RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17231
(189 letters)
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 131 bits (331), Expect = 7e-39
Identities = 61/193 (31%), Positives = 87/193 (45%), Gaps = 23/193 (11%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
M S K KVI+ G+ GVGK+SL +Y F + K+T+G D KE VDDR +
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVMVDDRLVT 58
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 115
MQ+WDT G ER S+ ++Y+ A+ +LVF + +F L E + A EN
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 116 KIFLCGN--------------NEQCHNLISSTY-KTSCKTGEGVEEMFADIGRQLILSNR 160
+ GN C++ + Y +TS K VE+ F I R L
Sbjct: 119 PFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN-ALKQE 177
Query: 161 SRLELQTMGAGGI 173
+ +EL I
Sbjct: 178 TEVELYNEFPEPI 190
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 131 bits (331), Expect = 1e-38
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 25/189 (13%)
Query: 1 MASIKVPEQ----KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD 56
MAS E K++L G+ G GK++ +R+ F +TLG++ + +
Sbjct: 4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFHTNR 61
Query: 57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK 116
I+ +WDT G E+ + YY A+ AI++F + + ++ + ++V EN
Sbjct: 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP 121
Query: 117 IFLCGN------------NEQCH---NLISSTYKTSCKTGEGVEEMFADIGRQLILSNRS 161
I LCGN + H NL Y S K+ E+ F + R+LI
Sbjct: 122 IVLCGNKVDIKDRKVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPFLWLARKLI--GDP 177
Query: 162 RLELQTMGA 170
LE M A
Sbjct: 178 NLEFVAMPA 186
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 127 bits (323), Expect = 3e-38
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 17/162 (10%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G VGKSS+ +RY F K T+G+D ++ +V+D +++ LWDT G
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDY--KKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN------- 122
E +IT +YY+ A+A +LVFS + SF +S ++V + L N
Sbjct: 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 123 ----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
NE+ L Y+TS K V E+F + + +
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 124 bits (315), Expect = 7e-37
Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 22/167 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KVIL G+ GVGKSSL RY + F + T+G++ NK+ +VD + MQ+WDT G
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGN-- 122
ER S+ + +Y+ ++ +L FS+D++ SF LS E + YA E+ + GN
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 123 ------------NEQCHNLISSTY-KTSCKTGEGVEEMFADIGRQLI 156
C + Y +TS K V F + R+++
Sbjct: 127 DISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 122 bits (308), Expect = 8e-36
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L GE VGK+SL RY + F +TLG K+ + + + + +WDT G
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKH--ITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER ++ YY+ + AILV+ + + SF + + E+ + + GN
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
++ + S Y TS K +G+EE+F D+ +++I
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 121 bits (307), Expect = 1e-35
Identities = 50/162 (30%), Positives = 83/162 (51%), Gaps = 17/162 (10%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G+ GVGKSSL R+A +TF S +T+G+D + +++ +++Q+WDT G
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN------- 122
ER +ITS+YY+ I+V+ + +A SF + + L EI ++ L GN
Sbjct: 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128
Query: 123 ----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
E + ++TS K VEEMF I ++
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVL 170
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 121 bits (306), Expect = 2e-35
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 17/162 (10%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+ D F S +T+G+D K ++ + +++Q+WDT G
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER +IT++YY+ A ILV+ + + +F + Q + +A + A++ L GN
Sbjct: 63 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122
Query: 129 LISST--------------YKTSCKTGEGVEEMFADIGRQLI 156
+ + ++S K + V E+F + + +
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 164
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 120 bits (304), Expect = 3e-35
Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 22/164 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L GE VGKSSL R+ F +ST+G + +DD +++ ++WDT G
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQ--ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L GN
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 123 ------NE-----QCHNLISSTYKTSCKTGEGVEEMFADIGRQL 155
E ++L+ +TS KT V E+F I ++L
Sbjct: 126 KRAVDFQEAQSYADDNSLLF--METSAKTSMNVNEIFMAIAKKL 167
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 122 bits (307), Expect = 3e-35
Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++ GE VGK+SL R+ YD+F ++ ++T+G+D +K ++DR++++QLWDT G+
Sbjct: 18 KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGL 75
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER S+ SY + + A++V+ + N SF ++ + ++ T + I L GN
Sbjct: 76 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 135
Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQL 155
E+ +TS K G V+++F + L
Sbjct: 136 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 121 bits (305), Expect = 3e-35
Identities = 25/174 (14%), Positives = 62/174 (35%), Gaps = 27/174 (15%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD---RSIQMQLWDT 66
K+++ G G GK++L ++ + +T+G+D + ++ D R + + +WD
Sbjct: 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 67 GGMERVASITSSYYKFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYAENAKIFLCGN--- 122
G E S + + V+ L + + L I A ++ + L G
Sbjct: 64 AGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLD 123
Query: 123 --------------NEQCHN------LISSTYKTSCKTGEGVEEMFADIGRQLI 156
++ N + + + + + + ++ I + +
Sbjct: 124 VSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 121 bits (305), Expect = 3e-35
Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 25/184 (13%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD-DRSI 59
M+S K KVI+ G+ GVGK+SL RY D + K+T+G D KE VD D+
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQY--KATIGADFLTKEVTVDGDKVA 58
Query: 60 QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----EN 114
MQ+WDT G ER S+ ++Y+ A+ +LV+ + NA+SF + E + +A E
Sbjct: 59 TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET 118
Query: 115 AKIFLCGN----------------NEQCHNLISSTYK-TSCKTGEGVEEMFADIGRQLIL 157
+ GN E +L TS K V+ F +I R +
Sbjct: 119 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178
Query: 158 SNRS 161
N++
Sbjct: 179 QNQA 182
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 120 bits (304), Expect = 4e-35
Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++ GE VGK+SL R+ YD+F ++ ++T+G+D +K ++DR++++QLWDT G
Sbjct: 16 KLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 73
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER S+ SY + + A++V+ + N SFH S+ + ++ T + I L GN
Sbjct: 74 ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133
Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQL 155
E+ +TS K G V+++F + L
Sbjct: 134 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 120 bits (303), Expect = 5e-35
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ G GKSSL R+ D F ++ST+G F++ V+D +++ ++WDT G
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQF--VEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER S+ YY+ A AAI+VF + N ASF + + E+ N + L GN
Sbjct: 72 ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131
Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQL 155
E +TS KT V+E+F +I R+L
Sbjct: 132 ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 120 bits (304), Expect = 7e-35
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 24/169 (14%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ VGKSS R + F + +TLG+D K VD +QLWDT G
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENI--SATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER SI SY++ A+ +L++ + SF + + + I A E I L GN +
Sbjct: 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147
Query: 129 LISSTYK---------------------TSCKTGEGVEEMFADIGRQLI 156
++ + TS K G + E + R++
Sbjct: 148 TAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 121 bits (305), Expect = 7e-35
Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 18/191 (9%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+ D F S +T+G+D K ++ + +++QLWDT G
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER +IT++YY+ A ILV+ + + +F + Q + +A + A++ L GN
Sbjct: 80 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139
Query: 129 LISST--------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAGGIG 174
+ + ++S K + V E+F + + I +L +G G G
Sbjct: 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL-IQEKIDSNKLVGVGNGKEG 198
Query: 175 TDSFKLGGRGS 185
S G S
Sbjct: 199 NISINSGSGNS 209
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 119 bits (302), Expect = 7e-35
Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV L G+ GVGKSS+ R+ D+F + T+G K + + + +WDT G+
Sbjct: 8 KVCLLGDTGVGKSSIMWRFVEDSF--DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER ++ YY+ + AAI+V+ + +F L + E+ + + + + GN
Sbjct: 66 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125
Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
+ S +TS K + E+F +I R++
Sbjct: 126 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 120 bits (302), Expect = 1e-34
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 19/179 (10%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G+ GVGKS+L R+ + F S KST+G++ + +VD ++I+ Q+WDT G
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER ITS+YY+ A A+LV+ + ++ + + L E+ +A N I L GN +
Sbjct: 65 ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124
Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAGG 172
L + TS VEE F +I + I S+ ++ A
Sbjct: 125 LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE-IYRIVSQKQIADRAAHD 182
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 119 bits (301), Expect = 1e-34
Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV L G+ GVGKSS+ R+ D F + T+G K + + +WDT G
Sbjct: 25 KVCLLGDTGVGKSSIVCRFVQDHF--DHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ 82
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER S+ YY+ + AA++V+ + SF+ L + + E+ + EN + + GN
Sbjct: 83 ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142
Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQL 155
+ S +TS K +EE+F I RQ+
Sbjct: 143 IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 119 bits (301), Expect = 2e-34
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 19/164 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ VGK+ + +R+ F ST+G+D K ++ + +++Q+WDT G
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER +IT SYY+ A AIL + + +SF + + ++ YA N L GN
Sbjct: 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148
Query: 123 -----NEQCHNL-----ISSTYKTSCKTGEGVEEMFADIGRQLI 156
+ +L I +TS K VEE F + +LI
Sbjct: 149 LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 119 bits (300), Expect = 2e-34
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G VGK+S RYA D+F + ST+G+D K D+ I++Q+WDT G
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAF--VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER +IT++YY+ A +L++ + N SF + +I TY+ +NA++ L GN
Sbjct: 82 ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
E L ++ S K V+++F + +
Sbjct: 142 ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVIC 184
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 119 bits (301), Expect = 3e-34
Identities = 42/180 (23%), Positives = 64/180 (35%), Gaps = 25/180 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNF-NKEYKVDDRSIQMQLWDTGG 68
K+ L G+ GVGK++ R F + +T+G N I+ +WDT G
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNY--NATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN----- 122
E+ A + YY A AIL F + + + L++ + E A I +C N
Sbjct: 71 QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130
Query: 123 NEQC------------HNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGA 170
N Q N ++ S KT F + R R L +
Sbjct: 131 NRQKISKKLVMEVLKGKNY--EYFEISAKTAHNFGLPFLHLARIFT--GRPDLIFVSNVN 186
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 119 bits (300), Expect = 3e-34
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 19/193 (9%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G GVGKS L R++ DT+ + ST+G+D K ++D +++++Q+WDT G
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDY--ISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER +ITSSYY+ + I+V+ + + SF+ + L EI YA L GN
Sbjct: 68 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127
Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAGGI 173
+ + +TS VE+ F + RQ I + S+ L
Sbjct: 128 KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ-IKESMSQQNLNETTQKKE 186
Query: 174 GTDSFKLGGRGSE 186
+ L G+
Sbjct: 187 DKGNVNLKGQSLT 199
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 118 bits (299), Expect = 3e-34
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGK+ + R++ D F S+ ST+G+D + ++D + I++Q+WDT G
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER +IT++YY+ A +LV+ + N SF + + I +A + + + GN
Sbjct: 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127
Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
E+ L +TS K VE F + R +
Sbjct: 128 KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 170
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 118 bits (298), Expect = 3e-34
Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 17/163 (10%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G+ GVGK+ L R+ F + + ST+G+D NK VD +++Q+WDT G
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAF-LAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER S+T +YY+ A A +L++ + N ASF + L EI YA + + L GN
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
E L +TS KTG V+ F I ++L
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 119 bits (301), Expect = 3e-34
Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 19/192 (9%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS+L R+ + F S KST+G++ + +++ + I+ Q+WDT G
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDS--KSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER +ITS+YY+ A A++V+ + ++S+ + L E+ A +N + L GN +
Sbjct: 73 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132
Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAGGI 173
L + + TS E V++ F ++ I S+ ++ +
Sbjct: 133 LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINT-IYQKVSKHQMDLGDSSAN 191
Query: 174 GTDSFKLGGRGS 185
G + G
Sbjct: 192 GNANGASAPNGP 203
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 118 bits (298), Expect = 3e-34
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 23/180 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G G GKS L ++ F S T+G++ +K V + +++Q+WDT G
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER S+T SYY+ A A+LV+ + + +++ L+ L + A +N I LCGN
Sbjct: 70 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA 129
Query: 123 ------NE-----QCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAG 171
E Q + L +TS TGE VEE F R+ IL+ EL G
Sbjct: 130 DREVTFLEASRFAQENEL--MFLETSALTGENVEEAFVQCARK-ILNKIESGELDPERMG 186
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 118 bits (298), Expect = 4e-34
Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ GE GVGKSSL R+ DTF +T+G+D K VD ++ +WDT G
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI--FLCGNNEQCH 127
ER ++T SYY+ A+ ILV+ + +F L L E+ TY I L GN
Sbjct: 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134
Query: 128 NLISST--------------YKTSCKTGEGVEEMFADIGRQLILSNRSRLELQTMGAG 171
N + S KT +GV+ F ++ + I+ E + +G
Sbjct: 135 NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEK-IIQTPGLWESENQNSG 191
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 118 bits (298), Expect = 5e-34
Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G VGK+S RYA DTF + ST+G+D K ++ +++Q+WDT G
Sbjct: 25 KLLIIGNSSVGKTSFLFRYADDTFTPAF--VSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L GN
Sbjct: 83 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
E+ L ++ S K V + F + +
Sbjct: 143 ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAIC 185
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 118 bits (297), Expect = 5e-34
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 18/162 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G+ GVGKS+L R+ + F S KST+G++ + +VD ++I+ Q+WDT G+
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER +ITS+YY+ A A+LV+ + ++ + + L E+ +A N I L GN
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148
Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQL 155
++ +TS VE F I ++
Sbjct: 149 LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 118 bits (297), Expect = 5e-34
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 23/166 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
+VI+ G GVGK+SL R+ DTF + KST+G+D K ++ + I++Q+WDT G
Sbjct: 28 QVIIIGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNN----- 123
ER SITS+YY+ A+ ILV+ + +F L + + I YA E+A++ L GN
Sbjct: 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 124 -------------EQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
+Q + + S K V+E+F + ++
Sbjct: 146 DREITRQQGEKFAQQITGM--RFCEASAKDNFNVDEIFLKLVDDIL 189
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 118 bits (298), Expect = 6e-34
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G VGK+S RYA D+F + ST+G+D K +D+ I++Q+WDT G+
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAF--VSTVGIDFKVKTIYRNDKRIKLQIWDTAGL 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L GN
Sbjct: 68 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127
Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
+E+ L ++ S K V++ F + +
Sbjct: 128 ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 170
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 118 bits (297), Expect = 7e-34
Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+A DT+ S ST+G+D + ++D ++I++Q+WDT G
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L GN
Sbjct: 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152
Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
S +TS K VE+ F + ++
Sbjct: 153 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 117 bits (296), Expect = 7e-34
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS-IQMQLWDTGG 68
K+++ G+ GK+SL +A +TF K T+GLD F + + + +Q+WD GG
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQY--KQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65
Query: 69 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK----IFLCGN-- 122
+ Y A+ +LV+ + N SF L + +E ++ + L GN
Sbjct: 66 QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125
Query: 123 ----------NE-----QCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
+ Q + S + S KTG+ V F + +++
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSS--HFVSAKTGDSVFLCFQKVAAEIL 172
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 118 bits (297), Expect = 8e-34
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 23/175 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G G GKS L ++ + F S T+G++ ++ V +++++Q+WDT G
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDS--NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER S+T SYY+ A A+LV+ + + +++ L+ L + T A N + LCGN
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144
Query: 123 ------NE-----QCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSNRSRLELQ 166
E Q + L +TS TGE VEE F R IL+ EL
Sbjct: 145 EREVTFLEASRFAQENEL--MFLETSALTGENVEEAFLKCART-ILNKIDSGELD 196
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 117 bits (296), Expect = 9e-34
Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GVGKS L R+A DT+ S ST+G+D + ++D ++I++Q+WDT G
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L GN
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135
Query: 123 -----NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
S +TS K VE+ F + ++
Sbjct: 136 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 117 bits (296), Expect = 1e-33
Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G GVGK+ L RR+ F +T+G+D K +++ +++Q+WDT G
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER SIT SYY+ A A IL + + SF L + L EI YA L GN
Sbjct: 86 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE 145
Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQLI 156
+ + TS K + VE++F D+ +LI
Sbjct: 146 RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 116 bits (294), Expect = 2e-33
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L GE GVGK++L R+ + F S ++T+G++ + + +++ Q+WDT G+
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDS--RTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER +ITS+YY+ A A+LVF L ++ V+ + L E+ +A + L GN
Sbjct: 85 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ 144
Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQLI 156
+ TS VE F + +++
Sbjct: 145 AREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 116 bits (292), Expect = 3e-33
Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 23/168 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K I+ G+ GVGKS L ++ F++ T+G++ + +V + I++Q+WDT G
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGN------ 122
ER ++T SYY+ A A++V+ + ++++ LS L + N I L GN
Sbjct: 75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134
Query: 123 ------NE-----QCHNLISSTYKTSCKTGEGVEEMFADIGRQLILSN 159
E + + L + S KTGE VE+ F + ++ I N
Sbjct: 135 QRDVTYEEAKQFAEENGL--LFLEASAKTGENVEDAFLEAAKK-IYQN 179
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 114 bits (288), Expect = 1e-32
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K I+ G+ GVGKS L ++ F T+G++ + +D + I++Q+WDT G
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
E SIT SYY+ A A+LV+ + +F+ L+ L + ++ N I L GN +
Sbjct: 81 ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140
Query: 129 LISSTYK---------------TSCKTGEGVEEMFADIGRQLI 156
+ TS KT VEE F + +++
Sbjct: 141 RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 183
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 113 bits (285), Expect = 2e-32
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 21/165 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L GE VGKSS+ R+ + F + +++ T+G + +++ +++ ++WDT G
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDF--AENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNNEQCHN 128
ER AS+ YY+ A+AA++V+ + SF + E+ A ++ I L GN
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 129 LISST------------------YKTSCKTGEGVEEMFADIGRQL 155
++TS KTGE V ++F IG ++
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 111 bits (281), Expect = 1e-31
Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 22/173 (12%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
M K+++ G GVGKS+L ++ F+S T+ D++ K VD +
Sbjct: 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD--PTIE-DSYTKICSVDGIPAR 58
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF 118
+ + DT G E ++ Y + +LVF++++ SF+ + + +I+ ++ +
Sbjct: 59 LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV 118
Query: 119 LCGN-----------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQL 155
L GN + +++ S K V+E F + R +
Sbjct: 119 LVGNKADLESQRQVPRSEASAF-GASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 110 bits (278), Expect = 3e-31
Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
+ E K+++ G GVGKS+L + + F+ T+ D++ K+ +D + + + D
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEC--DPTIE-DSYRKQVVIDGETCLLDILD 57
Query: 66 TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGN- 122
T G E +++ Y + E + VF+++N SF + Q+ +I ++ + L GN
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 117
Query: 123 ---------NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
+ Q +L S +TS KT +GVE+ F + R++
Sbjct: 118 SDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 111 bits (280), Expect = 3e-31
Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 28/186 (15%)
Query: 1 MASIKVPEQ------KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKV 54
MA+ K Q KVI+ G GVGKS+L ++ YD F+ + T D++ K+ +
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKA-DSYRKKVVL 57
Query: 55 DDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-- 112
D +Q+ + DT G E A+I +Y++ E + VFS+ SF + +I+
Sbjct: 58 DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 117
Query: 113 ENAKIFLCGN-----------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLI 156
EN L GN E+ N + + TS KT V+++F D+ R++
Sbjct: 118 ENVPFLLVGNKSDLEDKRQVSVEEAKNR-AEQWNVNYVETSAKTRANVDKVFFDLMREIR 176
Query: 157 LSNRSR 162
Sbjct: 177 ARKMED 182
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 110 bits (277), Expect = 4e-31
Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 22/165 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L GE GVGKS+L + + + D + + VD + + ++D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAH--EMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 70 ER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN---- 122
+ + +A ++VFS+ + SF + + LL + + + L GN
Sbjct: 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121
Query: 123 -------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQL 155
E+ +L + T TS E+F RQ+
Sbjct: 122 ARSREVSLEEGRHL-AGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 111 bits (279), Expect = 4e-31
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 30/191 (15%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS----------I 59
K++ G+ GVGK++ RY + F +T+G+D K + + +
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKF--ITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 60 QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKI 117
+QLWDT G ER S+T+++++ A +L+F L + SF + + ++ A EN I
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI 144
Query: 118 FLCGN-----------NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLILSNRSR 162
L GN Q L ++TS TG+ VE+ + I+ +
Sbjct: 145 VLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL-IMKRMEQ 203
Query: 163 LELQTMGAGGI 173
+T +
Sbjct: 204 CVEKTQIPDTV 214
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 110 bits (278), Expect = 5e-31
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 22/171 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
+V++ G GVGKSSL R+ TF + T+ D + + D +Q+ DT G
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTY--IPTIE-DTYRQVISCDKSVCTLQITDTTGS 66
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKIFLCGN---- 122
+ ++ A ILVFS+ + S L + +++I E+ + L GN
Sbjct: 67 HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE 126
Query: 123 ------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLILSNRSR 162
+ + + +K TS K V+E+F ++ N S
Sbjct: 127 TQREVDTREAQAV-AQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSL 176
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 116 bits (292), Expect = 5e-31
Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 28/178 (15%)
Query: 2 ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEY--------K 53
A + + E KV L G+ GK+SL ++ +TF T GL+ K+
Sbjct: 35 ALVHLQEIKVHLIGDGMAGKTSLLKQLIGETF--DPKESQTHGLNVVTKQAPNIKGLEND 92
Query: 54 VDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE 113
+ + WD GG E + + + + +L+ ++ + L I Y
Sbjct: 93 DELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLL---DSRTDSNKHYWLRHIEKYGG 149
Query: 114 NAKIFLCGN---------------NEQCHNLISSTYKTSCKTGEGVEEMFADIGRQLI 156
+ + + N NE+ + + ++ SCK G+GVE + + ++
Sbjct: 150 KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL 207
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 110 bits (277), Expect = 6e-31
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 22/170 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KVI+ G GVGKS+L ++ YD F+ + T D++ K+ +D +Q+ + DT G
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFLCGN----- 122
E A+I +Y++ E + VFS+ SF + +I+ EN L GN
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 123 ------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLILSNRS 161
E+ N + + TS KT V+++F D+ R++
Sbjct: 137 DKRQVSVEEAKNR-AEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME 185
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 110 bits (277), Expect = 7e-31
Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 22/172 (12%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L GE GVGKS+L + S+ + D + + VD + + ++D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAH--EPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 70 ER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN---- 122
+ + +A ++VFS+ + SF + + LL + + + L GN
Sbjct: 83 GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 142
Query: 123 -------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLILSNRSR 162
E+ +L + T TS E+F RQ+ L
Sbjct: 143 ARSREVSLEEGRHL-AGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRN 193
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 109 bits (274), Expect = 9e-31
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 22/167 (13%)
Query: 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
+ KVI+ G GVGKS+L ++ YD F+ + T D++ K+ +D +Q+ + D
Sbjct: 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDY--EPTKA-DSYRKKVVLDGEEVQIDILD 58
Query: 66 TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN- 122
T G E A+I +Y++ E + VFS+ SF + +I V EN L GN
Sbjct: 59 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118
Query: 123 ----------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQ 154
E+ N + + TS KT V+++F D+ R+
Sbjct: 119 SDLEDKRQVSVEEAKNR-ADQWNVNYVETSAKTRANVDKVFFDLMRE 164
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 109 bits (274), Expect = 1e-30
Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 23/173 (13%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
+ +V + G GVGKSSL R+ TF S T+ D + + D +Q+ DT
Sbjct: 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESY--IPTVE-DTYRQVISCDKSICTLQITDTT 59
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK---IFLCGN-- 122
G + ++ A ILV+S+ + S L +I + + I L GN
Sbjct: 60 GSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKC 119
Query: 123 ---------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLILSNRS 161
+ + L + T+K TS K V+E+F ++ S
Sbjct: 120 DESPSREVQSSEAEAL-ARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 171
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 109 bits (275), Expect = 1e-30
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 29/174 (16%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVD----------DRSI 59
K + G+ GVGK+S+ +Y F S +T+G+D K + I
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKF--ITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 60 QMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKI 117
+QLWDT G+ER S+T+++++ A +L+F L N SF + + ++ +A EN I
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDI 130
Query: 118 FLCGN-----------NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
LCGN E+ L ++TS G + + ++
Sbjct: 131 VLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 108 bits (273), Expect = 2e-30
Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 21/174 (12%)
Query: 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDT 66
E K+++ G GVGKS+L + + F+ T+ D++ K+ +D + + + DT
Sbjct: 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD--PTIE-DSYRKQVVIDGETCLLDILDT 76
Query: 67 GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGN-- 122
G E +++ Y + E + VF+++N+ SF ++ + +I ++ + L GN
Sbjct: 77 AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC 136
Query: 123 --------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLILSNRSRL 163
+Q H L + +Y TS KT +GVE+ F + R++ +L
Sbjct: 137 DLPTRTVDTKQAHEL-AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKL 189
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 108 bits (271), Expect = 3e-30
Identities = 33/183 (18%), Positives = 75/183 (40%), Gaps = 31/183 (16%)
Query: 2 ASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQM 61
+ +PE ++ + G+ GKSSL R+ ++ + T + + KE VD ++ +
Sbjct: 1 SMRSIPELRLGVLGDARSGKSSLIHRFLTGSY---QVLEKTES-EQYKKEMLVDGQTHLV 56
Query: 62 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY----AENAKI 117
+ + G + +A+A I VFSL++ SF +S+ ++ + +
Sbjct: 57 LIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL 111
Query: 118 FLCGN-------------NEQCHNLISST-----YKTSCKTGEGVEEMFADIGRQLILSN 159
L G + + L + Y+T G V+ +F ++ ++++
Sbjct: 112 ALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLR 171
Query: 160 RSR 162
+ +
Sbjct: 172 KQQ 174
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 108 bits (272), Expect = 5e-30
Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 22/164 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV++ G VGK+SL ++ F T+ + ++K + + L DT G
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGY--DPTVE-NTYSKIVTLGKDEFHLHLVDTAGQ 82
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN----- 122
+ + + S+ +LV+S+ + SF V+ ++ + L GN
Sbjct: 83 DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142
Query: 123 ------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQL 155
+ L + ++ +S + + + +F + +++
Sbjct: 143 PEREVQAVEGKKL-AESWGATFMESSARENQLTQGIFTKVIQEI 185
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 107 bits (270), Expect = 5e-30
Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 30/180 (16%)
Query: 3 SIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQ 62
+ PE KV + G GKS+L RY T++ S G F KE VD +S +
Sbjct: 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE---SPEG-GRFKKEIVVDGQSYLLL 70
Query: 63 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLC 120
+ D GG + + + +A + VFSL++ SF + + L + ++ + L
Sbjct: 71 IRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLV 125
Query: 121 GN-------------NEQCHNLISST-----YKTSCKTGEGVEEMFADIGRQLILSNRSR 162
G + + L + Y+T G VE +F D+ ++ +++ R +
Sbjct: 126 GTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQK-VVALRKK 184
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 107 bits (270), Expect = 6e-30
Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 23/173 (13%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
+ S +P K+++ G+ GVGKS+L ++ F+ T+ D++ K ++D++
Sbjct: 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY--DPTIE-DSYLKHTEIDNQWAI 67
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 118
+ + DT G E +++ Y + + ++V+S+ + ASF + + I+ E+ +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 119 LCGN-----------NEQCHNLISSTYK-----TSCKTGE-GVEEMFADIGRQ 154
L N +Q + ++ Y TS K V++ F D+ R
Sbjct: 128 LVANKVDLMHLRKVTRDQGKEM-ATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 107 bits (269), Expect = 6e-30
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 22/166 (13%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E KV++ G GVGKS+L ++ TFI T+ D + KE +VD +++ DT
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY--DPTIE-DFYRKEIEVDSSPSVLEILDTA 59
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
G E+ AS+ Y K + ILV+SL N SF + +I V E + L GN
Sbjct: 60 GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
Query: 123 --------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQL 155
+ + L + + TS K+ V+E+FA+I RQ+
Sbjct: 120 LESEREVSSSEGRAL-AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 106 bits (267), Expect = 2e-29
Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E K+++ G GVGKS+L + + F+ T+ D++ K+ +D + + + DT
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEY--DPTIE-DSYRKQVVIDGETCLLDILDTA 60
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGN--- 122
G E +++ Y + E + VF+++N SF + + +I E+ + L GN
Sbjct: 61 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120
Query: 123 -------NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLI 156
+Q +L S +TS KT +GV++ F + R++
Sbjct: 121 LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 106 bits (267), Expect = 2e-29
Identities = 39/173 (22%), Positives = 69/173 (39%), Gaps = 24/173 (13%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
M K +K+ + G VGKSSL ++ F+ S T+ + F K V+ +
Sbjct: 1 MPQSK--SRKIAILGYRSVGKSSLTIQFVEGQFVDSYD--PTIE-NTFTKLITVNGQEYH 55
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 118
+QL DT G + + +Y ILV+S+ + SF V+ ++ + I
Sbjct: 56 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 115
Query: 119 LCGN-----------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQL 155
L GN E+ L + ++ +S K + ++F I +
Sbjct: 116 LVGNKKDLHMERVISYEEGKAL-AESWNAAFLESSAKENQTAVDVFRRIILEA 167
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 104 bits (262), Expect = 6e-29
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 6 VPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
+ E K+++ G GVGKS+L ++ F+ T+ D++ K+ +VD + +++ D
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYD--PTIE-DSYRKQVEVDCQQCMLEILD 57
Query: 66 TGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN- 122
T G E+ ++ Y K + LV+S+ ++F+ L +I V E+ + L GN
Sbjct: 58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 117
Query: 123 ----------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQ 154
EQ NL +S K+ V E+F D+ RQ
Sbjct: 118 CDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQ 164
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 104 bits (262), Expect = 9e-29
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 28/173 (16%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+I+ G+ VGK+ L R+ F + ++T+G+D + +D I++QLWDT G
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 70 ER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGN---- 122
ER S+ YY+ A + V+ + N ASFH L + E + + L GN
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 123 --------NE-----QCHNLISSTYKTSCKT---GEGVEEMFADIGRQLILSN 159
+ H++ ++TS K + VE +F + + + S+
Sbjct: 140 RSAIQVPTDLAQKFADTHSM--PLFETSAKNPNDNDHVEAIFMTLAHK-LKSH 189
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 103 bits (259), Expect = 2e-28
Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 23/164 (14%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G GVGKS+L R + + G +++ VD + ++D
Sbjct: 4 KVLLLGAPGVGKSALARIFG-GVEDGPEA--EAAG-HTYDRSIVVDGEEASLMVYDIWEQ 59
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFLCGN----- 122
+ + +A ++V+S+ + SF S+ +++ ++ I L GN
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 123 ------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQL 155
++ + + TS V+ +F + RQ+
Sbjct: 120 RSREVSVDEGRAC-AVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 103 bits (259), Expect = 2e-28
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 24/171 (14%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
+V+L G+ GVGK+SL +A LG D + + VD + + DT
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDL---HEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 70 ERVASITS--SYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN--- 122
E++ S S + A ++V+S+ + SF S+ +++ A++ I L GN
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 123 --------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLILSNR 160
E+ + + TS V E+F + RQL L R
Sbjct: 123 LARCREVSVEEGRAC-AVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRR 172
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 101 bits (254), Expect = 2e-27
Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 27/172 (15%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW--DTG 67
KV + GE VGKS+L + T G++ + D ++ ++L+ DT
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENA----KIFLCGN- 122
G + S Y+ AILVF + + SF + + + + L N
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 123 ------------NE-----QCHNLISSTYKTSCK-TGEGVEEMFADIGRQLI 156
+ + L + S G+ + F I
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTL--DFFDVSANPPGKDADAPFLSIATTFY 191
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 96.1 bits (240), Expect = 2e-25
Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 24/170 (14%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
K E K+ + G GVGKS+L R+ FI TL + + +DD + M++
Sbjct: 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY--DPTLE-STYRHQATIDDEVVSMEIL 81
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN 122
DT G E + ++ E +LV+ + + SF + + + +N + L GN
Sbjct: 82 DTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGN 140
Query: 123 -----------NEQCHNLISSTYK-----TSCKTGEG-VEEMFADIGRQL 155
E+ L ++ S TGEG + E+F ++ R++
Sbjct: 141 KADLDHSRQVSTEEGEKL-ATELACAFYECSACTGEGNITEIFYELCREV 189
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 95.8 bits (239), Expect = 3e-25
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 23/173 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS---IQMQLWDT 66
+V+L GE GVGKS+L +A S LG D + + VD S I + +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 67 GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN-- 122
G + + +A ++V+S+ + ASF S+ +++ E+ I L GN
Sbjct: 67 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 123 ---------NEQCHNLISST----YKTSCKTGEGVEEMFADIGRQLILSNRSR 162
+ +TS V+E+F I RQ+ L S+
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 95.3 bits (237), Expect = 5e-25
Identities = 48/200 (24%), Positives = 76/200 (38%), Gaps = 58/200 (29%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSI---------- 59
K +L GE VGKSS+ R DTF ++ +T+G ++D +I
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENT--NTTIGASFCTYVVNLNDINIKNNSNNEKNN 66
Query: 60 ---------------------------QMQLWDTGGMERVASITSSYYKFAEAAILVFSL 92
+ +WDT G ER ASI YY+ A AI+VF +
Sbjct: 67 NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126
Query: 93 DNAASFHVLSQHLLEIVTYAENAKIFLCGN-----------NE-----QCHNLISSTYKT 136
N+ + + ++ N I L N E Q +NL+ +T
Sbjct: 127 SNSNTLDRAKTWVNQLKIS-SNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLF--IQT 183
Query: 137 SCKTGEGVEEMFADIGRQLI 156
S KTG ++ +F + ++
Sbjct: 184 SAKTGTNIKNIFYMLAEEIY 203
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 93.4 bits (233), Expect = 2e-24
Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 24/167 (14%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E + + G G GKS+L ++ FIS L D ++ E VD + + +++ DT
Sbjct: 21 EVNLAILGRRGAGKSALTVKFLTKRFISEY--DPNLE-DTYSSEETVDHQPVHLRVMDTA 77
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK----IFLCGN- 122
++ + Y +A A ++V+S+D+ SF S +L + +A+ + L GN
Sbjct: 78 DLDTPRNCE-RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNK 136
Query: 123 ----------NEQCHNLISST----YKTSCKT-GEGVEEMFADIGRQ 154
+ L ++ S E V+ +F + R+
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 92.4 bits (230), Expect = 9e-24
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 29/176 (16%)
Query: 10 KVILCGEYGVGKSSLFRRYA--YDTFISSSSRKSTLGLDNFNKEYKVDDRSIQM---QLW 64
+V+L GE GVGKS+L +A +D+ S LG D + + VD S + +W
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCE---VLGEDTYERTLMVDGESATIILLDMW 95
Query: 65 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGN 122
+ G + + +A ++V+S+ + ASF S+ +++ E+ I L GN
Sbjct: 96 ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN 153
Query: 123 -----------NEQCHNLISSTYK-----TSCKTGEGVEEMFADIGRQLILSNRSR 162
+ + + TS V+E+F I RQ+ L S+
Sbjct: 154 KSDLVRCREVSVSEGRAC-AVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 208
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 90.5 bits (225), Expect = 3e-23
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 22/158 (13%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G+ VGK+ L ++ ++ T+ +NF+ K + + LWDT G
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYV--PTVF-ENFSHVMKYKNEEFILHLWDTAGQ 81
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN----NE 124
E + Y ++ +L F+++N SF + ++ EI Y + AK L G +
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141
Query: 125 QCHNLISS-------------TY-KTSCKTGEGVEEMF 148
+ ++ Y + S G+ E+F
Sbjct: 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 87.4 bits (217), Expect = 3e-22
Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 32/175 (18%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
M++ + K + G+ VGK+ L Y +TF + T+ DNF+ V+ ++
Sbjct: 3 MSASR--FIKCVTVGDGAVGKTCLLISYTSNTFPTDYV--PTVF-DNFSANVVVNGATVN 57
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 119
+ LWDT G E + Y+ A+ IL FSL + AS+ V + + E+ YA I L
Sbjct: 58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVL 117
Query: 120 CGN---------------------NEQCHNLISS----TY-KTSCKTGEGVEEMF 148
G Q L Y + S K+ E V+ +F
Sbjct: 118 VGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 85.2 bits (211), Expect = 2e-21
Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 32/168 (19%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F DN++ VD + + + LWDT G
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYI---PTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN------ 122
E + Y + +++ FSL + ASF +V ++ E+ + N I L G
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 123 --------NEQCHNLISST--------------YKTSCKTGEGVEEMF 148
E+ I+ + S T G++ +F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 85.1 bits (211), Expect = 3e-21
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G+ GK++L +A D F + T+ +N+ +++D + I++ LWDT G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYV--PTVF-ENYTASFEIDTQRIELSLWDTSGS 65
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN 122
++ Y ++A ++ F + + VL + EI + N K+ L G
Sbjct: 66 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 119
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 85.7 bits (212), Expect = 3e-21
Identities = 23/114 (20%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K++L G+ GK+++ + A D + + +N+ + +++ +++ LWDT G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYV---PTVFENYTACLETEEQRVELSLWDTSGS 85
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN 122
++ Y ++A +L F + + L + EI+ Y + ++ L G
Sbjct: 86 PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGC 139
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 84.8 bits (210), Expect = 7e-21
Identities = 30/168 (17%), Positives = 63/168 (37%), Gaps = 32/168 (19%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
KV+L G+ G GK+SL +A F S + T+ + + +V + + + +WDT G
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYT--PTVF-ERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGN------ 122
+ + +Y A +L F + + SF ++ ++ E+ + + I + G
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 123 --------NEQCHNLISST--------------YKTSCKTGEGVEEMF 148
++ + S + + V +F
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 84.4 bits (209), Expect = 8e-21
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
MA+I+ K+++ G+ GK+ L ++ D F T+ +N+ + +VD + ++
Sbjct: 21 MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYV--PTVF-ENYIADIEVDGKQVE 74
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 119
+ LWDT G E + Y + ++ FS+D+ S + + E+ + N I L
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 134
Query: 120 CGN 122
GN
Sbjct: 135 VGN 137
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 84.4 bits (209), Expect = 9e-21
Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 32/168 (19%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G+ GK+ L ++ D F T+ +N+ + +VD + +++ LWDT G
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYV--PTVF-ENYVADIEVDGKQVELALWDTAGQ 83
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN------ 122
E + Y + ++ FS+D+ S + + + E+ + N I L N
Sbjct: 84 EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143
Query: 123 --------NEQCHNLISST--------------YKTSCKTGEGVEEMF 148
+ + + S KT EGV E+F
Sbjct: 144 DEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 81.7 bits (202), Expect = 7e-20
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L Y + F T+ DN++ VD + + + LWDT G
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYI--PTVF-DNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN 122
E + Y + ++ FSL + ASF V ++ E+ + N I L G
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 142
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 81.7 bits (202), Expect = 8e-20
Identities = 28/114 (24%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K+++ G+ GK++L +A D F + T+ +N+ +++D + I++ LWDT G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYV--PTVF-ENYTASFEIDTQRIELSLWDTSGS 86
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN 122
++ Y ++A ++ F + + VL + EI + N K+ L G
Sbjct: 87 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 81.7 bits (202), Expect = 8e-20
Identities = 41/168 (24%), Positives = 68/168 (40%), Gaps = 32/168 (19%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K +L G+ VGK+SL Y + + + T DNF+ VD R +++QL DT G
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYI--PTA-FDNFSAVVSVDGRPVRLQLCDTAGQ 78
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN------ 122
+ + Y + +L FS+ + +SF V + + EI + A I L G
Sbjct: 79 DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138
Query: 123 -----------------NEQCHNLIS----STY-KTSCKTGEGVEEMF 148
E L ++Y + S T + ++E+F
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 81.4 bits (201), Expect = 9e-20
Identities = 39/168 (23%), Positives = 62/168 (36%), Gaps = 32/168 (19%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K ++ G+ VGK+ L YA D F T+ D++ V + + L+DT G
Sbjct: 20 KCVVVGDGAVGKTCLLMSYANDAFPEEYV--PTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN------ 122
E + Y + ++ FS+ N ASF V + + E+ YA N L G
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136
Query: 123 -----------------NEQCHNLI-----SSTYKTSCKTGEGVEEMF 148
EQ L + S T +G++ +F
Sbjct: 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 79.3 bits (196), Expect = 7e-19
Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 28/164 (17%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
K + G+ VGK+ + Y + F + T+ DNF+ VD + + + LWDT G
Sbjct: 11 KCVTVGDGAVGKTCMLICYTSNKFPTDYI--PTV-FDNFSANVAVDGQIVNLGLWDTAGQ 67
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGN------ 122
E + + Y+ A+ +L FSL + AS+ VL + + E+ +A N I L G
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127
Query: 123 ----NEQCHNLISS-------------TYK-TSCKTGEGVEEMF 148
N+I+S Y S KT + V+ +F
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 67.3 bits (164), Expect = 9e-14
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQ 60
+ K ++ G+ VGK+ L Y + F DN++ VD + +
Sbjct: 148 IDEAAKELIKCVVVGDGAVGKTCLLISYTTNAF---PGEYIPTVFDNYSANVMVDGKPVN 204
Query: 61 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 119
+ LWDT G+E + Y + ++ FSL + ASFH V ++ E+ + N I L
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL 264
Query: 120 CGN 122
G
Sbjct: 265 VGT 267
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 51.5 bits (123), Expect = 1e-08
Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 9/121 (7%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSR-KSTLGLDNFNKEYKVDDRSIQMQLWDT 66
+ +++L G GKSS+ + + + + +ST K+ + + Q+WD
Sbjct: 20 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK---IYKDDISNSSFVNFQIWDF 76
Query: 67 GGMERVASITS---SYYKFAEAAILVF--SLDNAASFHVLSQHLLEIVTYAENAKIFLCG 121
G T ++ A I V D + L + + + +
Sbjct: 77 PGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI 136
Query: 122 N 122
+
Sbjct: 137 H 137
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 48.5 bits (115), Expect = 2e-07
Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSR-KSTLGLDNFNKEYKVDDRSIQMQLWDT 66
K++L G G GKSS+ + + R +T+ + ++ + LWD
Sbjct: 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID---VEHSHLRFLGNMTLNLWDC 59
Query: 67 GGMER-----VASITSSYYKFAEAAILVFSLDNAASF---HVLSQHLLEIVTYAENAKIF 118
GG + ++ + I VF +++ + ++ L ++ Y+ +AKIF
Sbjct: 60 GGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIF 119
Query: 119 LCGN 122
+ +
Sbjct: 120 VLLH 123
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 47.4 bits (113), Expect = 3e-07
Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 19/126 (15%)
Query: 1 MASI----KVPEQKVILCGEYGVGKSSLFRR--------YAYDTFISSSSRKSTLGLDNF 48
M++I + K++ G GK++ + + ++ + TL D
Sbjct: 3 MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFL 62
Query: 49 NKEYK-VDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVF------SLDNAASFHVL 101
+ V + L+ G + + + + V NA S +
Sbjct: 63 PLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNM 122
Query: 102 SQHLLE 107
++L E
Sbjct: 123 RENLAE 128
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 1e-05
Identities = 25/153 (16%), Positives = 43/153 (28%), Gaps = 48/153 (31%)
Query: 7 PEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLD----NFNKEYKVDDRSIQMQ 62
P + V++ G G GK+ + A D S + + N + +Q
Sbjct: 149 PAKNVLIDGVLGSGKTWV----ALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 63 -LW---DTGGMERVASITSSYYKFAEA---------------AILVFSLDNAASFHVLSQ 103
L D R ++ + +LV L N
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLN--------- 252
Query: 104 HLLEIVTYAENAKIFLCGNNEQCHNLISSTYKT 136
V A+ F N C L+++ +K
Sbjct: 253 -----VQNAKAWNAF----NLSCKILLTTRFKQ 276
Score = 31.4 bits (70), Expect = 0.18
Identities = 27/155 (17%), Positives = 43/155 (27%), Gaps = 43/155 (27%)
Query: 45 LDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQH 104
D F + D V + S E ++ S D + L
Sbjct: 26 EDAFVDNFDCKD---------------VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 105 LLEIVTYAEN-AKIFLCGNNEQCHNLISSTYKTSCKTGEGVEEMFAD------------- 150
LL + E + F+ + + S KT + + M+ +
Sbjct: 71 LL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 151 ---IGR-QLILSNRSRL-ELQTM------GAGGIG 174
+ R Q L R L EL+ G G G
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 43.0 bits (102), Expect = 1e-05
Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 27/161 (16%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G G GK+++ R +++ T+G FN E + +++++ +WD G
Sbjct: 18 ELRILILGLDGAGKTTILYRLQIGEVVTTKP---TIG---FNVE-TLSYKNLKLNVWDLG 70
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL--CGNN-- 123
G + YY A I V + S+ L ++ E L N
Sbjct: 71 GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
Query: 124 ----------------EQCHNLISSTYKTSCKTGEGVEEMF 148
+ + S +S GEG+ E
Sbjct: 131 QPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 41.4 bits (98), Expect = 4e-05
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G G GK+++ R +++ T+G FN E V ++++ Q+WD G
Sbjct: 7 EMRILILGLDGAGKTTILYRLQVGEVVTTIP---TIG---FNVE-TVTYKNLKFQVWDLG 59
Query: 68 GMERVASITSSYYKFAEAAILV 89
G+ + YY +A I V
Sbjct: 60 GLTSIRPYWRCYYSNTDAVIYV 81
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 41.3 bits (97), Expect = 5e-05
Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKE-YKV-DDRSIQMQ 62
K ++ V+ G GK+ LF R + + + ++ + YKV ++R +
Sbjct: 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT---SIT---DSSAIYKVNNNRGNSLT 57
Query: 63 LWDTGGMERV-ASITSSYYKFAEAAILVF-SLDNAASFHVLSQHLLEIVTYAENAK 116
L D G E + + + A A + V S +++ L +++ + K
Sbjct: 58 LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALK 113
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 40.7 bits (96), Expect = 7e-05
Identities = 17/82 (20%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
+ ++++ G GK+++ + +++ T+G FN E V+ ++I +WD G
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIG---FNVE-TVEYKNICFTVWDVG 81
Query: 68 GMERVASITSSYYKFAEAAILV 89
G +++ + Y++ + I V
Sbjct: 82 GQDKIRPLWRHYFQNTQGLIFV 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 8e-05
Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 68/196 (34%)
Query: 23 SLFRRYAY--DTFISSSSRK-STLGLDNFNKEYKVDDRSIQMQLW-----DTGGMERVAS 74
L++ Y I S+ S L + E KV + + + W +T + + S
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAE-KVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 75 ITSS-----------YYKFAE------------------------AAILVFSLDNAASFH 99
I S Y A+ A+ + D+ SF
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 100 VLSQHLLEIVTYAENAKIFLCGNNEQCH------NLISSTYKTSCKTGEGVEE-MFADIG 152
V + + ++ F G +C+ +L S + S + EGV M +
Sbjct: 294 VSVRKAITVL--------FFIG--VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS--- 340
Query: 153 RQLILSNRSRLELQTM 168
+SN ++ ++Q
Sbjct: 341 ----ISNLTQEQVQDY 352
Score = 38.5 bits (89), Expect = 8e-04
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 26/106 (24%)
Query: 59 IQMQLWDTG-GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQH---LLEIVTYAEN 114
Q Q G GM+ YK ++AA V+ N A H + +L+IV N
Sbjct: 1626 SQEQ----GMGMD--------LYKTSKAAQDVW---NRADNHFKDTYGFSILDIVI--NN 1668
Query: 115 AK---IFLCGNNEQC--HNLISSTYKTSCKTGEGVEEMFADIGRQL 155
I G + N + ++T E++F +I
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS 1714
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 40.3 bits (95), Expect = 9e-05
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E KVI+ G GK+++ +++ + + +S T+G N E ++ + + +WD G
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSP---TIG---SNVE-EIVINNTRFLMWDIG 68
Query: 68 GMERVASITSSYYKFAEAAILV 89
G E + S ++YY E I+V
Sbjct: 69 GQESLRSSWNTYYTNTEFVIVV 90
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 40.8 bits (95), Expect = 9e-05
Identities = 30/221 (13%), Positives = 55/221 (24%), Gaps = 82/221 (37%)
Query: 15 GEYGVGKSSL---FRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD--------------- 56
G+ G+GKS L F R + D F + S L +F +D
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHT--SVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92
Query: 57 RSIQMQLW-------DTGGMERVASITSSYYK---------------------------- 81
+M + D ++ Y K
Sbjct: 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFE 152
Query: 82 ---------FAEAAILVF--SLDNAASFHVLSQHLLEIVTYAENAK--IFLCGN-----N 123
+ +L S +F + + + K I +
Sbjct: 153 QKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV 212
Query: 124 EQC----HNLISSTYK-----TSCKTGEGVEEMFADIGRQL 155
E+ H S TS ++ V+ F+ + + +
Sbjct: 213 ERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 40.3 bits (95), Expect = 1e-04
Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++++ G GK+++ +++ + + S TLG FN + ++ R ++ +WD G
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVDTISP---TLG---FNIK-TLEHRGFKLNIWDVG 70
Query: 68 GMERVASITSSYYKFAEAAILV 89
G + + S +Y++ + I V
Sbjct: 71 GQKSLRSYWRNYFESTDGLIWV 92
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 39.5 bits (93), Expect = 1e-04
Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 27/159 (16%)
Query: 10 KVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTGGM 69
++++ G GK+++ + +++ T+G FN E V+ ++I +WD GG
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIP---TIG---FNVE-TVEYKNISFTVWDVGGQ 54
Query: 70 ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL--CGNN---- 123
+++ + Y++ + I V ++ + + L+ ++ E L N
Sbjct: 55 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114
Query: 124 --------------EQCHNLISSTYKTSCKTGEGVEEMF 148
+ T +G+G+ E
Sbjct: 115 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 39.5 bits (93), Expect = 2e-04
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
+ +V++ G GK+S+ R +++ T+G N E + ++I ++WD G
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLGDVVTTVP---TVG---VNLE-TLQYKNISFEVWDLG 74
Query: 68 GMERVASITSSYYKFAEAAILV 89
G V Y+ +A I V
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYV 96
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 39.1 bits (92), Expect = 2e-04
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E +++L G GK++L ++ A + + T G FN + V + ++ +WD G
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISHITP---TQG---FNIK-SVQSQGFKLNVWDIG 68
Query: 68 GMERVASITSSYYKFAEAAILV 89
G ++ SY++ + I V
Sbjct: 69 GQRKIRPYWRSYFENTDILIYV 90
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 39.2 bits (92), Expect = 2e-04
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E KVI+ G GK+++ +++ + + +S T+G N E ++ + + +WD G
Sbjct: 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSP---TIG---SNVE-EIVINNTRFLMWDIG 73
Query: 68 GMERVASITSSYYKFAEAAILV 89
G E + S ++YY E I+V
Sbjct: 74 GQESLRSSWNTYYTNTEFVIVV 95
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 37.5 bits (88), Expect = 7e-04
Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 26/159 (16%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E ++ L G GK++ A F T+G FN K+ ++ ++LWD G
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMI--PTVG---FNMR-KITKGNVTIKLWDIG 75
Query: 68 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL--CGNNEQ 125
G R S+ Y + A + + + L ++ + I + GN
Sbjct: 76 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 126 CHNLISST------------------YKTSCKTGEGVEE 146
+ Y SCK + ++
Sbjct: 136 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 36.6 bits (85), Expect = 0.002
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 13/111 (11%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
+ +I+ G GK+SL D+ + + +Y + L D
Sbjct: 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV---SQE-PLSAADYD----GSGVTLVDFP 99
Query: 68 GMERVASITSSYYKFAEAAI--LVF---SLDNAASFHVLSQHLLEIVTYAE 113
G ++ S Y K + L+F S + ++ L++I++ E
Sbjct: 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE 150
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 35.7 bits (83), Expect = 0.004
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
E V+ G GK+++ + S + T+G F+ E K S+ ++D
Sbjct: 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNI-LPTIG---FSIE-KFKSSSLSFTVFDMS 75
Query: 68 GMERVASITSSYYKFAEAAILV 89
G R ++ YYK +A I V
Sbjct: 76 GQGRYRNLWEHYYKEGQAIIFV 97
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 36.0 bits (83), Expect = 0.005
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 42 TLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89
T+G FN E V+ ++I +WD GG +++ + Y++ + I V
Sbjct: 196 TIG---FNVE-TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 35.4 bits (81), Expect = 0.007
Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 11/114 (9%)
Query: 11 VILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRS-IQMQLWDTGGM 69
V+L G GKSS+ + + TL L++ + + I + + + G
Sbjct: 2 VLLMGVRRCGKSSICK-----VVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQ 56
Query: 70 ERV---ASITSSYYKFAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIF 118
+ + +K A + V + + L+ + + I
Sbjct: 57 LNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIE 110
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 34.6 bits (80), Expect = 0.010
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 7/82 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
K++ G GK++L D TL E ++ + +D G
Sbjct: 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP---TLH---PTSE-ELTIAGMTFTTFDLG 77
Query: 68 GMERVASITSSYYKFAEAAILV 89
G + + +Y + +
Sbjct: 78 GHIQARRVWKNYLPAINGIVFL 99
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 34.7 bits (80), Expect = 0.010
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 13/117 (11%)
Query: 5 KVPEQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLW 64
K + +I+ G GK+SL D+ + + D + L
Sbjct: 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV---SQE---PLSA--ADYDGSGVTLV 60
Query: 65 DTGGMERVASITSSYYKFAEAAI--LVF---SLDNAASFHVLSQHLLEIVTYAENAK 116
D G ++ S Y K + L+F S + ++ L++I++ E++
Sbjct: 61 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC 117
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 34.5 bits (80), Expect = 0.011
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 8 EQKVILCGEYGVGKSSLFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDTG 67
K++ G GK++L D + T E ++ +I+ +D G
Sbjct: 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQP---TWH---PTSE-ELAIGNIKFTTFDLG 75
Query: 68 GMERVASITSSYYKFAEAAILV 89
G + + Y+ + +
Sbjct: 76 GHIQARRLWKDYFPEVNGIVFL 97
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 34.5 bits (79), Expect = 0.014
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 42 TLGLDNFNKEYKVDDRSIQMQLWDTGGMERVASITSSYYKFAEAAILV 89
T+G FN E V ++++ +WD GG +++ + YY + I V
Sbjct: 353 TVG---FNVE-TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 396
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 32.1 bits (73), Expect = 0.068
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSL----FRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD 56
+ + V++ G+ GVGKSS S + L +
Sbjct: 29 LKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE---QVVRVSPFQAEG--LRPVMVSRTMGG 83
Query: 57 RSIQMQLWDTGGMERVASITSSYYKFAEAAILVFSLD 93
+I + DT G+ + + + ++ ++D
Sbjct: 84 FTI--NIIDTPGLVEAGYVNHQALELIKGFLVNRTID 118
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 32.2 bits (73), Expect = 0.071
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 11/75 (14%)
Query: 1 MASIKVPEQKVILCGEYGVGKSSL----FRRYAYDTFISSSSRKSTLGLDNFNKEYKVDD 56
+ V +++ G+ GVGKSS S +
Sbjct: 32 LKQEDVNSLTILVMGKGGVGKSSTVNSIIGE---RVVSISPFQSEG--PRPVMVSRSRAG 86
Query: 57 RSIQMQLWDTGGMER 71
++ + DT G+
Sbjct: 87 FTL--NIIDTPGLIE 99
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 31.7 bits (71), Expect = 0.13
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 11 VILCGEYGVGKSS----LFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQL--W 64
+++ GE G+GKS+ LF Y S + + + + + +Q+ L
Sbjct: 11 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIV 70
Query: 65 DTGGME 70
DT G
Sbjct: 71 DTPGFG 76
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 31.1 bits (70), Expect = 0.14
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 7 PEQKVILCGEYGVGKSSLFRRYA-YDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
+ +++L G+ G GKS+ F S ++ KS + + + + D
Sbjct: 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSI-TKKCEKRSSSWKETEL--VVVD 84
Query: 66 TGGM 69
T G+
Sbjct: 85 TPGI 88
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 31.6 bits (71), Expect = 0.14
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 11 VILCGEYGVGKSS----LFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWDT 66
++ GE G+GKS+ LF ++ + + L + + + + +++ + T
Sbjct: 45 ILCVGETGLGKSTLMDTLFNTKFEGE--PATHTQPGVQLQSNTYDLQESNVRLKLTIVST 102
Query: 67 GG 68
G
Sbjct: 103 VG 104
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 31.3 bits (70), Expect = 0.17
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 11 VILCGEYGVGKSS----LFRRYAYDT---FISSSSRKSTLGLDNFNKEYKVDDRSIQMQL 63
+++ GE G+GKS+ LF Y ++ + T+ ++ E + +++ +
Sbjct: 21 LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80
Query: 64 WDTGGMERVASITSSY 79
DT G + +
Sbjct: 81 VDTPGYGDAINCRDCF 96
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 30.4 bits (68), Expect = 0.33
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 10 KVILCGEYGVGKSS----LFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
V + GE G GKSS L + +++ + + YK + + WD
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEE---GAAKTGVVEVTMERHPYKHPNIP-NVVFWD 126
Query: 66 TGGMERVASITSSYYKFAEAAILVFSL 92
G+ +Y + + F +
Sbjct: 127 LPGIGSTNFPPDTYLEKMKFYEYDFFI 153
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.7 bits (61), Expect = 1.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 10 KVILCGEYGVGKSSLFRRYA 29
K+I+ GE GVGK++L ++
Sbjct: 2 KIIITGEPGVGKTTLVKKIV 21
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 28.2 bits (62), Expect = 1.8
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 11 VILCGEYGVGKSS----LFRRYAYDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQL--W 64
+++ GE G+GKS+ LF Y S + + + + + +Q+ L
Sbjct: 34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIV 93
Query: 65 DTGGM 69
DT G
Sbjct: 94 DTPGF 98
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 28.1 bits (62), Expect = 2.4
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 2 ASIKVPE-QKVILCGEYGVGKSSLFR 26
+++ ++ +CG G GKS+L R
Sbjct: 454 TQLRLKRARRYGICGPNGCGKSTLMR 479
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 26.7 bits (59), Expect = 3.2
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 120 CGNNEQCHNLISSTYKTSCKTG 141
C ++ C N + S Y C+ G
Sbjct: 106 CDSSTVCFNTVGS-YSCRCRPG 126
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 27.1 bits (60), Expect = 3.6
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 7 PEQKVILCGEYGVGKSSLFRRYAYD---TFISSSSRKSTL 43
P ++L G G GKS L + A + TF S SS S L
Sbjct: 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS--SDL 120
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 26.6 bits (58), Expect = 4.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 10 KVILCGEYGVGKSSLFRRYA 29
V L G GVGK++L + +
Sbjct: 3 HVFLTGPPGVGKTTLIHKAS 22
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 26.6 bits (58), Expect = 5.4
Identities = 7/19 (36%), Positives = 7/19 (36%)
Query: 6 VPEQKVILCGEYGVGKSSL 24
V L G GKS L
Sbjct: 28 VAGTVGALVSPGGAGKSML 46
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 26.1 bits (58), Expect = 7.5
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 136 TSCKTGEGVEEMFADIGRQL 155
S KT EG +++ I + +
Sbjct: 203 LSLKTMEGFDKVLEFIEKSV 222
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 25.8 bits (56), Expect = 9.0
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 7 PEQKVILCGEYGVGKSSLFRRYA-YDTFISSSSRKSTLGLDNFNKEYKVDDRSIQMQLWD 65
+++IL G G GKS+ F S S + D + ++ D
Sbjct: 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVT-RACTTGSRRWDKCHV--EVVD 76
Query: 66 TGGM 69
T +
Sbjct: 77 TPDI 80
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 26.0 bits (58), Expect = 9.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 12 ILCGEYGVGKSSL 24
IL G GVGKSS+
Sbjct: 169 ILAGPSGVGKSSI 181
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 25.1 bits (55), Expect = 9.3
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 120 CGNNEQCHNLISSTYKTSCKTG 141
C + C + I S + C++G
Sbjct: 22 CCGHGTCIDGIGS-FSCDCRSG 42
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 26.1 bits (58), Expect = 9.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 11 VILCGEYGVGKSSL 24
I G+ GVGKSSL
Sbjct: 218 SIFAGQSGVGKSSL 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 25.6 bits (57), Expect = 10.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 12 ILCGEYGVGKSSL 24
+ G+ GVGKSSL
Sbjct: 177 VFAGQSGVGKSSL 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.377
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,712,686
Number of extensions: 146835
Number of successful extensions: 793
Number of sequences better than 10.0: 1
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 189
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)