|||||||++.+.+-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 367899999999999999998543
No 282
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.23 E-value=0.0002 Score=49.50 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999998755
No 283
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.23 E-value=0.00023 Score=50.85 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999999963
No 284
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.22 E-value=0.00023 Score=49.80 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
....|++.|++|+||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345799999999999999999963
No 285
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.22 E-value=0.00022 Score=50.77 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+.|+|.|++||||||+++.|..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 3689999999999999999975
No 286
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.20 E-value=0.00023 Score=50.08 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..|+|.|++||||||+++.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
No 287
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.20 E-value=0.0002 Score=50.95 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
++.++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5889999999999999999753
No 288
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.20 E-value=0.00028 Score=52.44 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~ 29 (189)
++...|.|+|++||||||+++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999997
No 289
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.18 E-value=7.4e-05 Score=52.95 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+...|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999963
No 290
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.18 E-value=0.00024 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+...|+|+|++|+||||+.+.|...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999998643
No 291
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.18 E-value=0.0002 Score=50.14 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999753
No 292
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.17 E-value=0.0002 Score=52.37 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+.|+|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999854
No 293
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.15 E-value=0.00026 Score=50.53 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 294
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.15 E-value=0.00026 Score=51.11 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 295
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.15 E-value=0.00042 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
...|++.|++||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999964
No 296
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.14 E-value=0.00028 Score=52.16 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.+.++|+.|+|||||++.+.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35779999999999999999854
No 297
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.13 E-value=0.00026 Score=55.34 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTF 33 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~ 33 (189)
-.++++|++|+|||||+|.|.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3688999999999999999996543
No 298
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.13 E-value=0.00035 Score=49.72 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+...|+|.|++||||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
No 299
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.13 E-value=0.00026 Score=52.16 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.+.|+|++|+|||||++.+.+-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999999754
No 300
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.12 E-value=0.00029 Score=51.14 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
....|+|+|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999964
No 301
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.11 E-value=0.00028 Score=52.79 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.-.++|+|++|||||||++.+.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 34688999999999999999975
No 302
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.11 E-value=0.00026 Score=53.02 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|+.|+|||||++.+.+-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998643
No 303
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.11 E-value=0.00026 Score=53.42 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|++|+|||||++.+.+-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998643
No 304
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.10 E-value=0.00036 Score=53.47 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=53.0
Q ss_pred chHHHhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhCCCCcEEEEeeccccccc-----------------CCceEEe
Q psy17231 75 ITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNNEQCHNL-----------------ISSTYKT 136 (189)
Q Consensus 75 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~~-----------------~~~~~~~ 136 (189)
+.......+|.+++|+|+.++. +...+.+++...... ++|.++|.||+|+... .-+++.+
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~ 156 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLT 156 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEE
Confidence 4445678899999999998764 334455555444333 7999999999997421 2267889
Q ss_pred eccCCCCHHHHHHH
Q psy17231 137 SCKTGEGVEEMFAD 150 (189)
Q Consensus 137 Sa~~~~~i~~~~~~ 150 (189)
||.++.|++++++.
T Consensus 157 sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 157 SSKDQDSLADIIPH 170 (307)
T ss_dssp CHHHHTTCTTTGGG
T ss_pred ecCCCCCHHHHHhh
Confidence 99999988876543
No 305
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.10 E-value=0.00028 Score=51.26 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+.|+|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 306
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.10 E-value=0.00034 Score=51.48 Aligned_cols=25 Identities=36% Similarity=0.315 Sum_probs=21.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+.++.|+|.|++||||||+.+.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999963
No 307
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.09 E-value=0.00035 Score=50.12 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+...|+|.|++||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999974
No 308
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.09 E-value=0.0003 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.363 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.+.|+|++|+|||||++.+.+-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999754
No 309
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.09 E-value=0.00029 Score=50.99 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+.++|+++|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999964
No 310
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.09 E-value=0.00031 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.-.++|+|++|+|||||++.|.+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 45789999999999999999974
No 311
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.09 E-value=0.00033 Score=49.20 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
..++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45789999999999999999854
No 312
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.09 E-value=0.00053 Score=48.24 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++...|+++|.+|+||||+++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999999964
No 313
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.09 E-value=0.00037 Score=48.09 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999975
No 314
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.09 E-value=0.00052 Score=48.93 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
....|+|.|++||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999963
No 315
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.08 E-value=0.00038 Score=52.77 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..+..|++.|++||||||+.++|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999964
No 316
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.08 E-value=0.00031 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|++|+|||||++.+.+-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999997653
No 317
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.07 E-value=0.00033 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
.+.|+|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998653
No 318
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.07 E-value=0.00042 Score=50.69 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
...++|+++|++||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999964
No 319
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.07 E-value=0.00029 Score=52.55 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|+.|+|||||++.+.+-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999997543
No 320
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.05 E-value=0.00045 Score=53.08 Aligned_cols=26 Identities=23% Similarity=0.103 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+...+.|+|++|||||||++.+.+-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 44678889999999999999999753
No 321
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.05 E-value=0.00045 Score=49.48 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+...|.|+|++|+||||+++.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467889999999999999999754
No 322
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.05 E-value=0.00033 Score=52.56 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|++|+|||||++.+.+-.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 357899999999999999998643
No 323
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.04 E-value=0.00036 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.+.|+|+.|+|||||++.+.+-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 36789999999999999999754
No 324
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.04 E-value=0.00043 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+.|.|+|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999975
No 325
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.04 E-value=0.00036 Score=51.25 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy17231 9 QKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~ 29 (189)
--++|+|++|+|||||++.+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 467899999999999999887
No 326
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.03 E-value=0.00037 Score=51.77 Aligned_cols=23 Identities=43% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998653
No 327
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.03 E-value=0.00036 Score=52.16 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.+.|+|++|+|||||++.+.+-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999999864
No 328
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.03 E-value=0.00037 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+.|+|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 329
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.03 E-value=0.00028 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.226 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+.++|+.|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999865
No 330
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.02 E-value=0.00025 Score=49.59 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=16.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999964
No 331
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.02 E-value=0.00035 Score=52.15 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|+.|+|||||++.+.+-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999998653
No 332
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.02 E-value=0.00042 Score=51.50 Aligned_cols=22 Identities=41% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+.|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 333
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.02 E-value=0.00038 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.++|+|+.|+|||||++.+.+-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36789999999999999999754
No 334
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.02 E-value=0.00042 Score=51.99 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.+.|+|+.|+|||||++.+.+-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999875
No 335
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.02 E-value=0.00037 Score=50.48 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
--+.|+|++|+|||||++.+...
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999863
No 336
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.01 E-value=0.00043 Score=50.38 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+.|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
No 337
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.01 E-value=0.00022 Score=52.12 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=15.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHH-hC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYA-YD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~-~~ 31 (189)
.-++|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 467899999999999999998 54
No 338
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.01 E-value=0.00039 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.++|+|++|+|||||++.+.+-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 367899999999999999997643
No 339
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.01 E-value=0.0006 Score=52.56 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..++-|.|+|++|||||||++.|..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567789999999999999999864
No 340
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.99 E-value=0.00043 Score=52.81 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDTF 33 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~~ 33 (189)
..++++|++|+|||||+|.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3578999999999999999986543
No 341
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.99 E-value=0.00056 Score=50.47 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+...|.|+|+.|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999975
No 342
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.99 E-value=0.00041 Score=52.24 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999863
No 343
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.99 E-value=0.0005 Score=47.92 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.-.+++.|++|+|||+|++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999753
No 344
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.98 E-value=0.00069 Score=51.45 Aligned_cols=24 Identities=21% Similarity=0.103 Sum_probs=21.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~ 29 (189)
.++..|.|+|++|||||||++.|.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999885
No 345
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.96 E-value=0.00046 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
.+.++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 346
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.95 E-value=0.00047 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.+.|+|+.|+|||||++.+.+-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36789999999999999999754
No 347
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.95 E-value=0.00049 Score=51.57 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
.+.|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998654
No 348
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.94 E-value=0.00062 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~ 29 (189)
+.-.++++|++||||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 34578899999999999999996
No 349
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.94 E-value=0.00068 Score=47.37 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.+...|+++|++||||||+.+.|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999975
No 350
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.94 E-value=0.0005 Score=50.87 Aligned_cols=22 Identities=45% Similarity=0.591 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999854
No 351
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.94 E-value=0.00056 Score=48.40 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999964
No 352
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.93 E-value=0.00045 Score=54.03 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|++|||||||++.+.+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357899999999999999998654
No 353
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.93 E-value=0.00024 Score=49.78 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+.|+|++|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999754
No 354
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.93 E-value=0.00058 Score=50.05 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=20.6
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 1 m~~~~~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
|+-...-++++.++|++||||||+.++|..
T Consensus 1 ~~~~~~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 1 MAHHHHHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --------CEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcccccccceeeECCCCCCHHHHHHHHHH
Confidence 555566789999999999999999999964
No 355
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.93 E-value=0.00059 Score=48.05 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy17231 10 KVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~ 30 (189)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 356
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.92 E-value=0.0007 Score=48.39 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+...|.|+|++|+|||||++.|..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999864
No 357
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.92 E-value=0.00043 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999764
No 358
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.92 E-value=0.00067 Score=47.36 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..+.++|++|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999974
No 359
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.91 E-value=0.0056 Score=47.82 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=49.6
Q ss_pred hcCCcEEEEEEeCCChhhHHHHHHHHHHHHHhCCCCcEEEEeecccccc----------------cCCceEEeeccCCCC
Q psy17231 80 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNNEQCHN----------------LISSTYKTSCKTGEG 143 (189)
Q Consensus 80 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~d~~~----------------~~~~~~~~Sa~~~~~ 143 (189)
...+|.+++|....-..+...+..++...... ++|.++|+||+|+.. ..-+++.+||.++.|
T Consensus 128 ~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~g 205 (358)
T 2rcn_A 128 AANIDQIVIVSAILPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDG 205 (358)
T ss_dssp EECCCEEEEEEESTTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBT
T ss_pred HhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcC
Confidence 56789888886654223444556666555444 788899999999632 123789999999999
Q ss_pred HHHHHHHH
Q psy17231 144 VEEMFADI 151 (189)
Q Consensus 144 i~~~~~~i 151 (189)
++++...+
T Consensus 206 l~~L~~~~ 213 (358)
T 2rcn_A 206 LKPLEEAL 213 (358)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99876643
No 360
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.91 E-value=0.0004 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..+..|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999864
No 361
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.91 E-value=0.00056 Score=50.86 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy17231 10 KVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~ 30 (189)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999999963
No 362
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.90 E-value=0.00063 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.|++.|++||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 363
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.90 E-value=0.00078 Score=48.61 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++.|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999975
No 364
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.90 E-value=0.0007 Score=50.48 Aligned_cols=23 Identities=39% Similarity=0.457 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999999974
No 365
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.88 E-value=0.00056 Score=53.42 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
.+.++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998654
No 366
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.87 E-value=0.00084 Score=51.91 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+...++++|++|+||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999964
No 367
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.86 E-value=0.0006 Score=53.38 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 357899999999999999998653
No 368
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.86 E-value=0.00061 Score=53.39 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357899999999999999998653
No 369
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.86 E-value=0.0006 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
-.++|+|++|||||||++.+.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999964
No 370
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.86 E-value=0.00039 Score=47.47 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.-.++++|++|+|||||++.+.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999754
No 371
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.85 E-value=0.00062 Score=53.64 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 357899999999999999998654
No 372
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.85 E-value=0.00062 Score=47.74 Aligned_cols=22 Identities=45% Similarity=0.566 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999964
No 373
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.83 E-value=0.00087 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+..+++.|++|+|||+|++.+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446999999999999999999753
No 374
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.83 E-value=0.00066 Score=53.36 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.++|++|||||||++.+.+-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 357899999999999999997643
No 375
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.82 E-value=0.00093 Score=51.12 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.+...|.|+|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456788999999999999999975
No 376
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.82 E-value=0.00065 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.+.|+|+.|+|||||++.+.+-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 36789999999999999999754
No 377
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.82 E-value=0.00067 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
.+.++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 57899999999999999998654
No 378
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.82 E-value=0.00074 Score=46.70 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
No 379
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.82 E-value=0.001 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999964
No 380
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.80 E-value=0.00097 Score=50.96 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.-.++++|++||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45788999999999999999963
No 381
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.80 E-value=0.00059 Score=47.44 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
...+++.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999653
No 382
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.80 E-value=0.00075 Score=50.70 Aligned_cols=22 Identities=45% Similarity=0.591 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999854
No 383
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.79 E-value=0.00043 Score=52.99 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.-.+.|+|++|+|||||++.+.+-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 347899999999999999988753
No 384
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.79 E-value=0.00031 Score=50.44 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy17231 10 KVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~ 30 (189)
.|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999964
No 385
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.79 E-value=0.00074 Score=52.22 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999854
No 386
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.78 E-value=0.00076 Score=52.86 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|++|+|||||++.+.+-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 357899999999999999998654
No 387
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.77 E-value=0.00091 Score=48.53 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..-.+++.|++|+|||+|++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999974
No 388
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.76 E-value=0.0012 Score=48.39 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+...|++.|++||||||++++|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999753
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.75 E-value=0.00086 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.-.++|+|++|+|||||++.+.+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 44689999999999999999975
No 390
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.74 E-value=0.001 Score=52.13 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHH
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRY 28 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l 28 (189)
.+..||+++|.+|||||||++++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45789999999999999999998
No 391
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.73 E-value=0.00078 Score=52.75 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.++|+|++|+|||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999854
No 392
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.72 E-value=0.0013 Score=47.31 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+...|+++|++|+||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999864
No 393
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.72 E-value=0.00096 Score=48.24 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
--++++|++|+|||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999999973
No 394
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.72 E-value=0.0008 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.++|+|++|+|||||++.+.+--
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998643
No 395
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.71 E-value=0.0012 Score=48.87 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+++.|.|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999965
No 396
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.71 E-value=0.0014 Score=49.53 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
...+.|+|.|++||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999963
No 397
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.71 E-value=0.00086 Score=53.07 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.+.|+|++|||||||++.+.+-
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 36889999999999999999753
No 398
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.70 E-value=0.00056 Score=53.30 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.++|++|||||||++.+.+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 357899999999999999998653
No 399
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.70 E-value=0.00071 Score=50.43 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=22.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
..+...|+|.|..||||||+++.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999998743
No 400
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.69 E-value=0.0012 Score=47.04 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
..+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998753
No 401
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.68 E-value=0.0014 Score=50.23 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.-|+|+||+|||||||...|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 45789999999999999999743
No 402
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.68 E-value=0.00099 Score=48.66 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+..-|+|.|+.|+|||||++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3567899999999999999999764
No 403
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.65 E-value=0.0014 Score=45.24 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999964
No 404
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.64 E-value=0.0013 Score=49.30 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+...+++.|++|+|||+|++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4457999999999999999999754
No 405
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.64 E-value=0.0013 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.032 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+.-+++.|+||+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456777899999999999999753
No 406
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.64 E-value=0.0013 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..|+++|++||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999975
No 407
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.64 E-value=0.0013 Score=49.65 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+...+++.|++|+|||+|++.+...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999853
No 408
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.63 E-value=0.0015 Score=51.15 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+.-.++++|++||||||+++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345788999999999999999963
No 409
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.63 E-value=0.0011 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.++|+|++|+|||||++.+.+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 35889999999999999999754
No 410
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.63 E-value=0.0015 Score=48.23 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.+..+++.|++|+|||+|++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999975
No 411
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.62 E-value=0.0016 Score=49.36 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.+...+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999987753
No 412
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.62 E-value=0.0012 Score=46.12 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy17231 10 KVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~ 30 (189)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999964
No 413
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.61 E-value=0.0015 Score=44.17 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
....|++.|++|+|||++.+.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34579999999999999999998653
No 414
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.59 E-value=0.0012 Score=49.01 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
...|+|+|++|+||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999964
No 415
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.58 E-value=0.00057 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.++|++|||||||++.+.+-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999998654
No 416
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.57 E-value=0.0018 Score=46.07 Aligned_cols=21 Identities=43% Similarity=0.417 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy17231 10 KVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~ 30 (189)
.|.|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999964
No 417
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.56 E-value=0.0014 Score=47.20 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+++.|+|.|++||||||+.+.|..
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 418
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.56 E-value=0.0023 Score=48.53 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
...+++.|++|+|||++++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 457999999999999999999754
No 419
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.56 E-value=0.0021 Score=47.97 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+...+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45678999999999999999999854
No 420
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.56 E-value=0.0017 Score=52.75 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+...++|+|++|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345788999999999999999953
No 421
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.55 E-value=0.0012 Score=54.04 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
..++|+|++|||||||++.+.+--
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999997543
No 422
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.55 E-value=0.0015 Score=46.91 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.--++++|++|+|||||+..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999986
No 423
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.54 E-value=0.0017 Score=49.43 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+...+++.|++|+|||+|++.+...
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3456999999999999999999854
No 424
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.54 E-value=0.0015 Score=47.18 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy17231 10 KVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~ 30 (189)
.++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999964
No 425
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.54 E-value=0.0012 Score=50.74 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
.-++|+|+.|+|||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 356799999999999999998653
No 426
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.53 E-value=0.0015 Score=46.52 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+++.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999753
No 427
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.53 E-value=0.0012 Score=47.54 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
-.+++.||||+|||+++.++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999988874
No 428
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.53 E-value=0.0014 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
--++|+|++|+|||||+..+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999999864
No 429
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.53 E-value=0.0016 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
--++|+|++|+|||||+..+...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46789999999999999999863
No 430
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0013 Score=53.27 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.-.++|+|+.|||||||++.+.+-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 357899999999999999999653
No 431
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.50 E-value=0.00078 Score=51.16 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=18.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.+.+.|.|.|++||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999999864
No 432
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.50 E-value=0.002 Score=45.84 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-++.|.+.|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999654
No 433
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.50 E-value=0.0021 Score=46.50 Aligned_cols=26 Identities=31% Similarity=0.186 Sum_probs=21.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.|+..-|++.|++|+||||+++.|..
T Consensus 3 ~m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 3 AMTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 36678899999999999999999853
No 434
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.48 E-value=0.0088 Score=48.10 Aligned_cols=65 Identities=23% Similarity=0.297 Sum_probs=37.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh------------------CCCCCC-CCCcccceeeeeEEEEE---ECCeEEEEEEE
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY------------------DTFISS-SSRKSTLGLDNFNKEYK---VDDRSIQMQLW 64 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~------------------~~~~~~-~~~~~t~~~~~~~~~~~---~~~~~~~~~i~ 64 (189)
+-.-|.|+|+.++|||+|+|.|.. ..|... .....|.|+-.....+. .++....+.+.
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 334555999999999999996641 122111 11123334333322211 14556789999
Q ss_pred eCCCccc
Q psy17231 65 DTGGMER 71 (189)
Q Consensus 65 D~~g~~~ 71 (189)
||.|...
T Consensus 146 DTEG~~d 152 (457)
T 4ido_A 146 DTQGTFD 152 (457)
T ss_dssp EECCBTC
T ss_pred eccCCCC
Confidence 9999643
No 435
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.48 E-value=0.0026 Score=48.82 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+...+++.|++|+|||+|++.+...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999999753
No 436
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.46 E-value=0.0023 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+.-|+|+||+|||||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 446889999999999999999743
No 437
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.0023 Score=51.33 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.++-.|++.||||+|||+|++++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 34568999999999999999999853
No 438
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.42 E-value=0.0019 Score=50.26 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-++.|+|++|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998764
No 439
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.42 E-value=0.0023 Score=50.44 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
+.-.++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345788999999999999999985
No 440
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.41 E-value=0.0021 Score=49.69 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy17231 11 VILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~ 30 (189)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999976
No 441
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.41 E-value=0.0026 Score=48.89 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+...+++.|++|+|||+|++.+...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHHH
Confidence 34467999999999999999999854
No 442
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.40 E-value=0.0025 Score=46.59 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.+...|.|+|++||||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999999874
No 443
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.40 E-value=0.0019 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.+++.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999753
No 444
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.40 E-value=0.002 Score=48.68 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 445
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0025 Score=50.97 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
++--+++.||||+|||+|++++.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4456999999999999999999853
No 446
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.0026 Score=50.99 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.++--|++.||||+|||+|++++.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35568999999999999999999853
No 447
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.31 E-value=0.0023 Score=51.37 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-++.|+|++|+|||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 478999999999999999998654
No 448
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.31 E-value=0.002 Score=47.13 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=18.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++..-|++.|++||||||++++|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999999863
No 449
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.30 E-value=0.0023 Score=49.80 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.-.++|.|++|+|||||++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999753
No 450
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.30 E-value=0.0027 Score=43.17 Aligned_cols=20 Identities=35% Similarity=0.502 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy17231 10 KVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~ 29 (189)
-.+|+|+.|+|||||+.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999985
No 451
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.0032 Score=48.65 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy17231 11 VILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~ 31 (189)
+++.|++|+||||+++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999764
No 452
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.27 E-value=0.0032 Score=50.21 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.+.-|+++|++||||||+.++|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999974
No 453
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.24 E-value=0.0036 Score=48.64 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
...+++.|++|+|||+|++.+...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999753
No 454
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.24 E-value=0.0026 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
-.+.|+|++|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4577999999999999999964
No 455
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0029 Score=50.20 Aligned_cols=26 Identities=38% Similarity=0.447 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.++--|++.||||+|||.|++++.+.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999853
No 456
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.23 E-value=0.0028 Score=52.27 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
.-.+.++|+.|+|||||++.+.+..
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998754
No 457
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.22 E-value=0.003 Score=49.27 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 458
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.20 E-value=0.0016 Score=43.91 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
...|++.|++|+|||++.+.+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999998874
No 459
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.20 E-value=0.0033 Score=49.03 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+...+++.|++|+|||++++.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999754
No 460
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.20 E-value=0.0028 Score=47.60 Aligned_cols=22 Identities=32% Similarity=0.193 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
--++|+|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999999874
No 461
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.18 E-value=0.0037 Score=47.53 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHH
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~ 29 (189)
+.-.++++|++|+||||++..|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34578899999999999999985
No 462
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.17 E-value=0.0035 Score=49.13 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
....+++.|++|+|||++++.+...
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999753
No 463
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.16 E-value=0.0028 Score=52.78 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.-.+.++|++|+|||||++.+.+-
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 347899999999999999999754
No 464
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.15 E-value=0.0043 Score=47.44 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~ 29 (189)
.-.++++|++|+||||++..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 4568899999999999999995
No 465
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.14 E-value=0.0034 Score=48.96 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+...|++.|++|+|||+|++.+...
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999854
No 466
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.14 E-value=0.0032 Score=45.95 Aligned_cols=21 Identities=29% Similarity=0.543 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy17231 9 QKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~ 29 (189)
--++++|++|+|||||+..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999988775
No 467
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.12 E-value=0.0014 Score=48.67 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..+++.|++|+|||+|++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999999975
No 468
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.11 E-value=0.0032 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.441 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
-.+.++|++|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47889999999999999999754
No 469
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.10 E-value=0.0044 Score=45.41 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
...|++-|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999999753
No 470
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.10 E-value=0.0033 Score=44.98 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
...|+|+|++|+|||+|...|....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999999998543
No 471
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.08 E-value=0.003 Score=49.12 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
..-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999743
No 472
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.07 E-value=0.0043 Score=45.65 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 5 KVPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 5 ~~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.|+..-|++.|++|+||||+++.|..
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35567899999999999999999853
No 473
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.06 E-value=0.0043 Score=48.36 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+...+++.|++|+|||+|++.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999753
No 474
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.06 E-value=0.0038 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
...+++.|++|+|||+|++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 356899999999999999999754
No 475
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.06 E-value=0.0037 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999754
No 476
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.05 E-value=0.0053 Score=47.52 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.-|+|+|++|||||||...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999974
No 477
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.01 E-value=0.0045 Score=49.72 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
++.+|++.|++|+|||++.+++..
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999953
No 478
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.0048 Score=49.25 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.++--|++.||||+|||+|++++.+.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 34567999999999999999999853
No 479
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.99 E-value=0.0036 Score=51.59 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.++|+.|+|||||++.+.+..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 467899999999999999998754
No 480
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.0052 Score=51.38 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDTF 33 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~~ 33 (189)
--.+.|+|+.|+|||||++.+.+...
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCC
Confidence 34688999999999999999986543
No 481
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.0043 Score=50.01 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.++--|++.||||+|||+|++++.+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 35668999999999999999999853
No 482
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.97 E-value=0.0054 Score=50.61 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+...++++|++|+|||||++.+...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999743
No 483
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.96 E-value=0.0043 Score=48.62 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy17231 11 VILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~ 29 (189)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999986
No 484
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.96 E-value=0.0053 Score=46.95 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
...+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 485
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.96 E-value=0.0046 Score=45.89 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
...++|.|++|+|||+|++.+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4579999999999999999998653
No 486
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.95 E-value=0.0065 Score=47.35 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHH
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYA 29 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~ 29 (189)
..+|+++|++|+||||+.+.|.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 4679999999999999998874
No 487
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.94 E-value=0.0046 Score=47.39 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999999754
No 488
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.94 E-value=0.0048 Score=43.41 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy17231 11 VILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 11 i~i~G~~g~GKTtli~~l~~~ 31 (189)
++|+|.+|||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999854
No 489
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.94 E-value=0.0047 Score=48.16 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.-.++|.|++|+|||+|++.+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999753
No 490
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.0036 Score=48.10 Aligned_cols=26 Identities=8% Similarity=-0.008 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.+.-.++|.|+||+|||++++.+...
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34568899999999999999999743
No 491
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.93 E-value=0.0043 Score=51.91 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy17231 10 KVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~ 30 (189)
.+.|+|+.|+|||||++.+.+
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhC
No 492
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.91 E-value=0.0055 Score=49.25 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 7 PEQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 7 ~~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
+...+++.|++|+|||+|++.+...
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999864
No 493
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.91 E-value=0.0045 Score=51.03 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
.+.|+|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998654
No 494
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.90 E-value=0.0045 Score=48.20 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
--+.|+|++|+|||||+..+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999864
No 495
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.90 E-value=0.005 Score=50.78 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAYDT 32 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~~~ 32 (189)
-.+.|+|+.|+|||||++.+.+..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998754
No 496
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.90 E-value=0.0045 Score=50.53 Aligned_cols=22 Identities=45% Similarity=0.591 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy17231 10 KVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 10 ~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999854
No 497
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.89 E-value=0.0042 Score=50.29 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAYD 31 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~~ 31 (189)
.-+++++|++|+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998643
No 498
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.89 E-value=0.0058 Score=49.58 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy17231 9 QKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 9 ~~i~i~G~~g~GKTtli~~l~~ 30 (189)
..++++|++|+|||+|++.+.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999985
No 499
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.88 E-value=0.0047 Score=49.64 Aligned_cols=23 Identities=22% Similarity=0.470 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 8 EQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 8 ~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.-.+++.|++|+|||+|++.+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999975
No 500
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.88 E-value=0.007 Score=48.79 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHh
Q psy17231 6 VPEQKVILCGEYGVGKSSLFRRYAY 30 (189)
Q Consensus 6 ~~~~~i~i~G~~g~GKTtli~~l~~ 30 (189)
.+...+++.||||+|||+|.+.+..
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCcCCHHHHHHHHHH
Confidence 3456799999999999999999964
Done!