BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17232
         (313 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HPC|X Chain X, Crystal Structure Of Snx5-Px Domain In P21 Space Group
          Length = 161

 Score =  202 bits (513), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 101/159 (63%), Positives = 114/159 (71%), Gaps = 1/159 (0%)

Query: 24  SENIDLN-DNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRF 82
           S ++DLN D  L +DI DALSE++KVKFTVHTK     F      V RQHE+FVWLHD  
Sbjct: 1   SVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTL 60

Query: 83  EENEAYAGYIIXXXXXXXDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKT 142
            E   YAG II       DFD  REK+QKLGEGEG+MTKEEF KMKQELEAEYLA FKKT
Sbjct: 61  TETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKT 120

Query: 143 VAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKN 181
           V+ HE+FL RL+ HPV   D  FHVFL+Y+QDLSVR KN
Sbjct: 121 VSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKN 159


>pdb|3HPB|A Chain A, Crystal Structure Of Snx5-Px Domain In P212121 Space Group
          Length = 161

 Score =  195 bits (496), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/159 (62%), Positives = 111/159 (69%), Gaps = 1/159 (0%)

Query: 24  SENIDLN-DNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRF 82
           S ++DLN D  L +DI DALSE++KVKFTVHTK     F      V RQHE+FVWLHD  
Sbjct: 1   SVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTL 60

Query: 83  EENEAYAGYIIXXXXXXXDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKT 142
            E   YAG II       DFD  REK QKLGEGEG+ TKEEF K KQELEAEYLA FKKT
Sbjct: 61  TETTDYAGLIIPPAPTKPDFDGPREKXQKLGEGEGSXTKEEFAKXKQELEAEYLAVFKKT 120

Query: 143 VAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKN 181
           V+ HE+FL RL+ HPV   D  FHVFL+Y+QDLSVR KN
Sbjct: 121 VSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKN 159


>pdb|3IQ2|A Chain A, Human Sorting Nexin 7, Phox Homology (Px) Domain
 pdb|3IQ2|B Chain B, Human Sorting Nexin 7, Phox Homology (Px) Domain
          Length = 138

 Score = 30.8 bits (68), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 20/101 (19%)

Query: 86  EAYAGYIIXXXXXXXDFDSS----REKLQ-------KLGEGEGTMT----KEEFI--KMK 128
           E +  Y I       +FDSS    R + Q       KL E   T+      E+FI   M 
Sbjct: 24  ETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMV 83

Query: 129 QELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFL 169
           +    +++ T +K  A+H+ FL R+A HP    +  F +FL
Sbjct: 84  ERFNDDFIETRRK--ALHK-FLNRIADHPTLTFNEDFKIFL 121


>pdb|2Z3S|A Chain A, Nmr Structure Of Agtx2-Mtx
          Length = 39

 Score = 28.9 bits (63), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 278 AMPPNVSCIGDYDVWRTTRMQTGIWNA 304
            +P NVSC G  D +   R QTG  NA
Sbjct: 1   GVPINVSCTGSKDCYAPCRKQTGCPNA 27


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,745,909
Number of Sequences: 62578
Number of extensions: 275347
Number of successful extensions: 739
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 736
Number of HSP's gapped (non-prelim): 9
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)