RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17232
(313 letters)
>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 132
Score = 57.4 bits (138), Expect = 4e-11
Identities = 16/152 (10%), Positives = 45/152 (29%), Gaps = 34/152 (22%)
Query: 31 DNVLIVDISDALSEKEK--------VKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRF 82
+N L +++ + + + + + F R V R++ +F +
Sbjct: 4 ENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCL 63
Query: 83 EENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKT 142
+ + + P P + + E + +Q L
Sbjct: 64 IKEISMLNHPKVMVPHLPGKILLSNR----------FSNEVIEERRQGLNT--------- 104
Query: 143 VAMHEMFLTRLAQHPVFRLDHQ-FHVFLQYNQ 173
++ +A HP+ + + F++ +
Sbjct: 105 ------WMQSVAGHPLLQSGSKVLVRFIEAEK 130
>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 117
Score = 46.2 bits (109), Expect = 3e-07
Identities = 26/143 (18%), Positives = 42/143 (29%), Gaps = 36/143 (25%)
Query: 34 LIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYII 93
L + + D + V + V T K +Y +++ EF L R E + I
Sbjct: 6 LRIKVDDVKINPKYVLYGVSTPNKRLY---------KRYSEFWKLKTRLERD--VGSTIP 54
Query: 94 PPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRL 153
P +P R + E + + LE FL L
Sbjct: 55 YDFPEKPGVLDRRWQR-------RYDDPEMIDERRIGLER---------------FLNEL 92
Query: 154 AQHPV---FRLDHQFHVFLQYNQ 173
+R FLQ ++
Sbjct: 93 YNDRFDSRWRDTKIAQDFLQLSK 115
>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 116
Score = 38.1 bits (88), Expect = 2e-04
Identities = 26/139 (18%), Positives = 44/139 (31%), Gaps = 34/139 (24%)
Query: 36 VDISDALSEKEKVK-FTVHTKKKEVYFLYRTVIVVRQHEEFVWLHDRFEENEAYAGYIIP 94
V I + +EK K FTV+ K V V R++ EF L++ ++ + +
Sbjct: 7 VSIPSSDEHREKKKRFTVY--KVLVSVGRSEWFVFRRYAEFDKLYNSLKKQ--FPAMALK 62
Query: 95 PAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLA 154
R D +FIK ++ F+ L
Sbjct: 63 IPAKRIFGD---------------NFDPDFIKQRRA--------------GLNEFIQNLV 93
Query: 155 QHPVFRLDHQFHVFLQYNQ 173
++P FLQ +
Sbjct: 94 RYPELYNHPDVRAFLQMDS 112
>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 140
Score = 34.3 bits (78), Expect = 0.005
Identities = 16/128 (12%), Positives = 31/128 (24%), Gaps = 24/128 (18%)
Query: 64 RTVIVVRQHEEFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEE 123
+V R+ E H +E + P +
Sbjct: 35 SEKVVYRRFTEIYEFHKTLKEM--FPIEAGAINPENRIIPHLPAPK--------WFDGQR 84
Query: 124 FIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHVFL-QYNQDLSVRSKNK 182
+ +Q EY +T ++ F DL + + N+
Sbjct: 85 AAENRQGTLTEYCSTL-------------MSLPTKISRCPHLLDFFKVRPDDLKLPTDNQ 131
Query: 183 MEMLEGFL 190
+ E +L
Sbjct: 132 TKKPETYL 139
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase)
{Basidomycetos fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 357
Score = 28.5 bits (63), Expect = 1.3
Identities = 3/24 (12%), Positives = 7/24 (29%)
Query: 262 ANRNLERARTKNKDVHAMPPNVSC 285
AN ++ + +S
Sbjct: 79 ANNGIDDSVNNLIPFMQKHNTISA 102
>d1u5ha_ c.1.12.5 (A:) Citrate lyase, beta subunit {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 223
Score = 27.5 bits (60), Expect = 1.8
Identities = 17/153 (11%), Positives = 37/153 (24%), Gaps = 4/153 (2%)
Query: 16 VSGKKSARSENIDLNDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHEEF 75
+V+I+D+ D ++E +K + + V +
Sbjct: 13 CPADAPEAFAAAAAAADVVILDLEDGVAEAQKPAARNALRDTPLDPERTVVRINAGGTAD 72
Query: 76 VWLHDRFEENEAYAGYIIPPAPPRPD-FDSSREKLQKLGEGEGTMTKEEFIKMKQELEAE 134
AY ++P A + + + L E I
Sbjct: 73 QARDLEALAGTAYTTVMLPKAESAAQVIELAPRDVIALVETARGAVCAAEIAAADPTVG- 131
Query: 135 YLATFKKTVAMHEMFLTRLAQHPVFRLDHQFHV 167
+ + + + + D HV
Sbjct: 132 --MMWGAEDLIATLGGSSSRRADGAYRDVARHV 162
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143
{Enterococcus faecalis [TaxId: 1351]}
Length = 453
Score = 27.4 bits (60), Expect = 2.5
Identities = 21/167 (12%), Positives = 44/167 (26%), Gaps = 8/167 (4%)
Query: 102 FDSSREKLQKLGEGEGTMTKEEFIKMKQELEAEYLATFKKTVAMHEMFLTRLAQHPVFRL 161
D G GT +++ + + A+ + ++R +
Sbjct: 185 MDYLLRDAYFTGTEYGTFDLTRILRVIRPYKGGIAFAMNGMHAVEDYIVSRYQMYVQVYF 244
Query: 162 DHQFHVFLQYNQDLSVRSKNKMEMLEGFLNSFSKTTDQVLLSHTVKDHNDFFENENNFLH 221
L R+K E + + + V ++ + ++ L
Sbjct: 245 HPVSRGMEVILDHLLHRAKELFE--NPEFDYDLQASLLVPFFKGDFTLQEYLKLDDGVLS 302
Query: 222 EYHNHLKEATTRADRMTFKRKDAAKRLLYRRLRCLADYENANRNLER 268
Y + D AKR L R+ A + N +
Sbjct: 303 TYFTQWMDVPDS------ILGDLAKRFLMRKPLKSATFTNEKESAAT 343
>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 143
Score = 26.6 bits (58), Expect = 2.6
Identities = 21/162 (12%), Positives = 42/162 (25%), Gaps = 29/162 (17%)
Query: 14 QLVSGKKSARSENIDLNDNVLIVDISDALSEKEKVKFTVHTKKKEVYFLYRTVIVVRQHE 73
Q + + D+ + I DI + F + K K ++ R++
Sbjct: 4 QQLRAESDFEQLPDDVAISANIADIEEKRGFTSHFVFVIEVKTKG----GSKYLIYRRYR 59
Query: 74 EFVWLHDRFEENEAYAGYIIPPAPPRPDFDSSREKLQKLGEGEGTMTKEEFIKMKQELEA 133
+F L + EE A P + + +E L A
Sbjct: 60 QFHALQSKLEERFGPDSKSSALACTLPTLPAKVY---------VGVKQEIAEMRIPALNA 110
Query: 134 EYLATFKKTVAMHEMFLTRL-AQHPVFRLDHQFHVFLQYNQD 174
++ L + +D +F +
Sbjct: 111 ---------------YMKSLLSLPVWVLMDEDVRIFFYQSPY 137
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 225
Score = 25.7 bits (56), Expect = 7.6
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 255 CLADYENANRNLERARTKNKDVHAMPPNVSCIGDYDVWRTTRMQTGIW-NAPELKTRMS 312
CL N +R R + + + C G+ DVW ++ + L
Sbjct: 45 CLGQLSNVHRTEAIERARLHIGKGV--QLECKGEGDVWVRCLSDHAVFVQSYYLDREAG 101
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal
subdomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 24.7 bits (54), Expect = 7.8
Identities = 8/46 (17%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 116 EGTMTKEEFIKMKQEL--EAEYLATFKKTVAMHEMFLTRLAQHPVF 159
+G M ++ F+ +++ E E K+ + ++L + V+
Sbjct: 5 DGKMERQVFLATWKDIPNENELQFQIKECHLNADTVSSKLQNNNVY 50
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId:
9606]}
Length = 133
Score = 24.9 bits (54), Expect = 8.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 132 EAEYLATFKKTVAMHEMFLTRLAQHP 157
+ L+ F +TV+ E + +A HP
Sbjct: 108 TEDRLSCFAQTVSPAEKWSVHIAMHP 133
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.384
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,146,149
Number of extensions: 53329
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 21
Length of query: 313
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,240,546
Effective search space: 282844488
Effective search space used: 282844488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)