Query psy17232
Match_columns 313
No_of_seqs 217 out of 908
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 16:42:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hpc_X SNX5 protein; sprting n 100.0 4.1E-48 1.4E-52 336.0 14.2 159 24-182 1-160 (161)
2 3dyt_A Sorting nexin-9; 3-heli 100.0 6.8E-37 2.3E-41 296.3 11.8 230 30-302 17-335 (366)
3 4akv_A Sorting nexin-33; trans 100.0 1.3E-35 4.5E-40 289.4 14.0 223 30-294 38-348 (386)
4 3iq2_A Sorting nexin-7; SNX7, 100.0 1.6E-30 5.5E-35 219.9 9.6 115 32-173 7-125 (138)
5 1ocs_A Sorting nexin GRD19; so 100.0 4.7E-29 1.6E-33 216.3 8.5 115 30-172 32-158 (162)
6 2csk_A Sorting nexin 12; SNX12 100.0 9.9E-29 3.4E-33 210.3 8.6 120 30-172 7-130 (146)
7 2i4k_A Sorting nexin-1, SNX1; 99.9 3E-29 1E-33 207.8 0.8 121 33-172 3-127 (128)
8 3lui_A Sorting nexin-17, SNX17 99.9 7.7E-25 2.6E-29 179.4 5.5 101 32-172 2-108 (115)
9 1kmd_A VAM7P, vacuolar morphog 99.9 1.3E-23 4.5E-28 172.3 6.8 107 32-172 4-114 (117)
10 1xte_A Serine/threonine-protei 99.9 1.2E-22 4.2E-27 174.4 8.6 108 30-173 4-115 (154)
11 3p0c_A Nischarin; structural g 99.9 4.6E-22 1.6E-26 166.4 6.3 103 33-172 22-124 (130)
12 2v14_A Kinesin-like motor prot 99.8 5.2E-21 1.8E-25 160.7 9.7 98 32-165 4-106 (134)
13 1h6h_A Neutrophil cytosol fact 99.8 7.7E-21 2.6E-25 160.7 9.9 105 32-172 19-135 (143)
14 4az9_A Sorting nexin-24; prote 99.8 2.5E-20 8.6E-25 155.8 9.4 108 24-172 8-125 (129)
15 2ar5_A Phosphoinositide 3-kina 99.8 1.4E-19 4.9E-24 149.3 9.9 108 32-172 4-115 (121)
16 2ett_A Sorting nexin-22; PX do 99.8 2.4E-20 8.3E-25 155.7 4.3 87 45-172 30-116 (128)
17 1kq6_A NCF-1, P47PHOX, neutrop 99.8 1.2E-18 4.1E-23 147.2 10.4 103 33-172 6-121 (141)
18 2iwl_X Phosphatidylinositol-4- 99.7 9.5E-19 3.2E-23 147.8 5.3 110 30-172 17-130 (140)
19 2v6v_A BUD emergence protein 1 99.7 2.5E-16 8.5E-21 135.6 11.2 105 31-172 16-135 (156)
20 2l73_A NADPH oxidase organizer 99.5 1.2E-14 4.2E-19 124.1 8.1 105 34-172 9-127 (149)
21 2dyb_A Neutrophil cytosol fact 99.4 9.4E-13 3.2E-17 125.8 10.0 106 31-172 21-138 (341)
22 2wwe_A Phosphoinositide-3-kina 99.3 5.1E-12 1.7E-16 104.7 7.1 102 32-171 24-126 (127)
23 2fic_A Bridging integrator 1; 97.1 0.003 1E-07 56.8 10.4 86 209-294 50-200 (251)
24 1uru_A Amphiphysin; endocytosi 95.4 0.15 5.2E-06 44.9 11.6 52 243-294 129-187 (244)
25 4avm_A Bridging integrator 2; 92.2 1.4 4.8E-05 39.3 11.6 52 243-294 125-181 (237)
26 4a3a_A Amphiphysin; structural 90.4 2.2 7.4E-05 38.3 10.9 52 243-294 130-186 (243)
27 3ogl_Q JAZ1 incomplete degron 45.3 12 0.00042 21.1 1.8 11 142-152 6-16 (21)
28 3ogk_Q JAZ1 incomplete degron 36.9 11 0.00038 21.5 0.8 8 144-151 3-10 (22)
29 2spc_A Spectrin; cytoskeleton; 36.8 1.3E+02 0.0043 22.3 9.6 62 212-273 44-105 (107)
30 3edu_A Beta-I spectrin, spectr 34.0 1.7E+02 0.0058 24.4 8.4 15 225-239 56-70 (218)
31 1cun_A Protein (alpha spectrin 31.6 2E+02 0.007 23.4 8.4 18 215-232 76-93 (213)
32 3pe0_A Plectin; cytoskeleton, 27.8 1.8E+02 0.0062 26.0 7.9 82 213-294 50-131 (283)
33 3r6n_A Desmoplakin; spectrin r 21.9 2.6E+02 0.009 27.0 8.2 84 211-294 133-216 (450)
34 3anw_A GINS51, putative unchar 21.8 3.2E+02 0.011 23.0 7.8 52 209-260 23-82 (188)
35 3ghg_A Fibrinogen alpha chain; 20.9 2.2E+02 0.0076 28.4 7.3 18 287-304 176-193 (562)
36 1u5p_A Spectrin alpha chain, b 20.6 2.2E+02 0.0076 23.4 6.6 18 216-233 80-97 (216)
37 1quu_A Human skeletal muscle a 20.6 3.6E+02 0.012 22.9 8.2 53 220-272 64-116 (250)
No 1
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=100.00 E-value=4.1e-48 Score=336.05 Aligned_cols=159 Identities=66% Similarity=1.020 Sum_probs=149.2
Q ss_pred CcccCC-CCCceEEEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCC
Q psy17232 24 SENIDL-NDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDF 102 (313)
Q Consensus 24 ~~~~~l-~~~~l~V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~ 102 (313)
+++||| +++.|+|.|+||.++|+||+|+|+|+|++|.|...+++|+||||||+|||++|..++.|||+||||||+|+.+
T Consensus 1 ~~~~~~~~~~~l~i~V~dp~~~~~~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~ 80 (161)
T 3hpc_X 1 SVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDF 80 (161)
T ss_dssp CCCCCCCCSCSEEEEEEEEEEETTEEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCC
T ss_pred CccccCCCCCeEEEEECCCeEecCCEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccc
Confidence 578999 9999999999999999999999999999999999999999999999999999998666999999999999999
Q ss_pred cchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccccccchhchhh
Q psy17232 103 DSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNK 182 (313)
Q Consensus 103 ~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~~el~~~~k~~ 182 (313)
++++.|++++|.++++|++++|.+|+++|+++|||.|||||++||+||++|++||+|++|+.|+.||+.++|+++++||+
T Consensus 81 ~~~~~K~~~~g~~~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~dl~~~~k~~ 160 (161)
T 3hpc_X 81 DGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNT 160 (161)
T ss_dssp HHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCSCSCC-----
T ss_pred cchhhhhhcccccccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCccchhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888875
No 2
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=100.00 E-value=6.8e-37 Score=296.27 Aligned_cols=230 Identities=13% Similarity=0.239 Sum_probs=180.4
Q ss_pred CCCceEEEeecceeeC------CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCcc-ccCCCCCCCCCC
Q psy17232 30 NDNVLIVDISDALSEK------EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAG-YIIPPAPPRPDF 102 (313)
Q Consensus 30 ~~~~l~V~Vsdp~k~g------~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg-~iIPPlP~K~~~ 102 (313)
....|.|.|+||.++| .||+|+|+|++ .+++|+||||||+|||+.|..+ ||+ ++|||||+|+.+
T Consensus 17 ~~~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~-------~~~~V~RRYsdF~~L~~~L~~~--~p~~~~iP~lP~K~~~ 87 (366)
T 3dyt_A 17 PTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTN-------TNRSVNHRYKHFDWLYERLLVK--FGSAIPIPSLPDKQVT 87 (366)
T ss_dssp CSSCCCEEEECGGGSSSCCCCCSSCEEEEEETT-------CSCCEEEEHHHHHHHHHHHHHH--HTTTSCCCCCC-----
T ss_pred CCCCeEEEEcCceeecCCCCCcCeEEEEEEEec-------CcEEEEeeHHHHHHHHHHHHHh--CCCcCcCCCCcCCccc
Confidence 4567999999999876 49999999986 4789999999999999999996 999 999999999875
Q ss_pred cchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccccccchhch--
Q psy17232 103 DSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSK-- 180 (313)
Q Consensus 103 ~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~~el~~~~k-- 180 (313)
+ +|+++||+ +||.+||.||++|+.||+|++|+.|+.||+.+++.+|+..
T Consensus 88 g--------------------------~~~~~fie---~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~~~~~~w~~~~r 138 (366)
T 3dyt_A 88 G--------------------------RFEEEFIK---MRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKR 138 (366)
T ss_dssp --------------------------------CHH---HHHHHHHHHHHHHHTCTTGGGSHHHHHHHHCSSHHHHHHHHH
T ss_pred C--------------------------CCCHHHHH---HHHHHHHHHHHHHhCCHhhhCCcHHHHhhCCCchhhHHHHhh
Confidence 2 24678999 6788999999999999999999999999999866665422
Q ss_pred --hhhhhhh-hHhhhhcccchhhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q psy17232 181 --NKMEMLE-GFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK--------------- 242 (313)
Q Consensus 181 --~~~~~~~-~~l~~~~~~~~~~~~s~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k--------------- 242 (313)
++.+..| |||+.+...... ..+.+.|++|+..+.|+..|+.+++.++..++++++++.
T Consensus 139 ~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 214 (366)
T 3dyt_A 139 KAERDELAGVMIFSTMEPEAPD----LDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQ 214 (366)
T ss_dssp HHHTCCCCGGGGGGGEEESSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hhccCcccchHHHHHhcCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1222334 688777654322 234577899999999999999999999999999987641
Q ss_pred ---------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q psy17232 243 ---------------------------------------------------------DAAKRLLYRRLRCLADYENANRN 265 (313)
Q Consensus 243 ---------------------------------------------------------~a~K~lL~~R~~~~~~ye~a~~~ 265 (313)
.++|++|.+|.++++.|+++++.
T Consensus 215 ~l~~~~~~~~~~~~~~L~~al~~l~~~~~~i~~l~~~qa~~d~~~l~E~L~~Y~~~l~avKd~l~~r~~aL~k~~e~~kl 294 (366)
T 3dyt_A 215 SLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKL 294 (366)
T ss_dssp HHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHSGGGTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999
Q ss_pred HHHhhcchhhhhcCCchhhhh-----hhHHHHHHHHhhhccC
Q psy17232 266 LERARTKNKDVHAMPPNVSCI-----GDYDVWRTTRMQTGIW 302 (313)
Q Consensus 266 L~k~r~~~k~v~~~e~~~~~~-----~~~e~~~~~~~~~~~~ 302 (313)
+.+.|..+.+++.++.+.+.. +.+++|+. .+..|++
T Consensus 295 ~~~~K~~~~~~~~~~~r~e~is~~~~~El~rF~~-~r~~Dfk 335 (366)
T 3dyt_A 295 VATSKITLQDKQNMVKRVSIMSYALQAEMNHFHS-NRIYDYN 335 (366)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 888888888887777666622 77788876 4444544
No 3
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=289.35 Aligned_cols=223 Identities=16% Similarity=0.310 Sum_probs=172.7
Q ss_pred CCCceEEEeecceeeC------CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCc
Q psy17232 30 NDNVLIVDISDALSEK------EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFD 103 (313)
Q Consensus 30 ~~~~l~V~Vsdp~k~g------~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~ 103 (313)
.+..+.|.|+||.+++ .||+|+|++++ .+++|+||||||+|||+.|..+ |||++|||||+|..++
T Consensus 38 ~~~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~-------~~~~V~RRYsdF~~L~~~L~~~--~p~~~iP~lP~K~~~g 108 (386)
T 4akv_A 38 NPHPFACSVEDPTKQTKFKGIKSYISYKLTPTH-------AASPVYRRYKHFDWLYNRLLHK--FTVISVPHLPEKQATG 108 (386)
T ss_dssp CSSCCCEEEECC------------CCEEEEETT-------SSSCEEECHHHHHHHHHHHHHH--CSSSCCCCCCCCC---
T ss_pred CCCCeEEEEcCceEecCCCCCcCeEEEEEEEEe-------CCeEEEcCHHHHHHHHHHHHHh--CCCCCCCCCCCCcccC
Confidence 4567999999999876 38999999976 3689999999999999999996 9999999999998753
Q ss_pred chHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccccccchhch-h-
Q psy17232 104 SSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSK-N- 181 (313)
Q Consensus 104 ~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~~el~~~~k-~- 181 (313)
+|+++||+ +||.+||.||++|+.||+|+.|+.|+.||+.+++..|+.. +
T Consensus 109 --------------------------~~~~~fie---~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~~~~~w~~~~r~ 159 (386)
T 4akv_A 109 --------------------------RFEEDFIE---KRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRR 159 (386)
T ss_dssp -----------------------------CCTTT---HHHHHHHHHHHHHHTCTTGGGCHHHHHHHSCCCSHHHHHHHHH
T ss_pred --------------------------CCCHHHHH---HHHHHHHHHHHHHhCCHhhhCCcHHHHHhCCCChhhHHHhhhh
Confidence 24567888 6788999999999999999999999999999866655422 1
Q ss_pred --hhhhhh-hHhhhhcccchhhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Q psy17232 182 --KMEMLE-GFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKEATTRADRMTFKRK---------------- 242 (313)
Q Consensus 182 --~~~~~~-~~l~~~~~~~~~~~~s~~~kd~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k---------------- 242 (313)
+.+.+| +|++.+...... ..+.++|++|+..+.|+..++.+++.++..++++++++.
T Consensus 160 ~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~r~~~~~~~e~~~l~~~l~~ 235 (386)
T 4akv_A 160 AEKDEMVGASFLLTFQIPTEH----QDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQA 235 (386)
T ss_dssp HHTCSCCGGGGGGTSBCCSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccCCCccchHHHHHhcCCccc----cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 222334 577766543222 235678899999999999999999999999999887741
Q ss_pred --------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17232 243 --------------------------------------------------------DAAKRLLYRRLRCLADYENANRNL 266 (313)
Q Consensus 243 --------------------------------------------------------~a~K~lL~~R~~~~~~ye~a~~~L 266 (313)
.++|++|.+|.++++.|+++++.+
T Consensus 236 l~~~~~~~~~~~~~~Ls~aL~~l~~~~e~i~~l~~~Qa~~d~~~L~E~L~~Y~~ll~s~Kdll~~R~~aL~k~~ea~kl~ 315 (386)
T 4akv_A 236 ISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMS 315 (386)
T ss_dssp HHHHTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999888
Q ss_pred HHhhcchhhhhcCCchhhhh-----hhHHHHHH
Q psy17232 267 ERARTKNKDVHAMPPNVSCI-----GDYDVWRT 294 (313)
Q Consensus 267 ~k~r~~~k~v~~~e~~~~~~-----~~~e~~~~ 294 (313)
.+.|....+++.++.+.+.. +.+++|+.
T Consensus 316 ~~~K~~~~~~~e~~~r~e~IS~~~~~El~rF~~ 348 (386)
T 4akv_A 316 DEGRMVQDEADGIRRRCRVVGFALQAEMNHFHQ 348 (386)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777766666555444422 66666666
No 4
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=99.96 E-value=1.6e-30 Score=219.93 Aligned_cols=115 Identities=23% Similarity=0.468 Sum_probs=101.6
Q ss_pred CceEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHH
Q psy17232 32 NVLIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSRE 107 (313)
Q Consensus 32 ~~l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~ 107 (313)
..|+|+|+||.++|+ ||+|+|++++++|.|...+|.|+||||||.|||+.|..+ |||++|||||+|..++.
T Consensus 7 ~~l~i~V~dp~~~~~g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~--~p~~~iP~lP~K~~~~~--- 81 (138)
T 3iq2_A 7 KDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEA--HPTLIIPPLPEKFIVKG--- 81 (138)
T ss_dssp CCCEEEEEEEEEEECSSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHH--CTTSCCCCCCCCC-------
T ss_pred ceEEEEECCCEEecCCCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHH--CcCcccCCCCcchhhcc---
Confidence 459999999999975 999999999999999999999999999999999999996 99999999999987631
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccccc
Q psy17232 108 KLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQ 173 (313)
Q Consensus 108 K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~~ 173 (313)
+.++|+++||| +||.+||.||++|+.||.|++|+.|+.||+.+.
T Consensus 82 -------------------~~~~~~~~fie---~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~~ 125 (138)
T 3iq2_A 82 -------------------MVERFNDDFIE---TRRKALHKFLNRIADHPTLTFNEDFKIFLTAQA 125 (138)
T ss_dssp -------------------CCGGGCHHHHH---HHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTTC
T ss_pred -------------------ccccCCHHHHH---HHHHHHHHHHHHHHcCHhhhcChHHHhhhCCCC
Confidence 11346789999 677899999999999999999999999999984
No 5
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=99.95 E-value=4.7e-29 Score=216.26 Aligned_cols=115 Identities=12% Similarity=0.256 Sum_probs=102.2
Q ss_pred CCCceEEEeecceee---C-C----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhc---cCccccCCCCCC
Q psy17232 30 NDNVLIVDISDALSE---K-E----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENE---AYAGYIIPPAPP 98 (313)
Q Consensus 30 ~~~~l~V~Vsdp~k~---g-~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~---~~pg~iIPPlP~ 98 (313)
.++.|.|+|+||.++ | + |++|+|++++++|.|...+|.|+||||||+|||+.|...+ .+||++|||||+
T Consensus 32 p~~~l~i~V~dp~~~~~~g~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP~ 111 (162)
T 1ocs_A 32 PENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPG 111 (162)
T ss_dssp SSCCEEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTT
T ss_pred CCCeEEEEEeCCEEeeccCCCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCCC
Confidence 566799999999998 6 4 8999999999999999999999999999999999999962 229999999999
Q ss_pred CCCCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC-ccccccccccc
Q psy17232 99 RPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRL-DHQFHVFLQYN 172 (313)
Q Consensus 99 K~~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~-d~~l~~FL~~~ 172 (313)
|..++. +|+++||| +||.+||.||++|+.||+|+. ++.|+.||+.+
T Consensus 112 K~~~~~-------------------------~~~~~fie---~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~ 158 (162)
T 1ocs_A 112 KILLSN-------------------------RFSNEVIE---ERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAE 158 (162)
T ss_dssp CCCSSC-------------------------TTSHHHHH---HHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCS
T ss_pred Cccccc-------------------------CCCHHHHH---HHHHHHHHHHHHHHcCHHhhhCCHHHHHhCCCc
Confidence 998631 24568898 678899999999999999998 89999999987
No 6
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=9.9e-29 Score=210.30 Aligned_cols=120 Identities=23% Similarity=0.408 Sum_probs=102.8
Q ss_pred CCCceEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcch
Q psy17232 30 NDNVLIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSS 105 (313)
Q Consensus 30 ~~~~l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~ 105 (313)
.++.|.|.|+||.++++ |++|+|++++++|.|...+|.|+||||||+|||+.|.. +||++|||||+|+.+...
T Consensus 7 ~~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~---~~~~~iP~lP~K~~~~~~ 83 (146)
T 2csk_A 7 GSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELER---DSKIVVPPLPGKALKRQL 83 (146)
T ss_dssp CSCCCEEEEEEEEEESSSSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSS---SSSCCCCCCSCCCCCCSS
T ss_pred CCCcEEEEEcCceEecCCCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHh---ccCCcCCCCCCCchhhcc
Confidence 45689999999999875 89999999999999999999999999999999999987 589999999999987421
Q ss_pred HHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 106 REKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 106 ~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
......+ +++++||| +||.+||.||++|+.||.|+.++.|+.||+.+
T Consensus 84 -----~~~~~~g------------~~~~~fie---~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 130 (146)
T 2csk_A 84 -----PFRGDEG------------IFEESFIE---ERRQGLEQFINKIAGHPLAQNERCLHMFLQEE 130 (146)
T ss_dssp -----TTCCCSS------------CCCHHHHH---HHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCS
T ss_pred -----ccccccC------------CCCHHHHH---HHHHHHHHHHHHHHcChhhccCcHHHhhcCCC
Confidence 0000011 24578898 67889999999999999999999999999987
No 7
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=99.95 E-value=3e-29 Score=207.77 Aligned_cols=121 Identities=27% Similarity=0.465 Sum_probs=102.7
Q ss_pred ceEEEeecceeeCC----cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHH
Q psy17232 33 VLIVDISDALSEKE----KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREK 108 (313)
Q Consensus 33 ~l~V~Vsdp~k~g~----yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K 108 (313)
.|.|+|+||.++|+ |++|.|++++++|.|...+|.|+||||||.|||+.|...+.++|++|||||+|..++.++.|
T Consensus 3 ~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~~ 82 (128)
T 2i4k_A 3 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVK 82 (128)
T ss_dssp SCCCCBCCCCBCCCSSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSCC
T ss_pred eEEEEECCceEecCCCcCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhhh
Confidence 37899999999876 89999999999999999999999999999999999999733468999999999988643322
Q ss_pred HhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 109 LQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 109 ~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
+ +.+ ++++++||| +|+.+||.||++|++||.|++++.|+.||+.+
T Consensus 83 ~---~~~-------------~~~~~~~ie---~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 83 V---GKE-------------DSSSAEFLE---KRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127 (128)
T ss_dssp C---CSC-------------CCSSTTHHH---HHHHHHHHHHHHHHHCHHHHCSHHHHTTTTCC
T ss_pred h---cCC-------------CCCCHHHHH---HHHHHHHHHHHHHHcCcccccChHHHHhhCCC
Confidence 2 111 123467888 67889999999999999999999999999976
No 8
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=99.90 E-value=7.7e-25 Score=179.36 Aligned_cols=101 Identities=19% Similarity=0.408 Sum_probs=86.9
Q ss_pred CceEEEeecceeeC------CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcch
Q psy17232 32 NVLIVDISDALSEK------EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSS 105 (313)
Q Consensus 32 ~~l~V~Vsdp~k~g------~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~ 105 (313)
+.+.|+|.++...+ .|++|+|+++ ..|.|+||||||.|||+.|... ||+++|||||+|..++
T Consensus 2 ~~l~v~Ip~~~~~~~~~g~~~y~~Y~I~v~--------~~~~V~RRYsdF~~L~~~L~~~--~~~~~~P~lP~K~~~~-- 69 (115)
T 3lui_A 2 NAMHFSIPETESRSGDSGGSAYVAYNIHVN--------GVLHCRVRYSQLLGLHEQLRKE--YGANVLPAFPPKKLFS-- 69 (115)
T ss_dssp ---CEEEEEEEEEC-----CCEEEEEEEET--------TEEEEEEEHHHHHHHHHHHHHH--HCSTTSCCCCCCCSSC--
T ss_pred CcEEEEECCeEEecCCCCCCCEEEEEEEEC--------CeEEEEecHHHHHHHHHHHHHH--cCCCcCCCCCCCcccC--
Confidence 45789999888664 3899999974 4689999999999999999996 9999999999999863
Q ss_pred HHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 106 REKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 106 ~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
++++||| +|+.+||.||++|+.||.|++++.|+.||+.+
T Consensus 70 -------------------------~~~~~ie---~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 108 (115)
T 3lui_A 70 -------------------------LTPAEVE---QRREQLEKYMQAVRQDPLLGSSETFNSFLRRA 108 (115)
T ss_dssp -------------------------CCHHHHH---HHHHHHHHHHHHHHHSHHHHHCHHHHHHHHHH
T ss_pred -------------------------CCHHHHH---HHHHHHHHHHHHHHcChhhhcChHHHHHHCcC
Confidence 1357888 67889999999999999999999999999987
No 9
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=99.89 E-value=1.3e-23 Score=172.31 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=89.0
Q ss_pred CceEEEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCC-CCCCCCCCcchHHHHh
Q psy17232 32 NVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIP-PAPPRPDFDSSREKLQ 110 (313)
Q Consensus 32 ~~l~V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIP-PlP~K~~~~~~~~K~~ 110 (313)
+.++|+|.||.+.+.|+.|.|++ .+|.|+||||||.|||+.|... || ++|| |+|+|..+...
T Consensus 4 ~~~~v~I~~~~~~~~~~~Y~I~v---------~~~~V~RRYsdF~~L~~~L~~~--~~-~~~P~~lP~K~~~~~~----- 66 (117)
T 1kmd_A 4 EKLRIKVDDVKINPKYVLYGVST---------PNKRLYKRYSEFWKLKTRLERD--VG-STIPYDFPEKPGVLDR----- 66 (117)
T ss_dssp CCCCCEEEEEEECSSCEEEEEEC---------SSCCEEECHHHHHHHHHHHHHH--HC-SCCCCCCCCCCCSSCS-----
T ss_pred CCEEEEECCceecCCEEEEEEEE---------ceEEEEechHHHHHHHHHHHHH--cC-ccCCCCCCCCCEeccc-----
Confidence 56899999999977899999998 3789999999999999999995 76 7899 99999985210
Q ss_pred hcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---cCccccccccccc
Q psy17232 111 KLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVF---RLDHQFHVFLQYN 172 (313)
Q Consensus 111 ~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L---~~d~~l~~FL~~~ 172 (313)
.. +. +.++++||| +||.+||.||++|+.||+| +.++.|+.||+.+
T Consensus 67 ~~--~~------------~~~~~~~ie---~Rr~~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~ 114 (117)
T 1kmd_A 67 RW--QR------------RYDDPEMID---ERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLS 114 (117)
T ss_dssp TT--CC------------CTTCHHHHH---HHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCC
T ss_pred cc--cc------------CCCCHHHHH---HHHHHHHHHHHHHHhCcchhhhhcCHHHHHhcCCC
Confidence 00 00 124578899 6788999999999999976 7899999999976
No 10
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=99.87 E-value=1.2e-22 Score=174.36 Aligned_cols=108 Identities=16% Similarity=0.263 Sum_probs=92.7
Q ss_pred CCCceEEEeecceeeC----CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcch
Q psy17232 30 NDNVLIVDISDALSEK----EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSS 105 (313)
Q Consensus 30 ~~~~l~V~Vsdp~k~g----~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~ 105 (313)
.++.+.|+|.++.+.+ .|+.|.|+++++ ...|.|+||||||.|||+.|... ||+++ ||||+|..++.
T Consensus 4 ~~~~~~v~I~~~~~~~~~~~~~~~Y~I~v~~~-----~~~~~V~RRYsdF~~Lh~~L~~~--~p~~~-~plP~K~~~g~- 74 (154)
T 1xte_A 4 KESCPSVSIPSSDEHREKKKRFTVYKVLVSVG-----RSEWFVFRRYAEFDKLYNSLKKQ--FPAMA-LKIPAKRIFGD- 74 (154)
T ss_dssp CCCCCEEEEEEEEEEEETTEEEEEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHHHH--CGGGC-CCCCCSCCSSC-
T ss_pred CCCCCEEEECCcEEEecCCCCEEEEEEEEEEC-----CEEEEEEeeHHHHHHHHHHHHHH--CCCCc-ccCCCccccCC-
Confidence 4567899999998776 389999999873 46899999999999999999995 99985 56999998741
Q ss_pred HHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccccccccccc
Q psy17232 106 REKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQ 173 (313)
Q Consensus 106 ~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~~ 173 (313)
+ |+++||| +||.+||.||++|+.||.|+.++.|+.||+.+.
T Consensus 75 ------------~------------~~~~~ie---~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~ 115 (154)
T 1xte_A 75 ------------N------------FDPDFIK---QRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDS 115 (154)
T ss_dssp ------------T------------TCHHHHH---HHHHHHHHHHHHHTTCHHHHTSHHHHHHTTTTC
T ss_pred ------------C------------CCHHHHH---HHHHHHHHHHHHHHcChhhccChHHHHHhCCCC
Confidence 1 3467888 678899999999999999999999999999873
No 11
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.85 E-value=4.6e-22 Score=166.36 Aligned_cols=103 Identities=12% Similarity=0.109 Sum_probs=88.1
Q ss_pred ceEEEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhc
Q psy17232 33 VLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKL 112 (313)
Q Consensus 33 ~l~V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~ 112 (313)
+..|.|.+......|+.|.|.++++ ...|.|+||||||.|||+.|... || ..+||||+|..++.
T Consensus 22 s~~v~I~~~~~~~~y~~Y~I~v~~~-----~~~~~V~RRYSdF~~L~~~L~~~--~~-~~~p~lP~K~~~g~-------- 85 (130)
T 3p0c_A 22 SMEARVVGSELVDTYTVYIIQVTDG-----SHEWTVKHRYSDFHDLHEKLVAE--RK-IDKNLLPPKKIIGK-------- 85 (130)
T ss_dssp CCEEEEEEEECSSSSCEEEEEEECS-----SCEEEEEEEHHHHHHHHHHHHHT--TS-SCTTSCCCCCCCSC--------
T ss_pred eeEEEEEeccccCCEEEEEEEEEEC-----CeEEEEEehHHHHHHHHHHHHHH--cC-CCCCCCCCcccccc--------
Confidence 4678888877667899999999874 57899999999999999999995 75 55899999998641
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 113 GEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 113 ~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
++++||| +|+.+||.||++|+.||.|+.++.|+.||+.+
T Consensus 86 ------------------~~~~~ie---~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~ 124 (130)
T 3p0c_A 86 ------------------NSRSLVE---KREKDLEVYLQKLLAAFPGVTPRVLAHFLHFH 124 (130)
T ss_dssp ------------------CCSCSHH---HHHHHHHHHHHHHHHTSCSEECHHHHHHHHSC
T ss_pred ------------------CCHHHHH---HHHHHHHHHHHHHHcChhhhcCHHHHHHhCCC
Confidence 1346788 67889999999999999999999999999987
No 12
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=99.84 E-value=5.2e-21 Score=160.70 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=84.2
Q ss_pred CceEEEeecceeeC----CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHH
Q psy17232 32 NVLIVDISDALSEK----EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSRE 107 (313)
Q Consensus 32 ~~l~V~Vsdp~k~g----~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~ 107 (313)
+.++|+|.+....+ .|+.|.|.++++ ...|.|+||||||.|||+.|... ||++++||+|+|..++
T Consensus 4 ~~i~VsIp~~~~~~~~~~~~~~Y~I~v~~~-----~~~~~V~RRYsdF~~L~~~L~~~--~p~~~~p~lP~K~~~~---- 72 (134)
T 2v14_A 4 DPIKISIPRYVLCGQGKDAHFEFEVKITVL-----DETWTVFRRYSRFREMHKTLKLK--YAELAALEFPPKKLFG---- 72 (134)
T ss_dssp SCEEEEEEEEEEESSTTSCEEEEEEEEEET-----TEEEEEEECHHHHHHHHHHHHHH--CGGGGGCCCCCCCSSC----
T ss_pred CCEEEEECcEEEEecCCCCEEEEEEEEEEC-----CeEEEEEeeHHHHHHHHHHHHHH--CCCCCCCCCcCCcccc----
Confidence 35889999988774 489999999874 47899999999999999999996 9999999999999874
Q ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccCcccc
Q psy17232 108 KLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPV-FRLDHQF 165 (313)
Q Consensus 108 K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~-L~~d~~l 165 (313)
+ ++++||| +|+.+||.||++|+.||. |+.++.+
T Consensus 73 ----------~------------~~~~~ie---~Rr~~Le~yL~~ll~~~~~l~~sp~~ 106 (134)
T 2v14_A 73 ----------N------------KDERVIA---ERRSHLEKYLRDFFSVMLQSATSPLH 106 (134)
T ss_dssp ----------T------------TSHHHHH---HHHHHHHHHHHHHHHHHHHCTTSTTC
T ss_pred ----------C------------CCHHHHH---HHHHHHHHHHHHHHhChHhhcCCHHH
Confidence 1 3467888 678899999999999997 8888854
No 13
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.83 E-value=7.7e-21 Score=160.72 Aligned_cols=105 Identities=17% Similarity=0.340 Sum_probs=90.3
Q ss_pred CceEEEeecceeeC---CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCc--------cccCCCCCCCC
Q psy17232 32 NVLIVDISDALSEK---EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYA--------GYIIPPAPPRP 100 (313)
Q Consensus 32 ~~l~V~Vsdp~k~g---~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~p--------g~iIPPlP~K~ 100 (313)
..+.|+|.++++.+ .|+.|.|.++++ .+..|.|+||||||.|||..|... || +++|||||+|.
T Consensus 19 ~~i~v~I~~~e~~~~~~~~~vY~I~v~~~----~~~~~~V~RRYsdF~~Lh~~L~~~--~p~~~~~~~~~~~lP~lP~K~ 92 (143)
T 1h6h_A 19 VAISANIADIEEKRGFTSHFVFVIEVKTK----GGSKYLIYRRYRQFHALQSKLEER--FGPDSKSSALACTLPTLPAKV 92 (143)
T ss_dssp CEEEEEEEEEEEECSSSCEEEEEEEEEET----TSCEEEEEEEHHHHHHHHHHHHHH--HSTTCSCGGGCCCCCCCCCCC
T ss_pred CeEEEEEcCccccCCCCCeEEEEEEEEEc----CCCEEEEEeeHHHHHHHHHHHHHH--CccccccCCCCCCcccCCCCc
Confidence 35889999998665 588999999864 347899999999999999999996 88 56899999999
Q ss_pred CCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccCccccccccccc
Q psy17232 101 DFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPV-FRLDHQFHVFLQYN 172 (313)
Q Consensus 101 ~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~-L~~d~~l~~FL~~~ 172 (313)
.++. +++||| +|+.+||.||+.|+.||. +++++.|..||+..
T Consensus 93 ~~~~---------------------------~~~~ie---~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~ 135 (143)
T 1h6h_A 93 YVGV---------------------------KQEIAE---MRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQS 135 (143)
T ss_dssp CSSC---------------------------HHHHHH---HHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCC
T ss_pred ccCc---------------------------CHHHHH---HHHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCC
Confidence 8631 246888 678899999999999997 99999999999986
No 14
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=155.80 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=81.9
Q ss_pred CcccCC-CCC----ceEEEeecceeeC-----CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccC
Q psy17232 24 SENIDL-NDN----VLIVDISDALSEK-----EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYII 93 (313)
Q Consensus 24 ~~~~~l-~~~----~l~V~Vsdp~k~g-----~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iI 93 (313)
|.+||+ .++ .++|.|.++...+ .|++|.|.++++ +..|.|+||||||.|||+.|... || +
T Consensus 8 ssgvd~~~en~~~~~~~V~Ip~~~~~~~~~~k~y~vY~I~v~~~-----~~~w~V~RRYsdF~~L~~~L~~~--~~---~ 77 (129)
T 4az9_A 8 SSGVDLGTENLYFQSMEVYIPSFRYEESDLERGYTVFKIEVLMN-----GRKHFVEKRYSEFHALHKKLKKC--IK---T 77 (129)
T ss_dssp ------CCTTCCCCCCEEEEEEEEEECCTTSCCEEEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHTTT--SC---C
T ss_pred cCcccccccccccceeEEEECcEEEEecCCCCCEEEEEEEEEEC-----CEEEEEEeeHHHHHHHHHHHHHh--CC---C
Confidence 345666 332 3678887776554 389999999764 56899999999999999999985 76 6
Q ss_pred CCCCCCCCCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 94 PPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 94 PPlP~K~~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
||+|+|... + ++++||| +||.+||.||++|+.||.+. ++.|..||+..
T Consensus 78 p~lP~K~~~---------------~------------~~~~~ie---~Rr~~Le~yL~~ll~~~~~~-~~~l~~FL~~~ 125 (129)
T 4az9_A 78 PEIPSKHVR---------------N------------WVPKVLE---QRRQGLETYLQAVILENEEL-PKLFLDFLNVR 125 (129)
T ss_dssp CCCCCSCCS---------------C------------CCHHHHH---HHHHHHHHHHHHHHHHCSSC-CHHHHHHTTC-
T ss_pred CCCCccccc---------------C------------CCHHHHH---HHHHHHHHHHHHHHhCchhh-CHHHHHHCCCC
Confidence 999999753 1 2467888 67789999999999999975 78899999875
No 15
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=99.80 E-value=1.4e-19 Score=149.33 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=88.7
Q ss_pred CceEEEeecceeeCC---cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHH
Q psy17232 32 NVLIVDISDALSEKE---KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREK 108 (313)
Q Consensus 32 ~~l~V~Vsdp~k~g~---yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K 108 (313)
..+.|.|.++++..+ +..|.|.++.+.. ...+.|.|||+||.|||..|.++ ||+.++||||+|..++.
T Consensus 4 ~i~~v~V~~~ek~~~~~k~y~Y~I~v~~~~~---~~~~~V~RRYseF~~Lh~~L~~~--fp~~~lP~lP~K~~~g~---- 74 (121)
T 2ar5_A 4 RIKEVSVFTYHKKYNPDKHYIYVVRILREGQ---IEPSFVFRTFDEFQELHNKLSII--FPLWKLPGFPNRMVLGR---- 74 (121)
T ss_dssp SEEEEEEEEEECCCSSSSCCEEEEEEEETTC---SSCEEEEEEHHHHHHHHHHHHHH--SCGGGSCCCCCCCCSSS----
T ss_pred eEEEEEECcEEEEecCCCcEEEEEEEEECCC---ceeEEEEEEHHHHHHHHHHHHHH--CCCCCCCCCCCCeecCc----
Confidence 457899999987653 4449999987531 15899999999999999999996 99999999999998742
Q ss_pred HhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccCccccccccccc
Q psy17232 109 LQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQH-PVFRLDHQFHVFLQYN 172 (313)
Q Consensus 109 ~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~H-P~L~~d~~l~~FL~~~ 172 (313)
.. +.+|+| +|+.+||.||++|+++ |.++.|+.+..|++..
T Consensus 75 ----------~~-----------~~~~~e---~Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~~ 115 (121)
T 2ar5_A 75 ----------TH-----------IKDVAA---KRKIELNSYLQSLMNASTDVAECDLVCTFFHGS 115 (121)
T ss_dssp ----------SS-----------TTHHHH---HHHHHHHHHHHHHHTSCHHHHTSHHHHHHTSSS
T ss_pred ----------cC-----------cHHHHH---HHHHHHHHHHHHHHhCCchhcCCHHHHHHcCCc
Confidence 10 125777 6888999999999886 7999999999999875
No 16
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-20 Score=155.68 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=74.7
Q ss_pred CCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhhcCCCCCCCcHHHH
Q psy17232 45 KEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEF 124 (313)
Q Consensus 45 g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~~~~~~~~~~~e~f 124 (313)
+.|+.|.|.++++ +..|.|+||||||.|||+.|... || |||+|+|..+.
T Consensus 30 ~~~~~Y~I~v~~~-----~~~~~V~RRYSdF~~Lh~~L~~~--~~---iP~lP~K~~~~--------------------- 78 (128)
T 2ett_A 30 KSHMVFRVEVLCS-----GRRHTVPRRYSEFHALHKRIKKL--YK---VPDFPSKRLPN--------------------- 78 (128)
T ss_dssp CCCCEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHHTT--SS---CCCCCCSSCCC---------------------
T ss_pred CCEEEEEEEEEEC-----CcEEEEECCHHHHHHHHHHHHHH--CC---CCCCCCCccCC---------------------
Confidence 4599999999874 46899999999999999999995 75 89999998531
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccccccccc
Q psy17232 125 IKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 125 ~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~L~~d~~l~~FL~~~ 172 (313)
|+++||| +|+.+||.||++|+.||.+. ++.|..||+.+
T Consensus 79 ------~~~~~ie---~Rr~~Le~yL~~ll~~p~~~-s~~l~~FL~~~ 116 (128)
T 2ett_A 79 ------WRTRGLE---QRRQGLEAYIQGILYLNQEV-PKELLEFLRLR 116 (128)
T ss_dssp ------SSSSCHH---HHHHHHHHHHHHHHHHSSSS-CHHHHHHHTCT
T ss_pred ------CCHHHHH---HHHHHHHHHHHHHHhCchhc-CHHHHHhcCCc
Confidence 2346788 67889999999999999887 69999999987
No 17
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.77 E-value=1.2e-18 Score=147.21 Aligned_cols=103 Identities=15% Similarity=0.142 Sum_probs=87.5
Q ss_pred ceEEEeecceeeCC---cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccc---------cCCCCCCCC
Q psy17232 33 VLIVDISDALSEKE---KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGY---------IIPPAPPRP 100 (313)
Q Consensus 33 ~l~V~Vsdp~k~g~---yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~---------iIPPlP~K~ 100 (313)
...|.|.++++.++ ++.|.|.++++ .+..|.|.|||+||.|||..|... ||+. +||+||+|.
T Consensus 6 i~~v~V~~~ek~~~~~~~~~Y~I~V~~~----~~~~~~V~RRYsdF~~Lh~~L~~~--fp~~~g~~~~~~~~lP~lP~K~ 79 (141)
T 1kq6_A 6 IRHIALLGFEKRFVPSQHYVYMFLVKWQ----DLSEKVVYRRFTEIYEFHKTLKEM--FPIEAGAINPENRIIPHLPAPK 79 (141)
T ss_dssp EEEEEEEEEEEECSSSCEEEEEEEEEET----TCCEEEEEECHHHHHHHHHHHHHH--CTTTTTSSCGGGCCSCCCCCCC
T ss_pred EEEEEEccEEEecCCCCeEEEEEEEEEc----CCCEEEEEecHHHHHHHHHHHHHH--CchhhcccCccccccCCCCCcc
Confidence 46899999998763 66799999864 246899999999999999999996 8875 899999998
Q ss_pred CCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccCccccccccccc
Q psy17232 101 DFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHP-VFRLDHQFHVFLQYN 172 (313)
Q Consensus 101 ~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP-~L~~d~~l~~FL~~~ 172 (313)
.++. .+|++ +|+.+||.||+.|+.|| .+++|+.+..||+..
T Consensus 80 ~~~~----------------------------~~~~e---~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~ 121 (141)
T 1kq6_A 80 WFDG----------------------------QRAAE---NRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVR 121 (141)
T ss_dssp CCCS----------------------------HHHHH---HHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCC
T ss_pred ccCC----------------------------HHHHH---HHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCC
Confidence 7631 25677 67889999999999987 599999999999886
No 18
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=99.74 E-value=9.5e-19 Score=147.76 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=85.0
Q ss_pred CCCceEEEeecceeeC---CcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchH
Q psy17232 30 NDNVLIVDISDALSEK---EKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSR 106 (313)
Q Consensus 30 ~~~~l~V~Vsdp~k~g---~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~ 106 (313)
+...+.|.|.++++.. .+..|.|.++..-. ...+.|.|||+||.|||.+|... ||+.++||||+|..++.+
T Consensus 17 ~~~i~~v~I~~~ek~~~~~k~~~Y~I~V~~~~~---~~~~~V~RRYseF~~Lh~~L~~~--fp~~~lP~lP~K~~~~~~- 90 (140)
T 2iwl_X 17 DGRIKEVSVFTYHKKYNPDKHYIYVVRILREGQ---IEPSFVFRTFDEFQELHNKLSII--FPLWKLPGFPNRMVLGRT- 90 (140)
T ss_dssp HCCEEEEEEEEEEECCSSSSCEEEEEEEEETTC---SSCEEEEECHHHHHHHHHHHHHH--SCGGGSCCCCC--------
T ss_pred CCeeEEEEECcEEEEecCCCeEEEEEEEEECCC---ceeEEEEeEHHHHHHHHHHHHHH--CcCccCCCCCCCeecCcc-
Confidence 4456799999998765 45669999886421 24789999999999999999996 999999999999876410
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccCccccccccccc
Q psy17232 107 EKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQ-HPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 107 ~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~-HP~L~~d~~l~~FL~~~ 172 (313)
. +.+|++ +|+.+||.||+.|++ ||.+++++.+..||+..
T Consensus 91 -------------~-----------~~~~~e---~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~ 130 (140)
T 2iwl_X 91 -------------H-----------IKDVAA---KRKIELNSYLQSLMNASTDVAECDLVCTFFHPL 130 (140)
T ss_dssp ---------------------------CCCC---HHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCC
T ss_pred -------------c-----------hHHHHH---HHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCC
Confidence 0 124666 678899999999998 67999999999999986
No 19
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=99.67 E-value=2.5e-16 Score=135.62 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=86.2
Q ss_pred CCceEEEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCcc--------------ccCCCC
Q psy17232 31 DNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAG--------------YIIPPA 96 (313)
Q Consensus 31 ~~~l~V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg--------------~iIPPl 96 (313)
...+.|.|......+++..|.|.+++. .+..+.|.|||+||.+||..|... ||. ++||+|
T Consensus 16 ~~~~~~sI~~~~~~~~~y~Y~I~V~~~----d~~~~~V~RRYsdF~~Lh~~L~~~--fP~e~g~~~~~~g~~~~~~lP~L 89 (156)
T 2v6v_A 16 ELLVKASVESFGLEDEKYWFLVCCELS----NGKTRQLKRYYQDFYDLQVQLLDA--FPAEAGKLRDAGGQWSKRIMPYI 89 (156)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEEEET----TSCEEEEEECHHHHHHHHHHHHHH--CTTTTTCCBCTTCCBCCCCSCCC
T ss_pred CcceEEEEeeEEEECCEEEEEEEEEEc----CCCEEEEEEEhHHHHHHHHHHHHH--cchhhcccccccccccccccCCC
Confidence 345778888877777766699999874 346899999999999999999996 763 789999
Q ss_pred CCCCCCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccCccccccccccc
Q psy17232 97 PPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQ-HPVFRLDHQFHVFLQYN 172 (313)
Q Consensus 97 P~K~~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~-HP~L~~d~~l~~FL~~~ 172 (313)
|+|..+. +++|++ +|+.+|+.||+.|+. +|.++.|+.|+.||+..
T Consensus 90 P~K~~~~----------------------------~~~~~e---~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~ 135 (156)
T 2v6v_A 90 PGPVPYV----------------------------TNSITK---KRKEDLNIYVADLVNLPDYISRSEMVHSLFVVL 135 (156)
T ss_dssp CCCCSSC----------------------------CHHHHH---HHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCC
T ss_pred CCCcccC----------------------------CHHHHH---HHHHHHHHHHHHHHhCCccccCCHHHHHHhCCC
Confidence 9998752 135677 678899999999998 55699999999999986
No 20
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=124.11 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=84.1
Q ss_pred eEEEeecceee----CCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCc---------cccCCCCCCCC
Q psy17232 34 LIVDISDALSE----KEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYA---------GYIIPPAPPRP 100 (313)
Q Consensus 34 l~V~Vsdp~k~----g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~p---------g~iIPPlP~K~ 100 (313)
..|.|.++++. +.|+.|.|.++.. .+.++.|.|||+||..||..|.+. || .++||+||+|.
T Consensus 9 ~~v~v~~~ek~~~~~~~y~~Y~I~V~~~----d~~~~~V~RRYseF~~Lh~~L~~~--FP~e~~~~~~~~r~lP~lP~k~ 82 (149)
T 2l73_A 9 PRYPVSVQGAALVQIKRLQTFAFSVRWS----DGSDTFVRRSWDEFRQLKKTLKET--FPVEAGLLRRSDRVLPKLLDAP 82 (149)
T ss_dssp CCCEEEEEEEEEECCSSSCEEEEEEEET----TSCEEEEEEEHHHHHHHHHHHHHH--CGGGGSSSCSSCCSSCCCCCCS
T ss_pred eEEEEEeeeEeecCCCceEEEEEEEEEe----CCCEEEEEEehHHHHHHHHHHHHH--CchhhcccccccccccCCCCCe
Confidence 45677777764 3488899999863 346799999999999999999996 87 35899999998
Q ss_pred CCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccCccccccccccc
Q psy17232 101 DFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPV-FRLDHQFHVFLQYN 172 (313)
Q Consensus 101 ~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~-L~~d~~l~~FL~~~ 172 (313)
.++. .. +.++++ +|+..|+.||+.|++.|. +++++.++.||+..
T Consensus 83 ~~~~--------------~~-----------~~~~~e---~R~~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~ 127 (149)
T 2l73_A 83 LLGR--------------VG-----------RTSRGL---ARLQLLETYSRRLLATAERVARSPTITGFFAPQ 127 (149)
T ss_dssp CCSS--------------CC-----------HHHHHH---HHHHHHHHHHHHHHHHCHHHHHSHHHHHHHSCC
T ss_pred eecc--------------cc-----------chHHHH---HHHHHHHHHHHHHHhCCccccCCHHHHHHhCCC
Confidence 8641 01 134666 677899999999998764 99999999999886
No 21
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=99.38 E-value=9.4e-13 Score=125.78 Aligned_cols=106 Identities=18% Similarity=0.351 Sum_probs=85.9
Q ss_pred CCceEEEeecceeeCC---cEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCc--------cccCCCCCCC
Q psy17232 31 DNVLIVDISDALSEKE---KVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYA--------GYIIPPAPPR 99 (313)
Q Consensus 31 ~~~l~V~Vsdp~k~g~---yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~p--------g~iIPPlP~K 99 (313)
+..+.|.|.++++.+. |..|.|.++.. .+..+.|.|||+||..||..|..+ || .++||+||+|
T Consensus 21 ~~~~~v~I~~~~~~~~~~~~~~Y~i~v~~~----~~~~~~v~RrYsdF~~Lh~~L~~~--fp~e~g~~~~~~~lp~lP~k 94 (341)
T 2dyb_A 21 DVAISANIADIEEKRGFTSHFVFVIEVKTK----GGSKYLIYRRYRQFHALQSKLEER--FGPDSKSSALAXTLPTLPAK 94 (341)
T ss_dssp TSEEEEEEEEEEEEESSSEEEEEEEEEEET----TSCEEEEEEEHHHHHHHHHHHHHH--TCC---------CCCCCCCC
T ss_pred CCcEEEEECCeEEecCCCcEEEEEEEEEEc----CCcEEEEEeehHHHHHHHHHHHHH--CchhhccccccccccCCCCc
Confidence 3457899998875543 77899998853 346799999999999999999996 87 3579999999
Q ss_pred CCCcchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccCccccccccccc
Q psy17232 100 PDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPV-FRLDHQFHVFLQYN 172 (313)
Q Consensus 100 ~~~~~~~~K~~~~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~HP~-L~~d~~l~~FL~~~ 172 (313)
..++. ..+|++ +|+..|+.||++|+.+|. ++.++.+..|++..
T Consensus 95 ~~~~~---------------------------~~~~~e---~R~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~ 138 (341)
T 2dyb_A 95 VYVGV---------------------------KQEIAE---MRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQS 138 (341)
T ss_dssp CCCSC---------------------------HHHHHH---HHHHHHHHHHHHHHHSCHHHHTCHHHHHHHSCC
T ss_pred cccCc---------------------------cHHHHH---HHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Confidence 88632 134666 577899999999999887 99999999999875
No 22
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=99.28 E-value=5.1e-12 Score=104.67 Aligned_cols=102 Identities=10% Similarity=0.154 Sum_probs=81.4
Q ss_pred CceEEEeecceeeCCcEEEEEEeeecccccccCceEEEeeccchHHHHHHHhhhccCccccCCCCCCCCCCcchHHHHhh
Q psy17232 32 NVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQK 111 (313)
Q Consensus 32 ~~l~V~Vsdp~k~g~yv~Y~V~tkt~l~~f~~~~~~V~RRysDF~wL~~~L~~~~~~pg~iIPPlP~K~~~~~~~~K~~~ 111 (313)
....|.|.+-.+...| .|.|.+... .+..+.|.|||++|.-||++|... ||..++|++|+|..++.+.
T Consensus 24 ~i~~~~v~~~~k~~~~-~Yvi~V~~s----d~~~~~~~rry~eF~~LH~qLkk~--Fp~~~LP~fP~K~ll~~t~----- 91 (127)
T 2wwe_A 24 SIERATILGFSKKSSN-LYLIQVTHS----NNETSLTEKSFEQFSKLHSQLQKQ--FASLTLPEFPHWWHLPFTN----- 91 (127)
T ss_dssp SEEEEEEEEEETTEEE-EEEEEEEET----TSCEEEEEECHHHHHHHHHHHHHH--TTTSCCCCCCCTTSHHHHH-----
T ss_pred cEEEEEEEEEEecccE-EEEEEEEEe----CCCeEEEEEEHHHHHHHHHHHHHh--CccccCCCCCCccccCcCH-----
Confidence 3458888887666334 488887653 247889999999999999999995 9999999999999764211
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccCcccccccccc
Q psy17232 112 LGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQ-HPVFRLDHQFHVFLQY 171 (313)
Q Consensus 112 ~~~~~~~~~~e~f~~~~~~~~~efie~rrkRr~~Le~FL~ri~~-HP~L~~d~~l~~FL~~ 171 (313)
.-+ +|+++||.||+.|++ -|.+++++.+..||..
T Consensus 92 ----------------------~~~----eRr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~~ 126 (127)
T 2wwe_A 92 ----------------------SDH----RRFRDLNHYMEQILNVSHEVTNSDCVLSFFLS 126 (127)
T ss_dssp ----------------------CHH----HHHHHHHHHHHHHTTSCHHHHTSHHHHHHHHC
T ss_pred ----------------------HHH----HHHHHHHHHHHHHhcCCceeecCHHHHHHhCC
Confidence 112 377799999999998 7999999999999864
No 23
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=97.08 E-value=0.003 Score=56.80 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=58.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Q psy17232 209 HNDFFENENNFLHEYHNHLKEATTRADRMTFKRK---------------------------------------------- 242 (313)
Q Consensus 209 ~D~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k---------------------------------------------- 242 (313)
.|++|++....+..++..+..+.+.+...+...+
T Consensus 50 ~D~~Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~ 129 (251)
T 2fic_A 50 KDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENNDLLWMDYHQKLV 129 (251)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4889999888888777777766655444333222
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh----hhhcCCchhh-hhhhHHHHHH
Q psy17232 243 --------------DAAKRLLYRRLRCLADYENANRNLERARTKNK----DVHAMPPNVS-CIGDYDVWRT 294 (313)
Q Consensus 243 --------------~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k----~v~~~e~~~~-~~~~~e~~~~ 294 (313)
..++.++..|.+++.+|+.+...+.+.+.+.+ .+..+|.+++ +.+.||..+.
T Consensus 130 ~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~ 200 (251)
T 2fic_A 130 DQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNV 200 (251)
T ss_dssp HHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999888888776543 4455666666 4578886654
No 24
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=95.38 E-value=0.15 Score=44.93 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch------hhhhcCCchhh-hhhhHHHHHH
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLERARTKN------KDVHAMPPNVS-CIGDYDVWRT 294 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~------k~v~~~e~~~~-~~~~~e~~~~ 294 (313)
..++.++..|.+++.||+.+...+.|.+.+. ..+..++.+++ +.+.|+..+.
T Consensus 129 ~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k~kd~~kl~~ae~el~~ak~~ye~ln~ 187 (244)
T 1uru_A 129 PEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNT 187 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999877542 24555666676 5588887654
No 25
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=92.24 E-value=1.4 Score=39.30 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hhhhcCCchhh-hhhhHHHHHH
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLERARTKN----KDVHAMPPNVS-CIGDYDVWRT 294 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~----k~v~~~e~~~~-~~~~~e~~~~ 294 (313)
..++.++..|..++.||+.+...+++.+.+. ..+..+|.+++ +...|+..+.
T Consensus 125 ~~i~k~I~KR~~kllDyd~~~~~~~kl~~k~~kd~~kl~kae~el~~a~~~ye~lN~ 181 (237)
T 4avm_A 125 SEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQ 181 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567889999999999999998888776542 24455666666 4588888776
No 26
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=90.42 E-value=2.2 Score=38.33 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hhhhcCCchhh-hhhhHHHHHH
Q psy17232 243 DAAKRLLYRRLRCLADYENANRNLERARTKN----KDVHAMPPNVS-CIGDYDVWRT 294 (313)
Q Consensus 243 ~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~----k~v~~~e~~~~-~~~~~e~~~~ 294 (313)
..++.++..|..++.||+.+...+++.+.+. ..+..+|++++ +...|+..+.
T Consensus 130 ~~i~k~I~KR~~KllDYD~~~~k~~kL~~K~~kd~~kl~kae~el~~Ak~~Ye~lN~ 186 (243)
T 4a3a_A 130 PDIKNRIAKRSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNV 186 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678889999999999999988888776543 34556777777 4588888876
No 27
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=45.28 E-value=12 Score=21.06 Aligned_cols=11 Identities=27% Similarity=0.280 Sum_probs=8.8
Q ss_pred HHHHHHHHHHH
Q psy17232 142 TVAMHEMFLTR 152 (313)
Q Consensus 142 Rr~~Le~FL~r 152 (313)
|+++|++||.+
T Consensus 6 Rk~SLqRFleK 16 (21)
T 3ogl_Q 6 RRASLHRFLEK 16 (26)
T ss_pred HHHHHHHHHHH
Confidence 66789999875
No 28
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=36.90 E-value=11 Score=21.48 Aligned_cols=8 Identities=38% Similarity=0.364 Sum_probs=4.6
Q ss_pred HHHHHHHH
Q psy17232 144 AMHEMFLT 151 (313)
Q Consensus 144 ~~Le~FL~ 151 (313)
++|++||.
T Consensus 3 ~SLqRFle 10 (22)
T 3ogk_Q 3 ASLHRFLE 10 (26)
T ss_pred hhHHHHHH
Confidence 45666664
No 29
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=36.85 E-value=1.3e+02 Score=22.25 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q psy17232 212 FFENENNFLHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLERARTKN 273 (313)
Q Consensus 212 ~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~ 273 (313)
.++....-+.....++..+...++.|+...--+...+-.+...+...|......++..|...
T Consensus 44 kh~~fe~~~~~~~~~i~~l~~~a~~L~~~~h~~~~~I~~r~~~l~~~w~~L~~~~~~Rr~~L 105 (107)
T 2spc_A 44 KHEDFDKAINGHEQKIAALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRL 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555778888999999999999887765555566666677777887777776666543
No 30
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=33.97 E-value=1.7e+02 Score=24.41 Aligned_cols=15 Identities=7% Similarity=0.158 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy17232 225 NHLKEATTRADRMTF 239 (313)
Q Consensus 225 ~~L~~l~~~~~~lv~ 239 (313)
.++..+...++.|+.
T Consensus 56 ~~v~~v~~~~~~L~~ 70 (218)
T 3edu_A 56 ERVDNVNAFIERLID 70 (218)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445555555544
No 31
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=31.58 E-value=2e+02 Score=23.44 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17232 215 NENNFLHEYHNHLKEATT 232 (313)
Q Consensus 215 ~~k~~l~~l~~~L~~l~~ 232 (313)
.+...+..+......+..
T Consensus 76 ~i~~~~~~l~~~w~~L~~ 93 (213)
T 1cun_A 76 EIQQRLAQFVDHWKELKQ 93 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455444444444
No 32
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=27.77 E-value=1.8e+02 Score=26.04 Aligned_cols=82 Identities=11% Similarity=-0.043 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhcCCchhhhhhhHHHH
Q psy17232 213 FENENNFLHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNVSCIGDYDVW 292 (313)
Q Consensus 213 F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k~v~~~e~~~~~~~~~e~~ 292 (313)
|+....-+..-+.++..+...++.|+...--++..+-.+.......|+.........+...++...+..=+..+.+.+.|
T Consensus 50 h~~le~El~a~e~~v~~v~~~g~~L~~~~hp~~~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~qF~~da~e~e~W 129 (283)
T 3pe0_A 50 YSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEGQ 129 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566667777777777776644333344444445555667766666555555555444433333344666665
Q ss_pred HH
Q psy17232 293 RT 294 (313)
Q Consensus 293 ~~ 294 (313)
..
T Consensus 130 l~ 131 (283)
T 3pe0_A 130 LQ 131 (283)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 33
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=21.88 E-value=2.6e+02 Score=26.98 Aligned_cols=84 Identities=8% Similarity=0.022 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhcCCchhhhhhhHH
Q psy17232 211 DFFENENNFLHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPNVSCIGDYD 290 (313)
Q Consensus 211 ~~F~~~k~~l~~l~~~L~~l~~~~~~lv~~~k~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~~k~v~~~e~~~~~~~~~e 290 (313)
..|+....-+..-+.++..+...++.|+...--+...+-.+.......|+.........+...++...+..=+..+.+-+
T Consensus 133 ~khq~l~~EL~~~e~~i~~v~~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~QF~~Da~Eae 212 (450)
T 3r6n_A 133 EAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTE 212 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35666667777778888888888888876544344444445555556676666655555555554444332222446666
Q ss_pred HHHH
Q psy17232 291 VWRT 294 (313)
Q Consensus 291 ~~~~ 294 (313)
.|..
T Consensus 213 sWL~ 216 (450)
T 3r6n_A 213 AYLK 216 (450)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 34
>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=21.83 E-value=3.2e+02 Score=23.04 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=35.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy17232 209 HNDFFENENNFLHEYHNHLKEATT-----RADRMT---FKRKDAAKRLLYRRLRCLADYE 260 (313)
Q Consensus 209 ~D~~F~~~k~~l~~l~~~L~~l~~-----~~~~lv---~~~k~a~K~lL~~R~~~~~~ye 260 (313)
++.||.+...|+..|...++.... ....+. +.-+..+..++..|..+..+.-
T Consensus 23 ~~~FY~~v~~yI~~L~~~~~~~~~~~~~~e~~~~~~el~~~~~~~~~i~~~Rl~KIv~~a 82 (188)
T 3anw_A 23 DEDFYVEFDSLIKALKLSAESSRERGEDVEERLYLAQLKIAESLMKEIIKLRLHKIVDLA 82 (188)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999988765443 111111 1122677888999998877654
No 35
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.87 E-value=2.2e+02 Score=28.41 Aligned_cols=18 Identities=17% Similarity=0.018 Sum_probs=13.5
Q ss_pred hhHHHHHHHHhhhccCCc
Q psy17232 287 GDYDVWRTTRMQTGIWNA 304 (313)
Q Consensus 287 ~~~e~~~~~~~~~~~~~~ 304 (313)
.+|+.+++.--|-+-.+.
T Consensus 176 ~sY~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 176 KDYEDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 899999887777665554
No 36
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=20.64 E-value=2.2e+02 Score=23.38 Aligned_cols=18 Identities=0% Similarity=0.010 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17232 216 ENNFLHEYHNHLKEATTR 233 (313)
Q Consensus 216 ~k~~l~~l~~~L~~l~~~ 233 (313)
+...+..+......++..
T Consensus 80 i~~~~~~l~~~w~~L~~~ 97 (216)
T 1u5p_A 80 VKDKRETINGRFQRIKSM 97 (216)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455444444443
No 37
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=20.57 E-value=3.6e+02 Score=22.89 Aligned_cols=53 Identities=9% Similarity=0.095 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17232 220 LHEYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLERARTK 272 (313)
Q Consensus 220 l~~l~~~L~~l~~~~~~lv~~~k~a~K~lL~~R~~~~~~ye~a~~~L~k~r~~ 272 (313)
+......+..+...++.|+.........+-.+-......|+.....+...+..
T Consensus 64 l~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~r~~~l~~~W~~L~~~~~~R~~~ 116 (250)
T 1quu_A 64 LAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREA 116 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555544322111222222333333454444444444433
Done!