RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17232
(313 letters)
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol,
PI(4,5)P2, cell adhesion, protein transport; 1.47A
{Rattus norvegicus} PDB: 3hpb_A
Length = 161
Score = 149 bits (378), Expect = 5e-45
Identities = 106/160 (66%), Positives = 120/160 (75%), Gaps = 1/160 (0%)
Query: 24 SENIDLN-DNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRF 82
S ++DLN D L +DI DALSE++KVKFTVHTK F V RQHE+FVWLHD
Sbjct: 1 SVSVDLNVDPSLQIDIPDALSERDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTL 60
Query: 83 EENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKT 142
E YAG IIPPAP +PDFD REK+QKLGEGEG+MTKEEF KMKQELEAEYLA FKKT
Sbjct: 61 TETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKT 120
Query: 143 VAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNK 182
V+ HE+FL RL+ HPV D FHVFL+Y+QDLSVR KN
Sbjct: 121 VSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNT 160
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices,
proline rich loop, protein transport; NMR {Homo sapiens}
Length = 128
Score = 101 bits (254), Expect = 4e-27
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 23/144 (15%)
Query: 34 LIVDISDALSEKEK----VKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYA 89
L V I+D + V + V T+ F + V R+ +F+ L+++ E +
Sbjct: 4 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 63
Query: 90 GYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMF 149
G+I+PP P + ++ K+ G+ + EF+ +K A E +
Sbjct: 64 GFIVPPPPEKSLIGMTKVKV-----GKEDSSSAEFL--------------EKRRAALERY 104
Query: 150 LTRLAQHPVFRLDHQFHVFLQYNQ 173
L R+ HP D FL+ +
Sbjct: 105 LQRIVNHPTMLQDPDVREFLEKEE 128
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 146
Score = 98.3 bits (245), Expect = 2e-25
Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 27/148 (18%)
Query: 31 DNVLIVDISDALSEKEK----VKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENE 86
N L +DI + + + V + F + V R++ +F WL + E
Sbjct: 8 SNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELER-- 65
Query: 87 AYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMH 146
+ ++PP P + K Q G+ + +E FI+ ++
Sbjct: 66 -DSKIVVPPLPGK------ALKRQLPFRGDEGIFEESFIEERR--------------QGL 104
Query: 147 EMFLTRLAQHPVFRLDHQFHVFLQYNQD 174
E F+ ++A HP+ + + H+FLQ
Sbjct: 105 EQFINKIAGHPLAQNERCLHMFLQEEAI 132
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A
{Homo sapiens}
Length = 386
Score = 87.9 bits (217), Expect = 9e-20
Identities = 36/220 (16%), Positives = 70/220 (31%), Gaps = 35/220 (15%)
Query: 30 NDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYA 89
N + + D + + + K + + V R+++ F WL++R +
Sbjct: 38 NPHPFACSVEDPTKQTKFKGIKSYISYK-LTPTHAASPVYRRYKHFDWLYNRLLHK--FT 94
Query: 90 GYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFI-KMKQELEAEYLATFKKTVAMHEM 148
+P P + +E+FI K K+ L +
Sbjct: 95 VISVPHLPEKQATG---------------RFEEDFIEKRKRRLI---------------L 124
Query: 149 FLTRLAQHPVFRLDHQFHVFLQYNQDLS-VRSKNKMEMLEGFLNSFSKTTDQVLLSHTVK 207
++ + HPV F FL D K + E E SF T ++
Sbjct: 125 WMDHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEKDEMVGASFLLTFQIPTEHQDLQ 184
Query: 208 DHNDFFENENNFLHEYHNHLKEATTRADRMTFKRKDAAKR 247
D D + F + + + + +T A + K ++
Sbjct: 185 DVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRK 224
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur
genomics consortium, protein transport, transport; 1.70A
{Homo sapiens}
Length = 138
Score = 81.7 bits (202), Expect = 3e-19
Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 34/162 (20%)
Query: 25 ENIDLNDNVLIVDISDALSEKEKVK----FTVHTKKKEVYFLYRTVIVVRQHEEFVWLHD 80
+ DL D L + + + S ++ + + TK F V R++++F+WL
Sbjct: 2 DEPDLKD--LFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKG 59
Query: 81 RFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFK 140
+ EE + IIPP P + E+ ++FI+ ++
Sbjct: 60 KLEEA--HPTLIIPPLPEKFIVKGMVERFN-----------DDFIETRR----------- 95
Query: 141 KTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQ-DLSVRSKN 181
FL R+A HP + F +FL +LS + +
Sbjct: 96 ---KALHKFLNRIADHPTLTFNEDFKIFLTAQAWELSSHAHH 134
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 84.4 bits (208), Expect = 1e-18
Identities = 35/216 (16%), Positives = 67/216 (31%), Gaps = 32/216 (14%)
Query: 30 NDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYA 89
+ ++D + + + + + V +++ F WL++R +
Sbjct: 17 PTSTFDCVVADPRKGSKMYGLKSYIEYQ-LTPTNTNRSVNHRYKHFDWLYERLLVKF-GS 74
Query: 90 GYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMF 149
IP P + Q G +EEFIKM+ + +
Sbjct: 75 AIPIPSLPDK----------QVTG-----RFEEEFIKMRM--------------ERLQAW 105
Query: 150 LTRLAQHPVFRLDHQFHVFLQYNQDLSVRS-KNKMEMLEGFLNSFSKTTDQVLLSHTVKD 208
+TR+ +HPV F FL + + ++ K K E E T + + +
Sbjct: 106 MTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVE 165
Query: 209 HNDFFENENNFLHEYHNHLKEATTRADRMTFKRKDA 244
E F + +KE T +
Sbjct: 166 IEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGP 201
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein;
HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP:
d.189.1.1 PDB: 1ocu_A*
Length = 162
Score = 64.6 bits (157), Expect = 6e-13
Identities = 19/167 (11%), Positives = 49/167 (29%), Gaps = 42/167 (25%)
Query: 17 SGKKSARSENIDLNDNVLIVDISDALSEKEK--------VKFTVHTKKKEVYFLYRTVIV 68
+ + SE +N L +++ + + + + + F R V
Sbjct: 19 GHGEPSYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKV 78
Query: 69 VRQHEEFVWLHDRFEEN---EAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFI 125
R++ +F + + + ++P P + E I
Sbjct: 79 RRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILL--------------SNRFSNEVI 124
Query: 126 -KMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQ-FHVFLQ 170
+ +Q L ++ +A HP+ + + F++
Sbjct: 125 EERRQGL---------------NTWMQSVAGHPLLQSGSKVLVRFIE 156
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 5e-07
Identities = 51/309 (16%), Positives = 96/309 (31%), Gaps = 103/309 (33%)
Query: 25 ENIDLNDNVLIVDISDALSEKEKVKFTVHTKKKE--VYFLYRTVIV--VRQHEEFV---- 76
+N D D + D+ ++ KE++ + +K L+ T++ ++FV
Sbjct: 31 DNFDCKD---VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 77 -----WLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQEL 131
+L + + P+ + R++L + F K
Sbjct: 88 RINYKFLMSPIKTEQ------RQPSMMTRMYIEQRDRLYN--------DNQVFAKY---- 129
Query: 132 EAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNKMEMLEGFLN 191
V+ + +L +L Q + L +V + +L G
Sbjct: 130 ----------NVSRLQPYL-KLRQA-LLELRPAKNVLID-------------GVL-G--- 160
Query: 192 SFSKT--TDQVLLSHTVKDHNDF----------------FENENNFLHEYHNHLKEATTR 233
KT V LS+ V+ DF E L++ + +
Sbjct: 161 -SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 234 ADRMTFKRKDAAKRLLYRRLRCLADYENA---NRNLERARTKNKDVHAMPPNVSCIGDYD 290
+ + + L RRL YEN N++ A+ +A N+SC
Sbjct: 220 SSNIKLRIHSIQAEL--RRLLKSKPYENCLLVLLNVQNAKA----WNAF--NLSC----- 266
Query: 291 VWR---TTR 296
+ TTR
Sbjct: 267 --KILLTTR 273
Score = 34.8 bits (79), Expect = 0.033
Identities = 32/243 (13%), Positives = 66/243 (27%), Gaps = 67/243 (27%)
Query: 1 MMEGLVEESLNDDQLVSGKKSARSENIDLNDNVLIVDISDALSEKEKVKFTVHTKKKEVY 60
++ L + SL + Q S I I L K + ++ +H + Y
Sbjct: 407 VVNKLHKYSLVEKQPKESTIS-------------IPSIYLELKVKLENEYALHRSIVDHY 453
Query: 61 FLYRTVIVVRQHEEFVWLHDR---FEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEG 117
+ +T ++ + + + + G+ + R
Sbjct: 454 NIPKT----FDSDDLIPPYLDQYFYS----HIGHHLKNIEHPERMTLFRMVFLDFR---- 501
Query: 118 TMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSV 177
F++ K + + A A + Q + Y D
Sbjct: 502 ------FLEQK--IRHDSTA--------------WNASGSILNTLQQLKFYKPYICD--- 536
Query: 178 RSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDF----FENENNFLHEYHNHLKEATTR 233
+ K E L + F ++ L+ + D E+ + E EA +
Sbjct: 537 -NDPKYERLVNAILDFLPKIEENLICS---KYTDLLRIALMAEDEAIFE------EAHKQ 586
Query: 234 ADR 236
R
Sbjct: 587 VQR 589
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P
transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Length = 115
Score = 46.6 bits (111), Expect = 6e-07
Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 42/127 (33%)
Query: 48 VKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSRE 107
V + +H + ++ + + LH++ + Y ++P PP+ F +
Sbjct: 24 VAYNIHVNG--------VLHCRVRYSQLLGLHEQLRKE--YGANVLPAFPPKKLFSLT-- 71
Query: 108 KLQKLGEGEGTMTKEEFIKM-KQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFH 166
++ +++LE ++ + Q P+ F+
Sbjct: 72 --------------PAEVEQRREQLEK---------------YMQAVRQDPLLGSSETFN 102
Query: 167 VFLQYNQ 173
FL+ Q
Sbjct: 103 SFLRRAQ 109
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase;
1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Length = 154
Score = 45.3 bits (107), Expect = 3e-06
Identities = 30/161 (18%), Positives = 53/161 (32%), Gaps = 36/161 (22%)
Query: 27 IDLNDNVLIVDISDALSEKEKVK-FTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEEN 85
+D ++ V I + +EK K FTV+ K V V R++ EF L++ ++
Sbjct: 1 MDYKESCPSVSIPSSDEHREKKKRFTVY--KVLVSVGRSEWFVFRRYAEFDKLYNSLKKQ 58
Query: 86 EAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKM-KQELEAEYLATFKKTVA 144
+ + P + F G +FIK + L
Sbjct: 59 --FPAMALKI-PAKRIF--------------GDNFDPDFIKQRRAGLNE----------- 90
Query: 145 MHEMFLTRLAQHPVFRLDHQFHVFLQYNQDLSVRSKNKMEM 185
F+ L ++P FLQ + ++ E
Sbjct: 91 ----FIQNLVRYPELYNHPDVRAFLQMDSPRHQSDPSEDED 127
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 9e-06
Identities = 43/249 (17%), Positives = 76/249 (30%), Gaps = 77/249 (30%)
Query: 62 LYRTVIVVRQHEEFVWLHDRFEE--NEAYAGY----IIPPAPPRPDFDSSREKLQKLGEG 115
LY+T + VW +R + + Y G+ I+ P EK +++ E
Sbjct: 1635 LYKTSKAAQD----VW--NRADNHFKDTY-GFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 116 EGTMTKEEFIKMKQELEAEYL-ATFKKTVAMHE-----MFLTRLAQHPVFRLDHQFHVFL 169
M E + K + E + T + T+ Q P + L
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ-PA--------LTL 1738
Query: 170 QYNQDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFL--H---EYH 224
ME +F + L S + + F H EY
Sbjct: 1739 -------------MEKA-----AF-----EDLKSKGLIPADATF-------AGHSLGEY- 1767
Query: 225 NHLKEA-TTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLERARTKNKDVHAMPPN- 282
A + AD M+ + + +++ R + A E R+ N + A+ P
Sbjct: 1768 ----AALASLADVMSI--ESLVE-VVFYRGMTMQ---VAVPRDELGRS-NYGMIAINPGR 1816
Query: 283 VSCIGDYDV 291
V+ +
Sbjct: 1817 VAASFSQEA 1825
Score = 34.6 bits (79), Expect = 0.046
Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 32/154 (20%)
Query: 80 DRFEE-NEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTK--EEFIKMKQELE---- 132
D FEE + Y Y S E L +L K + + + + LE
Sbjct: 168 DYFEELRDLYQTY---HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 133 ---AEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHV--FLQYNQDLSVRSKNKMEMLE 187
+YL + ++ + + +LA + V F Y + + S+ ++
Sbjct: 225 TPDKDYLLSI--PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG---LVT 279
Query: 188 GFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLH 221
+ + + + FF + +
Sbjct: 280 AVAIAETDSWE------------SFFVSVRKAIT 301
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain,
phosphoinositide binding, endocytosis/exocytosis
complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Length = 117
Score = 34.1 bits (78), Expect = 0.012
Identities = 24/142 (16%), Positives = 39/142 (27%), Gaps = 38/142 (26%)
Query: 36 VDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPP 95
+ + D + V + V T K +Y +++ EF L R E + I
Sbjct: 8 IKVDDVKINPKYVLYGVSTPNKRLY---------KRYSEFWKLKTRLERD--VGSTIPYD 56
Query: 96 APPRPDFDSSREKLQKLGEGEGTMTKEEFIKM-KQELEAEYLATFKKTVAMHEMFLTRLA 154
P + + E I + LE FL L
Sbjct: 57 FPEK--------PGVLDRRWQRRYDDPEMIDERRIGLER---------------FLNELY 93
Query: 155 QHPV---FRLDHQFHVFLQYNQ 173
+R FLQ ++
Sbjct: 94 NDRFDSRWRDTKIAQDFLQLSK 115
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo
sapiens} SCOP: d.189.1.1
Length = 143
Score = 30.4 bits (68), Expect = 0.41
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 10/86 (11%)
Query: 32 NVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEEN------ 85
+ I DI + F + K K ++ R++ +F L + EE
Sbjct: 22 SANIADIEEKRGFTSHFVFVIEVKTKG----GSKYLIYRRYRQFHALQSKLEERFGPDSK 77
Query: 86 EAYAGYIIPPAPPRPDFDSSREKLQK 111
+ +P P + +E +
Sbjct: 78 SSALACTLPTLPAKVYVGVKQEIAEM 103
>3p0c_A Nischarin; structural genomics, structural genomics consortium,
SGC, PX signaling protein; 2.27A {Homo sapiens}
Length = 130
Score = 29.8 bits (67), Expect = 0.48
Identities = 20/143 (13%), Positives = 41/143 (28%), Gaps = 35/143 (24%)
Query: 32 NVLIVDISDALSEKEKVK-FTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAG 90
N+ + + E V +TV+ +V V ++ +F LH++
Sbjct: 17 NLYFQSMEARVVGSELVDTYTVY--IIQVTDGSHEWTVKHRYSDFHDLHEKLVAE---RK 71
Query: 91 YIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFL 150
PP+ G ++ K +++LE +L
Sbjct: 72 IDKNLLPPKKII--------------GKNSRSLVEKREKDLEV---------------YL 102
Query: 151 TRLAQHPVFRLDHQFHVFLQYNQ 173
+L FL ++
Sbjct: 103 QKLLAAFPGVTPRVLAHFLHFHF 125
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 31.1 bits (71), Expect = 0.55
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 21/115 (18%)
Query: 81 RFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFI-KMKQELEAEYLAT- 138
R + + + G I P +DS KL + ++ KM + L E
Sbjct: 375 RLDAGDGFQGAEISPY-----YDSLLVKLSTHAI-----SFKQAEEKMVRSLR-EMRIRG 423
Query: 139 FKKTVAMHEMFLTRLAQHPVFRLDHQFHV-FLQYNQDL--SVRSKNKMEMLEGFL 190
K + FL + ++ F + F++ +L S ++ ++
Sbjct: 424 VKTNIP----FLINVMKNKKFT-SGDYTTKFIEETPELFDIQPSLDRGTKTLEYI 473
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 30.8 bits (70), Expect = 0.64
Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 39/196 (19%)
Query: 81 RFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFI-KMKQELEAEYLATF 139
R + +Y+G II +D K+ E I +M + L +
Sbjct: 393 RLDGGTSYSGAIIT-----RYYDPLLVKVTAWAP-----NPLEAISRMDRALREFRIRGV 442
Query: 140 KKTVAMHEMFLTRLAQHPVFRLDHQFHV-FLQYNQDL--SVRSKNKMEMLEGFL-----N 191
+ FL + HP FR D+ + F+ +L V+ +++ L +L N
Sbjct: 443 ATNLT----FLEAIIGHPKFR-DNSYTTRFIDTTPELFQQVKRQDRATKLLTYLADVTVN 497
Query: 192 SFSKTTDQVLLSHTVKDHNDFFENENNFLHEYHNHLKE-------ATTRADRM------T 238
+ D+ + N N L R ++ T
Sbjct: 498 GHPEAKDRPKPLENAARPVVPYANGNGVKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTT 557
Query: 239 FKRKDAAKRLLYRRLR 254
+D + LL R+R
Sbjct: 558 M--RDGHQSLLATRMR 571
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607,
structural genomics,protein structure initiative PSI;
NMR {Homo sapiens}
Length = 128
Score = 28.3 bits (63), Expect = 1.6
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 58 EVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQK 111
EV R V R++ EF LH R ++ Y +P P + + L++
Sbjct: 38 EVLCSGRRHTVPRRYSEFHALHKRIKKL-----YKVPDFPSKRLPNWRTRGLEQ 86
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 27.4 bits (60), Expect = 4.3
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 10 LNDDQLV---SGKKSARSENIDLNDNVLIVDISDALSEKEKVKFTVHTKKKEVYF 61
L L K + +D+ D + + + +EK KFT+ K+EV
Sbjct: 41 LRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNS--TEKNCAKFTLVLPKEEVQL 93
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A
{Geobacillus thermodenitrificans}
Length = 461
Score = 27.8 bits (63), Expect = 4.7
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 17/82 (20%)
Query: 81 RFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFI-KMKQELEAEYLAT- 138
R + + G +I P +DS KL T E+ KM + L E+
Sbjct: 377 RLDAGNGFQGAVITPY-----YDSLLVKLSTWAL-----TFEQAARKMLRNLR-EFRIRG 425
Query: 139 FKKTVAMHEMFLTRLAQHPVFR 160
K + FL + QHP F
Sbjct: 426 IKTNIP----FLENVVQHPKFL 443
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco
plant, stromal ascorbate peroxidase, oxidoreductase;
HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1
Length = 295
Score = 27.7 bits (62), Expect = 4.8
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 262 ANRNLERARTKNKDVHAMPPNVSC 285
AN L A K + V+
Sbjct: 66 ANAGLVNALNLLKPIKDKYSGVTY 89
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide;
phosphoprotein, nucleotide-binding, PIK3C2G, membrane,
PX-domain, transferase, ATP-binding; 1.25A {Homo
sapiens}
Length = 127
Score = 26.8 bits (59), Expect = 5.3
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 8/66 (12%)
Query: 49 KFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREK 108
V E ++ E+F LH + + + +A +P P +
Sbjct: 42 LIQVTHSNNETSLTEKS------FEQFSKLHSQLQ--KQFASLTLPEFPHWWHLPFTNSD 93
Query: 109 LQKLGE 114
++ +
Sbjct: 94 HRRFRD 99
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex,
transport protein, phosphatidylinositol 3-phosphate
binding, nucleotide-binding; 2.20A {Homo sapiens}
Length = 134
Score = 26.7 bits (59), Expect = 5.8
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 12/92 (13%)
Query: 28 DLNDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEA 87
DL D + I L + K + ++ L T V R++ F +H +
Sbjct: 1 DLKDPIKISIPRYVLCGQGKDAHFEF--EVKITVLDETWTVFRRYSRFREMHKTLKLK-- 56
Query: 88 YAGYIIPPAPPR-------PDF-DSSREKLQK 111
YA PP+ R L+K
Sbjct: 57 YAELAALEFPPKKLFGNKDERVIAERRSHLEK 88
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Mus musculus}
Length = 358
Score = 27.0 bits (59), Expect = 8.6
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 100 PDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLAT 138
P++D +E + + F K + EY
Sbjct: 30 PNYDDDQENCV-YETVVLPLDETAFEKTLTPIIQEYFEH 67
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 27.2 bits (60), Expect = 8.8
Identities = 13/104 (12%), Positives = 33/104 (31%), Gaps = 6/104 (5%)
Query: 168 FLQYNQDLSVRSKNKMEMLEG---FLNSFSKTTDQVLLSHTVKDHNDFFENENNFLHEYH 224
++ + + + + + F + Q + VK + + + + LH +
Sbjct: 676 YIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQ-FAEYEVKGNVELKDIDRWMLHRLN 734
Query: 225 NHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLER 268
+KE T + + A + Y + L Y +
Sbjct: 735 KAIKETTNALEEFRT--RTAVQWAFYSIMNDLRWYLRRTEGRDD 776
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.384
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,747,978
Number of extensions: 281090
Number of successful extensions: 878
Number of sequences better than 10.0: 1
Number of HSP's gapped: 862
Number of HSP's successfully gapped: 60
Length of query: 313
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 220
Effective length of database: 4,105,140
Effective search space: 903130800
Effective search space used: 903130800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)