Query psy17232
Match_columns 313
No_of_seqs 217 out of 908
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 16:42:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1660|consensus 100.0 1.3E-58 2.9E-63 434.5 19.3 281 17-298 8-354 (399)
2 cd07292 PX_SNX6 The phosphoino 100.0 2.3E-50 5.1E-55 338.4 13.8 141 32-172 1-141 (141)
3 cd07291 PX_SNX5 The phosphoino 100.0 1.7E-49 3.6E-54 333.7 13.0 140 33-172 2-141 (141)
4 cd06892 PX_SNX5_like The phosp 100.0 1.6E-43 3.5E-48 300.0 11.6 140 33-172 2-141 (141)
5 cd07284 PX_SNX7 The phosphoino 100.0 1.9E-34 4.2E-39 238.8 9.7 112 34-172 1-116 (116)
6 cd07283 PX_SNX30 The phosphoin 100.0 3.8E-33 8.2E-38 231.1 9.2 111 34-171 1-115 (116)
7 cd07282 PX_SNX2 The phosphoino 100.0 2.2E-32 4.7E-37 229.0 10.7 120 34-172 1-124 (124)
8 cd06891 PX_Vps17p The phosphoi 100.0 2.7E-32 5.8E-37 231.9 9.4 113 30-172 26-140 (140)
9 cd07293 PX_SNX3 The phosphoino 100.0 4.8E-32 1E-36 226.6 9.2 117 33-172 1-121 (123)
10 cd06860 PX_SNX7_30_like The ph 100.0 7.4E-32 1.6E-36 223.2 10.2 111 34-171 1-115 (116)
11 cd07294 PX_SNX12 The phosphoin 100.0 9.1E-32 2E-36 227.4 9.8 118 32-172 2-123 (132)
12 cd07286 PX_SNX18 The phosphoin 100.0 3.9E-31 8.5E-36 221.8 9.0 101 34-172 1-107 (127)
13 cd06861 PX_Vps5p The phosphoin 100.0 1.6E-30 3.4E-35 213.9 10.6 108 34-172 1-112 (112)
14 cd06894 PX_SNX3_like The phosp 100.0 2.3E-30 4.9E-35 216.5 10.4 117 33-172 1-121 (123)
15 cd07281 PX_SNX1 The phosphoino 100.0 2.3E-30 5.1E-35 216.5 10.1 119 34-171 1-123 (124)
16 cd07285 PX_SNX9 The phosphoino 100.0 2.8E-30 6.1E-35 216.3 9.1 107 34-178 1-114 (126)
17 cd06863 PX_Atg24p The phosphoi 100.0 1.9E-29 4.1E-34 209.0 10.1 112 34-171 1-117 (118)
18 cd07295 PX_Grd19 The phosphoin 100.0 2.3E-29 4.9E-34 208.5 9.9 109 33-172 1-114 (116)
19 cd06865 PX_SNX_like The phosph 100.0 7.8E-29 1.7E-33 206.3 9.6 110 35-172 1-120 (120)
20 KOG2273|consensus 100.0 1.8E-27 3.9E-32 240.1 19.2 211 34-272 110-402 (503)
21 cd06864 PX_SNX4 The phosphoino 99.9 1.4E-27 2.9E-32 201.3 10.0 116 34-172 1-129 (129)
22 cd06898 PX_SNX10 The phosphoin 99.9 2.3E-27 5E-32 195.6 10.1 107 35-171 1-112 (113)
23 cd06859 PX_SNX1_2_like The pho 99.9 1.2E-26 2.7E-31 190.5 10.7 110 34-172 1-114 (114)
24 cd07288 PX_SNX15 The phosphoin 99.9 1.6E-26 3.4E-31 192.1 9.1 106 35-171 4-117 (118)
25 cd06862 PX_SNX9_18_like The ph 99.9 2.3E-26 4.9E-31 192.9 9.2 106 34-177 1-112 (125)
26 cd06868 PX_HS1BP3 The phosphoi 99.9 7.8E-26 1.7E-30 188.4 9.7 105 34-171 2-119 (120)
27 cd07287 PX_RPK118_like The pho 99.9 3.5E-25 7.6E-30 184.0 9.0 105 36-171 5-117 (118)
28 cd06867 PX_SNX41_42 The phosph 99.9 3.5E-25 7.7E-30 181.9 8.9 106 36-172 2-112 (112)
29 KOG2527|consensus 99.9 1.4E-25 3.1E-30 186.4 4.7 113 30-172 14-130 (144)
30 cd07301 PX_SNX21 The phosphoin 99.9 3.1E-24 6.6E-29 176.8 9.8 106 34-171 1-111 (112)
31 cd07280 PX_YPT35 The phosphoin 99.9 7.3E-24 1.6E-28 176.2 9.6 108 35-171 4-120 (120)
32 cd06866 PX_SNX8_Mvp1p_like The 99.9 1E-23 2.2E-28 171.8 9.9 94 40-171 8-104 (105)
33 cd06881 PX_SNX15_like The phos 99.9 9.6E-24 2.1E-28 175.0 9.2 107 34-171 3-116 (117)
34 cd06893 PX_SNX19 The phosphoin 99.9 2.9E-23 6.3E-28 175.6 8.4 112 35-171 5-131 (132)
35 cd07279 PX_SNX20_21_like The p 99.9 3.6E-22 7.8E-27 164.1 9.4 105 35-171 2-111 (112)
36 cd07300 PX_SNX20 The phosphoin 99.9 8.6E-22 1.9E-26 162.7 9.8 95 46-172 17-112 (114)
37 cd07276 PX_SNX16 The phosphoin 99.9 7.7E-22 1.7E-26 161.7 9.1 106 32-172 2-110 (110)
38 cd06877 PX_SNX14 The phosphoin 99.9 1.6E-21 3.5E-26 162.2 10.6 97 45-172 20-119 (119)
39 KOG2528|consensus 99.9 1.5E-21 3.2E-26 189.6 11.5 168 31-242 183-361 (490)
40 cd06872 PX_SNX19_like_plant Th 99.8 4.3E-21 9.2E-26 156.9 8.8 102 34-171 1-106 (107)
41 cd06886 PX_SNX27 The phosphoin 99.8 7.5E-21 1.6E-25 155.2 9.6 99 33-171 3-105 (106)
42 cd06873 PX_SNX13 The phosphoin 99.8 1.4E-20 3E-25 156.7 10.2 108 33-171 4-119 (120)
43 cd06897 PX_SNARE The phosphoin 99.8 9.7E-21 2.1E-25 154.0 8.9 104 34-171 1-107 (108)
44 cd06870 PX_CISK The phosphoino 99.8 4.6E-20 1E-24 150.9 9.1 93 44-172 17-109 (109)
45 cd06879 PX_UP1_plant The phosp 99.8 1.1E-19 2.3E-24 154.2 10.2 95 47-172 44-138 (138)
46 cd06871 PX_MONaKA The phosphoi 99.8 1.3E-19 2.9E-24 150.9 10.3 105 32-172 6-110 (120)
47 cd06876 PX_MDM1p The phosphoin 99.8 2.4E-19 5.3E-24 151.6 10.2 107 35-170 21-132 (133)
48 cd07662 BAR_SNX6 The Bin/Amphi 99.8 2E-19 4.4E-24 162.7 9.8 122 188-310 1-191 (218)
49 cd06869 PX_UP2_fungi The phosp 99.8 3.1E-19 6.6E-24 148.6 8.6 88 46-172 32-119 (119)
50 cd06875 PX_IRAS The phosphoino 99.8 7.3E-19 1.6E-23 145.6 10.1 104 32-172 2-105 (116)
51 cd06885 PX_SNX17_31 The phosph 99.8 5.3E-19 1.1E-23 143.8 7.9 86 46-171 17-102 (104)
52 cd06882 PX_p40phox The phospho 99.8 1.8E-18 3.9E-23 144.7 10.4 104 33-172 3-118 (123)
53 cd07666 BAR_SNX7 The Bin/Amphi 99.8 1.3E-18 2.8E-23 160.7 9.2 144 156-304 1-218 (243)
54 cd07663 BAR_SNX5 The Bin/Amphi 99.8 2.2E-18 4.7E-23 156.6 9.8 120 188-308 1-189 (218)
55 cd06093 PX_domain The Phox Hom 99.8 5.4E-18 1.2E-22 134.5 10.0 102 35-171 1-106 (106)
56 COG5391 Phox homology (PX) dom 99.7 2.8E-17 6E-22 166.3 16.0 108 30-163 127-244 (524)
57 cd07621 BAR_SNX5_6 The Bin/Amp 99.7 1.1E-17 2.4E-22 152.4 11.8 106 188-294 1-172 (219)
58 smart00312 PX PhoX homologous 99.7 7.2E-18 1.6E-22 134.9 8.0 91 47-170 14-105 (105)
59 cd06878 PX_SNX25 The phosphoin 99.7 2.5E-17 5.4E-22 138.6 10.3 108 33-171 8-126 (127)
60 PF00787 PX: PX domain; Inter 99.7 1.3E-17 2.7E-22 133.9 7.3 111 31-172 1-113 (113)
61 cd07277 PX_RUN The phosphoinos 99.7 3E-17 6.5E-22 136.5 8.9 90 46-172 17-106 (118)
62 cd06880 PX_SNX22 The phosphoin 99.7 5.6E-17 1.2E-21 133.1 9.6 85 46-172 18-102 (110)
63 cd07667 BAR_SNX30 The Bin/Amph 99.7 5.1E-16 1.1E-20 143.0 10.5 137 156-297 1-209 (240)
64 cd06883 PX_PI3K_C2 The phospho 99.6 7.5E-16 1.6E-20 126.3 9.2 103 36-171 2-108 (109)
65 cd06874 PX_KIF16B_SNX23 The ph 99.6 9.9E-15 2.1E-19 122.8 10.0 96 34-165 1-101 (127)
66 cd06884 PX_PI3K_C2_68D The pho 99.5 6.3E-14 1.4E-18 115.4 9.8 103 35-170 3-109 (111)
67 cd06890 PX_Bem1p The phosphoin 99.5 8E-14 1.7E-18 114.8 10.1 101 35-171 2-111 (112)
68 cd06895 PX_PLD The phosphoinos 99.5 9.2E-14 2E-18 118.8 9.6 102 33-171 3-139 (140)
69 cd06887 PX_p47phox The phospho 99.4 8E-13 1.7E-17 109.9 10.1 101 35-172 3-116 (118)
70 cd07630 BAR_SNX_like The Bin/A 99.4 1.6E-12 3.4E-17 117.2 9.8 85 208-294 1-153 (198)
71 cd06888 PX_FISH The phosphoino 99.4 6.1E-12 1.3E-16 104.8 10.5 103 35-171 3-118 (119)
72 cd07664 BAR_SNX2 The Bin/Amphi 99.3 2.1E-11 4.5E-16 112.6 11.4 103 190-294 3-187 (234)
73 cd07624 BAR_SNX7_30 The Bin/Am 99.2 7E-11 1.5E-15 106.5 10.8 95 204-298 7-170 (200)
74 cd07623 BAR_SNX1_2 The Bin/Amp 99.2 1.9E-10 4.2E-15 105.4 12.0 92 203-294 4-177 (224)
75 PF09325 Vps5: Vps5 C terminal 99.2 2E-10 4.3E-15 104.6 12.0 83 188-272 3-150 (236)
76 cd07296 PX_PLD1 The phosphoino 99.2 1.6E-10 3.4E-15 98.0 9.7 116 34-171 4-134 (135)
77 cd07290 PX_PI3K_C2_beta The ph 99.1 4E-10 8.7E-15 92.5 9.5 92 47-171 16-108 (109)
78 cd07665 BAR_SNX1 The Bin/Amphi 99.1 4.9E-10 1.1E-14 103.4 10.1 71 202-272 13-148 (234)
79 cd07289 PX_PI3K_C2_alpha The p 99.1 5.8E-10 1.3E-14 91.5 8.8 102 36-170 2-107 (109)
80 cd07627 BAR_Vps5p The Bin/Amph 99.0 1.7E-09 3.7E-14 98.5 11.4 87 208-294 1-171 (216)
81 cd07622 BAR_SNX4 The Bin/Amphi 98.9 2.3E-08 5.1E-13 90.4 11.6 94 204-297 7-168 (201)
82 cd07628 BAR_Atg24p The Bin/Amp 98.7 8.7E-08 1.9E-12 85.5 10.8 86 208-298 1-155 (185)
83 cd06889 PX_NoxO1 The phosphoin 98.6 2.3E-07 4.9E-12 77.6 9.9 104 35-171 7-120 (121)
84 cd07297 PX_PLD2 The phosphoino 98.6 2.5E-07 5.4E-12 77.5 8.1 115 33-171 3-129 (130)
85 cd07596 BAR_SNX The Bin/Amphip 98.3 5.2E-06 1.1E-10 73.9 11.1 65 208-272 1-132 (218)
86 cd06896 PX_PI3K_C2_gamma The p 98.3 3.6E-06 7.9E-11 67.6 7.7 98 36-171 2-100 (101)
87 KOG1259|consensus 98.2 2E-06 4.3E-11 82.3 6.5 98 37-172 17-115 (490)
88 KOG3784|consensus 98.2 3E-06 6.4E-11 82.7 5.8 87 46-172 16-102 (407)
89 cd07629 BAR_Atg20p The Bin/Amp 98.0 6.4E-05 1.4E-09 67.3 10.1 88 208-302 1-160 (187)
90 cd07625 BAR_Vps17p The Bin/Amp 97.2 0.0025 5.5E-08 59.0 10.1 68 205-272 12-144 (230)
91 cd07298 PX_RICS The phosphoino 97.1 0.0035 7.5E-08 51.6 8.7 66 27-101 2-77 (115)
92 KOG2101|consensus 97.0 0.0014 3.1E-08 63.9 6.2 96 46-166 134-232 (362)
93 cd07278 PX_RICS_like The phosp 96.3 0.037 7.9E-07 45.5 9.2 66 27-100 2-75 (114)
94 cd07299 PX_TCGAP The phosphoin 96.0 0.046 1E-06 44.7 8.2 48 47-100 25-74 (113)
95 KOG4773|consensus 95.7 0.016 3.5E-07 56.3 4.9 103 33-171 21-136 (386)
96 cd07598 BAR_FAM92 The Bin/Amph 94.7 0.28 6.1E-06 44.9 10.0 33 210-242 3-35 (211)
97 cd07591 BAR_Rvs161p The Bin/Am 93.3 0.94 2E-05 41.7 10.6 52 243-294 109-165 (224)
98 cd07612 BAR_Bin2 The Bin/Amphi 92.9 1.5 3.2E-05 40.3 11.1 52 243-294 104-160 (211)
99 cd07588 BAR_Amphiphysin The Bi 92.9 1.6 3.5E-05 39.9 11.3 53 243-295 104-161 (211)
100 cd07590 BAR_Bin3 The Bin/Amphi 91.9 2.2 4.8E-05 39.5 11.0 53 243-295 108-167 (225)
101 cd07599 BAR_Rvs167p The Bin/Am 91.6 2.2 4.7E-05 38.7 10.6 52 243-294 110-170 (216)
102 PF03114 BAR: BAR domain; Int 91.0 3.5 7.6E-05 36.1 11.1 50 243-294 131-182 (229)
103 cd07611 BAR_Amphiphysin_I_II T 90.9 3.5 7.6E-05 37.8 11.1 52 243-294 104-160 (211)
104 cd07626 BAR_SNX9_like The Bin/ 86.8 8.5 0.00019 34.9 10.6 53 243-295 108-165 (199)
105 KOG0905|consensus 86.7 2.2 4.7E-05 47.9 7.7 107 31-171 1373-1484(1639)
106 cd07589 BAR_DNMBP The Bin/Amph 86.6 6.5 0.00014 35.3 9.7 45 243-294 102-147 (195)
107 KOG3771|consensus 84.4 6.2 0.00013 40.1 9.2 52 243-294 122-178 (460)
108 cd07597 BAR_SNX8 The Bin/Amphi 82.1 7 0.00015 36.4 8.1 35 208-242 19-53 (246)
109 smart00721 BAR BAR domain. 80.1 23 0.0005 31.6 10.6 52 243-294 134-191 (239)
110 cd07307 BAR The Bin/Amphiphysi 69.3 66 0.0014 26.8 10.7 51 243-293 94-148 (194)
111 COG5391 Phox homology (PX) dom 55.2 14 0.00031 38.4 4.0 112 30-172 21-134 (524)
112 PF04012 PspA_IM30: PspA/IM30 51.3 1.3E+02 0.0029 27.0 9.3 32 210-242 23-54 (221)
113 PF08687 ASD2: Apx/Shroom doma 42.2 3.1E+02 0.0067 26.1 11.4 87 210-296 136-236 (264)
114 cd07646 I-BAR_IMD_IRSp53 Inver 41.5 2.4E+02 0.0052 26.4 9.3 115 162-276 21-140 (232)
115 PF09425 CCT_2: Divergent CCT 40.5 21 0.00045 22.2 1.6 11 142-152 4-14 (27)
116 cd07648 F-BAR_FCHO The F-BAR ( 39.7 2.6E+02 0.0056 25.8 9.6 36 255-290 128-167 (261)
117 cd07595 BAR_RhoGAP_Rich-like T 39.2 3.2E+02 0.007 25.4 11.9 83 209-291 75-183 (244)
118 PF00140 Sigma70_r1_2: Sigma-7 36.9 15 0.00034 24.0 0.6 21 145-165 3-23 (37)
119 PF10456 BAR_3_WASP_bdg: WASP- 35.8 1.4E+02 0.003 27.9 7.0 61 178-242 7-72 (237)
120 COG1842 PspA Phage shock prote 32.1 4.1E+02 0.0089 24.5 9.9 33 209-242 23-55 (225)
121 TIGR02977 phageshock_pspA phag 31.6 2.3E+02 0.0051 25.6 7.7 28 214-241 27-54 (219)
122 PF04380 BMFP: Membrane fusoge 31.1 2.4E+02 0.0052 21.5 8.8 25 208-232 3-27 (79)
123 cd06555 ASCH_PF0470_like ASC-1 28.5 1.7E+02 0.0038 24.0 5.7 52 30-84 16-71 (109)
124 PLN02866 phospholipase D 26.4 59 0.0013 36.6 3.2 32 141-172 140-171 (1068)
125 cd07651 F-BAR_PombeCdc15_like 25.3 5.1E+02 0.011 23.4 9.1 54 214-271 89-142 (236)
126 PF04297 UPF0122: Putative hel 24.9 2.3E+02 0.0051 23.0 5.7 44 243-286 48-91 (101)
127 PF03962 Mnd1: Mnd1 family; I 23.3 4.5E+02 0.0097 23.4 7.8 75 213-292 71-154 (188)
128 PRK10698 phage shock protein P 22.8 5.9E+02 0.013 23.2 8.9 29 214-242 27-55 (222)
129 KOG1853|consensus 22.2 4.4E+02 0.0096 25.2 7.7 24 243-269 104-127 (333)
130 PRK14487 cbb3-type cytochrome 21.6 4.6E+02 0.01 24.3 7.6 59 68-128 110-174 (217)
No 1
>KOG1660|consensus
Probab=100.00 E-value=1.3e-58 Score=434.51 Aligned_cols=281 Identities=62% Similarity=0.931 Sum_probs=269.3
Q ss_pred CCCCCCCCcccCC-CCCceEEEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCC
Q psy17232 17 SGKKSARSENIDL-NDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPP 95 (313)
Q Consensus 17 ~~~~~~~~~~~~l-~~~~l~V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPP 95 (313)
..+......+|++ ++.++.|.|+|...+.+.|.|+|+|+|++|.|. ++++|.|.+.+|+|||..+..+++|.|+||||
T Consensus 8 ~~~~~~~~~~V~~~g~~s~~~eis~a~se~~kvK~tv~t~t~lp~~~-~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp 86 (399)
T KOG1660|consen 8 QDHSSEVKAGVPTGGLFSLLVEISDALSEIGKVKFTVHTRTTLPLFM-PEFSVVRQHEEFVWLHDTIEENEDYAGVIIPP 86 (399)
T ss_pred hhcccccccCCCcCCccceeeeechhhhhcccceeeEEEeeeccCCC-CccceeeeecceeeeeehhhhccCcCceecCC
Confidence 3455667778888 889999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CCCCCCCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccccccc
Q psy17232 96 APPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDL 175 (313)
Q Consensus 96 lP~K~~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~~el 175 (313)
.|+++.|.++++|+|++|+|.+.||+|||.+|++.++++||+.++|..+|+|.||+||+.||+|+.|..|++||++++++
T Consensus 87 ~p~~p~fda~reklQkLGeGe~~mTkEEf~KmK~elEaeyLA~fKKTvamhEvfl~RlaahPvlr~d~nf~vflEy~qdL 166 (399)
T KOG1660|consen 87 APPRPDFDASREKLQKLGEGEGWMTKEEFLKMKQELEAEYLARFKKTVAMHEVFLRRLAAHPVLRLDQNFSVFLEYDQDL 166 (399)
T ss_pred CCCCCCCCCChHHHHHhcCCcccccHHHHHHHHHHhhhHHHHHHHHhhccHHHHHHHHhcCCeeecccchhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchhhhhhhhhHhhhhcccchhhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q psy17232 176 SVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK------------- 242 (313)
Q Consensus 176 ~~~~k~~~~~~~~~l~~~~~~~~~~~~s~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k------------- 242 (313)
++++||+++..||||+++.++++.+..+.+++++|+||+..+.|+..|+.++++.+..+++|+..|+
T Consensus 167 svr~KNkkE~~~~f~k~~~kSAdeillSg~lkdVddFfe~ek~fl~ey~~~ikdas~kadKmt~~hK~~~ddy~~i~~~~ 246 (399)
T KOG1660|consen 167 SVRGKNKKESFGGFLKRFVKSADEILLSGKLKDVDDFFETEKNFLKEYHFRIKDASLKADKLTRAHKSVGDDYDQIGNRL 246 (399)
T ss_pred cccccchhhhhhHHHHHHhhhhhheeeecceeehhHHHHhhhHHHHHHhhHHhhhccchHHhhhhcccccccHHHHHHHH
Confidence 9999999999999999999999999886679999999999999999999999999999999999988
Q ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17232 243 ---------------------------------------------------DAAKRLLYRRLRCLADYENANRNLERART 271 (313)
Q Consensus 243 ---------------------------------------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~ 271 (313)
.++|++|++|.+|+++||+||++|+|||+
T Consensus 247 ~~lg~ed~~~v~~~~l~~~e~f~~~~k~e~Rvs~dedlkL~d~l~yy~r~~~aakdllyRr~Rcl~~ye~ank~l~kar~ 326 (399)
T KOG1660|consen 247 NRLGEEDAANVKKFQLKEAEYFEEESKVERRVSSDEDLKLGDTLRYYDRDSCAAKDLLYRRERCLADYEAANKNLEKARA 326 (399)
T ss_pred HHhhhhhhcccceeeecchhHHHHHHhHhhhhchHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 89999999999999999999999999999
Q ss_pred chhhhhcCCchhh-hhhhHHHHHHHHhh
Q psy17232 272 KNKDVHAMPPNVS-CIGDYDVWRTTRMQ 298 (313)
Q Consensus 272 ~~k~v~~~e~~~~-~~~~~e~~~~~~~~ 298 (313)
++|||.++|+.++ ||++||.+....++
T Consensus 327 knkdv~~ae~~q~e~c~kfe~~s~~~k~ 354 (399)
T KOG1660|consen 327 KNKDVHAAEAAQQEACQKFESISESAKE 354 (399)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999765554
No 2
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=100.00 E-value=2.3e-50 Score=338.45 Aligned_cols=141 Identities=76% Similarity=1.161 Sum_probs=137.8
Q ss_pred CceEEEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhh
Q psy17232 32 NVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQK 111 (313)
Q Consensus 32 ~~l~V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~ 111 (313)
+.|+|+|+||.++||+|+|+|+|+|++|.|+.++++|+||||||+|||++|.+|+.|||+||||+|+|+.++++++|+++
T Consensus 1 ~~l~v~isD~~~~~d~V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~~k~~k 80 (141)
T cd07292 1 AALQVDISDALSERDKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQK 80 (141)
T ss_pred CceEEEcccccccCCceEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchHHHHHh
Confidence 36899999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 112 LGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 112 ~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
+|+|+++|++++|.+|+++|++|||++|+||+++||+||+|||+||+|++|.+|+.||+++
T Consensus 81 lg~~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~~ 141 (141)
T cd07292 81 LGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYN 141 (141)
T ss_pred hccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcchhheeccC
Confidence 9999999999999999999999999999999999999999999999999999999999974
No 3
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=100.00 E-value=1.7e-49 Score=333.72 Aligned_cols=140 Identities=66% Similarity=1.067 Sum_probs=137.0
Q ss_pred ceEEEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhc
Q psy17232 33 VLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKL 112 (313)
Q Consensus 33 ~l~V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~ 112 (313)
.++|+|+||.++||||+|+|+|+|++|.|.+++++|+|||+||+|||++|.+++.|||+||||+|+|++++++++|++++
T Consensus 2 ~l~i~vsD~~~~~d~V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~k~~kl 81 (141)
T cd07291 2 SLQIDIPDALSERDKVKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPREKMQKL 81 (141)
T ss_pred ccEEEeccccccCCCEEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHHhhhhc
Confidence 58999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 113 GEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 113 ~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
|+|.++|++++|.+|++.+++|||++++||++|||+||+||++||+|++|++|+.||+++
T Consensus 82 ~~~~~~~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~~ 141 (141)
T cd07291 82 GEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEYD 141 (141)
T ss_pred ccCcccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCeeccCcchhhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999974
No 4
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=100.00 E-value=1.6e-43 Score=299.96 Aligned_cols=140 Identities=74% Similarity=1.105 Sum_probs=136.1
Q ss_pred ceEEEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhc
Q psy17232 33 VLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKL 112 (313)
Q Consensus 33 ~l~V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~ 112 (313)
+++|.|+|+.+++|+|+|+|+|+|++|.|+.++++|+|||+||+|||++|.+++.|||+||||+|+|+.++.++.|++++
T Consensus 2 ~~~~~i~da~~~~~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~k~~kl 81 (141)
T cd06892 2 SLQVDISDALSERDKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREKLQKL 81 (141)
T ss_pred ceeeecccccccCCeEEEEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccceeeec
Confidence 68999999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 113 GEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 113 ~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
|+|+++|++++|.+|++.|+.+|+++|++..+++|+||+||+.||+|+++.+|+.||+.+
T Consensus 82 g~~d~~~~~ef~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~~ 141 (141)
T cd06892 82 GEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFLEYE 141 (141)
T ss_pred ccCccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCeeecCHhHHhhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999863
No 5
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=100.00 E-value=1.9e-34 Score=238.81 Aligned_cols=112 Identities=25% Similarity=0.508 Sum_probs=100.5
Q ss_pred eEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHH
Q psy17232 34 LIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKL 109 (313)
Q Consensus 34 l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~ 109 (313)
++|.|+||.++++ |++|+|+|+|++|.|..++++|+||||||+|||+.|..+ |||++|||||+|+.+..
T Consensus 1 ~~i~V~dP~~~~~~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~--~p~~~iPplP~K~~~~~----- 73 (116)
T cd07284 1 IFITVDEPESHVTAIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEA--HPTLIIPPLPEKFVMKG----- 73 (116)
T ss_pred CEEEEeCcceeecCCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHH--CCCceeCCCCCcchhhh-----
Confidence 5799999998874 999999999999999999999999999999999999996 99999999999986521
Q ss_pred hhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 110 QKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 110 ~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
+.++|+++||+ +|+++||.||++|+.||+|+.+++|+.||+.+
T Consensus 74 -----------------~~~~~~~~fie---~Rr~~Le~FL~ri~~hp~L~~s~~~~~FL~~~ 116 (116)
T cd07284 74 -----------------MVERFNEDFIE---TRRKALHKFLNRIADHPTLTFNEDFKIFLTAQ 116 (116)
T ss_pred -----------------ccccCCHHHHH---HHHHHHHHHHHHHHcCcccccChHHHHhhcCC
Confidence 11346789999 67779999999999999999999999999863
No 6
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=100.00 E-value=3.8e-33 Score=231.07 Aligned_cols=111 Identities=27% Similarity=0.499 Sum_probs=99.8
Q ss_pred eEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHH
Q psy17232 34 LIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKL 109 (313)
Q Consensus 34 l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~ 109 (313)
+.|.|+||.++++ ||+|+|+|+|++|.|...++.|+||||||+|||+.|... |||++|||||+|+.+..
T Consensus 1 ~~i~V~dP~~~~~~~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~--~p~~~iPpLP~K~~~~~----- 73 (116)
T cd07283 1 LFVTVDDPKKHVCTMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEES--QPTHLIPPLPEKFVVKG----- 73 (116)
T ss_pred CEEEEcCcceecCCCcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHh--CCCcccCCCCCcccccc-----
Confidence 5799999999964 999999999999999999999999999999999999995 99999999999987521
Q ss_pred hhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 110 QKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 110 ~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
. .++|+++||| +||.+||.||++|+.||.|+.+++|+.||+.
T Consensus 74 --------~---------~~~~~~~fie---~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt~ 115 (116)
T cd07283 74 --------V---------VDRFSEEFVE---TRRKALDKFLKRIADHPVLSFNEHFNVFLTA 115 (116)
T ss_pred --------c---------ccCCCHHHHH---HHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 0 1235678999 6788999999999999999999999999986
No 7
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=99.98 E-value=2.2e-32 Score=229.02 Aligned_cols=120 Identities=26% Similarity=0.438 Sum_probs=102.4
Q ss_pred eEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHH
Q psy17232 34 LIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKL 109 (313)
Q Consensus 34 l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~ 109 (313)
|+|+|+||++.++ |++|+|+|+|++|.|...++.|+|||+||+|||+.|.+++.++|++|||+|+|+.++....+
T Consensus 1 ~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~- 79 (124)
T cd07282 1 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVK- 79 (124)
T ss_pred CEEEEeCCeEecCCccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCccccccccc-
Confidence 5899999999974 89999999999999999999999999999999999999755569999999999987532111
Q ss_pred hhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 110 QKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 110 ~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
.|.+ +.++++||+ +||.+||.||++|++||.|++|++|+.||++.
T Consensus 80 ----~~~~-----------~~~~~~fie---~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 124 (124)
T cd07282 80 ----VGKE-----------DSSSTEFVE---KRRAALERYLQRTVKHPTLLQDPDLRQFLESS 124 (124)
T ss_pred ----cccc-----------cccCHHHHH---HHHHHHHHHHHHHhcCcccccChHHHHhhcCC
Confidence 1111 235678998 68889999999999999999999999999863
No 8
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.97 E-value=2.7e-32 Score=231.88 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=100.7
Q ss_pred CCCceEEEeecceeeCC-cEEEEEEeeecccccccCce-EEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHH
Q psy17232 30 NDNVLIVDISDALSEKE-KVKFTVHTKKKEVYFLYRTV-IVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSRE 107 (313)
Q Consensus 30 ~~~~l~V~Vsdp~k~g~-yv~Y~V~tkt~l~~f~~~~~-~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~ 107 (313)
++..|+|+|+||++.|+ |+.|+|.++||+|.|..+++ +|+||||||+|||++|..+ |||+||||||+|+++ +
T Consensus 26 ~~~~l~i~Vtd~ek~G~~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~--~~~~iVPplP~k~~~-~--- 99 (140)
T cd06891 26 PKYFLRVRVTGIERNKSKDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGA--NPETFVPALPLPSTS-Y--- 99 (140)
T ss_pred CCceEEEEEeCceecCCCCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHH--CCCcEeCCCCCcccc-C---
Confidence 46789999999999995 89999999999999999998 7999999999999999997 999999999999864 1
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 108 KLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 108 K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
+ .++.||++ +|+++||+||+||++||+|..|++|+.||+++
T Consensus 100 -----~----------------~~~~E~~~---~rr~~LqrfL~RV~~hP~L~~d~~l~~FLEsd 140 (140)
T cd06891 100 -----G----------------SNNEEDAR---KLKANLQRWFNRVCSDPILIRDEELRFFIESD 140 (140)
T ss_pred -----C----------------CCCHHHHH---HHHHHHHHHHHHHhCChhhccCHHHHHHhccC
Confidence 1 12346776 78899999999999999999999999999874
No 9
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=99.97 E-value=4.8e-32 Score=226.62 Aligned_cols=117 Identities=23% Similarity=0.455 Sum_probs=100.7
Q ss_pred ceEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHH
Q psy17232 33 VLIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREK 108 (313)
Q Consensus 33 ~l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K 108 (313)
+|+|.|+||.+.++ |++|.|+|+|+.|.|...+++|+||||||+|||+.|.. +||++|||||+|+.+..
T Consensus 1 ~~~i~v~dP~~~~~~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~---~~~~~iPpLP~K~~~~~---- 73 (123)
T cd07293 1 FLEIDVTNPQTVGVGRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELER---ESKVVVPPLPGKALFRQ---- 73 (123)
T ss_pred CeEEEecCCeEecCCCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHh---ccCCccCCCCCCchhhh----
Confidence 47999999999875 89999999999999999999999999999999999986 78999999999998642
Q ss_pred HhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 109 LQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 109 ~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
+...+ +.+ +++++||| +||.+||.||++|++||+|++|+.|+.||+.+
T Consensus 74 ~~~~~-~~~------------~~~~~fie---~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~~ 121 (123)
T cd07293 74 LPFRG-DDG------------IFDDSFIE---ERKQGLEQFLNKVAGHPLAQNERCLHMFLQDE 121 (123)
T ss_pred ccccc-ccC------------CCCHHHHH---HHHHHHHHHHHHHHcCcccccCcHHHhhcCCC
Confidence 11001 112 34678998 67889999999999999999999999999975
No 10
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.97 E-value=7.4e-32 Score=223.19 Aligned_cols=111 Identities=25% Similarity=0.519 Sum_probs=99.4
Q ss_pred eEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHH
Q psy17232 34 LIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKL 109 (313)
Q Consensus 34 l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~ 109 (313)
++|+|+||.++|+ |++|+|+|+|+.+.|....+.|+|||+||+|||++|... |||++|||||+|+.+..
T Consensus 1 ~~v~V~dP~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~--~p~~~iPpLP~K~~~~~----- 73 (116)
T cd06860 1 LFITVDNPEKHVTTLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEES--HPTHIIPPLPEKHSVKG----- 73 (116)
T ss_pred CEEEEcCCeeccCCCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHH--CCCCccCCCCCcchhhh-----
Confidence 5799999999964 999999999999999999999999999999999999995 99999999999987421
Q ss_pred hhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 110 QKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 110 ~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
..++|+++||+ +||.+||.||++|+.||.|++|++|+.||+.
T Consensus 74 -----------------~~~~~~~~fie---~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt~ 115 (116)
T cd06860 74 -----------------LLDRFSPEFVA---TRMRALHKFLNRIVEHPVLSFNEHLKVFLTA 115 (116)
T ss_pred -----------------hcccCCHHHHH---HHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 01345678999 6778999999999999999999999999986
No 11
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=99.97 E-value=9.1e-32 Score=227.39 Aligned_cols=118 Identities=22% Similarity=0.382 Sum_probs=102.2
Q ss_pred CceEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHH
Q psy17232 32 NVLIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSRE 107 (313)
Q Consensus 32 ~~l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~ 107 (313)
+.|+|.|+||++.|+ |++|+|+|+|++|.|...+++|+||||||+|||+.|.. +||++|||||+|+.+...
T Consensus 2 ~~~~i~v~dP~~~~~g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~---~~g~~iPpLP~K~~~~~~-- 76 (132)
T cd07294 2 NFLEIDIFNPQTVGVGRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELER---DSKIVVPPLPGKALKRQL-- 76 (132)
T ss_pred ceEEEEeeCCeEecCCCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHH---cCCCccCCCCCCceeccc--
Confidence 579999999999987 89999999999999999999999999999999999986 689999999999974210
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 108 KLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 108 K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
+ |.+...+|+++||+ +|+.+||.||++|++||.|++++.|+.||+.+
T Consensus 77 -----~----------~~~~~~~~~~~fie---~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~ 123 (132)
T cd07294 77 -----P----------FRGDEGIFEESFIE---ERRQGLEQFINKIAGHPLAQNERCLHMFLQDE 123 (132)
T ss_pred -----c----------ccccccCCCHHHHH---HHHHHHHHHHHHHHcCcccccChHHHHhcCCC
Confidence 0 00111235678999 67889999999999999999999999999997
No 12
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=99.97 E-value=3.9e-31 Score=221.81 Aligned_cols=101 Identities=19% Similarity=0.391 Sum_probs=91.1
Q ss_pred eEEEeecceeeC------CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHH
Q psy17232 34 LIVDISDALSEK------EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSRE 107 (313)
Q Consensus 34 l~V~Vsdp~k~g------~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~ 107 (313)
+.|+|+||.|+| .||+|+|+|.+ .++.|+||||||+|||+.|..+ |||++|||||+|..++
T Consensus 1 ~~~~v~dp~k~~~~~G~~~Yv~Y~I~~~~-------~~~~V~RRYsDF~~L~~~L~~~--~p~~~IPpLP~K~~~g---- 67 (127)
T cd07286 1 FQCTIDDPTKQTKFKGMKSYISYKLVPSH-------TGLQVHRRYKHFDWLYARLAEK--FPVISVPHIPEKQATG---- 67 (127)
T ss_pred CeEEeCCCcccCCCCCCcCEEEEEEEEec-------CceEEECCCcHHHHHHHHHHHH--CCCcEeCCCcCCCcCC----
Confidence 579999999997 39999999864 4689999999999999999996 9999999999998752
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 108 KLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 108 K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
+|+++||+ +|+++||.||++|+.||.|+.++.|+.||+.+
T Consensus 68 ----------------------~f~~~FIe---~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~~~ 107 (127)
T cd07286 68 ----------------------RFEEDFIS---KRRKGLIWWMDHMCSHPVLARCDAFQHFLTCP 107 (127)
T ss_pred ----------------------CCCHHHHH---HHHHHHHHHHHHHHcCcccccChHHHHHhcCC
Confidence 24678999 78889999999999999999999999999986
No 13
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.97 E-value=1.6e-30 Score=213.92 Aligned_cols=108 Identities=25% Similarity=0.541 Sum_probs=98.5
Q ss_pred eEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHH
Q psy17232 34 LIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKL 109 (313)
Q Consensus 34 l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~ 109 (313)
+.|+|+||.++|+ |++|+|+|+++.+.|....+.|+|||+||+|||++|... |||++|||+|+|+.++
T Consensus 1 ~~i~V~dp~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~--~~~~~iP~lP~K~~~~------ 72 (112)
T cd06861 1 FEITVGDPHKVGDLTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNN--HPGVIVPPPPEKQSVG------ 72 (112)
T ss_pred CEEEEcCcceecCCccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHH--CCCCccCCCCCccccc------
Confidence 5799999999975 899999999999999999999999999999999999995 9999999999998753
Q ss_pred hhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 110 QKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 110 ~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
+ |+++||+ +||.+||.||++|+.||+|++++.|+.||+++
T Consensus 73 --------~------------~~~~fie---~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06861 73 --------R------------FDDNFVE---QRRAALEKMLRKIANHPVLQKDPDFRLFLESE 112 (112)
T ss_pred --------C------------CCHHHHH---HHHHHHHHHHHHHHCCcccccCcHHHHhcCCC
Confidence 2 3467888 67889999999999999999999999999874
No 14
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=99.97 E-value=2.3e-30 Score=216.55 Aligned_cols=117 Identities=21% Similarity=0.379 Sum_probs=100.3
Q ss_pred ceEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHH
Q psy17232 33 VLIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREK 108 (313)
Q Consensus 33 ~l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K 108 (313)
+|+|+|+||.++++ |++|.|+++|++|.|...++.|+||||||+|||+.|.. .||++|||||+|+.+...
T Consensus 1 ~~~i~V~dP~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~---~~~~~iPpLP~K~~~~~~--- 74 (123)
T cd06894 1 FLEIDVVNPQTHGVGKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELER---DSKIVVPPLPGKALKRQL--- 74 (123)
T ss_pred CeEEEEeCCcEecCCCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHH---cCCCccCCCCCCceeccc---
Confidence 48999999999875 89999999999999999999999999999999999986 599999999999975310
Q ss_pred HhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 109 LQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 109 ~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
..+.. .+.++++||| +|+.+|+.||++|+.||.|++|+.|+.||+.+
T Consensus 75 --~~~~~------------~~~~~~~fie---~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~ 121 (123)
T cd06894 75 --PFRGD------------DGIFEEEFIE---ERRKGLETFINKVAGHPLAQNEKCLHMFLQEE 121 (123)
T ss_pred --ccccc------------cCCCCHHHHH---HHHHHHHHHHHHHHcChhhccCCHHHHhcCCC
Confidence 00000 1235678999 67889999999999999999999999999975
No 15
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.97 E-value=2.3e-30 Score=216.53 Aligned_cols=119 Identities=26% Similarity=0.460 Sum_probs=102.7
Q ss_pred eEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHH
Q psy17232 34 LIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKL 109 (313)
Q Consensus 34 l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~ 109 (313)
|+|.|+||.+.|+ ||+|.|+|+|+.+.|....++|+||||||+|||++|...+.++|++|||+|+|..+++...++
T Consensus 1 ~~i~V~~p~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~~ 80 (124)
T cd07281 1 LKVSITDPEKIGDGMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKV 80 (124)
T ss_pred CEEEEcCCeEeeCCcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhhc
Confidence 6899999999975 899999999999999999999999999999999999997555789999999999876433222
Q ss_pred hhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 110 QKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 110 ~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
+ . .+.++++||| +||++||.||++|++||.|+.+++|+.||+.
T Consensus 81 ~---~-------------~~~~~~~fie---~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07281 81 G---K-------------EDSSSAEFLE---RRRAALERYLQRIVSHPSLLQDPDVREFLEK 123 (124)
T ss_pred c---c-------------cccccHHHHH---HHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 1 1 1235678999 7888999999999999999999999999985
No 16
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.96 E-value=2.8e-30 Score=216.30 Aligned_cols=107 Identities=18% Similarity=0.383 Sum_probs=92.8
Q ss_pred eEEEeecceeeC------CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCcc-ccCCCCCCCCCCcchH
Q psy17232 34 LIVDISDALSEK------EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAG-YIIPPAPPRPDFDSSR 106 (313)
Q Consensus 34 l~V~Vsdp~k~g------~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg-~iIPPlP~K~~~~~~~ 106 (313)
+.|.|+||.|++ .||+|+|+|+| .+++|+||||||+|||+.|..+ ||+ ++|||||+|..++
T Consensus 1 ~~~~V~dp~k~~~~~g~~~Yv~Y~I~~~~-------~~~~V~RRYsDF~~L~~~L~~~--~~~~i~vPplP~K~~~g--- 68 (126)
T cd07285 1 FDCVVADPRKGSKMYGLKSYIEYQLTPTN-------TNRSVNHRYKHFDWLYERLLVK--FGLAIPIPSLPDKQVTG--- 68 (126)
T ss_pred CEEEEcCcccccCCCCCcCeEEEEEEecc-------CCeEeeCCccHHHHHHHHHHHh--cCCCcccCCCCCccccC---
Confidence 469999999986 39999999986 3689999999999999999996 764 5699999998652
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccccccchh
Q psy17232 107 EKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVR 178 (313)
Q Consensus 107 ~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~~el~~~ 178 (313)
+|+++||+ +|+.+||.||++|++||+|+.++.|+.||+.+++..|+
T Consensus 69 -----------------------~f~~~FIe---~Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~~~~~w~ 114 (126)
T cd07285 69 -----------------------RFEEEFIK---MRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWK 114 (126)
T ss_pred -----------------------CCCHHHHH---HHHHHHHHHHHHHHcCcCcCCCcHHHHHhCCCCHHHHH
Confidence 25678999 68889999999999999999999999999998655443
No 17
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.96 E-value=1.9e-29 Score=209.03 Aligned_cols=112 Identities=24% Similarity=0.505 Sum_probs=98.2
Q ss_pred eEEEeecceeeC-----CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHH
Q psy17232 34 LIVDISDALSEK-----EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREK 108 (313)
Q Consensus 34 l~V~Vsdp~k~g-----~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K 108 (313)
|+|.|+||.+++ .|++|.|+|+|+.|.|....+.|+|||+||+|||+.|... |||++|||||+|..+..
T Consensus 1 ~~i~V~dP~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~--~p~~~iPplP~K~~~~~---- 74 (118)
T cd06863 1 LECLVSDPQKELDGSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSND--FPACVVPPLPDKHRLEY---- 74 (118)
T ss_pred CEEEEeCcccccCCCccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHH--CcCCcCCCCCCcccccc----
Confidence 689999999875 2899999999999999999999999999999999999995 99999999999987521
Q ss_pred HhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 109 LQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 109 ~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
+ .+ ++++++||+ +|+.+||.||++|+.||.|+.++.|+.||++
T Consensus 75 ---~-~~-------------~~~~~~~ie---~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s 117 (118)
T cd06863 75 ---I-TG-------------DRFSPEFIT---RRAQSLQRFLRRISLHPVLSQSKILHQFLES 117 (118)
T ss_pred ---c-cc-------------cCCCHHHHH---HHHHHHHHHHHHHhcCcccccCcHHHhhcCC
Confidence 0 00 124578888 6888999999999999999999999999986
No 18
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.96 E-value=2.3e-29 Score=208.50 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=99.0
Q ss_pred ceEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHH
Q psy17232 33 VLIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREK 108 (313)
Q Consensus 33 ~l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K 108 (313)
++.|.|+||.++|+ |++|.|.++|+++.|....+.|+||||||+|||+.|... |||++|||+|+|..++
T Consensus 1 ~~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~--~~~~~iPplP~K~~~~----- 73 (116)
T cd07295 1 FLEIEVRNPKTHGIGRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERE--SPRVMIPPLPGKIFTN----- 73 (116)
T ss_pred CeEEEEeCCcEecCCCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHH--CCCCccCCCCCCcccc-----
Confidence 47899999999986 899999999999999999999999999999999999995 9999999999998642
Q ss_pred HhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-Cccccccccccc
Q psy17232 109 LQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFR-LDHQFHVFLQYN 172 (313)
Q Consensus 109 ~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~-~d~~l~~FL~~~ 172 (313)
+|+++||| +||.+||.||++|+.||.|+ .++.|+.||+.+
T Consensus 74 ---------------------~~~~~~ie---~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~ 114 (116)
T cd07295 74 ---------------------RFSDEVIE---ERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDP 114 (116)
T ss_pred ---------------------CCCHHHHH---HHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCC
Confidence 13568888 68889999999999999998 589999999986
No 19
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.96 E-value=7.8e-29 Score=206.28 Aligned_cols=110 Identities=29% Similarity=0.497 Sum_probs=97.3
Q ss_pred EEEeecceeeC----------CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcc
Q psy17232 35 IVDISDALSEK----------EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDS 104 (313)
Q Consensus 35 ~V~Vsdp~k~g----------~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~ 104 (313)
+|.|+||.+++ .|++|.|+++++.|.|....+.|+|||+||+|||++|... |||++|||||+|..++.
T Consensus 1 ~i~v~dp~~~~~~~~~~~~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~--~p~~~iPplP~K~~~~~ 78 (120)
T cd06865 1 KITVSDPKKEQEPSRVPLGGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEA--YRGAFVPPRPDKSVVES 78 (120)
T ss_pred CeEecCcceecCCccccCCCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHH--CCCCeeCCCcCCccccc
Confidence 48999999885 3899999999999999999999999999999999999995 99999999999988632
Q ss_pred hHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 105 SREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 105 ~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
. ..++++||| +||.+||.||++|+.||.|++++.|+.||+.+
T Consensus 79 -------------~----------~~~~~~fie---~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 120 (120)
T cd06865 79 -------------Q----------VMQSAEFIE---QRRVALEKYLNRLAAHPVIGLSDELRVFLTLQ 120 (120)
T ss_pred -------------c----------ccCCHHHHH---HHHHHHHHHHHHHHcCceeecCcHHHHhccCC
Confidence 0 023578999 67779999999999999999999999999863
No 20
>KOG2273|consensus
Probab=99.95 E-value=1.8e-27 Score=240.09 Aligned_cols=211 Identities=26% Similarity=0.435 Sum_probs=163.6
Q ss_pred eEEEeecce-eeC----CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHH
Q psy17232 34 LIVDISDAL-SEK----EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREK 108 (313)
Q Consensus 34 l~V~Vsdp~-k~g----~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K 108 (313)
+.|.+++|. ..+ .|++|.|.|+|++|.|...++.|+|||+||+|||+.|... |||++|||+|+|..++.
T Consensus 110 ~~i~~~~~~~~~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~--~p~~~iPplP~k~~~~~---- 183 (503)
T KOG2273|consen 110 LSITVSDPEPEIGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSK--YPGRIIPPLPEKSIVGS---- 183 (503)
T ss_pred eeeecCCCccccCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHH--CCCCeeCCCCchhhhhc----
Confidence 677777777 333 3899999999999999999999999999999999999996 99999999999987642
Q ss_pred HhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccccc-cchhchhhhhhhh
Q psy17232 109 LQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQD-LSVRSKNKMEMLE 187 (313)
Q Consensus 109 ~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~~e-l~~~~k~~~~~~~ 187 (313)
...+.|+++|++ +||++|++||+||+.||+|+++++|+.||+.+.. .+.- .+.....|
T Consensus 184 -----------------~~~~~~s~ef~e---~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~~~~~~~-~~~~~~~~ 242 (503)
T KOG2273|consen 184 -----------------KSGDSFSDEFIE---KRRKALERFLNRLSLHPVLSNDEDFRLFLESDSKELPTD-VNSRFKSG 242 (503)
T ss_pred -----------------cccCCCCHHHHH---HHHHHHHHHHHHHhcCcccccCHHHHHHhcccccccchh-hHHHHhcc
Confidence 001235678888 7888999999999999999999999999999832 1111 11111111
Q ss_pred ------hHhhhhcccchhhh---ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Q psy17232 188 ------GFLNSFSKTTDQVL---LSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK---------------- 242 (313)
Q Consensus 188 ------~~l~~~~~~~~~~~---~s~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k---------------- 242 (313)
.+++.++. .+.+. ...++++.|.+|.+.++++.+|+.++..+.+.+.+++..++
T Consensus 243 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~l 321 (503)
T KOG2273|consen 243 ADLLSKQFFGETSS-TDAVSLLPSFKKFKESDKEFTEKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAELGKALAQL 321 (503)
T ss_pred hhhccccccCcccc-hhhhhccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221 12222 22567788999999999999999999999999999888776
Q ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17232 243 ---------------------------------------------------DAAKRLLYRRLRCLADYENANRNLERART 271 (313)
Q Consensus 243 ---------------------------------------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~ 271 (313)
+++|.++..|..+++.++.++..+.++++
T Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e 401 (503)
T KOG2273|consen 322 SALEGETDELSEALSGLAKVIESLSKLLEKLTAEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKE 401 (503)
T ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 67788888888888888888887777755
Q ss_pred c
Q psy17232 272 K 272 (313)
Q Consensus 272 ~ 272 (313)
.
T Consensus 402 ~ 402 (503)
T KOG2273|consen 402 Q 402 (503)
T ss_pred H
Confidence 3
No 21
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.95 E-value=1.4e-27 Score=201.31 Aligned_cols=116 Identities=24% Similarity=0.344 Sum_probs=96.1
Q ss_pred eEEEeecceeeCC---------cEEEEEEeeecccc----cccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCC
Q psy17232 34 LIVDISDALSEKE---------KVKFTVHTKKKEVY----FLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRP 100 (313)
Q Consensus 34 l~V~Vsdp~k~g~---------yv~Y~V~tkt~l~~----f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~ 100 (313)
.+|+|+||++.++ |++|.|+|+++.+. |....++|+|||+||+|||++|..+ |||++|||||+|.
T Consensus 1 ~~i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~--~p~~~iPplP~K~ 78 (129)
T cd06864 1 MEITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVT--YPYVIVPPLPEKR 78 (129)
T ss_pred CeeEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHH--CCCCCCCCCCCcc
Confidence 3689999987643 79999999998765 4478899999999999999999996 9999999999998
Q ss_pred CCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 101 DFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 101 ~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
.+... .+++ .++|+++||+ +||++||.||++|++||.|+.|+.|+.||+.+
T Consensus 79 ~~~~~----~~~~--------------~~~~~~~fie---~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~~~ 129 (129)
T cd06864 79 AMFMW----QKLS--------------SDTFDPDFVE---RRRAGLENFLLRVAGHPELCQDKIFLEFLTHE 129 (129)
T ss_pred eeccc----cccc--------------ccCCCHHHHH---HHHHHHHHHHHHHHcChhhhcCcHHHHhcCCC
Confidence 75321 1111 1235678999 67889999999999999999999999999863
No 22
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.94 E-value=2.3e-27 Score=195.58 Aligned_cols=107 Identities=26% Similarity=0.507 Sum_probs=95.4
Q ss_pred EEEeecceeeCC-----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHH
Q psy17232 35 IVDISDALSEKE-----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKL 109 (313)
Q Consensus 35 ~V~Vsdp~k~g~-----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~ 109 (313)
.|.|+||.++++ |++|.|+++|+.+.|....+.|+||||||+|||++|... ||+++|||||+|..++
T Consensus 1 ~v~V~dP~~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~--~~~~~~p~lP~K~~~~------ 72 (113)
T cd06898 1 SVEVRDPRTHKEDDWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKN--ALLIQLPSLPPKNLFG------ 72 (113)
T ss_pred CeEEeCCcEecCCCCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHH--CCCCcCCCCCCCcccc------
Confidence 389999997754 999999999999999888999999999999999999995 9999999999999864
Q ss_pred hhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 110 QKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 110 ~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
+++ +++||+ +||.+||.||++|+.||.|..++.|+.||+.
T Consensus 73 --------~~~-----------~~~fie---~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 73 --------RFN-----------NEGFIE---ERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred --------CCC-----------CHHHHH---HHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 111 257888 6788999999999999999999999999986
No 23
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.94 E-value=1.2e-26 Score=190.50 Aligned_cols=110 Identities=32% Similarity=0.599 Sum_probs=97.5
Q ss_pred eEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHH
Q psy17232 34 LIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKL 109 (313)
Q Consensus 34 l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~ 109 (313)
|.|.|+||.+.|+ |+.|.|+++++.+.|....+.|+|||+||.|||+.|... |||.++||||+|..++.
T Consensus 1 ~~~~V~~p~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~--~~~~~~P~lP~k~~~~~----- 73 (114)
T cd06859 1 FEISVTDPVKVGDGMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEK--YPGRIVPPPPEKQAVGR----- 73 (114)
T ss_pred CEEEEeCcceecCCccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHH--CCCCEeCCCCCCcccCc-----
Confidence 5799999999985 899999999999999999999999999999999999995 99999999999998642
Q ss_pred hhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 110 QKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 110 ~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
+.. +++||+ +|+.+||.||++|++||.|+.++.|+.||+++
T Consensus 74 ---------~~~----------~~~~ie---~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~~~ 114 (114)
T cd06859 74 ---------FKV----------KFEFIE---KRRAALERFLRRIAAHPVLRKDPDFRLFLESD 114 (114)
T ss_pred ---------cCc----------cHHHHH---HHHHHHHHHHHHHhcChhhccCcHHHhhcCCC
Confidence 110 135787 67889999999999999999999999999864
No 24
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.93 E-value=1.6e-26 Score=192.09 Aligned_cols=106 Identities=16% Similarity=0.223 Sum_probs=90.5
Q ss_pred EEEeecceeeCC-cEEEEEEeeec--ccccccCceEEEeeccchHHHHHHHhhhccCcccc-----CCCCCCCCCCcchH
Q psy17232 35 IVDISDALSEKE-KVKFTVHTKKK--EVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYI-----IPPAPPRPDFDSSR 106 (313)
Q Consensus 35 ~V~Vsdp~k~g~-yv~Y~V~tkt~--l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~i-----IPPlP~K~~~~~~~ 106 (313)
.++|+||.++|+ |++|+|+|++. .+.+...++.|+||||||+|||+.|..+ |+|.+ +||+|+|..++
T Consensus 4 ~~~V~dp~~~~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~--~~~~~~~~~~~Pp~P~K~~~g--- 78 (118)
T cd07288 4 FYSVTDPRTHPKGYTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYT--HRNLFRRQEEFPPFPRAQVFG--- 78 (118)
T ss_pred EEEecCCcCcCCCcEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHh--cccccccCCccCCCCCceeec---
Confidence 589999999986 89999998742 2334457999999999999999999985 76654 99999998753
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 107 EKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 107 ~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
+|+++||| +||.+||.||++|++||.|+.+++|+.||+.
T Consensus 79 -----------------------~f~~~fIe---eRR~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 117 (118)
T cd07288 79 -----------------------RFEAAVIE---ERRNAAEAMLLFTVNIPALYNSPQLKEFFRD 117 (118)
T ss_pred -----------------------cCCHHHHH---HHHHHHHHHHHHHhCChhhcCChHHHHHHhc
Confidence 25678999 6788999999999999999999999999975
No 25
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.93 E-value=2.3e-26 Score=192.90 Aligned_cols=106 Identities=25% Similarity=0.497 Sum_probs=92.0
Q ss_pred eEEEeecceeeC------CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHH
Q psy17232 34 LIVDISDALSEK------EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSRE 107 (313)
Q Consensus 34 l~V~Vsdp~k~g------~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~ 107 (313)
.+|+|+||.+.| .||+|.|++.+ ..+.|.||||||+|||+.|... |||++|||||+|..++
T Consensus 1 ~~~~v~~p~~~~~~~g~~~y~~Y~I~~~~-------~~~~V~RRYsdF~~L~~~L~~~--~p~~~iPplP~K~~~~---- 67 (125)
T cd06862 1 YHCTVTNPKKESKFKGLKSFIAYQITPTH-------TNVTVSRRYKHFDWLYERLVEK--YSCIAIPPLPEKQVTG---- 67 (125)
T ss_pred CEEEEcCccccCCCCCCcCEEEEEEEEec-------CcEEEEEecHHHHHHHHHHHHH--CCCCCCCCCCCCcccc----
Confidence 379999999976 38999999865 5789999999999999999995 9999999999998752
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccccccch
Q psy17232 108 KLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSV 177 (313)
Q Consensus 108 K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~~el~~ 177 (313)
+ ++++||+ +|+.+||.||++|++||.|+.++.|+.||+.+++..|
T Consensus 68 ----------~------------~~~~fie---~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~~~~~~ 112 (125)
T cd06862 68 ----------R------------FEEDFIE---KRRERLELWMNRLARHPVLSQSEVFRHFLTCTDEKDW 112 (125)
T ss_pred ----------C------------CCHHHHH---HHHHHHHHHHHHHhcCHhhhcChHHHHHcCCccHHHH
Confidence 1 3467888 6788999999999999999999999999998754433
No 26
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.93 E-value=7.8e-26 Score=188.41 Aligned_cols=105 Identities=18% Similarity=0.282 Sum_probs=90.5
Q ss_pred eEEEeecceeeC-----CcEEEEEEeeecccccccC--------ceEEEeeccchHHHHHHHhhhccCccccCCCCCCCC
Q psy17232 34 LIVDISDALSEK-----EKVKFTVHTKKKEVYFLYR--------TVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRP 100 (313)
Q Consensus 34 l~V~Vsdp~k~g-----~yv~Y~V~tkt~l~~f~~~--------~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~ 100 (313)
|.|.|.++.... .|++|+|.|.|+++.|..+ +|.|+||||||+|||+.|... |||++|||||+|.
T Consensus 2 ~~v~vp~~~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~--~p~~~iPplP~K~ 79 (120)
T cd06868 2 LDLTVPEYQEIRGKTSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEK--YPGTILPPLPRKA 79 (120)
T ss_pred CceecCCceeecCCCCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHH--CCCCCCCCCCCCc
Confidence 556776665442 3999999999999988654 689999999999999999995 9999999999998
Q ss_pred CCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 101 DFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 101 ~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
.++ +++||+ +||.+||.||++|++||.|++++.|+.||..
T Consensus 80 ~~~----------------------------~~~~ie---~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06868 80 LFV----------------------------SESDIR---ERRAAFNDFMRFISKDEKLANCPELLEFLGV 119 (120)
T ss_pred ccC----------------------------CHHHHH---HHHHHHHHHHHHHHcChhhhcCHHHHHHhcC
Confidence 752 246777 6788999999999999999999999999975
No 27
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.92 E-value=3.5e-25 Score=183.96 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=88.0
Q ss_pred EEeecceeeCC-cEEEEEEeeeccccc--ccCceEEEeeccchHHHHHHHhhhccCc-----cccCCCCCCCCCCcchHH
Q psy17232 36 VDISDALSEKE-KVKFTVHTKKKEVYF--LYRTVIVVRQHEEFVWLHDRFEENEAYA-----GYIIPPAPPRPDFDSSRE 107 (313)
Q Consensus 36 V~Vsdp~k~g~-yv~Y~V~tkt~l~~f--~~~~~~V~RRysDF~wL~~~L~~~~~~p-----g~iIPPlP~K~~~~~~~~ 107 (313)
.+|+||.++|+ |++|+|+|++..... ...++.|+||||||.|||+.|..+ || |.++||+|+|..++
T Consensus 5 ~~V~dp~~~~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~--~~~~~~~~~~~Pp~p~k~~~g---- 78 (118)
T cd07287 5 YTVTDPRRHPKGYTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQI--HKNLCRQSELFPPFAKAKVFG---- 78 (118)
T ss_pred EEecCCeEcCCCeEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHh--ccccccCCcccCCCCCceeec----
Confidence 57899999985 999999998632111 125799999999999999999996 65 56899999888753
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 108 KLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 108 K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
+|+++||| +||.+||.||++|++||.|+++++|+.||..
T Consensus 79 ----------------------~~d~~fIe---~RR~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 117 (118)
T cd07287 79 ----------------------RFDESVIE---ERRQCAEDLLQFSANIPALYNSSQLEDFFKG 117 (118)
T ss_pred ----------------------CCCHHHHH---HHHHHHHHHHHHHhcCccccCChHHHHHhcC
Confidence 24678999 6788999999999999999999999999975
No 28
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.92 E-value=3.5e-25 Score=181.95 Aligned_cols=106 Identities=27% Similarity=0.431 Sum_probs=86.8
Q ss_pred EEeecceeeCC-----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHh
Q psy17232 36 VDISDALSEKE-----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQ 110 (313)
Q Consensus 36 V~Vsdp~k~g~-----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~ 110 (313)
|.|+||.+.+| |+.|.|++.+ +.|+||||||+|||+.|... |||++|||||+|..+.....
T Consensus 2 ~~i~~~~~~~~~~~~~y~~Y~I~~~~---------~~V~RRYsdF~~L~~~L~~~--~p~~~iPplP~K~~~~~~~~--- 67 (112)
T cd06867 2 IQIVDAGKSSEGGSGSYIVYVIRLGG---------SEVKRRYSEFESLRKNLTRL--YPTLIIPPIPEKHSLKDYAK--- 67 (112)
T ss_pred cEEccCccccCCCccCEEEEEEEeee---------EEEEeccHHHHHHHHHHHHH--CcCCCcCCCCCcchhhhhcc---
Confidence 67899987754 8999999853 79999999999999999995 99999999999987632100
Q ss_pred hcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 111 KLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 111 ~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
+.+. ..++++||| +|+.+||.||++|+.||.|+.++.|+.||+.+
T Consensus 68 --~~~~------------~~~~~~~ie---~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06867 68 --KPSK------------AKNDAKIIE---RRKRMLQRFLNRCLQHPILRNDIVFQKFLDPN 112 (112)
T ss_pred --cccc------------ccCcHHHHH---HHHHHHHHHHHHHhcChhhccCcHHHHhcCCC
Confidence 0000 124578898 67789999999999999999999999999864
No 29
>KOG2527|consensus
Probab=99.91 E-value=1.4e-25 Score=186.42 Aligned_cols=113 Identities=22% Similarity=0.489 Sum_probs=99.1
Q ss_pred CCCceEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcch
Q psy17232 30 NDNVLIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSS 105 (313)
Q Consensus 30 ~~~~l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~ 105 (313)
..+.|+|.|.||..+|+ |+.|.|...||+|.|...+.+|+||||||+|||++|..+ -.-++|||||.|..+..
T Consensus 14 p~nfLeI~V~nPrt~~~~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~--s~kvvvP~LPgK~~~~~- 90 (144)
T KOG2527|consen 14 PENFLEIDVINPRTHGDGKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERE--SGKVVVPELPGKALFRQ- 90 (144)
T ss_pred ccceEEEEeeCCcccccccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHh--cccccCCCCCcHHHHhc-
Confidence 45789999999998765 899999999999999999999999999999999999984 44589999999986521
Q ss_pred HHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 106 REKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 106 ~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
+ +|. +||| +||.+||.||+.||.||.+.++..|+.||++.
T Consensus 91 -------------~----------~fr-e~IE---eRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~ 130 (144)
T KOG2527|consen 91 -------------L----------PFR-EFIE---ERRQGLEVFLRKVAGHPLLQNERCLHLFLQSE 130 (144)
T ss_pred -------------C----------chH-HHHH---HHHHHHHHHHHHHhCchhhhccHHHHHHHHhh
Confidence 1 121 7899 67789999999999999999999999999986
No 30
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.91 E-value=3.1e-24 Score=176.77 Aligned_cols=106 Identities=23% Similarity=0.326 Sum_probs=91.6
Q ss_pred eEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccC-CCCCCCCCCcchHHH
Q psy17232 34 LIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYII-PPAPPRPDFDSSREK 108 (313)
Q Consensus 34 l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iI-PPlP~K~~~~~~~~K 108 (313)
|.|+|+||.++|+ ||.|+|++.+ .+.+....+.|+||||||+|||+.|... ||+.++ ||+|+|..++
T Consensus 1 ~~~~v~~~~~~~~~~~~yv~Y~I~v~~-~~~~~~~~~~V~RRYSdF~~L~~~L~~~--~~~~~~~~~~P~K~~~~----- 72 (112)
T cd07301 1 LLFEVTDANVVQDAHSKYVLYTIYVIQ-TGQYDPSPAYISRRYSDFERLHRRLRRL--FGGEMAGVSFPRKRLRK----- 72 (112)
T ss_pred CEEEECCCeEeccCCcCEEEEEEEEEe-cCCCCCCceEEEeehHhHHHHHHHHHHH--CCCcCCCCCCCCCcccC-----
Confidence 5799999998875 8999999985 4457778899999999999999999995 998765 5999998752
Q ss_pred HhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 109 LQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 109 ~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
+ ++++||+ +|+.+||.||++|++||.|+.++.|+.||-.
T Consensus 73 ---------~------------~~~~~ie---~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~l 111 (112)
T cd07301 73 ---------N------------FTAETIA---KRSRAFEQFLCHLHSLPELRASPAFLEFFYL 111 (112)
T ss_pred ---------C------------CCHHHHH---HHHHHHHHHHHHHhcCHHHhcChHHHHHhCC
Confidence 2 3568898 7888999999999999999999999999853
No 31
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.90 E-value=7.3e-24 Score=176.23 Aligned_cols=108 Identities=21% Similarity=0.339 Sum_probs=91.4
Q ss_pred EEEeecceeeC------CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccc---cCCCCCCCCCCcch
Q psy17232 35 IVDISDALSEK------EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGY---IIPPAPPRPDFDSS 105 (313)
Q Consensus 35 ~V~Vsdp~k~g------~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~---iIPPlP~K~~~~~~ 105 (313)
.|.|+|+..++ .||+|.|++.|+.+ .+.++.|+||||||+|||+.|... ||+. +|||||+|..++..
T Consensus 4 ~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~--~~~~~~V~RRYseF~~L~~~L~~~--~p~~~~~~~P~lP~K~~~~~~ 79 (120)
T cd07280 4 DVNVGDYTIVGGDTGGGAYVVWKITIETKDL--IGSSIVAYKRYSEFVQLREALLDE--FPRHKRNEIPQLPPKVPWYDS 79 (120)
T ss_pred EEEcCCCeEECCCCCCCCEEEEEEEEEeCCC--CCCcEEEEeeHHHHHHHHHHHHHH--CcccccCcCCCCCCCcccccc
Confidence 58888888663 38999999998765 347899999999999999999996 9987 89999999986421
Q ss_pred HHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 106 REKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 106 ~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
..+++++||| +|+.+||.||++|+.||.|+.++.|+.||+.
T Consensus 80 ----------------------~~~~~~~~ie---~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 120 (120)
T cd07280 80 ----------------------RVNLNKAWLE---KRRRGLQYFLNCVLLNPVFGGSPVVKEFLLP 120 (120)
T ss_pred ----------------------cccCCHHHHH---HHHHHHHHHHHHHhCCHhhccChHHHHhhCC
Confidence 0124578898 6788999999999999999999999999974
No 32
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.90 E-value=1e-23 Score=171.78 Aligned_cols=94 Identities=27% Similarity=0.443 Sum_probs=82.9
Q ss_pred cceeeCC---cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhcCCCC
Q psy17232 40 DALSEKE---KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGE 116 (313)
Q Consensus 40 dp~k~g~---yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~~~~~ 116 (313)
+|++.|. |++|.|.+++ .++.|.||||||+|||+.|..+ |||++|||||+|..++
T Consensus 8 ~~~~~g~~~~y~~Y~i~~~~-------~~~~V~RRYsdF~~L~~~L~~~--~p~~~iP~lP~K~~~~------------- 65 (105)
T cd06866 8 VPEKKGLFLKHVEYEVSSKR-------FKSTVYRRYSDFVWLHEYLLKR--YPYRMVPALPPKRIGG------------- 65 (105)
T ss_pred cccccCcccCCEEEEEEEec-------CCEEEEEEhHHHHHHHHHHHHH--CCCCcCCCCCCCcccc-------------
Confidence 5777774 8999999874 5789999999999999999995 9999999999999763
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 117 GTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 117 ~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
+ ++++||+ +|+.+||.||++|+.||.|+.++.|+.||+.
T Consensus 66 -~------------~~~~~ie---~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 104 (105)
T cd06866 66 -S------------ADREFLE---ARRRGLSRFLNLVARHPVLSEDELVRTFLTE 104 (105)
T ss_pred -C------------CCHHHHH---HHHHHHHHHHHHHhcChhhccChHHHhhcCC
Confidence 1 2457888 6788999999999999999999999999985
No 33
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.90 E-value=9.6e-24 Score=174.97 Aligned_cols=107 Identities=17% Similarity=0.241 Sum_probs=89.0
Q ss_pred eEEEeecceeeCC-cEEEEEEeeeccccc--ccCceEEEeeccchHHHHHHHhhhccCcc----ccCCCCCCCCCCcchH
Q psy17232 34 LIVDISDALSEKE-KVKFTVHTKKKEVYF--LYRTVIVVRQHEEFVWLHDRFEENEAYAG----YIIPPAPPRPDFDSSR 106 (313)
Q Consensus 34 l~V~Vsdp~k~g~-yv~Y~V~tkt~l~~f--~~~~~~V~RRysDF~wL~~~L~~~~~~pg----~iIPPlP~K~~~~~~~ 106 (313)
-.++|+||.++++ |++|.|.+.+....+ ....++|+||||||.|||+.|... ||+ ..+||+|+|..++
T Consensus 3 ~~~~V~d~~~~~~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~--~~~~~~~~~~P~lP~K~~~g--- 77 (117)
T cd06881 3 RSFTVTDTRRHKKGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRL--HKQLYLSGSFPPFPKGKYFG--- 77 (117)
T ss_pred EEEEecCcceecCceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHH--hhhccccCcCCCCCCCcccC---
Confidence 4689999998864 999999998732222 235899999999999999999985 754 3579999998863
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 107 EKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 107 ~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
+ ++++||+ +|+.+||.||++|++||.|+.++.|+.||+.
T Consensus 78 -----------~------------~~~~~Ie---eRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 116 (117)
T cd06881 78 -----------R------------FDAAVIE---ERRQAILELLDFVGNHPALYQSSAFQQFFEE 116 (117)
T ss_pred -----------C------------CCHHHHH---HHHHHHHHHHHHHhCCHhhhcChHHHHHhcc
Confidence 2 3568888 6788999999999999999999999999974
No 34
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.89 E-value=2.9e-23 Score=175.64 Aligned_cols=112 Identities=23% Similarity=0.298 Sum_probs=87.9
Q ss_pred EEEeecceeeCC----cEEEEEEeeeccc-----------ccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCC
Q psy17232 35 IVDISDALSEKE----KVKFTVHTKKKEV-----------YFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPR 99 (313)
Q Consensus 35 ~V~Vsdp~k~g~----yv~Y~V~tkt~l~-----------~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K 99 (313)
.=.|++|++.|+ |++|+|+|+|+++ .|...+|+|.||||||+|||++|.++..+++++.+++|+|
T Consensus 5 ~~~i~~~e~~g~g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~P~k 84 (132)
T cd06893 5 PKTITAKEYKGTGTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGPPK 84 (132)
T ss_pred cceeecchhcCCCCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCCCCc
Confidence 346889999965 8999999998754 5677899999999999999999998533344555566666
Q ss_pred CCCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 100 PDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 100 ~~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
..... . .++ ++++||| +||.+||.||++|++||.|+.+++|+.||..
T Consensus 85 ~~p~l--------p--~g~------------~d~~fie---~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 131 (132)
T cd06893 85 RLFDL--------P--FGN------------MDKDKIE---ARRGLLETFLRQLCSIPEISNSEEVQEFLAY 131 (132)
T ss_pred cCCCC--------C--CCC------------CCHHHHH---HHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence 54210 0 012 3568999 6788999999999999999999999999975
No 35
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.87 E-value=3.6e-22 Score=164.10 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=85.9
Q ss_pred EEEeecceeeC----CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccC-CCCCCCCCCcchHHHH
Q psy17232 35 IVDISDALSEK----EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYII-PPAPPRPDFDSSREKL 109 (313)
Q Consensus 35 ~V~Vsdp~k~g----~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iI-PPlP~K~~~~~~~~K~ 109 (313)
.+.|.++...+ .|+.|.|.+.+.. .+....+.|+||||||.|||+.|... ||+.++ ||+|+|..++
T Consensus 2 ~~~i~~~~~~~~~~~~yv~Y~I~v~~~~-~~~~~~~~v~RRYsdF~~L~~~L~~~--~p~~~~~~~lP~K~~~~------ 72 (112)
T cd07279 2 KFEIVSARTVKEGEKKYVVYQLAVVQTG-DPDTQPAFIERRYSDFLKLYKALRKQ--HPQLMAKVSFPRKVLMG------ 72 (112)
T ss_pred eEEeccCeEEcCCCeeEEEEEEEEEECC-CCCCceEEEecchHhHHHHHHHHHHH--CCCcCCCCCCCCCeecc------
Confidence 34555554443 4999999998764 34456799999999999999999995 999875 6899998753
Q ss_pred hhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 110 QKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 110 ~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
+ ++++||+ +|+.+||.||++|++||.|++++.|+.||+.
T Consensus 73 --------~------------~~~~~ie---~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 111 (112)
T cd07279 73 --------N------------FSSELIA---ERSRAFEQFLGHILSIPNLRDSKAFLDFLQG 111 (112)
T ss_pred --------c------------CCHHHHH---HHHHHHHHHHHHHhCCHhhhcChHHHHHhCC
Confidence 1 3568888 6788999999999999999999999999975
No 36
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.86 E-value=8.6e-22 Score=162.74 Aligned_cols=95 Identities=18% Similarity=0.244 Sum_probs=82.2
Q ss_pred CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCcccc-CCCCCCCCCCcchHHHHhhcCCCCCCCcHHHH
Q psy17232 46 EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYI-IPPAPPRPDFDSSREKLQKLGEGEGTMTKEEF 124 (313)
Q Consensus 46 ~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~i-IPPlP~K~~~~~~~~K~~~~~~~~~~~~~e~f 124 (313)
.|++|+|++.++ ..|....+.|+||||||.|||..|... |++.+ .||+|+|..++ +
T Consensus 17 ~yv~Y~i~~~~~-g~~~~~~~~v~RRYSdF~~L~~~L~~~--~~~~~~~~~lP~K~~~~--------------~------ 73 (114)
T cd07300 17 KHVVYQIIVIQT-GSFDCNKVVIERRYSDFLKLHQELLSD--FSEELEDVVFPKKKLTG--------------N------ 73 (114)
T ss_pred ceEEEEEEEEEe-cCccCceEEEEeccHhHHHHHHHHHHH--ccccCCCCCCCCCcccC--------------C------
Confidence 499999987544 337788999999999999999999985 88876 78999998753 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 125 IKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 125 ~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
++++||+ +|+.+||.||++|++||.|+.++.|+.||+.+
T Consensus 74 ------~~~~~ie---~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 112 (114)
T cd07300 74 ------FSEEIIA---ERRVALRDYLTLLYSLRFVRRSQAFQDFLTHP 112 (114)
T ss_pred ------CCHHHHH---HHHHHHHHHHHHHhcCHhhhcChHHHHHhCCc
Confidence 3568888 67889999999999999999999999999986
No 37
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.86 E-value=7.7e-22 Score=161.70 Aligned_cols=106 Identities=15% Similarity=0.265 Sum_probs=86.6
Q ss_pred CceEEEeecceeeC---CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHH
Q psy17232 32 NVLIVDISDALSEK---EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREK 108 (313)
Q Consensus 32 ~~l~V~Vsdp~k~g---~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K 108 (313)
..++|.|.+.+... .|++|.|++.+.. +.+|.|.||||||+|||+.|... ||+ ++||||+|..++.
T Consensus 2 ~~~~~~i~~~~~~~~~~~~~vY~I~v~~~~----~~~~~v~RRYsdF~~L~~~L~~~--~~~-~~~~lP~K~~~~~---- 70 (110)
T cd07276 2 RPIRPPILGYEVMEERARFTVYKIRVENKV----GDSWFVFRRYTDFVRLNDKLKQM--FPG-FRLSLPPKRWFKD---- 70 (110)
T ss_pred CCccceeeeEEEeecCCCeEEEEEEEEECC----CCEEEEEEehHHHHHHHHHHHHH--CCC-CCCCCCCcceecc----
Confidence 34566666654333 4999999988643 46899999999999999999996 888 7899999987531
Q ss_pred HhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 109 LQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 109 ~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
.++++||+ +|+.+||.||++|++||.|++++.|+.||..+
T Consensus 71 ---------------------~~~~~fie---~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL~~~ 110 (110)
T cd07276 71 ---------------------NFDPDFLE---ERQLGLQAFVNNIMAHKDIAKCKLVREFFCLD 110 (110)
T ss_pred ---------------------cCCHHHHH---HHHHHHHHHHHHHhcCHhhhcChHHHHHhccC
Confidence 14578898 78889999999999999999999999999753
No 38
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.86 E-value=1.6e-21 Score=162.23 Aligned_cols=97 Identities=24% Similarity=0.314 Sum_probs=82.6
Q ss_pred CCcEEEEEEeeecc---cccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhcCCCCCCCcH
Q psy17232 45 KEKVKFTVHTKKKE---VYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTK 121 (313)
Q Consensus 45 g~yv~Y~V~tkt~l---~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~~~~~~~~~~ 121 (313)
+.|+.|.|.+++.- +......|.|.||||||.|||+.|... ||++++||||+|..++ +
T Consensus 20 ~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~--~~~~~~~~lP~K~~~~--------------~--- 80 (119)
T cd06877 20 ERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEF--HGEFPDAPLPSRRIFG--------------P--- 80 (119)
T ss_pred cEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHH--CCCCCCCCCcCCcccC--------------C---
Confidence 45999999988631 234557899999999999999999984 9999999999998763 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 122 EEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 122 e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
++++||+ +|+.+||.||+.|+.||.|+.++.|+.||+.+
T Consensus 81 ---------~~~~~ie---~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~~~ 119 (119)
T cd06877 81 ---------KSYEFLE---SKREIFEEFLQKLLQKPELRGSELLYDFLSPN 119 (119)
T ss_pred ---------CCHHHHH---HHHHHHHHHHHHHhCCcccccCHHHHHhCCCC
Confidence 2467888 67889999999999999999999999999863
No 39
>KOG2528|consensus
Probab=99.86 E-value=1.5e-21 Score=189.57 Aligned_cols=168 Identities=17% Similarity=0.343 Sum_probs=136.4
Q ss_pred CCceEEEeecceeeCC------cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcc
Q psy17232 31 DNVLIVDISDALSEKE------KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDS 104 (313)
Q Consensus 31 ~~~l~V~Vsdp~k~g~------yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~ 104 (313)
...+.|.|.||.|+.. ||+|.++... ....|.|||.+|.|||++|..+ ||+++|||||+|++.+
T Consensus 183 ~~~~~c~v~~p~k~sk~kg~ks~i~y~ltpt~-------t~~~v~rrykhfdwl~~rl~~k--f~~i~vp~Lpdkq~~g- 252 (490)
T KOG2528|consen 183 PSPFRCVVDDPKKESKFKGLKSYIAYQLTPTH-------TNISVSRRYKHFDWLYERLLLK--FPLIPVPPLPDKQVTG- 252 (490)
T ss_pred CCCeeEEecCcccccccccchheeEeeecccc-------cCcchhhcccccHHHHHHHHhh--cccccCCCCCcccccc-
Confidence 4568999999999874 8999998533 3456999999999999999997 9999999999999742
Q ss_pred hHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc-cccch-hchhh
Q psy17232 105 SREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN-QDLSV-RSKNK 182 (313)
Q Consensus 105 ~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~-~el~~-~~k~~ 182 (313)
+|+++||+ +||..|+-|++++|+||+|++++.|..||++. +|-.| .+|++
T Consensus 253 -------------------------r~Ee~fi~---~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~~dek~Wk~GKRk 304 (490)
T KOG2528|consen 253 -------------------------RFEEDFIE---KRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCPTDEKAWKQGKRK 304 (490)
T ss_pred -------------------------chhHHHHH---HHHHHHHHHHHHhhcchHhhhhHHHHHHHcCCcccccccccccc
Confidence 57889999 77778999999999999999999999999996 55333 34544
Q ss_pred hh---hhhhHhhhhcccchhhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17232 183 ME---MLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK 242 (313)
Q Consensus 183 ~~---~~~~~l~~~~~~~~~~~~s~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k 242 (313)
.+ ..|.|+-.+. . ..+ -+.++|...+..+.|+..++..++.|...+..++++..
T Consensus 305 AEkDe~~g~~~~~~~-p-~~l----d~~~ve~~ve~~~~f~k~md~~~~~l~~~~~~~~k~~~ 361 (490)
T KOG2528|consen 305 AEKDELVGNFLLTIS-P-APL----DLQEVEMQVERFKRFTKKMDDAVRQLNTTANEFWKRKV 361 (490)
T ss_pred cccCCcccceeeccC-C-ccc----chHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHhc
Confidence 43 3455555554 2 222 34678889999999999999999999999988887765
No 40
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.84 E-value=4.3e-21 Score=156.90 Aligned_cols=102 Identities=22% Similarity=0.305 Sum_probs=86.6
Q ss_pred eEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHH
Q psy17232 34 LIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKL 109 (313)
Q Consensus 34 l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~ 109 (313)
+.|.|++++.+|+ |+.|.|.+.++ ....|.|.||||||.+||++|.+ +|+. .||+|+|..++.
T Consensus 1 ~~~~v~~~~~~~~~~~~y~vY~I~v~~~----~~~~w~v~RRYsdF~~L~~~L~~---~~~~-~~~lP~K~~~~~----- 67 (107)
T cd06872 1 LSCRVLGAEIVKSGSKSFAVYSVAVTDN----ENETWVVKRRFRNFETLHRRLKE---VPKY-NLELPPKRFLSS----- 67 (107)
T ss_pred CeeEEeeeEEEecCCccEEEEEEEEEEC----CCceEEEEehHHHHHHHHHHHHh---ccCC-CCCCCCccccCC-----
Confidence 4689999988875 89999998764 23689999999999999999987 6765 789999987631
Q ss_pred hhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 110 QKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 110 ~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
+ ++++||| +|+.+||.||++|++||.++.++.|+.||..
T Consensus 68 --------~------------~~~~fie---~Rr~~Le~yL~~l~~~p~i~~s~~~~~FL~~ 106 (107)
T cd06872 68 --------S------------LDGAFIE---ERCKLLDKYLKDLLVIEKVAESHEVWSFLSA 106 (107)
T ss_pred --------C------------CCHHHHH---HHHHHHHHHHHHHhcChhhhcCHHHHHHhcc
Confidence 2 2467888 6788999999999999999999999999964
No 41
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.84 E-value=7.5e-21 Score=155.18 Aligned_cols=99 Identities=18% Similarity=0.287 Sum_probs=83.2
Q ss_pred ceEEEeecceee----CCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHH
Q psy17232 33 VLIVDISDALSE----KEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREK 108 (313)
Q Consensus 33 ~l~V~Vsdp~k~----g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K 108 (313)
++.|.|.+.... +.|++|.|.+. ..+.|.||||||.+||+.|... ||++.+||+|+|..++
T Consensus 3 ~~~i~Ip~~~~~~~~~~~yvvY~I~~~--------~~~~v~rRyseF~~L~~~L~~~--~~~~~~p~lP~K~~~~----- 67 (106)
T cd06886 3 SVPISIPDYKHVEQNGEKFVVYNIYMA--------GRQLCSRRYREFANLHQNLKKE--FPDFQFPKLPGKWPFS----- 67 (106)
T ss_pred cceEecCCcceEcCCCCcEEEEEEEEc--------CCEEEEechHHHHHHHHHHHHH--cCCCCCCCCCCCCcCC-----
Confidence 467777776422 24999999874 2679999999999999999995 9999999999998752
Q ss_pred HhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 109 LQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 109 ~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
++++||+ +|+.+||.||+.|++||.|+.++.|+.||+.
T Consensus 68 ----------------------~~~~~ie---~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 105 (106)
T cd06886 68 ----------------------LSEQQLD---ARRRGLEQYLEKVCSIRVIGESDIMQDFLSD 105 (106)
T ss_pred ----------------------CCHHHHH---HHHHHHHHHHHHHhcCcccccCHHHHHHhcc
Confidence 1346788 6788999999999999999999999999985
No 42
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.84 E-value=1.4e-20 Score=156.69 Aligned_cols=108 Identities=20% Similarity=0.220 Sum_probs=91.5
Q ss_pred ceEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHH
Q psy17232 33 VLIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREK 108 (313)
Q Consensus 33 ~l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K 108 (313)
.|.++|+||++.|+ |++|.|.+....+......|.|.||||||.|||+.|... ||+..+||+|+|..++
T Consensus 4 ~~~~~i~~~~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~--~p~~~~~~lP~K~~~~----- 76 (120)
T cd06873 4 KLTAVIINTGIVKEHGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEK--FPNLSKLSFPGKKTFN----- 76 (120)
T ss_pred EEEEEEeccEEEccCCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHH--CcCCCCCCCCCCcccC-----
Confidence 48899999999886 899999987765555667899999999999999999995 9999999999998763
Q ss_pred HhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcc----cccccccc
Q psy17232 109 LQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDH----QFHVFLQY 171 (313)
Q Consensus 109 ~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~----~l~~FL~~ 171 (313)
+ ++++||+ +|+.+||.||+.|+++|.|++++ .|..||+.
T Consensus 77 ---------~------------~~~~~ie---~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~~FL~~ 119 (120)
T cd06873 77 ---------N------------LDRAFLE---KRRKMLNQYLQSLLNPEVLDANPGLQEIVLDFLEP 119 (120)
T ss_pred ---------C------------CCHHHHH---HHHHHHHHHHHHHhCCHhhccCHHHHHHHHHHcCC
Confidence 2 2457888 68889999999999999999996 55666653
No 43
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.83 E-value=9.7e-21 Score=154.04 Aligned_cols=104 Identities=23% Similarity=0.287 Sum_probs=87.9
Q ss_pred eEEEeecceee-CCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhc
Q psy17232 34 LIVDISDALSE-KEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKL 112 (313)
Q Consensus 34 l~V~Vsdp~k~-g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~ 112 (313)
++|+|.+-... +.|+.|.|.+.+. ...|.|.||||||.|||+.|... ||+.++||+|+|..++.
T Consensus 1 ~~v~ip~~~~~~~~~~~Y~I~v~~~-----~~~~~v~rRYseF~~L~~~L~~~--~~~~~~p~lP~K~~~~~-------- 65 (108)
T cd06897 1 LEISIPTTSVSPKPYTVYNIQVRLP-----LRSYTVSRRYSEFVALHKQLESE--VGIEPPYPLPPKSWFLS-------- 65 (108)
T ss_pred CeEEcCCeEEcCCCeEEEEEEEEcC-----CceEEEEcchHHHHHHHHHHHHH--cCCCCCCCCCCcCEecc--------
Confidence 35777666554 6799999998753 57899999999999999999995 99999999999998641
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CccCcccccccccc
Q psy17232 113 GEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHP--VFRLDHQFHVFLQY 171 (313)
Q Consensus 113 ~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP--~L~~d~~l~~FL~~ 171 (313)
+ .++++||| +|+.+||.||+.|+.|| .+++++.|+.||+.
T Consensus 66 ----~------------~~~~~~ie---~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~~ 107 (108)
T cd06897 66 ----T------------SSNPKLVE---ERRVGLEAFLRALLNDEDSRWRNSPAVKEFLNL 107 (108)
T ss_pred ----c------------CCCHHHHH---HHHHHHHHHHHHHHcCCccchhcCHHHHHHhCC
Confidence 1 13467888 67789999999999999 99999999999975
No 44
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.82 E-value=4.6e-20 Score=150.95 Aligned_cols=93 Identities=18% Similarity=0.300 Sum_probs=79.1
Q ss_pred eCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhcCCCCCCCcHHH
Q psy17232 44 EKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEE 123 (313)
Q Consensus 44 ~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~~~~~~~~~~e~ 123 (313)
.+.|++|.|++.+. +..|.|+||||||.|||+.|... ||+.. ||+|+|..++. +
T Consensus 17 ~~~~~~Y~I~v~~~-----~~~~~v~RRYseF~~L~~~L~~~--~~~~~-~~lP~K~~~~~-------------~----- 70 (109)
T cd06870 17 KKRFTVYKVVVSVG-----RSSWFVFRRYAEFDKLYESLKKQ--FPASN-LKIPGKRLFGN-------------N----- 70 (109)
T ss_pred CCCeEEEEEEEEEC-----CeEEEEEeehHHHHHHHHHHHHH--CcccC-cCCCCCccccc-------------C-----
Confidence 34599999998763 46899999999999999999995 99985 58999998641 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 124 FIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 124 f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
++++||+ +|+.+||.||+.|++||.|++++.|+.||+.+
T Consensus 71 -------~~~~~ie---~Rr~~Le~fL~~ll~~p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 71 -------FDPDFIK---QRRAGLDEFIQRLVSDPKLLNHPDVRAFLQMD 109 (109)
T ss_pred -------CCHHHHH---HHHHHHHHHHHHHhCCHhhhcChHHHHHhCcC
Confidence 3467888 67889999999999999999999999999863
No 45
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.81 E-value=1.1e-19 Score=154.19 Aligned_cols=95 Identities=16% Similarity=0.210 Sum_probs=82.3
Q ss_pred cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhcCCCCCCCcHHHHHH
Q psy17232 47 KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIK 126 (313)
Q Consensus 47 yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~~~~~~~~~~e~f~~ 126 (313)
-+.|.|.+...-|......+.|.||||||+|||+.|... ||++.+||+|+|..++.
T Consensus 44 ~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~~~--~p~~~lPplPpK~~l~~---------------------- 99 (138)
T cd06879 44 DKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLKKL--FPKKKLPAAPPKGLLRM---------------------- 99 (138)
T ss_pred eEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHHHH--CCCCcCCCCCCcccccC----------------------
Confidence 478999988765655566899999999999999999995 99999999999997631
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 127 MKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 127 ~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
++++||| +||.+||.||++|++||.|+.++.|+.||+.+
T Consensus 100 ----~~~~fiE---eRR~gLE~fLq~Ll~~p~l~~s~~v~~FLele 138 (138)
T cd06879 100 ----KNRALLE---ERRHSLEEWMGKLLSDIDLSRSVPVASFLELE 138 (138)
T ss_pred ----CCHHHHH---HHHHHHHHHHHHHHcCccccCCHHHHHHhCCC
Confidence 2468898 67889999999999999999999999999863
No 46
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.81 E-value=1.3e-19 Score=150.91 Aligned_cols=105 Identities=16% Similarity=0.270 Sum_probs=87.4
Q ss_pred CceEEEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhh
Q psy17232 32 NVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQK 111 (313)
Q Consensus 32 ~~l~V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~ 111 (313)
..|++.|.+-.....|+.|.|.+++. .+....|.|+||||||.|||+.|... |+ .||+|+|..++
T Consensus 6 ~~~~~~i~~~~~~~~~t~Y~I~v~~~--~~~~~~w~V~RRYsdF~~Lh~~L~~~----~~-~~plP~K~~~g-------- 70 (120)
T cd06871 6 VPLTCVIEASQNIQSHTEYIIRVQRG--PSPENSWQVIRRYNDFDLLNASLQIS----GI-SLPLPPKKLIG-------- 70 (120)
T ss_pred ceeEEEEecCCCccCcEEEEEEEEEC--CcCCceeEEEeeHHHHHHHHHHHHHc----CC-CCCCCCccccC--------
Confidence 35888888877777899999998863 35567899999999999999999862 33 45899998763
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 112 LGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 112 ~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
+ ++++||+ +|+.+||.||++|+.||.++.++.|+.||+.+
T Consensus 71 ------~------------~~~~~ie---~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 110 (120)
T cd06871 71 ------N------------MDREFIA---ERQQGLQNYLNVILMNPILASCLPVKKFLDPN 110 (120)
T ss_pred ------C------------CCHHHHH---HHHHHHHHHHHHHHcChhhccCHHHHHhcCcc
Confidence 2 2457888 67889999999999999999999999999865
No 47
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.80 E-value=2.4e-19 Score=151.64 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=87.6
Q ss_pred EEEeecceee-----CCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHH
Q psy17232 35 IVDISDALSE-----KEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKL 109 (313)
Q Consensus 35 ~V~Vsdp~k~-----g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~ 109 (313)
.|.|.+.... +.|+.|.|.+....+.+....|.|.||||||.+||+.|... ||++.+||+|+|+.++.
T Consensus 21 ~i~I~~~~~~~~~~~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~--~~~~~~p~~P~K~~~~~----- 93 (133)
T cd06876 21 RVSIQSYISDVEEEGKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKR--YPGVLKLDFPQKRKISL----- 93 (133)
T ss_pred eEEEeeEEeeecCCCceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHH--CcCCCCCCCCccccccC-----
Confidence 5666655432 24899999998765544456899999999999999999995 99999999999998642
Q ss_pred hhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccc
Q psy17232 110 QKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQ 170 (313)
Q Consensus 110 ~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~ 170 (313)
.+. +++||+ +|+.+||.||+.|+.||.++.++.|+.||+
T Consensus 94 --------~~~-----------~~~~ie---~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs 132 (133)
T cd06876 94 --------KYS-----------KTLLVE---ERRKALEKYLQELLKIPEVCEDEEFRKFLS 132 (133)
T ss_pred --------ccC-----------CHHHHH---HHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence 000 356788 678899999999999999999999999996
No 48
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=99.80 E-value=2e-19 Score=162.71 Aligned_cols=122 Identities=40% Similarity=0.673 Sum_probs=111.1
Q ss_pred hHhhhhcccchhhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Q psy17232 188 GFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK------------------------- 242 (313)
Q Consensus 188 ~~l~~~~~~~~~~~~s~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k------------------------- 242 (313)
|||+++++++|++.. ++++|+|+||++.+.|+.+|+.+|++++..+++|+++|+
T Consensus 1 ~~~~~~~k~~de~~~-~~~kd~D~wFe~ek~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~e~t~L~ 79 (218)
T cd07662 1 DFFKNVVKSADGVIV-SGVKDVDDFFEHERTFLLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQDSTDIC 79 (218)
T ss_pred CHHHhhhhhhhHHHH-hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 689999999999887 579999999999999999999999999999999999998
Q ss_pred ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhcCCchh
Q psy17232 243 ---------------------------------------DAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNV 283 (313)
Q Consensus 243 ---------------------------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k~v~~~e~~~ 283 (313)
+|+|++|++|.++|++||+|+++|+|||++++||..+|.++
T Consensus 80 ~~l~~laev~eki~~l~~~~A~~e~l~L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~~kev~~aE~~~ 159 (218)
T cd07662 80 KFFLKVSELFDKTRKIEARVAADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETTQ 159 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred h-hhhhHHHH----HHHHhhhccCCccchhhc
Q psy17232 284 S-CIGDYDVW----RTTRMQTGIWNAPELKTR 310 (313)
Q Consensus 284 ~-~~~~~e~~----~~~~~~~~~~~~~~~~~~ 310 (313)
+ |+++||++ +++-.+++..+..++|..
T Consensus 160 ~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~ 191 (218)
T cd07662 160 QLCCQKFEKISESAKQELIDFKTRRVAAFRKN 191 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 88999998 455566676666666543
No 49
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.79 E-value=3.1e-19 Score=148.59 Aligned_cols=88 Identities=20% Similarity=0.388 Sum_probs=76.7
Q ss_pred CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhcCCCCCCCcHHHHH
Q psy17232 46 EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFI 125 (313)
Q Consensus 46 ~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~~~~~~~~~~e~f~ 125 (313)
.|+.|.|.+.++... ...+.|.|||+||.|||..|... ||++.+||||+|..+
T Consensus 32 ~~~~Y~I~V~~~~~~--~~~~~V~RRYsdF~~L~~~L~~~--fp~~~lP~lP~K~~~----------------------- 84 (119)
T cd06869 32 HHYEFIIRVRREGEE--YRTIYVARRYSDFKKLHHDLKKE--FPGKKLPKLPHKDKL----------------------- 84 (119)
T ss_pred ceEEEEEEEEECCCC--CCceEEEeeHHHHHHHHHHHHHH--CcCCCCCCCcCCchh-----------------------
Confidence 489999999886432 46899999999999999999995 999999999999742
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 126 KMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 126 ~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
|+| +|+.+||.||++|+.||.|+.++.|..||+.+
T Consensus 85 ---------~~E---~Rr~~Le~yL~~Ll~~p~l~~s~~~~~FL~~~ 119 (119)
T cd06869 85 ---------PRE---KLRLSLRQYLRSLLKDPEVAHSSILQEFLTSD 119 (119)
T ss_pred ---------HHH---HHHHHHHHHHHHHhcChhhhcChHHHHhhCCC
Confidence 344 57779999999999999999999999999864
No 50
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.78 E-value=7.3e-19 Score=145.64 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=89.5
Q ss_pred CceEEEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhh
Q psy17232 32 NVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQK 111 (313)
Q Consensus 32 ~~l~V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~ 111 (313)
+...|.|.+....++|+.|.|.+.++ ...|.|.||||||.+||..|... + ++..|++|+|..++
T Consensus 2 ~~~~v~I~~~~~~~~~~~Y~I~V~~~-----~~~w~V~RRYseF~~L~~~L~~~--~-~~~~~~~P~Kk~~~-------- 65 (116)
T cd06875 2 PETKIRIPSAETVEGYTVYIIEVKVG-----SVEWTVKHRYSDFAELHDKLVAE--H-KVDKDLLPPKKLIG-------- 65 (116)
T ss_pred CCEEEEECCEEEECCEEEEEEEEEEC-----CeEEEEEecHHHHHHHHHHHHHH--c-CcccCcCCCccccC--------
Confidence 35678888877778899999998753 46899999999999999999995 5 77889999999874
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 112 LGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 112 ~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
+ ++++||+ +|+.+||.||+.|++||.++.++.|..||+..
T Consensus 66 ------~------------~~~~~ie---~Rr~~Le~yL~~ll~~~~~~~s~~l~~FL~~~ 105 (116)
T cd06875 66 ------N------------KSPSFVE---KRRKELEIYLQTLLSFFQKTMPRELAHFLDFH 105 (116)
T ss_pred ------C------------CCHHHHH---HHHHHHHHHHHHHHhhhcccCCHHHHHHhCCC
Confidence 2 2457888 67889999999999999999999999999987
No 51
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.78 E-value=5.3e-19 Score=143.80 Aligned_cols=86 Identities=17% Similarity=0.326 Sum_probs=75.2
Q ss_pred CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhcCCCCCCCcHHHHH
Q psy17232 46 EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFI 125 (313)
Q Consensus 46 ~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~~~~~~~~~~e~f~ 125 (313)
.|++|.|... +.+.|.||||||.+||..|... ||++.+||+|+|..++.
T Consensus 17 ~y~~Y~I~v~--------~~~~~~rRYseF~~L~~~L~~~--~~~~~~p~lP~K~~~~~--------------------- 65 (104)
T cd06885 17 TYVAYNIHIN--------GVLHCSVRYSQLHGLNEQLKKE--FGNRKLPPFPPKKLLPL--------------------- 65 (104)
T ss_pred cEEEEEEEEC--------CcEEEEechHHHHHHHHHHHHH--cCCCCCCCCCCCccccC---------------------
Confidence 5999999864 3578999999999999999995 99999999999997631
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 126 KMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 126 ~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
+++||+ +|+.+||.||+.|+.||.|+.++.|+.||..
T Consensus 66 ------~~~~ie---~Rr~~Le~yL~~l~~~~~l~~s~~~~~FL~~ 102 (104)
T cd06885 66 ------TPAQLE---ERRLQLEKYLQAVVQDPRIANSDIFNSFLLN 102 (104)
T ss_pred ------CHHHHH---HHHHHHHHHHHHHhcChhhccCHHHHHHHHh
Confidence 246788 6788999999999999999999999999964
No 52
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.77 E-value=1.8e-18 Score=144.72 Aligned_cols=104 Identities=18% Similarity=0.342 Sum_probs=87.1
Q ss_pred ceEEEeecceeeC---CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCcc--------ccCCCCCCCCC
Q psy17232 33 VLIVDISDALSEK---EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAG--------YIIPPAPPRPD 101 (313)
Q Consensus 33 ~l~V~Vsdp~k~g---~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg--------~iIPPlP~K~~ 101 (313)
.|.++|+|+++.. .|++|.|.+.+. .+..|.|+|||+||.+||..|.+. ||. ++|||||+|..
T Consensus 3 ~i~~~I~~~~~~~~~~~y~vY~I~v~~~----~~~~~~V~RRYseF~~L~~~L~~~--fp~~~~~~~~~~~lP~lP~k~~ 76 (123)
T cd06882 3 AVSATIADIEEKRGFTNYYVFVIEVKTK----GGSKYLIYRRYRQFFALQSKLEER--FGPEAGSSAYDCTLPTLPGKIY 76 (123)
T ss_pred cEEEEEeeeeEEeCCCCEEEEEEEEEEc----CCCEEEEEEEHHHHHHHHHHHHHh--CCcccccCCCCCccCCCCCCee
Confidence 5889999987654 389999998753 245799999999999999999995 885 68999999987
Q ss_pred CcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccCccccccccccc
Q psy17232 102 FDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPV-FRLDHQFHVFLQYN 172 (313)
Q Consensus 102 ~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~-L~~d~~l~~FL~~~ 172 (313)
++. . .+|++ +|+.+|+.||+.|+++|. ++.+++|+.||...
T Consensus 77 ~~~--------------~-------------~~~~e---~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~ 118 (123)
T cd06882 77 VGR--------------K-------------AEIAE---RRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQT 118 (123)
T ss_pred cCc--------------c-------------HHHHH---HHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCC
Confidence 642 1 15677 678899999999999985 99999999999876
No 53
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.76 E-value=1.3e-18 Score=160.70 Aligned_cols=144 Identities=21% Similarity=0.439 Sum_probs=125.0
Q ss_pred CCCccCccccccccccc-cccchhchhhhhhhhhHhhhhcccchhhhccCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy17232 156 HPVFRLDHQFHVFLQYN-QDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHT-VKDHNDFFENENNFLHEYHNHLKEATTR 233 (313)
Q Consensus 156 HP~L~~d~~l~~FL~~~-~el~~~~k~~~~~~~~~l~~~~~~~~~~~~s~~-~kd~D~~F~~~k~~l~~l~~~L~~l~~~ 233 (313)
||+|+.+++|+.||++. |++..+.+ ..+|++.+++.++.+++.+.+ ++.+|++|.++++|+++|+.+|..+.++
T Consensus 1 HPvLs~~~~~~~FL~s~~W~~~~~~~----~~~g~~~~~~d~~~~~~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki 76 (243)
T cd07666 1 HPTLTFNEDFKIFLTAQAWELSSHKK----QGPGLLSRMGQTVKAVASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKI 76 (243)
T ss_pred CCccccChHHHHHHcCchHHHHHHHh----cchhhhhhhHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999999997 55554444 345899999988888876543 7999999999999999999999999999
Q ss_pred HHHHHHHHH---------------------------------------------------------------HHHHHHHH
Q psy17232 234 ADRMTFKRK---------------------------------------------------------------DAAKRLLY 250 (313)
Q Consensus 234 ~~~lv~~~k---------------------------------------------------------------~a~K~lL~ 250 (313)
+.|+++++. +++|.+|.
T Consensus 77 ~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk 156 (243)
T cd07666 77 SQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIK 156 (243)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998875 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc----hhhhhcCCchhhhh-----hhHHHHHHHHhhhccCCc
Q psy17232 251 RRLRCLADYENANRNLERARTK----NKDVHAMPPNVSCI-----GDYDVWRTTRMQTGIWNA 304 (313)
Q Consensus 251 ~R~~~~~~ye~a~~~L~k~r~~----~k~v~~~e~~~~~~-----~~~e~~~~~~~~~~~~~~ 304 (313)
.|+.++.+|+...+++.+++.+ ..+|+.++++++|+ ++|+||+. .++.|++.|
T Consensus 157 ~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~-~k~~D~k~~ 218 (243)
T cd07666 157 RRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECANNALKADWERWKQ-NMQTDLRSA 218 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999875 45789999999988 89999999 455666543
No 54
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=99.76 E-value=2.2e-18 Score=156.62 Aligned_cols=120 Identities=38% Similarity=0.666 Sum_probs=107.0
Q ss_pred hHhhhhcccchhhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Q psy17232 188 GFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK------------------------- 242 (313)
Q Consensus 188 ~~l~~~~~~~~~~~~s~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k------------------------- 242 (313)
|||+++++++|.+.. ++++|+|+||++.+.|+.+|+.+|++++..+++||++|+
T Consensus 1 ~~~~~~~k~~~e~~~-~~~ke~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~~ee~t~L~ 79 (218)
T cd07663 1 GFFKNMVKSADEVLF-SGVKEVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSVAAEEPTVIK 79 (218)
T ss_pred CHHHHHHHhHHHHHH-hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHH
Confidence 689999999999887 579999999999999999999999999999999999998
Q ss_pred ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhcCCchh
Q psy17232 243 ---------------------------------------DAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNV 283 (313)
Q Consensus 243 ---------------------------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k~v~~~e~~~ 283 (313)
+|+|++|++|.++|++||+|+++|+|+|.++++|.++|.++
T Consensus 80 kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~~~e~A~~~L~KaR~k~kev~~aE~~~ 159 (218)
T cd07663 80 KYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYMLNIEAAKDLLYRRARALADYENSNKALDKARLKSKDVKQAEAHQ 159 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred h-hhhhHHHHHH----HHhhhccCCccchh
Q psy17232 284 S-CIGDYDVWRT----TRMQTGIWNAPELK 308 (313)
Q Consensus 284 ~-~~~~~e~~~~----~~~~~~~~~~~~~~ 308 (313)
+ |+.+||++.. +-.+++..+...+|
T Consensus 160 ~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk 189 (218)
T cd07663 160 QECCQKFEKLSESAKQELISFKRRRVAAFR 189 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 8899999944 33444444444433
No 55
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.75 E-value=5.4e-18 Score=134.50 Aligned_cols=102 Identities=26% Similarity=0.506 Sum_probs=86.6
Q ss_pred EEEeecceee----CCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHh
Q psy17232 35 IVDISDALSE----KEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQ 110 (313)
Q Consensus 35 ~V~Vsdp~k~----g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~ 110 (313)
.|.|.++... ++++.|.|.+..+. ...+.|+|||+||.|||+.|... +|+..+|++|+|..++.
T Consensus 1 ~i~I~~~~~~~~~~~~~~~Y~i~v~~~~----~~~~~v~rrysdF~~L~~~L~~~--~~~~~~p~lP~k~~~~~------ 68 (106)
T cd06093 1 SVSIPDYEKVKDGGKKYVVYIIEVTTQG----GEEWTVYRRYSDFEELHEKLKKK--FPGVILPPLPPKKLFGN------ 68 (106)
T ss_pred CEEeCCceEEcCCCCCEEEEEEEEEECC----CCeEEEEeehHHHHHHHHHHHHH--CCCCccCCCCCCccccc------
Confidence 3778888876 56999999998743 46899999999999999999995 99999999999987631
Q ss_pred hcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 111 KLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 111 ~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
.+.++++ +|+.+|+.||+.|+.||.+..++.+..||+.
T Consensus 69 --------------------~~~~~~~---~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~~ 106 (106)
T cd06093 69 --------------------LDPEFIE---ERRKQLEQYLQSLLNHPELRNSEELKEFLEL 106 (106)
T ss_pred --------------------CCHHHHH---HHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 1235666 6788999999999999999999999999863
No 56
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=99.74 E-value=2.8e-17 Score=166.33 Aligned_cols=108 Identities=19% Similarity=0.313 Sum_probs=94.5
Q ss_pred CCCceEEEeecceeeC-------CcEEEEEEeeecccccccCce---EEEeeccchHHHHHHHhhhccCccccCCCCCCC
Q psy17232 30 NDNVLIVDISDALSEK-------EKVKFTVHTKKKEVYFLYRTV---IVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPR 99 (313)
Q Consensus 30 ~~~~l~V~Vsdp~k~g-------~yv~Y~V~tkt~l~~f~~~~~---~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K 99 (313)
.+..+.+.|+.|.+.+ .++.|.|.+.+++|.|..... .|.||||||+|||+.|... ||+|+|||+|+|
T Consensus 127 ~~~~~~~~~~~p~s~~~~~~s~~~~~~y~i~~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~--~p~~~iPplP~K 204 (524)
T COG5391 127 LDYFISSTVSNPQSLTLLVDSRDKHTSYEIITVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKL--LPLCAIPPLPSK 204 (524)
T ss_pred hHhHhhhccccchhcccccccCCCcceeeEEEeecCccccccccccceeeeccccHHHHHHHhhhh--CCCCCCCCCCch
Confidence 4667999999998654 379999999999999998888 9999999999999999996 899999999999
Q ss_pred CCCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcc
Q psy17232 100 PDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDH 163 (313)
Q Consensus 100 ~~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~ 163 (313)
+..+. +.+ ++|+++|++ +|+.+|+.||++++.||.|+++.
T Consensus 205 ~~~s~-------------------~~~--~~~~~~~i~---~r~~~L~~~~~~~~~hp~lsn~~ 244 (524)
T COG5391 205 KSNSE-------------------YYG--DRFSDEFIE---ERRQSLQNFLRRVSTHPLLSNYK 244 (524)
T ss_pred hhhcc-------------------ccc--cccchHHHH---HHHHHHHHHHHHHhcCccccccc
Confidence 97531 111 567889999 78899999999999999999877
No 57
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=99.74 E-value=1.1e-17 Score=152.38 Aligned_cols=106 Identities=58% Similarity=0.896 Sum_probs=99.5
Q ss_pred hHhhhhcccch-hhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Q psy17232 188 GFLNSFSKTTD-QVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK------------------------ 242 (313)
Q Consensus 188 ~~l~~~~~~~~-~~~~s~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k------------------------ 242 (313)
|||+++++++| .+.. .+++|+|+||++.+.|+.+|+++|++++..+++||++|+
T Consensus 1 g~~k~~~k~~D~~v~~-~~~~d~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~t~L 79 (219)
T cd07621 1 GFLKSISKSADEELLL-SGQKDVDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSEPTPL 79 (219)
T ss_pred CHHHHhHHhhhHHHHc-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchH
Confidence 68999999999 5444 578999999999999999999999999999999999998
Q ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhcCCch
Q psy17232 243 ----------------------------------------DAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPN 282 (313)
Q Consensus 243 ----------------------------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k~v~~~e~~ 282 (313)
+|+|++|++|.++|++||+|+++|+|||+++++|.++|.+
T Consensus 80 ~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~~l~rR~ral~~~q~A~k~L~KaR~k~~~v~~AE~~ 159 (219)
T cd07621 80 DKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKDLLYRRLRCLANYENANKNLEKARAKNKDVHAAEAA 159 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhchhhHHHHHHH
Confidence 9999999999999999999999999999999999999999
Q ss_pred hh-hhhhHHHHHH
Q psy17232 283 VS-CIGDYDVWRT 294 (313)
Q Consensus 283 ~~-~~~~~e~~~~ 294 (313)
++ |+.+||++..
T Consensus 160 ~~~a~~~Fe~iS~ 172 (219)
T cd07621 160 QQEACEKFESMSE 172 (219)
T ss_pred HHHHHHHHHHHHH
Confidence 99 8899999854
No 58
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.73 E-value=7.2e-18 Score=134.95 Aligned_cols=91 Identities=24% Similarity=0.427 Sum_probs=74.8
Q ss_pred cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhcCCCCCCCcHHHHHH
Q psy17232 47 KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIK 126 (313)
Q Consensus 47 yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~~~~~~~~~~e~f~~ 126 (313)
|+.|.|++.++ ...|.|.|||+||.|||+.|... ||+..+||+|+|..++. .+.
T Consensus 14 ~~~~~v~~~~~-----~~~~~v~RRysdF~~L~~~L~~~--~~~~~lP~lP~k~~~~~-----------~~~-------- 67 (105)
T smart00312 14 YYVIEIETKTG-----LEEWTVSRRYSDFLELHSKLKKH--FPRRILPPLPPKKLFGR-----------LNN-------- 67 (105)
T ss_pred EEEEEEEECCC-----CceEEEEEEHHHHHHHHHHHHHH--CcCCCCCCCCCchhccc-----------CCc--------
Confidence 67777776542 26899999999999999999995 99999999999987531 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC-ccccccccc
Q psy17232 127 MKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRL-DHQFHVFLQ 170 (313)
Q Consensus 127 ~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~-d~~l~~FL~ 170 (313)
+++++|+ +|+.+||.||+.|++||.++. ++.|..||+
T Consensus 68 ----~~~~~i~---~R~~~L~~yL~~l~~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 68 ----FSEEFIE---KRRRGLERYLQSLLNHPELINESEVVLSFLE 105 (105)
T ss_pred ----CCHHHHH---HHHHHHHHHHHHHHcCHhhhccChHHHHhcC
Confidence 2356777 678899999999999999999 999999985
No 59
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.72 E-value=2.5e-17 Score=138.55 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=84.1
Q ss_pred ceEEEeecce--eeCC--cEEEEEEeeecc-----cccccCceEEEeeccchHHHHHHHhhhccCccc--cCCCCCCCCC
Q psy17232 33 VLIVDISDAL--SEKE--KVKFTVHTKKKE-----VYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGY--IIPPAPPRPD 101 (313)
Q Consensus 33 ~l~V~Vsdp~--k~g~--yv~Y~V~tkt~l-----~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~--iIPPlP~K~~ 101 (313)
...|.|.++. ..++ |+.|.|.+...- +.-....|.|.|||+||.+||+.|.+. ||+. +.+|+|+|..
T Consensus 8 ~w~~~I~~~~~~~~~~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~--~~~~~~~~lP~ppKk~ 85 (127)
T cd06878 8 KWRANIQSAEVTVEDDKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKEC--SSWLKKVELPSLSKKW 85 (127)
T ss_pred cceEEEeeeEEEcCCCeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHH--CCCccccCCCCCCccc
Confidence 3667777766 3333 899999987541 122345799999999999999999995 7764 5566677766
Q ss_pred CcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 102 FDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 102 ~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
++ + ++++||| +||.+||.||+.|+.||.|+.++.|..||..
T Consensus 86 ~~--------------~------------~~~~fle---~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLsp 126 (127)
T cd06878 86 FK--------------S------------IDKKFLD---KSKNQLQKYLQFILEDETLCQSEALYSFLSP 126 (127)
T ss_pred cc--------------c------------CCHHHHH---HHHHHHHHHHHHHhCChhhcCCHHHHHHcCC
Confidence 53 1 2467888 7888999999999999999999999999975
No 60
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.72 E-value=1.3e-17 Score=133.85 Aligned_cols=111 Identities=23% Similarity=0.444 Sum_probs=86.2
Q ss_pred CCceEEEeecceeeCC--cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHH
Q psy17232 31 DNVLIVDISDALSEKE--KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREK 108 (313)
Q Consensus 31 ~~~l~V~Vsdp~k~g~--yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K 108 (313)
|..++|.|.|+.+.++ ...|.+.+..... ...|.|+|||+||.+||+.|... +|+..+||+|+++.+...
T Consensus 1 ~~~~~v~v~~~~~~~~~~~~~~~~~i~~~~~---~~~~~v~rry~dF~~L~~~L~~~--~~~~~~p~~P~~~~~~~~--- 72 (113)
T PF00787_consen 1 DDIIQVSVVDPETSGNKKKTYYIYQIELQDG---KESWSVYRRYSDFYELHRKLKKR--FPSRKLPPFPPKQWFSNS--- 72 (113)
T ss_dssp -SEEEEEEEEEEEESSSSEEEEEEEEEETTS---SSEEEEEEEHHHHHHHHHHHHHH--HTTSGSTSSSTSSSSSSS---
T ss_pred CcEEEEEEcCCEEEcCCCEEEEEEEEEECCC---CEEEEEEEEHHHHHHHHHHHhhh--hcccccccCCcccccccc---
Confidence 3568999999986643 3444444433211 47899999999999999999996 999999999999986420
Q ss_pred HhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 109 LQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 109 ~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
+. .++++++ +|+.+|+.||+.|++||.+..++.+..||+.+
T Consensus 73 --------~~------------~~~~~~~---~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~~ 113 (113)
T PF00787_consen 73 --------RN------------LDPEFIE---ERRQALEKYLQSLLSHPELRSSEALKEFLESS 113 (113)
T ss_dssp --------ST------------TSHHHHH---HHHHHHHHHHHHHHTSCHHHHSHHHHHHHCT-
T ss_pred --------cc------------ccHHHHH---HHHHHHHHHHHHHHcChhhhCchHHHHhcCCC
Confidence 01 2346677 67889999999999999999999999999863
No 61
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.71 E-value=3e-17 Score=136.47 Aligned_cols=90 Identities=13% Similarity=0.237 Sum_probs=76.2
Q ss_pred CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhcCCCCCCCcHHHHH
Q psy17232 46 EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFI 125 (313)
Q Consensus 46 ~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~~~~~~~~~~e~f~ 125 (313)
.|++|.|.++++ ...|.|.||||||.|||..|... ||+..+|++|+|..++.
T Consensus 17 ~y~vY~I~v~~~-----~~~w~V~RRYseF~~L~~~L~~~--~~~~~~~~~P~Kk~~g~--------------------- 68 (118)
T cd07277 17 AHHVYQVYIRIR-----DDEWNVYRRYSEFYELHKKLKKK--FPVVRSFDFPPKKAIGN--------------------- 68 (118)
T ss_pred CEEEEEEEEEEC-----CCEEEEEecHHHHHHHHHHHHHH--CCCCCCCCCCCCCccCC---------------------
Confidence 489999998764 46899999999999999999995 99988999999988641
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 126 KMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 126 ~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
++++||| +|+.+||.||+.|++| .+..++.|..||+..
T Consensus 69 -----~~~~~ie---~Rr~~Le~yL~~ll~~-~~~~~~~~~~~~~~~ 106 (118)
T cd07277 69 -----KDAKFVE---ERRKRLQVYLRRVVNT-LIQTSPELTACPSKE 106 (118)
T ss_pred -----CCHHHHH---HHHHHHHHHHHHHHHH-HHHhCchhhcCCCHH
Confidence 2357888 6788999999999998 888888787777765
No 62
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.70 E-value=5.6e-17 Score=133.14 Aligned_cols=85 Identities=22% Similarity=0.263 Sum_probs=72.6
Q ss_pred CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhcCCCCCCCcHHHHH
Q psy17232 46 EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFI 125 (313)
Q Consensus 46 ~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~~~~~~~~~~e~f~ 125 (313)
.|+.|.|.+..+ +..|+|.||||||.+||+.|... |+ +||+|+|..+ +
T Consensus 18 ~y~~Y~I~v~~~-----~~~~~v~RRYseF~~Lh~~L~~~--~~---~p~~P~K~~~---------------~------- 65 (110)
T cd06880 18 PYTVFTIEVLVN-----GRRHTVEKRYSEFHALHKKLKKS--IK---TPDFPPKRVR---------------N------- 65 (110)
T ss_pred CeEEEEEEEEEC-----CeEEEEEccHHHHHHHHHHHHHH--CC---CCCCCCCCcc---------------C-------
Confidence 599999998753 35899999999999999999995 66 8999999753 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 126 KMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 126 ~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
++++||+ +|+.+||.||+.|+.||. .+..|..||+.+
T Consensus 66 -----~~~~~ie---~Rr~~Le~yL~~ll~~~~--~s~~l~~FL~~~ 102 (110)
T cd06880 66 -----WNPKVLE---QRRQGLEAYLQGLLKINE--LPKQLLDFLGVR 102 (110)
T ss_pred -----CCHHHHH---HHHHHHHHHHHHHHcCcc--ccHHHHHHhCCC
Confidence 1356788 688899999999999999 689999999987
No 63
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.65 E-value=5.1e-16 Score=142.99 Aligned_cols=137 Identities=21% Similarity=0.380 Sum_probs=115.7
Q ss_pred CCCccCccccccccccccccchhchhhhhhhhhHhhhhcccchhhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17232 156 HPVFRLDHQFHVFLQYNQDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRAD 235 (313)
Q Consensus 156 HP~L~~d~~l~~FL~~~~el~~~~k~~~~~~~~~l~~~~~~~~~~~~s~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~ 235 (313)
||+|++++.|+.||++. ++..+.++. +|.+..++.+...++.+.+++.+|++|.++++|+++|+..|..+.+++.
T Consensus 1 HPvLs~~~~f~~FLts~-dw~a~~kq~----~~~~~~~~~~~~~lna~~kv~~~d~eF~e~~ey~d~l~~~l~~ieki~~ 75 (240)
T cd07667 1 HPVLSFNEHFNVFLTAK-DLNAYKKQG----IALLSKMGESVKYVTGGYKLRSRPLEFAAIGDYLDTFALKLGTIDRIAQ 75 (240)
T ss_pred CCccccChHHHHHHcch-hHHHHhhcc----cccccccchHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999998 666555532 3555666665555555578999999999999999999999999999999
Q ss_pred HHHHHHH---------------------------------------------------------------HHHHHHHHHH
Q psy17232 236 RMTFKRK---------------------------------------------------------------DAAKRLLYRR 252 (313)
Q Consensus 236 ~lv~~~k---------------------------------------------------------------~a~K~lL~~R 252 (313)
|++++.. +|+|.+|++|
T Consensus 76 Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~vlK~R 155 (240)
T cd07667 76 RIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSESMKNVLKKR 155 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998775 8999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc----hhhhhcCCchhhhh-----hhHHHHHHHHh
Q psy17232 253 LRCLADYENANRNLERARTK----NKDVHAMPPNVSCI-----GDYDVWRTTRM 297 (313)
Q Consensus 253 ~~~~~~ye~a~~~L~k~r~~----~k~v~~~e~~~~~~-----~~~e~~~~~~~ 297 (313)
+++|.+||.+.+++.-+|++ ..+|+.++++++|+ +++++|+..|+
T Consensus 156 dqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~ 209 (240)
T cd07667 156 DQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRVECFNADLKADMERWQNNKR 209 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999776665 44789999999988 88999988544
No 64
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=99.64 E-value=7.5e-16 Score=126.28 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=82.8
Q ss_pred EEeecceee---CCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhc
Q psy17232 36 VDISDALSE---KEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKL 112 (313)
Q Consensus 36 V~Vsdp~k~---g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~ 112 (313)
|+|-|-++. +.|+.|.|.++.+- .+..+.|.|||+||.+||..|... ||++.+|++|+|..++.+
T Consensus 2 ~~i~~~~~~~~~~~~~vY~I~V~~~~---~~~~~~V~RRYseF~~Lh~~L~~~--fp~~~lp~lP~k~~~~~~------- 69 (109)
T cd06883 2 VSVFGFQKRYSPEKYYIYVVKVTREN---QTEPSFVFRTFEEFQELHNKLSLL--FPSLKLPSFPARVVLGRS------- 69 (109)
T ss_pred cEEEEEEEEecCCceEEEEEEEEECC---CCCeEEEEecHHHHHHHHHHHHHH--CCCCcCCCCCCCcccCcc-------
Confidence 566666655 35899999987532 135689999999999999999995 999999999999876420
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccCcccccccccc
Q psy17232 113 GEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHP-VFRLDHQFHVFLQY 171 (313)
Q Consensus 113 ~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP-~L~~d~~l~~FL~~ 171 (313)
.+.++++ +|+.+|+.||+.|+++| .+++++.|..||..
T Consensus 70 ------------------~~~~~~e---~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 70 ------------------HIKQVAE---RRKIELNSYLKSLFNASPEVAESDLVYTFFHP 108 (109)
T ss_pred ------------------chhHHHH---HHHHHHHHHHHHHHcCCHHHhcCHHHHHhcCC
Confidence 1235676 78889999999999985 99999999999864
No 65
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=99.58 E-value=9.9e-15 Score=122.84 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=77.0
Q ss_pred eEEEeecceeeC----CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHH
Q psy17232 34 LIVDISDALSEK----EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKL 109 (313)
Q Consensus 34 l~V~Vsdp~k~g----~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~ 109 (313)
|+|+|.++...+ .|+.|.|.+++ .+..|.|.||||||.+||+.|... ||+...||+|+|..++.
T Consensus 1 ~~i~Ip~~~~~~~~~~~y~vY~I~v~~-----~~~~w~V~RRYseF~~Lh~~L~~~--~p~~~~~~fP~Kk~~g~----- 68 (127)
T cd06874 1 IKITIPRYVLRGQGKDEHFEFEVKITV-----LDETWTVFRRYSRFRELHKTMKLK--YPEVAALEFPPKKLFGN----- 68 (127)
T ss_pred CEEEECCeEEecCCCCcEEEEEEEEEE-----CCcEEEEEeeHHHHHHHHHHHHHH--cCCCccCCCCCceecCC-----
Confidence 467787766543 49999999875 246799999999999999999985 99988999999998742
Q ss_pred hhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccCcccc
Q psy17232 110 QKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQ-HPVFRLDHQF 165 (313)
Q Consensus 110 ~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~-HP~L~~d~~l 165 (313)
. +++||| +|+.+||.||+.|.+ .+.+..++.+
T Consensus 69 ---------~------------~~~~ie---~Rr~~Le~yL~~Ll~~~~~~~~~~~~ 101 (127)
T cd06874 69 ---------K------------SERVAK---ERRRQLETYLRNFFSVCLKLPACPLY 101 (127)
T ss_pred ---------C------------CHHHHH---HHHHHHHHHHHHHHHhchhccCCccc
Confidence 1 246788 678899999999986 5777777754
No 66
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=99.52 E-value=6.3e-14 Score=115.40 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=82.2
Q ss_pred EEEeecceeeC---CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhh
Q psy17232 35 IVDISDALSEK---EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQK 111 (313)
Q Consensus 35 ~V~Vsdp~k~g---~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~ 111 (313)
.|+|-|-+|.- .|.+|.|.++... ...++.|.|||+||.+||..|... ||+..+||||.|..++.
T Consensus 3 ~v~v~~~~kr~~~~~~yvY~I~V~~~~---~~~~~~V~RrYseF~~Lh~~L~~~--FP~~~lp~LP~k~~~~~------- 70 (111)
T cd06884 3 RVTVVGFQKRYDPEKYYVYVVEVTREN---QASPQHVFRTYKEFLELYQKLCRK--FPLAKLHPLSTGSHVGR------- 70 (111)
T ss_pred EEEEEEEEEEecCCCeEEEEEEEEEcC---CCceEEEEeEHHHHHHHHHHHHHH--CCCCCCCCCCCceeecC-------
Confidence 57788877664 3789999976432 235789999999999999999995 99999999999976531
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccCccccccccc
Q psy17232 112 LGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQ-HPVFRLDHQFHVFLQ 170 (313)
Q Consensus 112 ~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~-HP~L~~d~~l~~FL~ 170 (313)
.. +.++.| +|+..||.||+.|.+ .|.+++|+.+..|+.
T Consensus 71 -------~~-----------~~~v~e---~R~~~L~~Yl~~Ll~~~~~is~~~~v~~FF~ 109 (111)
T cd06884 71 -------SN-----------IKSVAE---KRKQDIQQFLNSLFKMAEEVSHSDLVYTFFH 109 (111)
T ss_pred -------Cc-----------chHHHH---HHHHHHHHHHHHHHcCCHHHhcChHHHHhcC
Confidence 11 134555 677899999999998 589999999999985
No 67
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=99.52 E-value=8e-14 Score=114.79 Aligned_cols=101 Identities=16% Similarity=0.178 Sum_probs=83.4
Q ss_pred EEEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCc--------cccCCCCCCCCCCcchH
Q psy17232 35 IVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYA--------GYIIPPAPPRPDFDSSR 106 (313)
Q Consensus 35 ~V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~p--------g~iIPPlP~K~~~~~~~ 106 (313)
.++|.......++..|.|..+.. .+..+.|.|||+||.+||.+|.+. || +.++|+||++-...
T Consensus 2 ~~~V~~~~~~~~~y~Y~i~v~~s----~~~~~~v~RrY~dFy~Lh~~L~~~--fp~eag~~~~~~~lP~lP~~~~~~--- 72 (112)
T cd06890 2 SASVESVLLEDNRYWYRVRATLS----DGKTRYLCRYYQDFYKLHIALLDL--FPAEAGRNSSKRILPYLPGPVTDV--- 72 (112)
T ss_pred eEEEEEEEEECCEEEEEEEEEEc----CCcEEEEEEEHHHHHHHHHHHHHh--CcHhhCCCCCCCcCCCCCCCccCc---
Confidence 46777777777899999998753 367899999999999999999996 87 56799999986431
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccCcccccccccc
Q psy17232 107 EKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHP-VFRLDHQFHVFLQY 171 (313)
Q Consensus 107 ~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP-~L~~d~~l~~FL~~ 171 (313)
. +.++++ +|+.+|+.||+.|+.+| .++.|+.++.|+..
T Consensus 73 ------------~------------~~~~~e---~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 73 ------------V------------NDSISL---KRLNDLNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred ------------c------------hhHHHH---HHHHHHHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 0 135566 68889999999999999 99999999999864
No 68
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.50 E-value=9.2e-14 Score=118.80 Aligned_cols=102 Identities=23% Similarity=0.242 Sum_probs=76.9
Q ss_pred ceEEEeecceeeC------CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCC------------
Q psy17232 33 VLIVDISDALSEK------EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIP------------ 94 (313)
Q Consensus 33 ~l~V~Vsdp~k~g------~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIP------------ 94 (313)
.+.+.|.|-++.. .++.|+|.+.. ....|.|.|||+||.+||..|... ++++-+|
T Consensus 3 ~i~a~I~~~er~~~~~~~~~~~~Y~Iev~~-----g~~~W~V~RRy~~F~~Lh~~L~~~--~~~l~~p~p~k~~~~~~~~ 75 (140)
T cd06895 3 PIKARITDVERSGTTRHLLNPNLYTIELQH-----GQFTWTIKRRYKHFQELHQALKLY--RALLRIPLPTRRHKEERLS 75 (140)
T ss_pred CcEEEEeEEeccCCCCCCCceEEEEEEEEE-----CCEEEEEEeeHHHHHHHHHHHHHh--cccccccCchHHhhhhhhc
Confidence 3567777654322 37999999853 346899999999999999999983 4554444
Q ss_pred -----------------CCCCCCCCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy17232 95 -----------------PAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHP 157 (313)
Q Consensus 95 -----------------PlP~K~~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP 157 (313)
++|.|+.+. .++++++ +|+.+||.||+.|+.+|
T Consensus 76 ~~~~~~~~~~~~~~~lP~lP~~~~~~---------------------------~~~~~ie---~Rr~~Le~YL~~LL~~~ 125 (140)
T cd06895 76 LKRSRKPEREKKNRRLPSLPALPDIL---------------------------VSEEQLD---SRKKQLENYLQNLLKIP 125 (140)
T ss_pred cccccccccccccccCCCCCCccccc---------------------------cCHHHHH---HHHHHHHHHHHHHHcCh
Confidence 444443210 1357888 67889999999999999
Q ss_pred CccCcccccccccc
Q psy17232 158 VFRLDHQFHVFLQY 171 (313)
Q Consensus 158 ~L~~d~~l~~FL~~ 171 (313)
.+++++.+..||+-
T Consensus 126 ~~rn~~~~~~FLeV 139 (140)
T cd06895 126 DYRNHPETLEFLEV 139 (140)
T ss_pred hhhcCHHHHhhhcc
Confidence 99999999999974
No 69
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=99.43 E-value=8e-13 Score=109.92 Aligned_cols=101 Identities=15% Similarity=0.145 Sum_probs=82.7
Q ss_pred EEEeecceeeC---CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCcc---------ccCCCCCCCCCC
Q psy17232 35 IVDISDALSEK---EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAG---------YIIPPAPPRPDF 102 (313)
Q Consensus 35 ~V~Vsdp~k~g---~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg---------~iIPPlP~K~~~ 102 (313)
.|.|.+-+|.. +|..|.|..+.. .++++.|.|||+||.-||..|.+. ||. .++|+||+|..+
T Consensus 3 ~~~~~~~~kr~~~~~~y~Y~i~v~~s----~~~~~~v~RrYsdF~~L~~~L~~~--fp~Eag~~~~~~r~lP~lP~k~~~ 76 (118)
T cd06887 3 HIALLGFEKRFVPSQHYVYMFLVKWQ----DLSEKLVYRRFTEIYEFHKTLKEM--FPIEAGDINKENRIIPHLPAPKWF 76 (118)
T ss_pred eEEEEEEEEeecCCCcEEEEEEEEEc----CCcEEEEEeeHHHHHHHHHHHHHh--CCccccccCCCCCcCCCCCCCccc
Confidence 57788888776 589998887652 346789999999999999999995 887 899999999887
Q ss_pred cchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccCccccccccccc
Q psy17232 103 DSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLA-QHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 103 ~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~-~HP~L~~d~~l~~FL~~~ 172 (313)
+.+ +..| +|+..|+.||+.|+ ..|.++.++.++.|+...
T Consensus 77 ~~~----------------------------~v~e---~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~ 116 (118)
T cd06887 77 DGQ----------------------------RAAE---NRQGTLTEYCSTLLSLPPKISRCPHVLDFFKVR 116 (118)
T ss_pred Ccc----------------------------hHHH---HHHHHHHHHHHHHHhCCchhhCCHHHHHHhCcC
Confidence 421 2344 57889999999995 567999999999999764
No 70
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.39 E-value=1.6e-12 Score=117.24 Aligned_cols=85 Identities=22% Similarity=0.443 Sum_probs=78.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q psy17232 208 DHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK--------------------------------------------- 242 (313)
Q Consensus 208 d~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k--------------------------------------------- 242 (313)
|+|+||++.+.|+..|+.+|+++++.++.||++|+
T Consensus 1 d~D~~F~~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~ 80 (198)
T cd07630 1 DVDEFFQKERDMNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENI 80 (198)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999998
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhcCCchhh-hhhhHHHHHH
Q psy17232 243 ----------------------DAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNVS-CIGDYDVWRT 294 (313)
Q Consensus 243 ----------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k~v~~~e~~~~-~~~~~e~~~~ 294 (313)
+|+|++|.+|.+++++|++|+++|+|+|++++++ +|.+++ |+.+||++..
T Consensus 81 ~~~a~~d~~~Lg~~L~~Y~r~i~a~K~~l~~R~~~~~~~~~a~k~l~Kar~~k~~~--ae~~~~~a~~~fe~iS~ 153 (198)
T cd07630 81 EVVAGNNENTLGLTLDLYSRYSESEKDMLFRRTCKLIEFENASKALEKAKPQKKEQ--AEEAKKKAETEFEEISS 153 (198)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHH--HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988875 667777 7789998844
No 71
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=99.35 E-value=6.1e-12 Score=104.83 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=81.4
Q ss_pred EEEeecceeeC---CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCcc---------ccCCCCCCCCCC
Q psy17232 35 IVDISDALSEK---EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAG---------YIIPPAPPRPDF 102 (313)
Q Consensus 35 ~V~Vsdp~k~g---~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg---------~iIPPlP~K~~~ 102 (313)
.|+|.|-+|.. ++..|.|..... .+..+.|.|||+||.-||..|.+. ||. ++||+||+|..+
T Consensus 3 ~~~v~~~ekr~~~~k~y~Y~i~V~~~----dg~~~~v~RrYs~F~~Lh~~L~~~--FP~eag~~~~~~r~lP~lP~k~~~ 76 (119)
T cd06888 3 DVKVIDVEKRRAPSKHYVYIINVTWS----DGSSNVIYRRYSKFFDLQMQLLDK--FPIEGGQKDPSQRIIPFLPGKILF 76 (119)
T ss_pred eEEEEEEEEEecCCCcEEEEEEEEEc----CCCEEEEEEeHHHHHHHHHHHHHh--CchhhccCCCCccccCCCCCCccc
Confidence 57788887664 478999998763 346789999999999999999996 997 489999999887
Q ss_pred cchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccCcccccccccc
Q psy17232 103 DSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHP-VFRLDHQFHVFLQY 171 (313)
Q Consensus 103 ~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP-~L~~d~~l~~FL~~ 171 (313)
+.+ .. .++++ +|+..|+.||+.|++.| .++.|+.+..|.+.
T Consensus 77 g~s--------------~~-----------~~~~e---~R~~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~p 118 (119)
T cd06888 77 RRS--------------HI-----------RDVAV---KRLKPIDEYCKALVRLPPHISQCDEVLRFFEA 118 (119)
T ss_pred Ccc--------------hh-----------HHHHH---HHHHHHHHHHHHHHcCCceeecCHHHHHhcCC
Confidence 421 00 13455 67889999999998775 68899999999764
No 72
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=99.29 E-value=2.1e-11 Score=112.57 Aligned_cols=103 Identities=17% Similarity=0.418 Sum_probs=87.0
Q ss_pred hhhhcccchhhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Q psy17232 190 LNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK--------------------------- 242 (313)
Q Consensus 190 l~~~~~~~~~~~~s~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k--------------------------- 242 (313)
+++++.++.. ++.++.++|+||++.+.|++.|+.+|+.+++.++.|+++|+
T Consensus 3 ~~~~~~~~~~--~~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~ 80 (234)
T cd07664 3 VNKAADAVNK--MTIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSR 80 (234)
T ss_pred hhHHHHHHHh--ccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHH
Confidence 4445544433 34789999999999999999999999999999999999998
Q ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------hh---
Q psy17232 243 --------------------------------------DAAKRLLYRRLRCLADYENANRNLERARTK-------NK--- 274 (313)
Q Consensus 243 --------------------------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~-------~k--- 274 (313)
+|+|.+|.+|.++|+.|++++.+|.|+|+. ++
T Consensus 81 ~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK 160 (234)
T cd07664 81 ALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDK 160 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Confidence 999999999999999999999999999876 22
Q ss_pred ------hhhcCCchhh-hhhhHHHHHH
Q psy17232 275 ------DVHAMPPNVS-CIGDYDVWRT 294 (313)
Q Consensus 275 ------~v~~~e~~~~-~~~~~e~~~~ 294 (313)
+|..++++.. ++.+||++..
T Consensus 161 ~~~~~~ev~~~e~~~~~a~~~fe~Is~ 187 (234)
T cd07664 161 LQQAKDEIKEWEAKVQQGERDFEQISK 187 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777 4478888755
No 73
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.22 E-value=7e-11 Score=106.52 Aligned_cols=95 Identities=24% Similarity=0.421 Sum_probs=87.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Q psy17232 204 HTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK----------------------------------------- 242 (313)
Q Consensus 204 ~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k----------------------------------------- 242 (313)
..++++|++|.++++|++.|+.+|+.+.+++.+|+++++
T Consensus 7 ~~~~~~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~ 86 (200)
T cd07624 7 YLLKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAAL 86 (200)
T ss_pred hhhcCCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999988
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhhhhcCCchhhhh-----hhHHHHHH
Q psy17232 243 ----------------------DAAKRLLYRRLRCLADYENANRNLERART-KNKDVHAMPPNVSCI-----GDYDVWRT 294 (313)
Q Consensus 243 ----------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~-~~k~v~~~e~~~~~~-----~~~e~~~~ 294 (313)
+++|.+|++|++++.+||.+.++|.+++. -.++|+.++++++|+ .++++|+.
T Consensus 87 ~~l~~~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~l~~ev~~a~~~~e~~~~~~~~E~~rF~~ 166 (200)
T cd07624 87 EVLLSDHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLELLKEVEKLQDKLECANADLKADLERWKQ 166 (200)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 477899999999977 88999998
Q ss_pred HHhh
Q psy17232 295 TRMQ 298 (313)
Q Consensus 295 ~~~~ 298 (313)
+|..
T Consensus 167 ~K~~ 170 (200)
T cd07624 167 NKRQ 170 (200)
T ss_pred HHHH
Confidence 6543
No 74
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=99.19 E-value=1.9e-10 Score=105.35 Aligned_cols=92 Identities=14% Similarity=0.371 Sum_probs=83.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------
Q psy17232 203 SHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK---------------------------------------- 242 (313)
Q Consensus 203 s~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k---------------------------------------- 242 (313)
++++.++|+||++.+.|++.|+.+|+.+++.++.|+++|+
T Consensus 4 ~~k~~E~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~ 83 (224)
T cd07623 4 TIKMDETDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIE 83 (224)
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999998
Q ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------hhhhhcCCc
Q psy17232 243 -------------------------DAAKRLLYRRLRCLADYENANRNLERARTK----------------NKDVHAMPP 281 (313)
Q Consensus 243 -------------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~----------------~k~v~~~e~ 281 (313)
+|+|++|..|.++++.|++|+..|.++|+. +++|..++.
T Consensus 84 ~~~~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~ 163 (224)
T cd07623 84 QLHGEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEA 163 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Confidence 899999999999999999999999999997 567777787
Q ss_pred hhh-hhhhHHHHHH
Q psy17232 282 NVS-CIGDYDVWRT 294 (313)
Q Consensus 282 ~~~-~~~~~e~~~~ 294 (313)
+++ +..+|+.+..
T Consensus 164 ~~~~a~~~fe~is~ 177 (224)
T cd07623 164 KVDRGQKEFEEISK 177 (224)
T ss_pred HHHHHHHHHHHHHH
Confidence 777 5578887744
No 75
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=99.19 E-value=2e-10 Score=104.56 Aligned_cols=83 Identities=22% Similarity=0.500 Sum_probs=74.4
Q ss_pred hHhhhhcccchhhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Q psy17232 188 GFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK------------------------- 242 (313)
Q Consensus 188 ~~l~~~~~~~~~~~~s~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k------------------------- 242 (313)
|+|++++.++... +++++++|+||.+.++|++.|+.+|+.+.+.+++|+++++
T Consensus 3 ~~~~~~~~s~~~~--~~~~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l 80 (236)
T PF09325_consen 3 GLFGKLFDSVSNS--SPKMKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSL 80 (236)
T ss_pred hHHHHHHHHHHcc--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchh
Confidence 5666666555544 3788999999999999999999999999999999999988
Q ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17232 243 ----------------------------------------DAAKRLLYRRLRCLADYENANRNLERARTK 272 (313)
Q Consensus 243 ----------------------------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~ 272 (313)
+++|++|.+|..++.+|++++..|+++|+.
T Consensus 81 ~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~ 150 (236)
T PF09325_consen 81 SEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQ 150 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 76
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.17 E-value=1.6e-10 Score=97.98 Aligned_cols=116 Identities=19% Similarity=0.255 Sum_probs=76.5
Q ss_pred eEEEeeccee--------eCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcc-
Q psy17232 34 LIVDISDALS--------EKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDS- 104 (313)
Q Consensus 34 l~V~Vsdp~k--------~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~- 104 (313)
|.+.|.|-+. .+.|..|+|..+. + ...|.|.|||+||.-||..|.. |...+--|||+|..-..
T Consensus 4 i~~~i~~~eR~~~~~~~~~~~~t~Y~I~v~~--g---~~~w~V~rRy~~F~~Lh~~L~~---~~~~~~~plP~k~~~~~r 75 (135)
T cd07296 4 IKARVLEVERFTSTSDVKKPSLNVYTIELTH--G---EFTWQVKRKFKHFQELHRELLR---YKAFIRIPIPTRSHTVRR 75 (135)
T ss_pred eEEEEEEEEEeeccccccccceEEEEEEEEe--C---CEEEEEEeehHHHHHHHHHHHh---cCCCCCCCCCcccchhhc
Confidence 5666766543 3358899998653 2 2489999999999999999997 55544446788764100
Q ss_pred -h-----HHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 105 -S-----REKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 105 -~-----~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
+ ...+-.++.+.++. .. .+.+. .|+..||.||+.|+.-|..++.+....||+.
T Consensus 76 ~~~~~~~~~~~p~lp~~~~~~----v~-------e~~~~---sRr~~LE~YL~~LL~~~~~Rn~~a~~eFLeV 134 (135)
T cd07296 76 QTIKRGEPRHMPSLPRGAEEE----AR-------EEQFS---SRRKQLEDYLSKLLKMPMYRNYHATMEFIDV 134 (135)
T ss_pred cccccccccccccCCCCCCcc----cc-------ccchH---HHHHHHHHHHHHHhcChhhcCCHHHHhheec
Confidence 0 00011122222110 10 12233 4777999999999999999999999999974
No 77
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=99.12 E-value=4e-10 Score=92.47 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=71.0
Q ss_pred cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhcCCCCCCCcHHHHHH
Q psy17232 47 KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIK 126 (313)
Q Consensus 47 yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~~~~~~~~~~e~f~~ 126 (313)
+..|.|.++..-. ...+.|.|||+||.-||..|... ||+.++|+||.|..++-+. .
T Consensus 16 ~y~Y~I~V~~~~~---~~~~~I~RrY~eF~~Lh~kLk~~--FP~~~lP~LP~k~~~g~s~--------------~----- 71 (109)
T cd07290 16 GYAYVVKVQREGH---KEATFVQRTFEEFQELHNKLRLL--FPSSKLPSFPSRFVIGRSR--------------G----- 71 (109)
T ss_pred cEEEEEEEEECCC---ceeEEEEeeHHHHHHHHHHHHHH--CccccCCCCCCCcccCccc--------------c-----
Confidence 5559999876311 12367999999999999999995 9999999999998874210 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccCcccccccccc
Q psy17232 127 MKQELEAEYLATFKKTVAMHEMFLTR-LAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 127 ~~~~~~~efie~rrkRr~~Le~FL~r-i~~HP~L~~d~~l~~FL~~ 171 (313)
.+-.| +|+..|+.||+. |...|.++.|+.+..|+..
T Consensus 72 ------~~vae---~R~~~L~~Yl~~Ll~~~~~Is~s~~v~~FF~p 108 (109)
T cd07290 72 ------EAVAE---RRKEELNGYIWHLIHAPPEVAECDLVYTFFHP 108 (109)
T ss_pred ------HHHHH---HHHHHHHHHHHHHHcCChheecCHHHHHhccc
Confidence 01233 678899999955 6788899999999999853
No 78
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=99.09 E-value=4.9e-10 Score=103.41 Aligned_cols=71 Identities=14% Similarity=0.301 Sum_probs=67.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Q psy17232 202 LSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK--------------------------------------- 242 (313)
Q Consensus 202 ~s~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k--------------------------------------- 242 (313)
++.++.++|+||++.+.|++.|+.+|+.+++.++.|+++|+
T Consensus 13 ~~~k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~~i 92 (234)
T cd07665 13 MTIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKI 92 (234)
T ss_pred cccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999998
Q ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17232 243 --------------------------DAAKRLLYRRLRCLADYENANRNLERARTK 272 (313)
Q Consensus 243 --------------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~ 272 (313)
+|+|.+|..|.+++..|.++...|.|+|..
T Consensus 93 ~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~ 148 (234)
T cd07665 93 EQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREA 148 (234)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999886
No 79
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.08 E-value=5.8e-10 Score=91.52 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=74.2
Q ss_pred EEeecceeeC---CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhc
Q psy17232 36 VDISDALSEK---EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKL 112 (313)
Q Consensus 36 V~Vsdp~k~g---~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~ 112 (313)
|+|-+-.|.. .+.+|.|.++..-. .....|.|||++|.-||..|... ||-+++|+||.|..++.+.
T Consensus 2 ~~V~~f~Kr~~p~k~yvY~i~V~~~~~---~~~~~I~Rry~eF~~Lh~kL~~~--Fp~~~lP~lP~k~~~grs~------ 70 (109)
T cd07289 2 VSVFTYHKRYNPDKHYIYVVRILREGQ---IEPSFVFRTFDEFQELHNKLSIL--FPLWKLPGFPNKMVLGRTH------ 70 (109)
T ss_pred cEEeeEEEEEcCCCeEEEEEEEEECCC---ceeEEEEeeHHHHHHHHHHHHHH--CCcccCCCCCCCeeeCCCc------
Confidence 3444444333 35799999876311 11255999999999999999996 9999999999998774210
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccCccccccccc
Q psy17232 113 GEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQ-HPVFRLDHQFHVFLQ 170 (313)
Q Consensus 113 ~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~-HP~L~~d~~l~~FL~ 170 (313)
. + +=.| +|+..|+.||+.|.+ .|.++.++.+..|+.
T Consensus 71 ------~-~------------~vae---~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~ 107 (109)
T cd07289 71 ------I-K------------DVAA---KRKVELNSYIQSLMNSSTEVAECDLVYTFFH 107 (109)
T ss_pred ------c-h------------HHHH---HHHHHHHHHHHHHHcCChhhhcChHHHHhcc
Confidence 0 0 1123 688899999999975 557999999988875
No 80
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=99.04 E-value=1.7e-09 Score=98.53 Aligned_cols=87 Identities=11% Similarity=0.287 Sum_probs=76.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q psy17232 208 DHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK--------------------------------------------- 242 (313)
Q Consensus 208 d~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k--------------------------------------------- 242 (313)
++|+||.+.+.|++.|+.+|+.+.+.++.|+++|+
T Consensus 1 e~D~~F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~ 80 (216)
T cd07627 1 EPDEWFIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLER 80 (216)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999998
Q ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------hhhhhcCCchhh
Q psy17232 243 --------------------DAAKRLLYRRLRCLADYENANRNLERARTK------------------NKDVHAMPPNVS 284 (313)
Q Consensus 243 --------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~------------------~k~v~~~e~~~~ 284 (313)
+|+|++|.+|.+++.+|++++.+|.|+|.+ .++|+.++.+++
T Consensus 81 ~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~ 160 (216)
T cd07627 81 QALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRAS 160 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999842 446666777777
Q ss_pred -hhhhHHHHHH
Q psy17232 285 -CIGDYDVWRT 294 (313)
Q Consensus 285 -~~~~~e~~~~ 294 (313)
+..+||.+..
T Consensus 161 ~a~~~~e~is~ 171 (216)
T cd07627 161 ELKKEFEEVSE 171 (216)
T ss_pred HHHHHHHHHHH
Confidence 5578887744
No 81
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=98.86 E-value=2.3e-08 Score=90.41 Aligned_cols=94 Identities=14% Similarity=0.249 Sum_probs=85.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------
Q psy17232 204 HTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK----------------------------------------- 242 (313)
Q Consensus 204 ~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k----------------------------------------- 242 (313)
.+++.+|++|.++++|++.|..+|..+.++..|++++..
T Consensus 7 ~~~~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~ 86 (201)
T cd07622 7 FRLRNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASI 86 (201)
T ss_pred ccCCCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999998876
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhhhcCCchhhhh-----hhHHHHHHH
Q psy17232 243 ---------------------DAAKRLLYRRLRCLADYENANRNLERARTK-NKDVHAMPPNVSCI-----GDYDVWRTT 295 (313)
Q Consensus 243 ---------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~-~k~v~~~e~~~~~~-----~~~e~~~~~ 295 (313)
+++|.+|++|+.++.+||.+..+|.+++.+ ..+|+.+.+..+|+ .++++|+..
T Consensus 87 ~~~~~~~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~l~~~ve~a~~~~e~f~~~~~~E~~rF~~~ 166 (201)
T cd07622 87 DNGLEDEELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQGEEAVKEAKDELNEFVKKALEDVERFKKQ 166 (201)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999887 55888888888876 899999885
Q ss_pred Hh
Q psy17232 296 RM 297 (313)
Q Consensus 296 ~~ 297 (313)
|.
T Consensus 167 K~ 168 (201)
T cd07622 167 KV 168 (201)
T ss_pred HH
Confidence 54
No 82
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.73 E-value=8.7e-08 Score=85.52 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=77.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q psy17232 208 DHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK--------------------------------------------- 242 (313)
Q Consensus 208 d~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k--------------------------------------------- 242 (313)
++|++|.++++|+.+|+.+|..+.+++.|+++++.
T Consensus 1 ~~d~~F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l 80 (185)
T cd07628 1 KPDKEFLEIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVL 80 (185)
T ss_pred CCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999887
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhcCCchhhhh-----hhHHHHHHHHhh
Q psy17232 243 -------------------DAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNVSCI-----GDYDVWRTTRMQ 298 (313)
Q Consensus 243 -------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k~v~~~e~~~~~~-----~~~e~~~~~~~~ 298 (313)
+++|.+|+.|.+++.+||.+.++| ..++|+.+.+..+|+ .++++|+..|.+
T Consensus 81 ~~~~~~~f~~~Lkd~~~y~~s~k~~lk~R~~kq~d~e~l~e~l-----l~~~ve~a~~~~e~f~~~~~~E~~rF~~~k~~ 155 (185)
T cd07628 81 NKYTDENYLTSLKDLLHYILSLKNLIKLRDQKQLDYEELSDYL-----LTDEVENAKETSDAFNKEVLKEYPNFERIKKQ 155 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999 455888888888876 899999885543
No 83
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=98.64 E-value=2.3e-07 Score=77.56 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=75.9
Q ss_pred EEEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCcc---------ccCCCCCCCCCCcch
Q psy17232 35 IVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAG---------YIIPPAPPRPDFDSS 105 (313)
Q Consensus 35 ~V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg---------~iIPPlP~K~~~~~~ 105 (313)
.|..-+-++-...-+|-|..+.. .++++.|.|||+||.-||.+|.++ ||. +|||.||.+..++..
T Consensus 7 ~v~~~g~~k~~~h~~Y~i~V~ws----dgs~~~iyR~y~eF~~lh~~L~~~--FP~EaG~~~~~~riLP~lP~~~~~~~~ 80 (121)
T cd06889 7 DVQGVGVMQKRRHKTYMFSVLWS----DGSELFVYRSLEEFRKLHKQLKEK--FPVEAGLLRSSDRVLPKFKDAPSLGSL 80 (121)
T ss_pred EEEEEeeecccceeEEEEEEEEc----CCcEEEEEEEHHHHHHHHHHHHHH--CCcccCCCCCCCcccCCCCCCcccCCc
Confidence 34444445544556788887653 467899999999999999999996 874 799999999887521
Q ss_pred HHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccCcccccccccc
Q psy17232 106 REKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHP-VFRLDHQFHVFLQY 171 (313)
Q Consensus 106 ~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP-~L~~d~~l~~FL~~ 171 (313)
| ... +.. + +|+..|+.|++.|++-| .+++|+.+..|...
T Consensus 81 --~--------~~~---~~a-----------~---~R~~~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p 120 (121)
T cd06889 81 --K--------GST---SRS-----------L---ARLKLLETYCQELLRLDEKVSRSPEVIQFFAP 120 (121)
T ss_pred --c--------ccc---chH-----------H---HHHHHHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence 0 000 001 1 47778999999998665 69999999998753
No 84
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=98.57 E-value=2.5e-07 Score=77.48 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=77.4
Q ss_pred ceEEEeecceeeCC------cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCcc-ccCCCCCCCCCCcch
Q psy17232 33 VLIVDISDALSEKE------KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAG-YIIPPAPPRPDFDSS 105 (313)
Q Consensus 33 ~l~V~Vsdp~k~g~------yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg-~iIPPlP~K~~~~~~ 105 (313)
.|.|.|.|.+..+. ...|+|..... ...|.|.|||.+|.-||..|.. |.. .-|||+|....--..
T Consensus 3 pi~~~V~~~er~~s~s~~~~~~lYtIeltHG-----~F~W~IkRryKhF~~LHr~L~~---~k~~~~~~P~~~~~~~r~~ 74 (130)
T cd07297 3 PVTAKVENTERYTTGSKVHVCTLYTVRLTHG-----EFTWTVKKKFKHFQELHRDLYR---HKVMLSFLPLGRFAIQHRQ 74 (130)
T ss_pred ceEEEEEEEEEeecccccccceeEEEEEecC-----ceEEEEEehhhhHHHHHHHHHH---HHHhhhcCCchhhhhhhcc
Confidence 47888888876543 26899987542 2589999999999999999998 655 446788844321100
Q ss_pred -----HHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccc
Q psy17232 106 -----REKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQY 171 (313)
Q Consensus 106 -----~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~ 171 (313)
...+-.+..+.+. . . +=+. .|+..||.||++|+..|..++.+....||+.
T Consensus 75 ~~~~~~~~mP~LP~~~~~-----~-~-------~~~~---sr~kqLE~YLn~LL~~~~YRn~~atleFLeV 129 (130)
T cd07297 75 QLEGLTEEMPSLPGTDRE-----A-S-------RRTA---SKPKYLENYLNNLLENSFYRNYHAMMEFLAV 129 (130)
T ss_pred ccccccCcCCCCCCCCch-----h-h-------hhhh---hHHHHHHHHHHHHhcchhhcCChhheeeeec
Confidence 0111122222111 1 1 1122 3667899999999999999999999999974
No 85
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.33 E-value=5.2e-06 Score=73.87 Aligned_cols=65 Identities=20% Similarity=0.426 Sum_probs=61.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q psy17232 208 DHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK--------------------------------------------- 242 (313)
Q Consensus 208 d~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k--------------------------------------------- 242 (313)
++|++|.+.++|+..|+.+|+.+++.+++++++++
T Consensus 1 e~d~~f~~~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (218)
T cd07596 1 EEDQEFEEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLS 80 (218)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999987
Q ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17232 243 ----------------------DAAKRLLYRRLRCLADYENANRNLERARTK 272 (313)
Q Consensus 243 ----------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~ 272 (313)
.++|++|.+|..++.+|+.+.+.+.+++.+
T Consensus 81 ~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~ 132 (218)
T cd07596 81 EAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQ 132 (218)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999765
No 86
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=98.27 E-value=3.6e-06 Score=67.64 Aligned_cols=98 Identities=13% Similarity=0.178 Sum_probs=70.5
Q ss_pred EEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhcCCC
Q psy17232 36 VDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEG 115 (313)
Q Consensus 36 V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~~~~ 115 (313)
|+|-.-.|..+|+ |-|.+.-. ...+.-|.|+|.+|--||.+|... ||+.++|-+|.+-.++-+
T Consensus 2 ~~i~~f~k~~s~l-Y~i~V~~s----d~~~t~v~Rs~eeF~eLH~~L~~~--FP~~~LP~fP~~~~~~~~---------- 64 (101)
T cd06896 2 ATILGFSKKSSNL-YLVQVTQS----CNLVSLTEKSFEQFSELHSQLQKQ--FPSLALPEFPHWWHLPFT---------- 64 (101)
T ss_pred ceEEEeecccceE-EEEEEEEe----CCCcceeeecHHHHHHHHHHHHHH--CccccccCCCCccccCcc----------
Confidence 3444445555554 66665321 136677999999999999999995 999999999999654310
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccCcccccccccc
Q psy17232 116 EGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQH-PVFRLDHQFHVFLQY 171 (313)
Q Consensus 116 ~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~H-P~L~~d~~l~~FL~~ 171 (313)
. . +. +|...|+.||+.|.+- |.+++++.+..|..+
T Consensus 65 -----~--~------------~~--~R~~~L~~Yl~~Ll~~~~eVa~sd~v~sFF~~ 100 (101)
T cd06896 65 -----D--S------------DH--KRVRDLNHYLEQLLSGSREVANSDCVLSFFLS 100 (101)
T ss_pred -----c--H------------HH--HHHHHHHHHHHHHHccCHHHhcchHHHHHhhc
Confidence 0 0 01 5777999999999754 579999988888643
No 87
>KOG1259|consensus
Probab=98.24 E-value=2e-06 Score=82.31 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=67.5
Q ss_pred EeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhcCCCC
Q psy17232 37 DISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGE 116 (313)
Q Consensus 37 ~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~~~~~ 116 (313)
.|++....|.|..|.|.+.. ...+|.|.|||+||.-||++|+.. -.+----||||.+++. +
T Consensus 17 ~~~~~~~~~~~t~y~i~v~~-----g~~ew~v~~ry~df~~lheklv~e---~~i~k~llppkk~ig~----------~- 77 (490)
T KOG1259|consen 17 KFSNESSSGGVTYYDIKVRV-----GKVEWLVERRYRDFANLHEKLVGE---ISISKKLLPPKKLVGN----------K- 77 (490)
T ss_pred ccccccccCceEEEEEEEEe-----cceeeeehhhhhHHHHHHHHhhhh---heeccccCCchhhcCC----------C-
Confidence 44555666778999998764 457999999999999999999873 2233345888987642 1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccCccccccccccc
Q psy17232 117 GTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQ-HPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 117 ~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~-HP~L~~d~~l~~FL~~~ 172 (313)
++.|+| +|+..||.||+.+.. -|. -.-..+..||...
T Consensus 78 ---------------~~s~~e---~r~~~leiylq~ll~~f~~-~~pr~la~fl~f~ 115 (490)
T KOG1259|consen 78 ---------------QPSFLE---QRREQLEIYLQELLIYFRT-ELPRALAEFLDFN 115 (490)
T ss_pred ---------------ChhHHH---HHHHHHHHHHHHHHHHccc-cCHHHHHHHhccc
Confidence 246888 677789999999863 332 1223445555443
No 88
>KOG3784|consensus
Probab=98.15 E-value=3e-06 Score=82.72 Aligned_cols=87 Identities=20% Similarity=0.346 Sum_probs=72.8
Q ss_pred CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhcCCCCCCCcHHHHH
Q psy17232 46 EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFI 125 (313)
Q Consensus 46 ~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~~~~~~~~~~e~f~ 125 (313)
-|++|.|+.. +.+.+.+||+.+..||+.|... |-|+.+|+.|+|..|..+ +
T Consensus 16 ~ytaynih~n--------G~~~~~~r~s~~~~l~~~lr~~--~~~~~~p~~p~k~~f~L~---------------~---- 66 (407)
T KOG3784|consen 16 RYTAYNIHIN--------GRQHGSVRYSQLVELHEQLKKH--FYDYCLPQFPPKKLFKLT---------------P---- 66 (407)
T ss_pred cccceeeeec--------ceeEEEEehHHHHhHHHHHHHH--hhcccCCCCCcccccCCC---------------h----
Confidence 3899999974 5667889999999999999985 888999999999987432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 126 KMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 126 ~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
.=++ .||..||.||+.+++||.+..+..+..||...
T Consensus 67 --------~~~~---~rr~~leqylqa~~q~~~l~~s~~~~~fL~~~ 102 (407)
T KOG3784|consen 67 --------QQLD---SRRRGLEQYLQAVCQDPVLARSELVQKFLMRA 102 (407)
T ss_pred --------hhhH---HHHHHHHHHHHHHhcCccccchhhhhHHHHhc
Confidence 1123 46779999999999999999999999999764
No 89
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.96 E-value=6.4e-05 Score=67.31 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=70.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--------------------------------------------
Q psy17232 208 DHNDFFENENNFLHEYHNHLK-EATTRADRMTFKRK-------------------------------------------- 242 (313)
Q Consensus 208 d~D~~F~~~k~~l~~l~~~L~-~l~~~~~~lv~~~k-------------------------------------------- 242 (313)
++|++|.+.+.++.+|+..|. .+.+...+++++..
T Consensus 1 ~~d~~F~~~e~~~~~~~~~L~~~l~kv~~Ri~k~~~~l~~dl~elG~~fn~ls~~E~~~~L~~~le~~g~a~D~~~~~~~ 80 (187)
T cd07629 1 EPDDEFTDIEAETKKYEQLLHGGMEKVNRRITKRLGDLAEDMADLGGRFNAFSLEEQKSELAEALEKVGQAVDSTYLATE 80 (187)
T ss_pred CcchHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999995 79999999988776
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh-hcCCchhhhh-----hhHHHHHHH
Q psy17232 243 ---------------------DAAKRLLYRRLRCLADYENANRNLERARTKNKDV-HAMPPNVSCI-----GDYDVWRTT 295 (313)
Q Consensus 243 ---------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k~v-~~~e~~~~~~-----~~~e~~~~~ 295 (313)
+++|.+|+.|..++.+|+...+.| +.++ ++.++-..|+ ++++||+.+
T Consensus 81 ~l~~~l~~~f~EpL~E~~~y~~s~k~vlk~R~~K~~Q~e~l~~~L------~e~~~~~~~~~~~~~~~~~~~el~rF~~e 154 (187)
T cd07629 81 ALVGSLYYNINEPLSESAQFAGVVRELLKYRKLKHVQYEMTKDSL------LESALVAASDDLVISSTIKQKDLPRFQRE 154 (187)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999988 2222 4444555565 899999985
Q ss_pred HhhhccC
Q psy17232 296 RMQTGIW 302 (313)
Q Consensus 296 ~~~~~~~ 302 (313)
+ +.|+.
T Consensus 155 k-~~dl~ 160 (187)
T cd07629 155 R-EADLR 160 (187)
T ss_pred h-HHHHH
Confidence 4 44443
No 90
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.23 E-value=0.0025 Score=58.96 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=57.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------
Q psy17232 205 TVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK------------------------------------------ 242 (313)
Q Consensus 205 ~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k------------------------------------------ 242 (313)
+.-|+.++..+.+--+..+...-+++...+++++++++
T Consensus 12 ~p~d~~~el~~~rp~vk~~y~~~~~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E~~~~L~~a~~kLg~v~~~v~dl 91 (230)
T cd07625 12 PPYDEYTELAEFRPLVKSIYLTAQDLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEETHHGLGNLYEKFGKVLTAVGDI 91 (230)
T ss_pred cCCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhH
Confidence 34466778888888888888888888888888888877
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17232 243 -----------------------DAAKRLLYRRLRCLADYENANRNLERARTK 272 (313)
Q Consensus 243 -----------------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~ 272 (313)
.++|+.|..|..++.+|.+|+.++.+|+..
T Consensus 92 ~~~QA~~d~~tl~d~L~~~~~~~~~vKealtnR~~~~re~~qAq~~~~~K~~~ 144 (230)
T cd07625 92 DSIQATVDMATLYDGLEWISRDAYVVKEALTNRHLLMRELIQAQQNTKSKQEA 144 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999775
No 91
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=97.12 E-value=0.0035 Score=51.56 Aligned_cols=66 Identities=17% Similarity=0.320 Sum_probs=44.4
Q ss_pred cCCCCCceEEEeecc----eeeC---CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhh-c--cCccccCCCC
Q psy17232 27 IDLNDNVLIVDISDA----LSEK---EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEEN-E--AYAGYIIPPA 96 (313)
Q Consensus 27 ~~l~~~~l~V~Vsdp----~k~g---~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~-~--~~pg~iIPPl 96 (313)
||+| .|++...|- .+.| +-..|.|.... ++..|.|.|+|.||..|-+.|-.+ | .|.+ +++|
T Consensus 2 Vd~G--~lq~~L~~~~~e~~~~~~~~~e~~~~v~v~C-----qgrsw~VkRSyEdfr~LD~~LHrCvyDRrfS~--L~eL 72 (115)
T cd07298 2 VDFG--SIQLSLGEEQNEVMRNGCESKELVYLVQIAC-----QGRSWIVKRSYEDFRVLDKHLHLCIYDRRFSQ--LPEL 72 (115)
T ss_pred Cccc--ceeeecccCccchhccCCCCCCeEEEEEEEe-----CCCceEEEeeHHHHHHHHHHHHHHHHhhhhhc--cccC
Confidence 5555 366666543 2333 34777777643 457999999999999998888765 1 2333 8899
Q ss_pred CCCCC
Q psy17232 97 PPRPD 101 (313)
Q Consensus 97 P~K~~ 101 (313)
|+...
T Consensus 73 p~~~~ 77 (115)
T cd07298 73 PRSDS 77 (115)
T ss_pred CCccc
Confidence 99864
No 92
>KOG2101|consensus
Probab=96.97 E-value=0.0014 Score=63.89 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=65.2
Q ss_pred CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccC-ccccCCCCCCCCCCcchHHHHhhcCCCCCCCcHHHH
Q psy17232 46 EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAY-AGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEF 124 (313)
Q Consensus 46 ~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~-pg~iIPPlP~K~~~~~~~~K~~~~~~~~~~~~~e~f 124 (313)
.|++|+|++...-.......+.|+|||+||.-||.+|.+. | |...+|. |.+.. ....
T Consensus 134 ~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~~--~~~~~~~~~-~~~~~-------------------~~~~ 191 (362)
T KOG2101|consen 134 SFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKRQ--FNPALRFPG-PKFRN-------------------EIQK 191 (362)
T ss_pred ceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHHh--cCccccCCC-ccchh-------------------HHHH
Confidence 5999999987543222234689999999999999999996 6 4444331 11110 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCCccCccccc
Q psy17232 125 IKMKQELEAEYLATFKKTVAMHEMFL--TRLAQHPVFRLDHQFH 166 (313)
Q Consensus 125 ~~~~~~~~~efie~rrkRr~~Le~FL--~ri~~HP~L~~d~~l~ 166 (313)
....++|+..++. .|+..++.|| +-...||.+.++..+.
T Consensus 192 ~~~~~~~~~~~~~---~r~~~~~~fl~~~f~~~~~~~~~~~~~~ 232 (362)
T KOG2101|consen 192 KKLLGNFDADVIP---ERSEALEEFLSLQFKDSKPSNVNCKKVM 232 (362)
T ss_pred HHhhccchhhhhh---hhhhhHHHHHHhhhhhccccccchHHhh
Confidence 1123566778888 5778999999 8888888888877555
No 93
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=96.33 E-value=0.037 Score=45.45 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=46.0
Q ss_pred cCCCCCceEEEeecceeeC------CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccC--ccccCCCCCC
Q psy17232 27 IDLNDNVLIVDISDALSEK------EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAY--AGYIIPPAPP 98 (313)
Q Consensus 27 ~~l~~~~l~V~Vsdp~k~g------~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~--pg~iIPPlP~ 98 (313)
||.| .||+.++|-.... +-..|.|.... ++..|.|.|.|.||..|-+.|-.+ .| ...-.++||+
T Consensus 2 Vd~G--~iQ~~l~~~~~~~~~~~~~k~~~~~v~V~c-----qg~sW~VkRSyEdfr~LD~~LHrC-iyDRr~S~L~eL~~ 73 (114)
T cd07278 2 VDIG--SLQVVLSDDGSLKSYKNSGKELVYLVQVQC-----QGKSWLVKRSYDDFRMLDKHLHQC-IYDRKFSQLTELPE 73 (114)
T ss_pred cccc--ceEEEeccCcccCCCCCCCCceEEEEEEEe-----CCcceEEEeeHHHHHHHHHHHHHH-HHhhhhhccccCCc
Confidence 4555 5888887754442 24788887653 458899999999999998888775 33 2234677777
Q ss_pred CC
Q psy17232 99 RP 100 (313)
Q Consensus 99 K~ 100 (313)
-.
T Consensus 74 ~~ 75 (114)
T cd07278 74 EC 75 (114)
T ss_pred cc
Confidence 54
No 94
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=96.02 E-value=0.046 Score=44.74 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=34.5
Q ss_pred cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccC--ccccCCCCCCCC
Q psy17232 47 KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAY--AGYIIPPAPPRP 100 (313)
Q Consensus 47 yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~--pg~iIPPlP~K~ 100 (313)
...|.|...- +++.|.|.|.|.||..|-+.|-.+ .| ...-+++||+-.
T Consensus 25 ~~~flv~V~c-----qgrsW~v~RSyEdfr~LD~~LHrC-iyDRr~S~L~eL~~~~ 74 (113)
T cd07299 25 DLVFLVQVTC-----QGRSWMVLRSYEDFRTLDAHLHRC-IFDRRFSQLLELPPLC 74 (113)
T ss_pred ceEEEEEEEe-----cCcceEEeeeHHHHHHHHHHHHHH-HHhhhhhhhhccCccc
Confidence 5788887642 357899999999999998888765 23 223356777663
No 95
>KOG4773|consensus
Probab=95.66 E-value=0.016 Score=56.27 Aligned_cols=103 Identities=19% Similarity=0.261 Sum_probs=73.8
Q ss_pred ceEEEeecceeeCC---cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCcc---------ccCCCCCCCC
Q psy17232 33 VLIVDISDALSEKE---KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAG---------YIIPPAPPRP 100 (313)
Q Consensus 33 ~l~V~Vsdp~k~g~---yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg---------~iIPPlP~K~ 100 (313)
.+.+.|.+.+++.. ...|-|..++ |...+..|.|||-+|..++..|.++ +++ |++|+||.+.
T Consensus 21 ~~~~kvi~~eke~~f~~hFvyVievkw----~~~se~vVyrry~E~~~~tkklee~--f~~ss~k~t~l~~n~p~LpA~v 94 (386)
T KOG4773|consen 21 AIPAKVIDAEKERSFTSHFVYVIEVKW----YGGSEGVVYRRYFEFHALTKKLEER--FGPSSGKSTALACNLPTLPAIV 94 (386)
T ss_pred cchHHHHhHHHhcccchheEEEEEehh----hccccceeeeehhhhhhhcchHhhc--CCCcccccCchhccCCCCccee
Confidence 35566667776654 4677777665 6677999999999999999999986 543 6799999998
Q ss_pred CCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccCcccccccccc
Q psy17232 101 DFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPV-FRLDHQFHVFLQY 171 (313)
Q Consensus 101 ~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~-L~~d~~l~~FL~~ 171 (313)
.|+. +.+... .|-..|..|..-+.+-|+ ...++.|..|.-.
T Consensus 95 ~fdf----------------kqe~Ae--------------~r~~~ln~y~e~LlslPi~~l~~p~l~~fffv 136 (386)
T KOG4773|consen 95 YFDF----------------KQEIAE--------------ERIPALNAYCEWLLSLPIGRLGGPGLRPFFFV 136 (386)
T ss_pred Eech----------------hhhhhh--------------hhhHHHHHHHHHHHhcchhhcCCCCceeeeee
Confidence 8752 112222 245567889999999997 3456666666543
No 96
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.75 E-value=0.28 Score=44.85 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17232 210 NDFFENENNFLHEYHNHLKEATTRADRMTFKRK 242 (313)
Q Consensus 210 D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k 242 (313)
|...--+.+||..++.+|++++..+..++++++
T Consensus 3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~ 35 (211)
T cd07598 3 DNQTKFIQERITNVEKHFGELCQDFAAYTRKTA 35 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666788999999999999999999998876
No 97
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=93.33 E-value=0.94 Score=41.70 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hhhhcCCchhh-hhhhHHHHHH
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLERARTKN----KDVHAMPPNVS-CIGDYDVWRT 294 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~----k~v~~~e~~~~-~~~~~e~~~~ 294 (313)
..++..+..|.+++.+|+.+...++|.+.+. ..+.++|.+++ +.+.|+..+.
T Consensus 109 ~~i~k~IkKR~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~ 165 (224)
T cd07591 109 PEINEAIKKRNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLND 165 (224)
T ss_pred hhHHHHHHHHHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999988888876543 45667777777 5588988876
No 98
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=92.95 E-value=1.5 Score=40.29 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh----hhhcCCchhh-hhhhHHHHHH
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLERARTKNK----DVHAMPPNVS-CIGDYDVWRT 294 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k----~v~~~e~~~~-~~~~~e~~~~ 294 (313)
..++..+..|.+++.+|..+...+.+.+.+.+ .+..+|.+++ +.+.||..+.
T Consensus 104 ~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~~ye~lN~ 160 (211)
T cd07612 104 PDVKERVAKRGRKLVDYDSARHHLEALQNAKKKDDAKIAKAEEEFNRAQVVFEDINR 160 (211)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999888888876533 5677888888 5699999887
No 99
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=92.87 E-value=1.6 Score=39.94 Aligned_cols=53 Identities=25% Similarity=0.368 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hhhhcCCchhh-hhhhHHHHHHH
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLERARTKN----KDVHAMPPNVS-CIGDYDVWRTT 295 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~----k~v~~~e~~~~-~~~~~e~~~~~ 295 (313)
..++..+..|.+++.||..+...+++-+.+. ..+..+|++++ +.++||..+..
T Consensus 104 ~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~~kde~KL~kae~el~~Ak~~Ye~lN~~ 161 (211)
T cd07588 104 PEVKKRIAKRGRKLVDYDSARHNLEALKAKKKVDDQKLTKAEEELQQAKKVYEELNTE 161 (211)
T ss_pred HHHHHHHHHHhhHHHhHHHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999999999888876653 35567888888 55999998773
No 100
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=91.89 E-value=2.2 Score=39.45 Aligned_cols=53 Identities=15% Similarity=0.291 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch------hhhhcCCchhh-hhhhHHHHHHH
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLERARTKN------KDVHAMPPNVS-CIGDYDVWRTT 295 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~------k~v~~~e~~~~-~~~~~e~~~~~ 295 (313)
..++..+.+|.+++.+|+.+...+.|.+.+. ..+..+|..++ +.+.||..+..
T Consensus 108 ~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~ 167 (225)
T cd07590 108 PSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIK 167 (225)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999988888877652 45677777777 55999998873
No 101
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=91.63 E-value=2.2 Score=38.68 Aligned_cols=52 Identities=13% Similarity=0.322 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhcc-------hhhhhcCCchhh-hhhhHHHHHH
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLER-ARTK-------NKDVHAMPPNVS-CIGDYDVWRT 294 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k-~r~~-------~k~v~~~e~~~~-~~~~~e~~~~ 294 (313)
..++..+..|.+++.||+.+...+++ .+.+ .+.+..++.+++ +.++|+..+.
T Consensus 110 ~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~ 170 (216)
T cd07599 110 KKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNE 170 (216)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788899999999999999998888 4433 345677778888 5589998876
No 102
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=90.98 E-value=3.5 Score=36.13 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-hhhcCCchhh-hhhhHHHHHH
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLERARTKNK-DVHAMPPNVS-CIGDYDVWRT 294 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k-~v~~~e~~~~-~~~~~e~~~~ 294 (313)
..++.++..|..+..+|+.+...+.+.+.+.. ... +.+++ +..+|+..+.
T Consensus 131 ~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~--~~~l~~a~~~f~~~~~ 182 (229)
T PF03114_consen 131 KEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSK--EEKLEEAKEEFEALNE 182 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHH--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--HHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999875322 111 44454 5577776655
No 103
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=90.88 E-value=3.5 Score=37.83 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hhhhcCCchhhhh-hhHHHHHH
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLERARTKN----KDVHAMPPNVSCI-GDYDVWRT 294 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~----k~v~~~e~~~~~~-~~~e~~~~ 294 (313)
..++..+..|.+++.+|..+...+.|.+.+. +.+..+|.+++.+ +.||..+.
T Consensus 104 ~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~ 160 (211)
T cd07611 104 PDIKNRIAKRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNV 160 (211)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999998887652 3567788888844 89998876
No 104
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=86.82 E-value=8.5 Score=34.94 Aligned_cols=53 Identities=2% Similarity=0.134 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhcCCchhh---hh--hhHHHHHHH
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNVS---CI--GDYDVWRTT 295 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k~v~~~e~~~~---~~--~~~e~~~~~ 295 (313)
+++++++..+..+++.+..+.+..+--|..+.+++..+.+.+ ++ +.++++..+
T Consensus 108 ~~~pdi~~~~k~al~K~kE~~r~~~egk~~~~e~~ev~~r~d~IS~~~~aE~~~F~~e 165 (199)
T cd07626 108 STFPDIIGVHKGAVQKVKECERLVDEGKMSSAELEEVKRRTDVISYALLAEINHFHRE 165 (199)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788877777777776666555444444444444333333 22 666676663
No 105
>KOG0905|consensus
Probab=86.72 E-value=2.2 Score=47.86 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=75.7
Q ss_pred CCceEEEeecceeeCC---cEEEEEEeee-cccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchH
Q psy17232 31 DNVLIVDISDALSEKE---KVKFTVHTKK-KEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSR 106 (313)
Q Consensus 31 ~~~l~V~Vsdp~k~g~---yv~Y~V~tkt-~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~ 106 (313)
.....|.|--.+|+-. +.-|.|.+.. +-+ ...-+.|-|.+|.-||++|.. .||..-+|-.|..-.++-+.
T Consensus 1373 gRi~~v~v~~f~K~~~pnK~YmYvveV~r~n~~----e~s~i~RsF~EF~ElH~KL~~--~Fp~~~Lp~fP~~~~~grsn 1446 (1639)
T KOG0905|consen 1373 GRISEVTVLKFEKHYSPNKIYMYVVEVTRENQA----EPSFIFRSFEEFQELHNKLRA--RFPSMKLPSFPHRIHLGRSN 1446 (1639)
T ss_pred CceEEEEEEEeeeeccCCceEEEEEEEEecCCC----CchHHHHhHHHHHHHHHHHHH--hCccccCCCCCceeeecccc
Confidence 3456888887777642 4568887543 211 122378999999999999999 49999999999887664321
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccCcccccccccc
Q psy17232 107 EKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQH-PVFRLDHQFHVFLQY 171 (313)
Q Consensus 107 ~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~H-P~L~~d~~l~~FL~~ 171 (313)
.| =+++ ||...|+.||..|.+- +....++.+..|.-.
T Consensus 1447 ik--------------------------aVA~--kR~~~ln~yl~~L~nas~EVa~cDlVyTFFhp 1484 (1639)
T KOG0905|consen 1447 IK--------------------------AVAE--KRIIELNKYLISLFNASDEVAHCDLVYTFFHP 1484 (1639)
T ss_pred hh--------------------------HHHH--HHHHHHHHHHHHHhcCCchhhccceeeeeech
Confidence 11 1222 6778899999999754 467778877777654
No 106
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=86.63 E-value=6.5 Score=35.27 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhcCCchhh-hhhhHHHHHH
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNVS-CIGDYDVWRT 294 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k~v~~~e~~~~-~~~~~e~~~~ 294 (313)
..++.++..|..++.||+.....+++ +..++.+++ +.++|+..+.
T Consensus 102 ~~~~k~I~KR~~KllDYdr~~~~~~k-------~~k~e~~l~~a~~~y~~lN~ 147 (195)
T cd07589 102 SGPQKLIQKRYDKLLDYERYKEKKER-------GGKVDEELEEAANQYEALNA 147 (195)
T ss_pred HhHHHHHHHHhhhhccHHHHHHHHHh-------hcchHHHHHHHHHHHHHHHH
Confidence 67788999999999999987776655 445666666 4488887765
No 107
>KOG3771|consensus
Probab=84.41 E-value=6.2 Score=40.08 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHhhcc-hhhhhcCCchhhhh-hhHHHHHH
Q psy17232 243 DAAKRLLYRRLRCLADYENAN---RNLERARTK-NKDVHAMPPNVSCI-GDYDVWRT 294 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~---~~L~k~r~~-~k~v~~~e~~~~~~-~~~e~~~~ 294 (313)
-.++..+.+|.++++||..+. +.|++++.+ .++..++|.+++.+ +.||..++
T Consensus 122 pdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~kd~~k~~KAeeEl~~Aq~~fE~lN~ 178 (460)
T KOG3771|consen 122 PDIKKAIAKRGRKLVDYDSARHSFEKLQAKKKKDEAKLAKAEEELEKAQQVFEELNN 178 (460)
T ss_pred hhHHHHHHhhcchhhhhHHHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999988 455554422 44666677777744 78887776
No 108
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=82.09 E-value=7 Score=36.35 Aligned_cols=35 Identities=11% Similarity=0.200 Sum_probs=29.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17232 208 DHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK 242 (313)
Q Consensus 208 d~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k 242 (313)
+....|...++||..+..++.+++..+++++++.+
T Consensus 19 ~~~~~~~~~r~~I~~l~~~~~~l~~l~er~~kR~~ 53 (246)
T cd07597 19 DFQEQWANSRERIRRLLESWTKLRVLAERYEKRSQ 53 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568888899999999999999999998888776
No 109
>smart00721 BAR BAR domain.
Probab=80.09 E-value=23 Score=31.65 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-----hhhcCCchhh-hhhhHHHHHH
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLERARTKNK-----DVHAMPPNVS-CIGDYDVWRT 294 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k-----~v~~~e~~~~-~~~~~e~~~~ 294 (313)
..++.....|.+...+|+.+...+.+++.+.+ .+..++++++ ..++|+..+.
T Consensus 134 ~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~ 191 (239)
T smart00721 134 KEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNA 191 (239)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHH
Confidence 45566778888899999998888776655421 4566777777 4478877644
No 110
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=69.31 E-value=66 Score=26.82 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hhhhcCCchhh-hhhhHHHHH
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLERARTKN---KDVHAMPPNVS-CIGDYDVWR 293 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~---k~v~~~e~~~~-~~~~~e~~~ 293 (313)
..+++..+++.++..+|+.+...+.+.+.+. ..+..++..++ +...|+.-.
T Consensus 94 ~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~ 148 (194)
T cd07307 94 KEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELR 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999998888776542 34445555555 445555543
No 111
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=55.18 E-value=14 Score=38.36 Aligned_cols=112 Identities=12% Similarity=0.092 Sum_probs=75.0
Q ss_pred CCCceEEEeecceeeCC--cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHH
Q psy17232 30 NDNVLIVDISDALSEKE--KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSRE 107 (313)
Q Consensus 30 ~~~~l~V~Vsdp~k~g~--yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~ 107 (313)
.++...+..+++.+.|+ ++.+.+..+ .-.++++|.+|+-.+..+... +++-+.||++.+... ++..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~k~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~-~~~~ 88 (524)
T COG5391 21 SGSSSESQESSTVKNNDGSPVNSSIKST---------PLDIQKRYSGFESSAKLPRIS--DAPSFVPPPGGHTIS-YTIA 88 (524)
T ss_pred CCCceeeccccccccCCccccccccccc---------CcccccCCcccccccccchhc--ccccccCCCCCcccc-cccc
Confidence 34456666677776665 666666542 346899999999999999996 999999999988763 2211
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 108 KLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 108 K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
. .+ .......+++ +..+.++..+|--+..+|.=.....+..|+.+.
T Consensus 89 ~---~~-~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 134 (524)
T COG5391 89 I---HD-SKIHSRASEF---------------RSLRDMLSLLLPTSLQPPLSTSHTILDYFISST 134 (524)
T ss_pred C---Cc-cccccchhhh---------------hhhhhhhhhcCchhcCCCCcccccchHhHhhhc
Confidence 1 00 0001111111 135567888888888888888888888888775
No 112
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=51.27 E-value=1.3e+02 Score=26.95 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17232 210 NDFFENENNFLHEYHNHLKEATTRADRMTFKRK 242 (313)
Q Consensus 210 D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k 242 (313)
||. .-...+|.+++..|..+...+..++...+
T Consensus 23 DP~-~~l~q~ird~e~~l~~a~~~~a~~~a~~~ 54 (221)
T PF04012_consen 23 DPE-KMLEQAIRDMEEQLRKARQALARVMANQK 54 (221)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 66677888888888888777666655544
No 113
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=42.24 E-value=3.1e+02 Score=26.10 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH-HHHHHHHHHHHHHHHHHH---HHHHhhcchhh
Q psy17232 210 NDFFENENNFLHEYHNHLKEATTRADRMTFKRK----------DAAK-RLLYRRLRCLADYENANR---NLERARTKNKD 275 (313)
Q Consensus 210 D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k----------~a~K-~lL~~R~~~~~~ye~a~~---~L~k~r~~~k~ 275 (313)
..+|+..+-|+.+++.-++=+...+.||.+-.. ..-| .+..+|.....++|.|.+ ++++.-.--.+
T Consensus 136 p~E~~Ky~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~~~~~~~~~Er~~L~~k~~~L~~Q~edAk~LKe~~drRe~~v~~ 215 (264)
T PF08687_consen 136 PNEFEKYRMFIGDLEKVVNLLLSLSGRLARVENALSSLDEDADPEERESLLEKRRLLQRQLEDAKELKENLDRRERVVSE 215 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 568899999999999988888888888877655 1123 334445555556666554 33322211111
Q ss_pred hhcCCchhhhhhhHHHHHHHH
Q psy17232 276 VHAMPPNVSCIGDYDVWRTTR 296 (313)
Q Consensus 276 v~~~e~~~~~~~~~e~~~~~~ 296 (313)
+-.---.-+..+||....+.|
T Consensus 216 iL~~~L~~eq~~dy~~fv~mK 236 (264)
T PF08687_consen 216 ILARYLSEEQLADYRHFVKMK 236 (264)
T ss_dssp HHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 111111112347888876654
No 114
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=41.50 E-value=2.4e+02 Score=26.38 Aligned_cols=115 Identities=11% Similarity=0.149 Sum_probs=49.1
Q ss_pred ccccccccccccccchhchhhhhhhhhHhhhhcccchhhhccCCCCCCcHHHHHHHHHHHHH----HHHHHHHHHHH-HH
Q psy17232 162 DHQFHVFLQYNQDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEY----HNHLKEATTRA-DR 236 (313)
Q Consensus 162 d~~l~~FL~~~~el~~~~k~~~~~~~~~l~~~~~~~~~~~~s~~~kd~D~~F~~~k~~l~~l----~~~L~~l~~~~-~~ 236 (313)
.|.++.|+..................++|.-+.+..+....+.+-++...-.-.+-+.-..+ +..++.++... .-
T Consensus 21 nP~lrnlv~~G~~Y~kal~a~~~a~~~y~dAl~Kige~A~~s~gSkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~p 100 (232)
T cd07646 21 NPSLRNFIAMGKNYEKALASVTFAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQ 100 (232)
T ss_pred ChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777787776322211111111223666655554444333333344333333333333333 33333333211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Q psy17232 237 MTFKRKDAAKRLLYRRLRCLADYENANRNLERARTKNKDV 276 (313)
Q Consensus 237 lv~~~k~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k~v 276 (313)
|=+.-..-+|-+=.-.-+.+.++-+..+.|+|.+.+.|.+
T Consensus 101 LE~k~E~D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKl 140 (232)
T cd07646 101 LEQKVELDSRYLTAALKKYQTEHRSKGESLEKCQAELKKL 140 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111112233333344455666677777777777665555
No 115
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=40.50 E-value=21 Score=22.24 Aligned_cols=11 Identities=27% Similarity=0.329 Sum_probs=7.0
Q ss_pred HHHHHHHHHHH
Q psy17232 142 TVAMHEMFLTR 152 (313)
Q Consensus 142 Rr~~Le~FL~r 152 (313)
|+++|++||.+
T Consensus 4 RK~SLqRFLeK 14 (27)
T PF09425_consen 4 RKASLQRFLEK 14 (27)
T ss_dssp --HHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56688888864
No 116
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=39.66 E-value=2.6e+02 Score=25.83 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhcc---hhhhhcCCchhh-hhhhHH
Q psy17232 255 CLADYENANRNLERARTK---NKDVHAMPPNVS-CIGDYD 290 (313)
Q Consensus 255 ~~~~ye~a~~~L~k~r~~---~k~v~~~e~~~~-~~~~~e 290 (313)
+-..|+.+...+++++.. .++++.++.+++ |.++|.
T Consensus 128 aK~~Y~~~c~e~e~~~~~~~s~k~~eK~~~K~~ka~~~Y~ 167 (261)
T cd07648 128 AKEAYHARCLELERLRRENASPKEIEKAEAKLKKAQDEYK 167 (261)
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555432 345555555555 334443
No 117
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=39.18 E-value=3.2e+02 Score=25.42 Aligned_cols=83 Identities=10% Similarity=0.131 Sum_probs=44.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH---HHHHHHHHHHHHHHHhh------
Q psy17232 209 HNDFFENENNFLHEYHNHLKEATTRADRMTFKRK---------DAAKRLLYRRL---RCLADYENANRNLERAR------ 270 (313)
Q Consensus 209 ~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k---------~a~K~lL~~R~---~~~~~ye~a~~~L~k~r------ 270 (313)
+|..|-....-......+|..+....+..+...= ..++...+.|- ++-.+|+.+...+.+++
T Consensus 75 ~~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~ 154 (244)
T cd07595 75 DDSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSGGQ 154 (244)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccc
Confidence 3444544444445555555555544444333322 34455555553 34567888888887765
Q ss_pred ---cc----hhhhhcCCchhh-hhhhHHH
Q psy17232 271 ---TK----NKDVHAMPPNVS-CIGDYDV 291 (313)
Q Consensus 271 ---~~----~k~v~~~e~~~~-~~~~~e~ 291 (313)
.+ ..+++.++++++ |.+++..
T Consensus 155 ~~~~K~~~l~eE~e~ae~k~e~~~e~~~~ 183 (244)
T cd07595 155 GAAAKVDALKDEYEEAELKLEQCRDALAT 183 (244)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 11 336666666666 4444443
No 118
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=36.90 E-value=15 Score=24.04 Aligned_cols=21 Identities=10% Similarity=0.444 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCCccCcccc
Q psy17232 145 MHEMFLTRLAQHPVFRLDHQF 165 (313)
Q Consensus 145 ~Le~FL~ri~~HP~L~~d~~l 165 (313)
.|..||+.|..||.|..++.+
T Consensus 3 ~l~~Yl~ei~~~~LLt~eeE~ 23 (37)
T PF00140_consen 3 SLRLYLKEIGRYPLLTAEEEI 23 (37)
T ss_dssp HHHHHHHHHHHS-EETTHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHH
Confidence 478999999999999887654
No 119
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=35.81 E-value=1.4e+02 Score=27.92 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=40.3
Q ss_pred hchhhhhh---hh-hHhhhhcccc-hhhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17232 178 RSKNKMEM---LE-GFLNSFSKTT-DQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK 242 (313)
Q Consensus 178 ~~k~~~~~---~~-~~l~~~~~~~-~~~~~s~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k 242 (313)
.+|++.|. +| .||..+.-.- ..+ .+.+++...+....|+..++..++.+...+...++++.
T Consensus 7 ~GKRkAEKDe~vG~~Ff~~i~~P~~~~l----d~~~ve~~~e~f~~F~k~Md~sv~~l~~~~~~~~kk~~ 72 (237)
T PF10456_consen 7 QGKRKAEKDELVGANFFLTIEVPEAKPL----DPQDVESQVESFKKFTKSMDDSVKQLSSVANEFAKKHQ 72 (237)
T ss_dssp HHHHHHHT--S-GGGGGGGEE-ESS--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCchhhhhhhhhhHHhhhccCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555443 44 6666665211 111 13466788999999999999999999999988887663
No 120
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=32.13 E-value=4.1e+02 Score=24.53 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17232 209 HNDFFENENNFLHEYHNHLKEATTRADRMTFKRK 242 (313)
Q Consensus 209 ~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k 242 (313)
.|++ .-...||.+++..|.++...+..++..++
T Consensus 23 EDp~-~~l~Q~ird~~~~l~~ar~~~A~~~a~~k 55 (225)
T COG1842 23 EDPE-KMLEQAIRDMESELAKARQALAQAIARQK 55 (225)
T ss_pred cCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555 77788899999999888887777766655
No 121
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=31.64 E-value=2.3e+02 Score=25.63 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17232 214 ENENNFLHEYHNHLKEATTRADRMTFKR 241 (313)
Q Consensus 214 ~~~k~~l~~l~~~L~~l~~~~~~lv~~~ 241 (313)
.-...|+.++...|.++...+-.++..+
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~ 54 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADK 54 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777666555554443
No 122
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=31.14 E-value=2.4e+02 Score=21.55 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=11.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Q psy17232 208 DHNDFFENENNFLHEYHNHLKEATT 232 (313)
Q Consensus 208 d~D~~F~~~k~~l~~l~~~L~~l~~ 232 (313)
++...|++....+...-...+.+..
T Consensus 3 ~~~~~~d~~~~~~~~~~~~~~~~~~ 27 (79)
T PF04380_consen 3 DPNKIFDDLAKQISEALPAAQGPRE 27 (79)
T ss_pred CchhHHHHHHHHHHHHHHhhhhhHH
Confidence 3345555555555554443333333
No 123
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=28.49 E-value=1.7e+02 Score=23.98 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=35.3
Q ss_pred CCCceEEEeecc----eeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhh
Q psy17232 30 NDNVLIVDISDA----LSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEE 84 (313)
Q Consensus 30 ~~~~l~V~Vsdp----~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~ 84 (313)
|.-.++|...|+ .+.||.+.|.-.+. +.--.-.+.=.|+|..|..|.+..--
T Consensus 16 G~KtiEiRlnD~kr~~ikvGD~I~f~~~~~---~~~l~v~V~~i~~Y~sF~~ll~~e~~ 71 (109)
T cd06555 16 GKKTIEIRLNDEKRQQIKVGDKILFNDLDT---GQQLLVKVVDIRKYDSFRELLEEEGL 71 (109)
T ss_pred CCCEEEEEecccchhcCCCCCEEEEEEcCC---CcEEEEEEEEEEecCCHHHHHHhcCH
Confidence 455689999998 58999988855321 00001244567999999999877654
No 124
>PLN02866 phospholipase D
Probab=26.37 E-value=59 Score=36.60 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 141 KTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 141 kRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
+++.+||.||+.++.++.+.+++.+..||+.+
T Consensus 140 r~~~~~~~yL~~~l~~~~~~n~~~~~~FlevS 171 (1068)
T PLN02866 140 RAKVAMQEYLNHFLGNLDIVNSREVCKFLEVS 171 (1068)
T ss_pred HHHHHHHHHHHHHhccchhcCCHhhhhheeec
Confidence 35567999999999999999999999999987
No 125
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=25.33 E-value=5.1e+02 Score=23.45 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17232 214 ENENNFLHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLERART 271 (313)
Q Consensus 214 ~~~k~~l~~l~~~L~~l~~~~~~lv~~~k~a~K~lL~~R~~~~~~ye~a~~~L~k~r~ 271 (313)
..+..|...+....+.+...+.++.+......+.+-+ +-..|+.+...++.++.
T Consensus 89 ~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~K----aK~~Y~~~c~~~e~~~~ 142 (236)
T cd07651 89 EKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEK----AREKYEADCSKINSYTL 142 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHH
Confidence 3445566666666666666666665555444443333 33445555544444443
No 126
>PF04297 UPF0122: Putative helix-turn-helix protein, YlxM / p13 like; InterPro: IPR007394 Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13 (O05290 from SWISSPROT). Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway [].; PDB: 1S7O_A 1XSV_B.
Probab=24.91 E-value=2.3e+02 Score=22.97 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhcCCchhhhh
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNVSCI 286 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k~v~~~e~~~~~~ 286 (313)
+||.+.+++-...+.+||+....+.+-+...+-++..++.....
T Consensus 48 qaV~d~ikr~~~~L~~yE~kL~l~~k~~~~~~~~~~i~~~~~~~ 91 (101)
T PF04297_consen 48 QAVYDSIKRAEKKLEEYEEKLGLVEKFQKRKKLLEQIEEILDDE 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999998888877766666666665543
No 127
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.27 E-value=4.5e+02 Score=23.44 Aligned_cols=75 Identities=12% Similarity=0.287 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--------hhhhcCCchhh
Q psy17232 213 FENENNFLHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLERARTKN--------KDVHAMPPNVS 284 (313)
Q Consensus 213 F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~--------k~v~~~e~~~~ 284 (313)
......-+..+...+..+....+.....+.+. ..|...+.+++...+.+...+.+. ..++.......
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~ 145 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAKKGREES-----EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIK 145 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33444444444444444444444442222222 556666666665555555444442 23444444444
Q ss_pred -hhhhHHHH
Q psy17232 285 -CIGDYDVW 292 (313)
Q Consensus 285 -~~~~~e~~ 292 (313)
+.+.-++|
T Consensus 146 ~~~~~anrw 154 (188)
T PF03962_consen 146 IAKEAANRW 154 (188)
T ss_pred HHHHHHHHH
Confidence 44666666
No 128
>PRK10698 phage shock protein PspA; Provisional
Probab=22.84 E-value=5.9e+02 Score=23.25 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17232 214 ENENNFLHEYHNHLKEATTRADRMTFKRK 242 (313)
Q Consensus 214 ~~~k~~l~~l~~~L~~l~~~~~~lv~~~k 242 (313)
.-+..|+.+++..|.++...+.+++...+
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~k 55 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEKK 55 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777665555554443
No 129
>KOG1853|consensus
Probab=22.25 E-value=4.4e+02 Score=25.22 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLERA 269 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k~ 269 (313)
.++|+-|..+. .++|+||..|+++
T Consensus 104 ~aikeql~kyi---ReLEQaNDdLEra 127 (333)
T KOG1853|consen 104 HAIKEQLRKYI---RELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHH---HHHHHhccHHHHh
Confidence 34444444433 2445566666655
No 130
>PRK14487 cbb3-type cytochrome c oxidase subunit II; Provisional
Probab=21.56 E-value=4.6e+02 Score=24.28 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=34.9
Q ss_pred EEeeccchHHHHHHHhhh-ccCccccCCCCC---CCCCCc--chHHHHhhcCCCCCCCcHHHHHHHH
Q psy17232 68 VVRQHEEFVWLHDRFEEN-EAYAGYIIPPAP---PRPDFD--SSREKLQKLGEGEGTMTKEEFIKMK 128 (313)
Q Consensus 68 V~RRysDF~wL~~~L~~~-~~~pg~iIPPlP---~K~~~~--~~~~K~~~~~~~~~~~~~e~f~~~~ 128 (313)
|--||++ .||+..|.+- ...||.+.|+-| ++. +. ....+|..+..-...++.+++..-.
T Consensus 110 vG~R~s~-~w~~~hl~nP~~v~PgS~MPay~~L~~~~-ld~~~~~~~l~~l~~~gvPYt~~~i~~a~ 174 (217)
T PRK14487 110 VGGRYSD-EWHRNHLINPRSVVPESNMPAYPWLAEND-LDGTDTAEKMTALRVVGVPYTDEDIAGAK 174 (217)
T ss_pred hhccCCH-HHHHHHHhCcccCCCCCCCCCCccccccc-CCHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 4456765 9999999863 234888888866 443 23 3345554442211356666665543
Done!