BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17234
         (170 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9CWB7|YD286_MOUSE Glutaredoxin-like protein C5orf63 homolog OS=Mus musculus PE=1 SV=1
          Length = 115

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 51/80 (63%), Gaps = 3/80 (3%)

Query: 59  NFITSQRK-PMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLT-PE-SYWYKLYRYEI 115
           N   S R  P+L LFTK PCPLCDE K  L PY DR  L+EV +T PE S WY+ Y+++I
Sbjct: 21  NLSASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYKFDI 80

Query: 116 PVLFLGGRFVCRNRFNAQIL 135
           PV  L G+F+  +R N   L
Sbjct: 81  PVFHLNGQFLMMHRVNTSKL 100


>sp|A6NC05|YD286_HUMAN Glutaredoxin-like protein C5orf63 OS=Homo sapiens GN=C5orf63 PE=2
          SV=3
          Length = 138

 Score = 42.7 bits (99), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/27 (70%), Positives = 21/27 (77%)

Query: 67 PMLNLFTKDPCPLCDELKLELTPYLDR 93
          P+L LFTKDPCPLCDE K  L PY +R
Sbjct: 31 PVLTLFTKDPCPLCDEAKEVLKPYENR 57


>sp|Q05530|YD286_YEAST Glutaredoxin-like protein YDR286C OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=YDR286C PE=3 SV=1
          Length = 114

 Score = 33.9 bits (76), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 9/61 (14%)

Query: 69  LNLFTKDPCPLCDELKLELTPYLDR-------VHLEEVYLTPE--SYWYKLYRYEIPVLF 119
           L  F+K  C LCD+ K  +    +R       V LE V +T    + W+K Y ++IPVL 
Sbjct: 23  LTFFSKPNCGLCDQAKEVIDDVFERKEFHNKAVSLEIVNITDRRNAKWWKEYCFDIPVLH 82

Query: 120 L 120
           +
Sbjct: 83  I 83


>sp|P51123|TAF1_DROME Transcription initiation factor TFIID subunit 1 OS=Drosophila
            melanogaster GN=Taf1 PE=1 SV=3
          Length = 2129

 Score = 32.0 bits (71), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 14   FITSQRKPMLNLFTKDLKAHQKGIVVYNTPESTMSVLLEKLPVKSNFITSQRKPMLNLFT 73
            +I  +R     +F +DLK      ++YN P+S  ++  +++      + ++R+  L    
Sbjct: 1523 YIRQRRYTSREMFLEDLKQIVDNSLIYNGPQSAYTLAAQRMFSSCFELLAEREDKLMRLE 1582

Query: 74   KDPCPLC-DELKLELTPYLDRVHLEEVYLTPESY 106
            K   PL  D+ ++ L+   D++H  ++   PES+
Sbjct: 1583 KAINPLLDDDDQVALSFIFDKLH-SQIKQLPESW 1615


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,251,465
Number of Sequences: 539616
Number of extensions: 2371825
Number of successful extensions: 5031
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5026
Number of HSP's gapped (non-prelim): 8
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)