Query psy17234
Match_columns 170
No_of_seqs 205 out of 1156
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 16:45:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05768 DUF836: Glutaredoxin- 99.8 9.4E-21 2E-25 134.6 9.0 73 68-140 1-81 (81)
2 PRK10329 glutaredoxin-like pro 99.6 4E-15 8.6E-20 106.3 9.8 71 67-141 1-75 (81)
3 TIGR02189 GlrX-like_plant Glut 99.6 5.9E-15 1.3E-19 108.9 7.0 76 66-145 7-97 (99)
4 PRK11200 grxA glutaredoxin 1; 99.5 4.8E-14 1E-18 99.9 9.6 70 67-140 1-80 (85)
5 TIGR02194 GlrX_NrdH Glutaredox 99.5 2.5E-14 5.5E-19 98.6 7.5 67 69-138 1-71 (72)
6 TIGR02190 GlrX-dom Glutaredoxi 99.5 6.4E-14 1.4E-18 98.5 9.0 70 64-139 5-78 (79)
7 TIGR02183 GRXA Glutaredoxin, G 99.5 1.2E-13 2.7E-18 98.9 9.2 69 69-141 2-80 (86)
8 COG0695 GrxC Glutaredoxin and 99.5 1.1E-13 2.4E-18 98.8 8.4 70 67-139 1-77 (80)
9 cd03029 GRX_hybridPRX5 Glutare 99.5 1.3E-13 2.9E-18 94.5 8.4 66 68-139 2-71 (72)
10 cd02973 TRX_GRX_like Thioredox 99.4 3.3E-13 7.1E-18 90.7 6.6 62 68-129 2-67 (67)
11 cd03418 GRX_GRXb_1_3_like Glut 99.4 7.6E-13 1.7E-17 90.3 7.5 56 68-125 1-62 (75)
12 TIGR02181 GRX_bact Glutaredoxi 99.4 5.6E-13 1.2E-17 92.5 6.8 55 69-125 1-60 (79)
13 PF00462 Glutaredoxin: Glutare 99.4 1E-12 2.2E-17 87.3 7.2 55 69-125 1-60 (60)
14 TIGR00411 redox_disulf_1 small 99.4 1.7E-12 3.7E-17 89.2 8.4 75 68-142 2-81 (82)
15 PHA03050 glutaredoxin; Provisi 99.4 1.2E-12 2.6E-17 98.5 7.2 60 66-125 12-80 (108)
16 TIGR02196 GlrX_YruB Glutaredox 99.4 3.5E-12 7.5E-17 84.7 8.5 68 69-140 2-74 (74)
17 cd03027 GRX_DEP Glutaredoxin ( 99.4 2.8E-12 6E-17 88.3 7.8 56 68-125 2-62 (73)
18 PRK10638 glutaredoxin 3; Provi 99.3 3E-12 6.6E-17 90.4 7.2 56 68-125 3-63 (83)
19 cd02976 NrdH NrdH-redoxin (Nrd 99.3 1.9E-11 4.1E-16 81.1 7.9 68 68-139 1-73 (73)
20 TIGR00365 monothiol glutaredox 99.3 1.5E-11 3.2E-16 90.4 7.5 58 66-125 11-78 (97)
21 TIGR02180 GRX_euk Glutaredoxin 99.3 4.6E-11 9.9E-16 82.4 8.6 68 69-140 1-76 (84)
22 cd03028 GRX_PICOT_like Glutare 99.3 2.2E-11 4.7E-16 87.9 7.2 58 66-125 7-74 (90)
23 cd03419 GRX_GRXh_1_2_like Glut 99.2 7.8E-11 1.7E-15 81.2 9.1 58 68-125 1-64 (82)
24 cd02066 GRX_family Glutaredoxi 99.2 3.7E-11 8E-16 79.1 7.0 57 68-126 1-62 (72)
25 TIGR02200 GlrX_actino Glutared 99.2 7.4E-11 1.6E-15 79.9 8.5 69 68-140 1-76 (77)
26 TIGR00412 redox_disulf_2 small 99.2 6E-11 1.3E-15 83.1 7.6 72 67-140 1-76 (76)
27 PRK10824 glutaredoxin-4; Provi 99.2 6.2E-11 1.3E-15 90.7 7.1 58 66-125 14-81 (115)
28 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 1.1E-10 2.3E-15 84.8 7.4 73 64-136 11-87 (89)
29 PRK12759 bifunctional gluaredo 99.1 9.7E-11 2.1E-15 105.5 7.5 64 67-134 2-78 (410)
30 KOG1752|consensus 99.1 1.5E-10 3.2E-15 87.3 5.7 60 66-125 13-78 (104)
31 cd03031 GRX_GRX_like Glutaredo 99.1 2.7E-10 5.8E-15 90.4 5.8 56 68-125 1-71 (147)
32 PF13192 Thioredoxin_3: Thiore 99.0 1.2E-09 2.6E-14 76.4 6.7 72 67-140 1-76 (76)
33 KOG0910|consensus 99.0 2.7E-09 5.8E-14 85.4 8.0 81 64-144 60-149 (150)
34 cd02975 PfPDO_like_N Pyrococcu 98.9 4E-09 8.7E-14 78.8 8.3 75 68-142 25-109 (113)
35 PHA02125 thioredoxin-like prot 98.9 5.3E-09 1.1E-13 72.7 7.9 69 69-140 2-74 (75)
36 PTZ00062 glutaredoxin; Provisi 98.9 4.6E-09 9.9E-14 87.3 7.7 62 66-131 112-183 (204)
37 TIGR02187 GlrX_arch Glutaredox 98.8 1.1E-08 2.3E-13 84.0 7.7 78 64-141 132-214 (215)
38 cd02949 TRX_NTR TRX domain, no 98.8 1.7E-08 3.8E-13 72.4 7.6 77 64-140 12-97 (97)
39 PF00085 Thioredoxin: Thioredo 98.8 4.8E-08 1E-12 68.6 8.8 77 65-141 17-102 (103)
40 TIGR01295 PedC_BrcD bacterioci 98.7 6.9E-08 1.5E-12 73.5 8.4 76 65-140 23-121 (122)
41 PHA02278 thioredoxin-like prot 98.7 1.1E-07 2.4E-12 70.7 9.1 75 64-138 13-100 (103)
42 cd02956 ybbN ybbN protein fami 98.7 9.9E-08 2.1E-12 67.5 8.2 76 65-140 12-96 (96)
43 COG3118 Thioredoxin domain-con 98.7 3.3E-08 7.1E-13 86.7 6.8 83 63-145 41-132 (304)
44 PRK10996 thioredoxin 2; Provis 98.7 1.4E-07 2.9E-12 72.9 8.9 79 64-142 51-138 (139)
45 cd02954 DIM1 Dim1 family; Dim1 98.7 4.7E-08 1E-12 74.8 6.2 70 66-135 15-93 (114)
46 TIGR03143 AhpF_homolog putativ 98.6 8.7E-08 1.9E-12 88.7 8.2 77 64-140 475-555 (555)
47 PRK09381 trxA thioredoxin; Pro 98.6 2.5E-07 5.5E-12 67.1 8.7 79 65-143 21-108 (109)
48 cd02948 TRX_NDPK TRX domain, T 98.6 2.4E-07 5.3E-12 67.3 8.5 77 64-141 16-101 (102)
49 cd02963 TRX_DnaJ TRX domain, D 98.6 2E-07 4.3E-12 69.0 8.0 78 64-141 23-110 (111)
50 cd02985 TRX_CDSP32 TRX family, 98.6 3.3E-07 7.1E-12 66.9 9.0 78 65-142 15-102 (103)
51 cd02989 Phd_like_TxnDC9 Phosdu 98.6 4E-07 8.7E-12 68.1 8.7 75 65-139 22-112 (113)
52 cd02947 TRX_family TRX family; 98.6 4.8E-07 1E-11 60.8 8.2 74 66-139 11-92 (93)
53 cd02984 TRX_PICOT TRX domain, 98.6 3.3E-07 7.2E-12 64.6 7.4 74 66-139 15-96 (97)
54 PRK15317 alkyl hydroperoxide r 98.5 2.5E-07 5.4E-12 84.7 8.0 79 64-142 115-197 (517)
55 cd03040 GST_N_mPGES2 GST_N fam 98.5 4.4E-07 9.5E-12 62.2 7.0 69 68-142 1-75 (77)
56 TIGR01068 thioredoxin thioredo 98.5 6.3E-07 1.4E-11 62.5 7.6 76 66-141 15-99 (101)
57 cd03041 GST_N_2GST_N GST_N fam 98.5 1E-06 2.3E-11 61.0 8.7 67 69-141 2-75 (77)
58 cd02965 HyaE HyaE family; HyaE 98.5 6.7E-07 1.5E-11 68.2 8.1 74 64-137 26-110 (111)
59 cd02953 DsbDgamma DsbD gamma f 98.5 3.6E-07 7.8E-12 65.9 6.0 76 65-140 11-104 (104)
60 TIGR03140 AhpF alkyl hydropero 98.5 5.2E-07 1.1E-11 82.7 8.2 79 64-142 116-198 (515)
61 cd02994 PDI_a_TMX PDIa family, 98.4 9.8E-07 2.1E-11 63.0 7.5 73 68-140 19-100 (101)
62 cd02951 SoxW SoxW family; SoxW 98.4 1.5E-06 3.3E-11 64.6 8.8 79 66-144 15-120 (125)
63 cd00570 GST_N_family Glutathio 98.4 1.5E-06 3.2E-11 55.8 7.5 67 69-139 1-70 (71)
64 cd02957 Phd_like Phosducin (Ph 98.4 9.5E-07 2.1E-11 65.3 7.4 73 66-139 25-112 (113)
65 TIGR01126 pdi_dom protein disu 98.4 1.3E-06 2.7E-11 61.4 7.5 79 64-142 12-101 (102)
66 cd03000 PDI_a_TMX3 PDIa family 98.4 1E-06 2.2E-11 63.8 7.1 79 65-143 15-104 (104)
67 PTZ00051 thioredoxin; Provisio 98.4 1.3E-06 2.8E-11 61.7 7.4 73 65-137 18-97 (98)
68 TIGR02187 GlrX_arch Glutaredox 98.4 1.6E-06 3.5E-11 71.1 8.8 78 65-142 19-110 (215)
69 cd03003 PDI_a_ERdj5_N PDIa fam 98.4 1.1E-06 2.4E-11 63.0 6.4 73 65-137 18-99 (101)
70 cd03004 PDI_a_ERdj5_C PDIa fam 98.4 1E-06 2.3E-11 63.2 6.1 75 65-139 19-104 (104)
71 PF13098 Thioredoxin_2: Thiore 98.4 1.5E-06 3.2E-11 62.9 6.7 76 64-139 4-112 (112)
72 cd03059 GST_N_SspA GST_N famil 98.3 2.8E-06 6.1E-11 57.1 7.5 69 69-141 1-71 (73)
73 cd02950 TxlA TRX-like protein 98.3 2.4E-06 5.2E-11 66.4 8.1 81 64-144 19-111 (142)
74 cd02996 PDI_a_ERp44 PDIa famil 98.3 2.4E-06 5.2E-11 62.0 7.2 74 66-139 19-108 (108)
75 cd02997 PDI_a_PDIR PDIa family 98.3 1.9E-06 4.2E-11 60.9 6.5 75 65-139 17-104 (104)
76 KOG0907|consensus 98.3 2.8E-06 6.1E-11 63.9 7.7 77 66-142 22-105 (106)
77 cd03065 PDI_b_Calsequestrin_N 98.3 6.2E-06 1.3E-10 63.3 8.9 79 64-142 26-118 (120)
78 cd03006 PDI_a_EFP1_N PDIa fami 98.3 4.7E-06 1E-10 63.0 7.7 75 64-138 28-112 (113)
79 PLN00410 U5 snRNP protein, DIM 98.3 6.3E-06 1.4E-10 65.3 8.7 80 65-144 23-121 (142)
80 cd02999 PDI_a_ERp44_like PDIa 98.3 3.5E-06 7.5E-11 61.6 6.7 75 64-138 17-99 (100)
81 cd02961 PDI_a_family Protein D 98.2 6E-06 1.3E-10 56.7 7.5 73 66-138 16-100 (101)
82 cd02987 Phd_like_Phd Phosducin 98.2 6.1E-06 1.3E-10 66.6 8.1 76 66-142 84-174 (175)
83 cd03001 PDI_a_P5 PDIa family, 98.2 4.9E-06 1.1E-10 58.9 6.5 75 65-139 18-102 (103)
84 cd03037 GST_N_GRX2 GST_N famil 98.2 6.8E-06 1.5E-10 55.5 6.8 65 70-140 2-70 (71)
85 cd03002 PDI_a_MPD1_like PDI fa 98.2 4.7E-06 1E-10 59.8 6.3 76 64-139 17-108 (109)
86 cd03055 GST_N_Omega GST_N fami 98.2 9.6E-06 2.1E-10 57.8 7.7 70 66-139 16-88 (89)
87 cd03005 PDI_a_ERp46 PDIa famil 98.2 5.2E-06 1.1E-10 58.6 6.2 73 67-139 18-102 (102)
88 cd03060 GST_N_Omega_like GST_N 98.1 1.4E-05 3E-10 54.2 7.5 56 70-125 2-60 (71)
89 cd03045 GST_N_Delta_Epsilon GS 98.1 1.7E-05 3.7E-10 53.5 7.9 68 69-140 1-73 (74)
90 PTZ00443 Thioredoxin domain-co 98.1 1.1E-05 2.4E-10 67.9 8.4 82 66-147 53-143 (224)
91 cd02998 PDI_a_ERp38 PDIa famil 98.1 8.1E-06 1.8E-10 57.5 6.1 74 66-139 19-105 (105)
92 cd02986 DLP Dim1 family, Dim1- 98.1 6.1E-06 1.3E-10 63.4 5.8 61 65-125 14-81 (114)
93 cd03051 GST_N_GTT2_like GST_N 98.1 1.9E-05 4.1E-10 52.6 7.5 67 69-139 1-73 (74)
94 cd02977 ArsC_family Arsenate R 98.1 3.5E-06 7.6E-11 61.8 4.1 71 69-141 1-85 (105)
95 cd02962 TMX2 TMX2 family; comp 98.1 1.5E-05 3.2E-10 63.4 7.8 60 66-125 48-121 (152)
96 cd03036 ArsC_like Arsenate Red 98.1 4.9E-06 1.1E-10 62.3 4.5 34 69-104 1-34 (111)
97 PRK13344 spxA transcriptional 98.0 3.8E-05 8.3E-10 59.6 8.9 34 69-104 2-35 (132)
98 PF02803 Thiolase_C: Thiolase, 98.0 4.3E-07 9.3E-12 70.2 -2.2 39 15-53 82-123 (123)
99 PF13417 GST_N_3: Glutathione 98.0 4.3E-05 9.3E-10 52.5 7.3 71 71-145 1-73 (75)
100 cd03056 GST_N_4 GST_N family, 97.9 7.8E-05 1.7E-09 49.7 7.7 65 69-139 1-72 (73)
101 PRK01655 spxA transcriptional 97.9 1.6E-05 3.5E-10 61.4 4.8 34 69-104 2-35 (131)
102 cd02982 PDI_b'_family Protein 97.9 3.3E-05 7.1E-10 54.8 6.0 77 66-142 13-102 (103)
103 cd01659 TRX_superfamily Thiore 97.9 3.7E-05 8E-10 46.6 5.2 53 69-121 1-60 (69)
104 cd02995 PDI_a_PDI_a'_C PDIa fa 97.8 4.6E-05 1E-09 53.6 5.7 73 65-138 18-103 (104)
105 PTZ00102 disulphide isomerase; 97.8 9.4E-05 2E-09 65.9 8.6 88 64-151 48-146 (477)
106 TIGR01617 arsC_related transcr 97.8 3.3E-05 7.1E-10 58.1 4.6 34 69-104 1-34 (117)
107 TIGR02740 TraF-like TraF-like 97.8 0.00012 2.7E-09 62.9 8.4 80 65-144 166-265 (271)
108 cd03033 ArsC_15kD Arsenate Red 97.8 0.00016 3.5E-09 54.8 8.1 34 69-104 2-35 (113)
109 cd03058 GST_N_Tau GST_N family 97.8 0.00022 4.7E-09 48.4 7.9 69 69-141 1-72 (74)
110 TIGR01130 ER_PDI_fam protein d 97.7 0.00013 2.9E-09 63.9 8.4 85 65-149 18-115 (462)
111 cd03032 ArsC_Spx Arsenate Redu 97.7 5.7E-05 1.2E-09 56.7 5.2 34 69-104 2-35 (115)
112 PF14595 Thioredoxin_9: Thiore 97.7 2.9E-05 6.2E-10 60.1 3.0 78 64-141 40-127 (129)
113 PLN02287 3-ketoacyl-CoA thiola 97.7 4.3E-06 9.3E-11 76.6 -1.9 44 14-57 390-438 (452)
114 cd02993 PDI_a_APS_reductase PD 97.7 0.00024 5.1E-09 52.0 7.6 74 65-138 21-108 (109)
115 cd03030 GRX_SH3BGR Glutaredoxi 97.7 0.00012 2.6E-09 53.8 5.8 53 79-137 18-79 (92)
116 PRK12559 transcriptional regul 97.6 9.2E-05 2E-09 57.4 5.0 34 69-104 2-35 (131)
117 cd02952 TRP14_like Human TRX-r 97.6 0.00015 3.4E-09 55.6 6.0 73 65-137 21-116 (119)
118 PTZ00062 glutaredoxin; Provisi 97.6 0.00027 5.8E-09 58.9 7.9 71 66-144 18-95 (204)
119 cd02955 SSP411 TRX domain, SSP 97.6 0.00028 6.1E-09 54.3 7.1 60 66-125 16-94 (124)
120 cd03035 ArsC_Yffb Arsenate Red 97.6 0.00013 2.7E-09 54.5 4.8 34 69-104 1-34 (105)
121 cd02988 Phd_like_VIAF Phosduci 97.5 0.00035 7.5E-09 57.4 7.5 74 66-142 103-191 (192)
122 TIGR00014 arsC arsenate reduct 97.5 0.00055 1.2E-08 51.6 8.1 34 69-104 1-34 (114)
123 cd03061 GST_N_CLIC GST_N famil 97.5 0.00054 1.2E-08 50.5 7.7 67 74-144 19-87 (91)
124 cd03053 GST_N_Phi GST_N family 97.5 0.00091 2E-08 45.3 8.4 68 69-140 2-74 (76)
125 PRK10877 protein disulfide iso 97.5 0.00038 8.2E-09 58.5 7.6 79 64-143 106-231 (232)
126 TIGR02738 TrbB type-F conjugat 97.5 0.00052 1.1E-08 54.5 8.0 79 64-142 49-152 (153)
127 PRK13728 conjugal transfer pro 97.5 0.00047 1E-08 56.7 7.9 78 68-145 72-173 (181)
128 cd03052 GST_N_GDAP1 GST_N fami 97.5 0.00073 1.6E-08 46.6 7.7 67 69-139 1-72 (73)
129 TIGR01616 nitro_assoc nitrogen 97.5 0.00075 1.6E-08 52.2 8.5 73 68-144 2-118 (126)
130 PRK00293 dipZ thiol:disulfide 97.5 0.00053 1.2E-08 64.5 8.5 77 65-142 474-569 (571)
131 cd02959 ERp19 Endoplasmic reti 97.4 0.00025 5.4E-09 53.4 4.9 62 64-125 18-90 (117)
132 PTZ00102 disulphide isomerase; 97.4 0.00055 1.2E-08 61.1 7.5 82 64-145 374-467 (477)
133 PRK09481 sspA stringent starva 97.3 0.0016 3.5E-08 52.6 8.5 71 67-141 9-81 (211)
134 PF13899 Thioredoxin_7: Thiore 97.3 0.0004 8.6E-09 48.5 4.3 56 64-119 16-78 (82)
135 KOG1389|consensus 97.3 5.8E-05 1.3E-09 67.7 -0.1 42 15-56 380-426 (435)
136 cd03049 GST_N_3 GST_N family, 97.2 0.0014 3E-08 44.2 6.5 67 69-139 1-72 (73)
137 cd03020 DsbA_DsbC_DsbG DsbA fa 97.2 0.0013 2.9E-08 52.9 7.5 41 49-89 59-101 (197)
138 COG1393 ArsC Arsenate reductas 97.2 0.0021 4.6E-08 49.2 8.2 36 67-104 1-36 (117)
139 PRK15412 thiol:disulfide inter 97.2 0.002 4.4E-08 51.6 8.4 82 64-145 67-178 (185)
140 PF13728 TraF: F plasmid trans 97.2 0.0014 3E-08 54.7 7.6 74 66-139 121-214 (215)
141 cd03054 GST_N_Metaxin GST_N fa 97.2 0.0021 4.6E-08 43.4 7.2 56 76-140 15-70 (72)
142 TIGR00385 dsbE periplasmic pro 97.2 0.0038 8.2E-08 49.3 9.4 79 64-142 62-170 (173)
143 cd03042 GST_N_Zeta GST_N famil 97.1 0.0043 9.2E-08 41.3 7.7 67 69-139 1-72 (73)
144 PRK11509 hydrogenase-1 operon 97.1 0.0033 7.2E-08 49.4 8.0 80 67-146 36-127 (132)
145 cd03011 TlpA_like_ScsD_MtbDsbE 97.1 0.0029 6.2E-08 46.1 7.3 76 64-139 19-122 (123)
146 COG0278 Glutaredoxin-related p 97.1 0.00093 2E-08 50.7 4.6 58 67-125 15-82 (105)
147 PLN02309 5'-adenylylsulfate re 97.0 0.0025 5.5E-08 59.0 8.1 78 65-142 365-456 (457)
148 PRK03147 thiol-disulfide oxido 97.0 0.0036 7.7E-08 48.3 7.8 79 64-142 60-171 (173)
149 cd03038 GST_N_etherase_LigE GS 97.0 0.0026 5.6E-08 44.3 6.3 64 74-141 13-81 (84)
150 TIGR00424 APS_reduc 5'-adenyly 97.0 0.0025 5.5E-08 59.1 8.0 78 65-142 371-462 (463)
151 cd03048 GST_N_Ure2p_like GST_N 97.0 0.0088 1.9E-07 41.1 8.6 69 69-142 2-78 (81)
152 cd03050 GST_N_Theta GST_N fami 97.0 0.0078 1.7E-07 40.9 8.2 68 69-140 1-73 (76)
153 COG4545 Glutaredoxin-related p 97.0 0.0016 3.6E-08 47.3 4.9 55 70-126 5-77 (85)
154 PRK10387 glutaredoxin 2; Provi 96.9 0.0044 9.5E-08 49.3 7.5 68 69-142 1-72 (210)
155 cd03044 GST_N_EF1Bgamma GST_N 96.9 0.0065 1.4E-07 41.4 7.4 67 70-140 2-73 (75)
156 cd02958 UAS UAS family; UAS is 96.9 0.0093 2E-07 43.8 8.5 78 65-142 17-110 (114)
157 PRK15113 glutathione S-transfe 96.9 0.01 2.2E-07 47.9 9.3 60 66-125 3-69 (214)
158 cd02992 PDI_a_QSOX PDIa family 96.8 0.0024 5.1E-08 47.6 5.1 58 66-123 20-89 (114)
159 cd03080 GST_N_Metaxin_like GST 96.8 0.0072 1.6E-07 41.3 7.1 63 69-141 2-72 (75)
160 cd03010 TlpA_like_DsbE TlpA-li 96.8 0.0042 9.1E-08 45.8 6.2 39 64-102 24-64 (127)
161 cd03076 GST_N_Pi GST_N family, 96.8 0.006 1.3E-07 41.6 6.5 66 69-140 2-71 (73)
162 cd03007 PDI_a_ERp29_N PDIa fam 96.8 0.01 2.2E-07 45.5 8.1 78 64-141 17-114 (116)
163 cd03057 GST_N_Beta GST_N famil 96.7 0.015 3.3E-07 39.5 8.1 67 69-140 1-73 (77)
164 TIGR02182 GRXB Glutaredoxin, G 96.7 0.0088 1.9E-07 48.5 7.9 66 70-141 1-70 (209)
165 KOG0908|consensus 96.7 0.0052 1.1E-07 53.6 6.5 78 67-144 23-107 (288)
166 TIGR01130 ER_PDI_fam protein d 96.6 0.0071 1.5E-07 53.1 7.4 78 64-143 363-454 (462)
167 PHA03075 glutaredoxin-like pro 96.6 0.0028 6E-08 49.3 4.2 38 66-103 2-39 (123)
168 cd03039 GST_N_Sigma_like GST_N 96.6 0.011 2.3E-07 39.8 6.4 65 69-139 1-70 (72)
169 COG5494 Predicted thioredoxin/ 96.6 0.011 2.4E-07 50.6 7.7 75 66-140 10-85 (265)
170 COG2143 Thioredoxin-related pr 96.5 0.016 3.5E-07 47.6 8.1 81 65-145 42-151 (182)
171 PRK14018 trifunctional thiored 96.5 0.0085 1.9E-07 56.4 7.4 77 64-140 55-170 (521)
172 cd03034 ArsC_ArsC Arsenate Red 96.5 0.0049 1.1E-07 46.2 4.6 34 69-104 1-34 (112)
173 COG0526 TrxA Thiol-disulfide i 96.4 0.0057 1.2E-07 41.0 4.3 57 68-124 35-101 (127)
174 PRK10026 arsenate reductase; P 96.4 0.0066 1.4E-07 48.1 5.2 36 67-104 2-37 (141)
175 PLN02473 glutathione S-transfe 96.3 0.034 7.3E-07 44.5 8.6 58 68-125 2-64 (214)
176 cd03047 GST_N_2 GST_N family, 96.2 0.038 8.3E-07 37.2 7.6 67 69-139 1-72 (73)
177 PF07315 DUF1462: Protein of u 96.2 0.024 5.2E-07 42.3 7.0 71 70-140 1-93 (93)
178 cd03046 GST_N_GTT1_like GST_N 96.2 0.044 9.5E-07 36.7 7.7 67 70-141 2-73 (76)
179 PRK10853 putative reductase; P 96.2 0.0097 2.1E-07 45.4 4.9 34 69-104 2-35 (118)
180 cd03009 TryX_like_TryX_NRX Try 96.2 0.038 8.3E-07 41.0 8.0 40 65-104 18-64 (131)
181 cd02966 TlpA_like_family TlpA- 96.2 0.011 2.3E-07 40.8 4.7 40 65-104 19-63 (116)
182 cd02960 AGR Anterior Gradient 96.1 0.0089 1.9E-07 46.8 4.5 58 64-121 22-87 (130)
183 KOG0911|consensus 96.0 0.012 2.6E-07 50.2 5.0 85 39-125 106-205 (227)
184 TIGR02661 MauD methylamine deh 96.0 0.054 1.2E-06 43.6 8.6 79 64-142 73-178 (189)
185 TIGR02739 TraF type-F conjugat 95.9 0.033 7.2E-07 48.1 7.5 77 67-143 152-248 (256)
186 PRK13703 conjugal pilus assemb 95.9 0.032 7E-07 48.0 7.4 78 66-143 144-241 (248)
187 PLN02378 glutathione S-transfe 95.8 0.039 8.4E-07 44.8 7.3 63 75-141 18-82 (213)
188 cd02967 mauD Methylamine utili 95.8 0.0086 1.9E-07 43.0 3.0 54 65-119 21-83 (114)
189 PF02798 GST_N: Glutathione S- 95.8 0.13 2.9E-06 35.3 8.8 67 67-139 1-74 (76)
190 PF04908 SH3BGR: SH3-binding, 95.5 0.012 2.5E-07 44.1 2.8 56 68-125 2-77 (99)
191 PF08534 Redoxin: Redoxin; In 95.5 0.065 1.4E-06 40.3 6.9 56 64-119 27-91 (146)
192 PLN02395 glutathione S-transfe 95.5 0.13 2.8E-06 41.0 8.9 70 67-141 1-75 (215)
193 cd03077 GST_N_Alpha GST_N fami 95.5 0.13 2.8E-06 35.7 7.8 67 69-141 2-74 (79)
194 TIGR00862 O-ClC intracellular 95.5 0.076 1.6E-06 45.0 7.8 68 74-145 16-85 (236)
195 PF06764 DUF1223: Protein of u 95.4 0.022 4.7E-07 47.6 4.4 76 69-145 2-100 (202)
196 KOG3029|consensus 95.4 0.055 1.2E-06 48.2 7.0 69 64-140 86-158 (370)
197 cd02964 TryX_like_family Trypa 95.4 0.087 1.9E-06 39.4 7.2 41 64-104 16-63 (132)
198 COG4837 Uncharacterized protei 95.3 0.11 2.4E-06 39.3 7.4 76 66-141 4-101 (106)
199 PLN02817 glutathione dehydroge 95.3 0.079 1.7E-06 45.4 7.4 64 74-141 70-135 (265)
200 cd02969 PRX_like1 Peroxiredoxi 95.3 0.13 2.7E-06 40.2 8.0 84 64-147 24-156 (171)
201 PF13409 GST_N_2: Glutathione 95.2 0.089 1.9E-06 35.6 6.0 62 76-141 1-69 (70)
202 KOG0190|consensus 94.9 0.039 8.6E-07 51.8 5.0 81 66-146 43-135 (493)
203 TIGR03143 AhpF_homolog putativ 94.9 0.11 2.3E-06 48.5 7.8 76 67-142 368-453 (555)
204 KOG1422|consensus 94.9 0.12 2.7E-06 43.9 7.4 65 76-144 20-86 (221)
205 PLN02919 haloacid dehalogenase 94.9 0.11 2.3E-06 52.6 8.1 78 65-142 420-535 (1057)
206 smart00594 UAS UAS domain. 94.8 0.25 5.4E-06 37.0 8.2 75 65-139 27-121 (122)
207 TIGR01262 maiA maleylacetoacet 94.7 0.14 3E-06 40.6 6.9 56 70-125 1-62 (210)
208 COG3019 Predicted metal-bindin 94.6 0.34 7.5E-06 38.9 8.9 74 66-142 25-103 (149)
209 PTZ00056 glutathione peroxidas 94.6 0.15 3.3E-06 41.7 7.2 39 64-102 38-81 (199)
210 PF13905 Thioredoxin_8: Thiore 94.6 0.094 2E-06 36.5 5.2 45 66-110 2-53 (95)
211 COG0625 Gst Glutathione S-tran 94.6 0.18 4E-06 40.3 7.5 74 69-146 1-79 (211)
212 PF06110 DUF953: Eukaryotic pr 94.5 0.071 1.5E-06 41.1 4.7 48 73-120 34-95 (119)
213 KOG0406|consensus 94.4 0.1 2.2E-06 44.7 5.7 59 67-125 8-69 (231)
214 KOG4277|consensus 94.3 0.06 1.3E-06 48.6 4.3 107 51-158 30-147 (468)
215 cd03008 TryX_like_RdCVF Trypar 94.3 0.078 1.7E-06 42.0 4.5 42 64-105 24-77 (146)
216 KOG2824|consensus 94.2 0.11 2.4E-06 45.6 5.7 75 67-143 131-225 (281)
217 PRK10357 putative glutathione 94.0 0.22 4.7E-06 39.4 6.7 66 69-140 1-71 (202)
218 PF03960 ArsC: ArsC family; I 94.0 0.1 2.2E-06 38.6 4.4 31 72-104 1-31 (110)
219 PF03190 Thioredox_DsbH: Prote 93.9 0.2 4.2E-06 40.8 6.3 63 66-128 38-119 (163)
220 cd03012 TlpA_like_DipZ_like Tl 93.9 0.14 3.1E-06 37.9 5.1 56 64-119 22-91 (126)
221 cd02970 PRX_like2 Peroxiredoxi 93.9 0.13 2.9E-06 38.1 5.0 55 67-121 25-88 (149)
222 PF00578 AhpC-TSA: AhpC/TSA fa 93.9 0.14 3.1E-06 36.9 5.0 56 65-120 25-89 (124)
223 PLN02412 probable glutathione 93.6 0.32 6.9E-06 38.4 6.9 38 65-102 29-71 (167)
224 cd03018 PRX_AhpE_like Peroxire 93.4 0.12 2.7E-06 38.7 4.1 51 69-119 33-91 (149)
225 PLN02399 phospholipid hydroper 93.4 0.37 8.1E-06 41.0 7.4 39 64-102 98-141 (236)
226 PRK11657 dsbG disulfide isomer 93.3 0.12 2.6E-06 43.9 4.2 36 64-99 116-153 (251)
227 cd03043 GST_N_1 GST_N family, 93.0 0.72 1.6E-05 31.3 7.2 53 73-125 6-62 (73)
228 PRK13972 GSH-dependent disulfi 93.0 0.73 1.6E-05 37.0 8.3 51 69-120 2-57 (215)
229 KOG3425|consensus 92.7 0.11 2.4E-06 40.8 2.9 48 73-120 41-101 (128)
230 TIGR01626 ytfJ_HI0045 conserve 92.6 0.18 3.8E-06 41.5 4.2 41 64-104 58-105 (184)
231 cd03017 PRX_BCP Peroxiredoxin 92.1 0.27 5.9E-06 36.3 4.4 54 66-119 24-86 (140)
232 PF06953 ArsD: Arsenical resis 92.1 0.82 1.8E-05 35.5 7.1 61 84-146 33-106 (123)
233 PRK11752 putative S-transferas 91.6 1.4 3E-05 37.2 8.7 53 68-121 44-107 (264)
234 KOG0191|consensus 91.0 0.55 1.2E-05 41.7 5.9 82 60-141 42-132 (383)
235 cd03023 DsbA_Com1_like DsbA fa 91.0 0.27 5.7E-06 36.4 3.3 38 64-101 4-44 (154)
236 cd02972 DsbA_family DsbA famil 90.5 0.31 6.7E-06 32.7 3.0 33 69-101 1-37 (98)
237 cd02971 PRX_family Peroxiredox 90.4 0.59 1.3E-05 34.4 4.7 55 65-119 22-86 (140)
238 COG4232 Thiol:disulfide interc 90.4 0.72 1.6E-05 44.2 6.3 77 67-143 476-568 (569)
239 cd03075 GST_N_Mu GST_N family, 89.9 2.1 4.6E-05 29.8 7.0 59 78-140 10-79 (82)
240 TIGR02540 gpx7 putative glutat 89.3 0.58 1.3E-05 35.9 4.1 38 64-101 21-63 (153)
241 cd03014 PRX_Atyp2cys Peroxired 89.3 0.78 1.7E-05 34.3 4.6 54 65-118 26-87 (143)
242 cd00340 GSH_Peroxidase Glutath 89.0 0.73 1.6E-05 35.4 4.4 55 64-119 21-92 (152)
243 COG3634 AhpF Alkyl hydroperoxi 87.8 1.3 2.9E-05 41.0 5.9 78 64-141 115-196 (520)
244 PTZ00057 glutathione s-transfe 87.5 4.7 0.0001 32.2 8.4 68 67-140 3-80 (205)
245 cd02968 SCO SCO (an acronym fo 87.1 1.6 3.5E-05 32.2 5.1 40 64-103 21-69 (142)
246 COG2999 GrxB Glutaredoxin 2 [P 86.8 0.8 1.7E-05 38.5 3.6 56 70-125 2-59 (215)
247 COG5429 Uncharacterized secret 86.4 0.89 1.9E-05 39.5 3.7 79 66-145 42-143 (261)
248 KOG0190|consensus 85.5 0.53 1.2E-05 44.3 2.1 77 67-144 386-474 (493)
249 PF13462 Thioredoxin_4: Thiore 84.9 2.2 4.8E-05 32.0 5.0 42 63-104 10-57 (162)
250 KOG0867|consensus 84.8 5.6 0.00012 33.0 7.7 71 67-141 1-76 (226)
251 PRK10542 glutathionine S-trans 84.6 5.9 0.00013 31.0 7.5 65 70-140 2-74 (201)
252 KOG0913|consensus 84.4 0.54 1.2E-05 40.7 1.5 81 67-147 41-130 (248)
253 PRK13190 putative peroxiredoxi 84.1 9.4 0.0002 31.1 8.7 89 71-159 34-174 (202)
254 KOG1695|consensus 83.7 5.4 0.00012 33.5 7.2 68 67-140 2-73 (206)
255 PRK09437 bcp thioredoxin-depen 83.1 2.2 4.8E-05 32.4 4.3 54 65-118 30-92 (154)
256 PF11009 DUF2847: Protein of u 82.5 4.8 0.0001 30.5 5.8 71 66-136 19-105 (105)
257 TIGR03759 conj_TIGR03759 integ 82.5 2.5 5.5E-05 35.6 4.7 57 64-120 107-165 (200)
258 cd03019 DsbA_DsbA DsbA family, 82.1 1.3 2.8E-05 33.9 2.7 39 64-102 14-56 (178)
259 PTZ00256 glutathione peroxidas 81.8 2 4.3E-05 34.3 3.7 34 69-102 45-83 (183)
260 cd03079 GST_N_Metaxin2 GST_N f 80.7 5.5 0.00012 28.1 5.3 57 76-140 16-72 (74)
261 PRK00522 tpx lipid hydroperoxi 80.0 3.5 7.7E-05 32.3 4.6 49 65-113 44-99 (167)
262 cd02974 AhpF_NTD_N Alkyl hydro 79.4 10 0.00022 27.8 6.5 65 66-141 20-92 (94)
263 cd03015 PRX_Typ2cys Peroxiredo 79.3 3.4 7.4E-05 32.3 4.3 38 67-104 31-74 (173)
264 cd02983 P5_C P5 family, C-term 78.7 11 0.00023 28.9 6.8 61 89-149 52-121 (130)
265 PF02114 Phosducin: Phosducin; 78.3 3.9 8.4E-05 35.4 4.7 78 66-144 147-239 (265)
266 PF04134 DUF393: Protein of un 77.4 3.7 8.1E-05 29.8 3.8 68 71-141 1-76 (114)
267 PF13462 Thioredoxin_4: Thiore 77.0 2.8 6.1E-05 31.4 3.1 34 107-141 128-162 (162)
268 PF11287 DUF3088: Protein of u 76.6 3.8 8.1E-05 31.6 3.6 66 76-141 23-105 (112)
269 KOG1390|consensus 75.3 0.58 1.2E-05 42.5 -1.3 19 14-32 353-371 (396)
270 KOG0191|consensus 75.2 7.7 0.00017 34.4 5.8 81 65-145 162-254 (383)
271 PF13848 Thioredoxin_6: Thiore 73.9 24 0.00051 26.8 7.6 73 68-140 98-183 (184)
272 cd02978 KaiB_like KaiB-like fa 72.0 5.6 0.00012 28.3 3.3 52 68-119 3-60 (72)
273 PF02966 DIM1: Mitosis protein 71.5 9.3 0.0002 30.3 4.8 60 66-125 21-87 (133)
274 COG3011 Predicted thiol-disulf 71.0 32 0.0007 27.3 7.8 61 65-125 6-73 (137)
275 KOG2603|consensus 70.8 9.2 0.0002 34.5 5.2 80 67-146 62-169 (331)
276 PRK10606 btuE putative glutath 70.1 11 0.00023 30.8 5.1 72 64-143 24-115 (183)
277 cd02991 UAS_ETEA UAS family, E 70.0 41 0.00089 25.2 8.0 75 69-143 21-113 (116)
278 PF01323 DSBA: DSBA-like thior 68.7 4.8 0.0001 31.1 2.7 28 113-140 166-193 (193)
279 PRK15000 peroxidase; Provision 68.5 38 0.00082 27.6 8.1 92 69-160 39-183 (200)
280 KOG3414|consensus 68.0 12 0.00027 29.8 4.8 74 68-141 26-118 (142)
281 PF01216 Calsequestrin: Calseq 67.1 27 0.00057 32.2 7.4 94 64-157 50-158 (383)
282 PTZ00137 2-Cys peroxiredoxin; 65.1 59 0.0013 28.1 8.9 92 69-160 103-246 (261)
283 TIGR03137 AhpC peroxiredoxin. 64.9 12 0.00025 30.0 4.3 24 66-89 32-56 (187)
284 cd03016 PRX_1cys Peroxiredoxin 64.8 11 0.00023 30.7 4.1 35 69-103 30-69 (203)
285 KOG2501|consensus 64.2 9.4 0.0002 31.0 3.6 36 69-104 37-79 (157)
286 cd03073 PDI_b'_ERp72_ERp57 PDI 62.5 25 0.00054 26.2 5.4 64 79-142 36-110 (111)
287 PRK15317 alkyl hydroperoxide r 62.2 27 0.00059 32.2 6.7 66 66-142 20-93 (517)
288 TIGR02654 circ_KaiB circadian 60.6 15 0.00033 27.1 3.8 53 67-119 4-62 (87)
289 TIGR03140 AhpF alkyl hydropero 59.8 29 0.00062 32.1 6.4 66 66-141 20-93 (515)
290 PF01323 DSBA: DSBA-like thior 58.5 8.3 0.00018 29.8 2.3 24 68-91 1-24 (193)
291 cd03023 DsbA_Com1_like DsbA fa 58.1 12 0.00026 27.4 3.0 33 107-140 121-154 (154)
292 cd03024 DsbA_FrnE DsbA family, 58.1 13 0.00028 29.1 3.4 27 113-139 174-200 (201)
293 PTZ00490 Ferredoxin superfamil 57.8 6.3 0.00014 31.3 1.6 44 3-46 29-80 (143)
294 cd03082 TRX_Fd_NuoE_W_FDH_beta 54.0 22 0.00047 24.6 3.6 27 113-141 45-71 (72)
295 COG1905 NuoE NADH:ubiquinone o 53.3 13 0.00028 30.2 2.7 76 65-144 76-158 (160)
296 cd03081 TRX_Fd_NuoE_FDH_gamma 53.2 24 0.00051 24.6 3.8 27 113-141 53-79 (80)
297 PRK09301 circadian clock prote 53.2 30 0.00064 26.3 4.5 55 66-120 6-66 (103)
298 PF10926 DUF2800: Protein of u 52.8 10 0.00023 34.5 2.3 52 112-166 286-338 (372)
299 cd03078 GST_N_Metaxin1_like GS 52.4 73 0.0016 21.7 7.7 58 75-141 14-71 (73)
300 PF07689 KaiB: KaiB domain; I 50.7 9.4 0.0002 27.6 1.4 40 79-118 10-55 (82)
301 cd03025 DsbA_FrnE_like DsbA fa 50.6 10 0.00022 29.4 1.7 24 68-91 2-25 (193)
302 cd03064 TRX_Fd_NuoE TRX-like [ 50.0 29 0.00063 23.8 3.8 28 113-142 53-80 (80)
303 COG2761 FrnE Predicted dithiol 49.8 10 0.00022 32.4 1.7 28 64-91 3-30 (225)
304 KOG0868|consensus 48.8 43 0.00093 28.4 5.1 58 66-125 5-68 (217)
305 KOG0912|consensus 48.6 11 0.00023 34.4 1.6 87 66-155 14-115 (375)
306 KOG1391|consensus 48.3 4.4 9.6E-05 36.3 -0.8 28 6-33 338-371 (396)
307 PRK13599 putative peroxiredoxi 44.3 39 0.00084 28.0 4.3 76 69-144 33-157 (215)
308 PRK10382 alkyl hydroperoxide r 44.3 43 0.00094 27.2 4.5 92 67-158 33-176 (187)
309 PF07511 DUF1525: Protein of u 43.8 33 0.0007 26.4 3.5 32 113-144 82-113 (114)
310 KOG3460|consensus 43.6 29 0.00064 25.7 3.0 31 95-125 49-81 (91)
311 cd03072 PDI_b'_ERp44 PDIb' fam 42.6 72 0.0016 23.5 5.1 55 90-144 46-109 (111)
312 PRK07571 bidirectional hydroge 42.2 37 0.00081 27.6 3.8 72 66-142 88-167 (169)
313 PF09822 ABC_transp_aux: ABC-t 41.9 1.8E+02 0.0039 24.3 8.0 82 64-145 24-144 (271)
314 COG0602 NrdG Organic radical a 41.9 17 0.00037 30.2 1.8 62 76-141 35-97 (212)
315 PRK13191 putative peroxiredoxi 41.6 40 0.00087 27.9 4.0 35 70-104 39-78 (215)
316 PRK05988 formate dehydrogenase 40.6 57 0.0012 26.0 4.5 28 113-142 127-154 (156)
317 PRK10954 periplasmic protein d 40.1 57 0.0012 26.3 4.6 36 66-101 38-80 (207)
318 cd03022 DsbA_HCCA_Iso DsbA fam 38.5 14 0.00029 28.6 0.7 23 69-91 1-23 (192)
319 cd03013 PRX5_like Peroxiredoxi 38.4 74 0.0016 24.6 4.8 54 66-119 31-96 (155)
320 PF10865 DUF2703: Domain of un 38.3 79 0.0017 24.5 4.8 49 75-125 13-72 (120)
321 COG1331 Highly conserved prote 38.2 33 0.00071 33.8 3.3 59 67-125 45-122 (667)
322 PF13848 Thioredoxin_6: Thiore 37.7 1.8E+02 0.0038 21.9 7.5 59 90-151 19-83 (184)
323 PRK13189 peroxiredoxin; Provis 37.3 61 0.0013 26.9 4.4 88 69-156 40-180 (222)
324 cd03021 DsbA_GSTK DsbA family, 36.6 25 0.00054 28.4 1.9 25 67-91 1-25 (209)
325 cd03083 TRX_Fd_NuoE_hoxF TRX-l 34.3 68 0.0015 22.3 3.7 27 113-141 53-79 (80)
326 COG1651 DsbG Protein-disulfide 34.2 35 0.00076 27.8 2.5 29 113-142 214-242 (244)
327 KOG4244|consensus 33.4 77 0.0017 28.1 4.5 64 68-140 45-115 (281)
328 PF12419 DUF3670: SNF2 Helicas 32.9 65 0.0014 24.9 3.7 38 105-145 87-124 (141)
329 cd03024 DsbA_FrnE DsbA family, 32.7 36 0.00077 26.6 2.2 21 69-89 1-21 (201)
330 TIGR01101 V_ATP_synt_F vacuola 32.3 1E+02 0.0022 23.6 4.6 63 81-144 46-114 (115)
331 TIGR01958 nuoE_fam NADH-quinon 31.9 70 0.0015 24.9 3.7 72 68-142 70-147 (148)
332 COG1651 DsbG Protein-disulfide 31.5 1.1E+02 0.0024 24.8 5.0 41 64-104 83-128 (244)
333 PF13743 Thioredoxin_5: Thiore 31.1 29 0.00062 27.7 1.4 21 71-91 2-22 (176)
334 PF06053 DUF929: Domain of unk 30.1 51 0.0011 28.6 2.9 29 60-88 53-81 (249)
335 COG4540 gpV Phage P2 baseplate 30.1 61 0.0013 27.0 3.2 44 33-76 52-96 (184)
336 PF01257 2Fe-2S_thioredx: Thio 29.6 39 0.00084 26.3 1.9 27 114-142 118-144 (145)
337 cd02980 TRX_Fd_family Thioredo 29.4 67 0.0015 21.3 2.9 29 113-141 48-76 (77)
338 PRK06366 acetyl-CoA acetyltran 28.5 15 0.00033 32.8 -0.6 19 14-32 344-362 (388)
339 TIGR01626 ytfJ_HI0045 conserve 27.7 2.4E+02 0.0052 23.1 6.3 58 83-140 113-177 (184)
340 TIGR02260 benz_CoA_red_B benzo 27.3 1.1E+02 0.0023 28.1 4.6 31 113-143 380-410 (413)
341 PRK07108 acetyl-CoA acetyltran 27.2 15 0.00032 33.2 -1.0 19 14-32 349-367 (392)
342 PRK12373 NADH dehydrogenase su 26.8 1E+02 0.0023 28.6 4.4 32 113-146 142-173 (400)
343 PRK10954 periplasmic protein d 26.7 85 0.0018 25.4 3.5 18 109-126 161-179 (207)
344 PLN02331 phosphoribosylglycina 26.7 2E+02 0.0044 23.8 5.8 39 37-79 2-41 (207)
345 PF00837 T4_deiodinase: Iodoth 26.5 4.1E+02 0.0088 23.0 7.7 59 80-142 170-236 (237)
346 PRK07539 NADH dehydrogenase su 26.0 1E+02 0.0022 24.2 3.8 28 113-142 126-153 (154)
347 TIGR02742 TrbC_Ftype type-F co 25.7 1.3E+02 0.0029 23.4 4.3 42 99-140 55-112 (130)
348 TIGR02826 RNR_activ_nrdG3 anae 25.2 52 0.0011 25.8 1.9 65 66-141 15-83 (147)
349 TIGR03757 conj_TIGR03757 integ 25.1 1.1E+02 0.0024 23.5 3.7 30 113-142 83-112 (113)
350 PRK05647 purN phosphoribosylgl 25.0 2.1E+02 0.0046 23.4 5.6 52 37-100 4-58 (200)
351 KOG4420|consensus 24.9 1.1E+02 0.0024 27.5 4.0 74 68-147 26-107 (325)
352 TIGR00311 aIF-2beta translatio 23.7 1.4E+02 0.0031 23.3 4.1 45 103-147 51-98 (133)
353 PF13562 NTP_transf_4: Sugar n 23.6 79 0.0017 25.1 2.7 45 103-152 49-97 (156)
354 PF11116 DUF2624: Protein of u 23.6 17 0.00038 26.7 -1.0 38 129-166 30-67 (85)
355 PTZ00253 tryparedoxin peroxida 23.1 99 0.0021 24.8 3.2 36 69-104 41-81 (199)
356 PF07894 DUF1669: Protein of u 22.5 3.2E+02 0.0069 24.3 6.5 60 64-123 116-184 (284)
357 COG2761 FrnE Predicted dithiol 21.9 1E+02 0.0022 26.4 3.2 31 113-143 183-213 (225)
358 PF07449 HyaE: Hydrogenase-1 e 21.6 1.4E+02 0.003 22.6 3.6 59 67-125 28-95 (107)
359 COG0400 Predicted esterase [Ge 21.6 1.1E+02 0.0023 25.5 3.2 79 12-100 101-185 (207)
360 PLN02593 adrenodoxin-like ferr 21.5 48 0.001 25.1 1.0 37 10-46 1-44 (117)
361 smart00653 eIF2B_5 domain pres 21.5 1.8E+02 0.0039 22.0 4.2 45 104-148 34-82 (110)
362 PF14237 DUF4339: Domain of un 21.5 1.3E+02 0.0029 18.6 2.9 20 120-141 6-25 (45)
363 PF11301 DUF3103: Protein of u 21.4 44 0.00096 30.5 0.9 45 96-140 104-149 (350)
364 TIGR00639 PurN phosphoribosylg 21.2 3.2E+02 0.007 22.2 5.9 38 37-78 3-41 (190)
365 PRK01655 spxA transcriptional 20.9 1.5E+02 0.0033 22.5 3.8 25 114-140 91-115 (131)
366 PF04566 RNA_pol_Rpb2_4: RNA p 20.7 1.9E+02 0.0042 19.6 3.9 24 118-142 1-24 (63)
367 PF05673 DUF815: Protein of un 20.4 2.5E+02 0.0055 24.4 5.3 79 61-140 47-132 (249)
368 PRK06205 acetyl-CoA acetyltran 20.3 22 0.00048 32.0 -1.2 18 15-32 361-378 (404)
369 PF01873 eIF-5_eIF-2B: Domain 20.1 1.4E+02 0.003 23.1 3.3 45 103-147 46-94 (125)
No 1
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=99.84 E-value=9.4e-21 Score=134.65 Aligned_cols=73 Identities=34% Similarity=0.503 Sum_probs=65.7
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCC--cccEEEEEcCCcHHHHHhcCCcccEEEeCC------EEEEecCCCHHHHHHHH
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLD--RVHLEEVYLTPESYWYKLYRYEIPVLFLGG------RFVCRNRFNAQILMSNE 139 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~--e~~~eeIDId~d~el~~~y~~~VPVl~idG------e~i~~~r~d~e~L~~~L 139 (170)
+|++|||++||+|+.|++.|+++.. +++++.|||++|++|.++|+++|||++++| ...++|+||+++|+++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~~~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~L 80 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYGYRIPVLHIDGIRQFKEQEELKWRFDEEQLRAWL 80 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSCTSTSEEEETT-GGGCTSEEEESSB-HHHHHHHH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhcCCCCEEEEcCcccccccceeCCCCCHHHHHHHh
Confidence 5899999999999999999997653 388999999999999999999999999999 88999999999999998
Q ss_pred H
Q psy17234 140 C 140 (170)
Q Consensus 140 ~ 140 (170)
+
T Consensus 81 ~ 81 (81)
T PF05768_consen 81 E 81 (81)
T ss_dssp H
T ss_pred C
Confidence 5
No 2
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.62 E-value=4e-15 Score=106.33 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=60.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHh----cCCcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKL----YRYEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~----y~~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
++|++||+++||+|++++++|++.+ ++|+++||++++++.+. +...||||+++|+.+. +|++++|.+++.+
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~g--I~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~--Gf~~~~l~~~~~~ 75 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESRG--FDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWS--GFRPDMINRLHPA 75 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHCC--CceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEe--cCCHHHHHHHHHh
Confidence 4799999999999999999999854 89999999999764432 2358999999998875 8999999998864
No 3
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.57 E-value=5.9e-15 Score=108.91 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=60.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHH---HHHhc----C-CcccEEEeCCEEEEecCCCH-----
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESY---WYKLY----R-YEIPVLFLGGRFVCRNRFNA----- 132 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~e---l~~~y----~-~~VPVl~idGe~i~~~r~d~----- 132 (170)
..+|++||++|||+|.+||++|++++ ++|+++||+++++ +.+.+ + .+||+||+||+++ +++|+
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~--i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~i--GG~ddl~~l~ 82 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLG--VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLV--GGLENVMALH 82 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcC--CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEE--cCHHHHHHHH
Confidence 45699999999999999999999976 7788899987733 33332 3 5899999999987 67776
Q ss_pred --HHHHHHHHhcccc
Q psy17234 133 --QILMSNECIFQCQ 145 (170)
Q Consensus 133 --e~L~~~L~~~~~~ 145 (170)
.+|.+.|.+.++.
T Consensus 83 ~~G~L~~~l~~~~~~ 97 (99)
T TIGR02189 83 ISGSLVPMLKQAGAL 97 (99)
T ss_pred HcCCHHHHHHHhCcc
Confidence 6788888766543
No 4
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.54 E-value=4.8e-14 Score=99.85 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=57.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCC---cccEEEEEcCCc----HHHHHhcC---CcccEEEeCCEEEEecCCCHHHHH
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLD---RVHLEEVYLTPE----SYWYKLYR---YEIPVLFLGGRFVCRNRFNAQILM 136 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~---e~~~eeIDId~d----~el~~~y~---~~VPVl~idGe~i~~~r~d~e~L~ 136 (170)
|+|++|+++|||+|++|+++|+++.. ++.|+++||+++ +++.+.++ ++||+||+||+.+. .-++|.
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~ig----g~~~~~ 76 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIG----GCTDFE 76 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEc----CHHHHH
Confidence 57999999999999999999999652 489999999987 35666666 58999999999973 335666
Q ss_pred HHHH
Q psy17234 137 SNEC 140 (170)
Q Consensus 137 ~~L~ 140 (170)
++++
T Consensus 77 ~~~~ 80 (85)
T PRK11200 77 AYVK 80 (85)
T ss_pred HHHH
Confidence 6654
No 5
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.54 E-value=2.5e-14 Score=98.58 Aligned_cols=67 Identities=18% Similarity=0.342 Sum_probs=55.9
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhc---C-CcccEEEeCCEEEEecCCCHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLY---R-YEIPVLFLGGRFVCRNRFNAQILMSN 138 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y---~-~~VPVl~idGe~i~~~r~d~e~L~~~ 138 (170)
|+||++++||+|.+|+++|++.+ +.|+++||+++++.++.+ + .+||+|++||... .++|++++|.++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~--i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~~~-~~G~~~~~~~~~ 71 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHG--IAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGDLS-WSGFRPDKLKAL 71 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCC--CceEEEECCCCHHHHHHHHHcCCcccCEEEECCCcE-EeccCHHHHHhc
Confidence 58999999999999999999864 899999999997655544 5 4899999988643 358999999874
No 6
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.53 E-value=6.4e-14 Score=98.46 Aligned_cols=70 Identities=23% Similarity=0.396 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc---HHHHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE---SYWYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d---~el~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
...++|+||+++|||+|.+|+++|++.+ ++|+++||+++ .++.+.++ .+||+||+||+.+. ++ ++|.+.|
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~g--i~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~ig--G~--~~l~~~l 78 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKG--YDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIG--GS--DELEAYL 78 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcC--CCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEc--CH--HHHHHHh
Confidence 3456799999999999999999999864 89999999988 34555555 68999999999863 33 5666554
No 7
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.51 E-value=1.2e-13 Score=98.85 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=56.1
Q ss_pred EEEEcCCCCchHHHHHHHHhccCC---cccEEEEEcCCc----HHHHHhcC---CcccEEEeCCEEEEecCCCHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLD---RVHLEEVYLTPE----SYWYKLYR---YEIPVLFLGGRFVCRNRFNAQILMSN 138 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~---e~~~eeIDId~d----~el~~~y~---~~VPVl~idGe~i~~~r~d~e~L~~~ 138 (170)
|+|||++|||+|.+|+++|+++.. .+.|+++||+.+ .++.+.++ .+||+||+||+++ + .-++|.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~i--g--G~~dl~~~ 77 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHV--G--GCTDFEQL 77 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEe--c--CHHHHHHH
Confidence 799999999999999999999754 378999999975 35777777 5899999999986 2 33667666
Q ss_pred HHh
Q psy17234 139 ECI 141 (170)
Q Consensus 139 L~~ 141 (170)
++.
T Consensus 78 ~~~ 80 (86)
T TIGR02183 78 VKE 80 (86)
T ss_pred HHh
Confidence 653
No 8
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.1e-13 Score=98.79 Aligned_cols=70 Identities=24% Similarity=0.391 Sum_probs=56.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcH--H---HHHhc--CCcccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPES--Y---WYKLY--RYEIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~--e---l~~~y--~~~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
+.|++||+++||||.+||++|++.. ++|+++|++.++ + ..++. ..+||+||+||+++ .|.++.+++.+..
T Consensus 1 ~~v~iyt~~~CPyC~~ak~~L~~~g--~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~i-gg~~d~~~~~~~~ 77 (80)
T COG0695 1 ANVTIYTKPGCPYCKRAKRLLDRKG--VDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHV-GGCDDLDALEAKG 77 (80)
T ss_pred CCEEEEECCCCchHHHHHHHHHHcC--CCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEE-eCcccHHHHHhhc
Confidence 3589999999999999999999854 899999999985 3 23333 36899999999975 4668888887653
No 9
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.50 E-value=1.3e-13 Score=94.45 Aligned_cols=66 Identities=24% Similarity=0.407 Sum_probs=53.6
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHH---HHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESY---WYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~e---l~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
+|+|||+++||+|.+|+++|++.+ ++|+++||+++++ +.+.++ .+||+||+||+.+. ..++|.+.|
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~--i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~ig----g~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENG--ISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIG----GSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcC--CCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEe----CHHHHHHHh
Confidence 589999999999999999999864 8899999998853 333344 58999999999862 466777665
No 10
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.44 E-value=3.3e-13 Score=90.65 Aligned_cols=62 Identities=15% Similarity=0.311 Sum_probs=55.0
Q ss_pred eEEEEcCCCCchHHHHHHHHhccC---CcccEEEEEcCCcHHHHHhcCC-cccEEEeCCEEEEecC
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYL---DRVHLEEVYLTPESYWYKLYRY-EIPVLFLGGRFVCRNR 129 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~---~e~~~eeIDId~d~el~~~y~~-~VPVl~idGe~i~~~r 129 (170)
+|++|+++|||+|.++++.|+++. ..++|..+|+++++++.++|+. .+|.+++||+.+..|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i~~~~~~~g~ 67 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVINGKVEFVGR 67 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEECCEEEEecC
Confidence 589999999999999999999763 2389999999999999999986 7999999999887664
No 11
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.42 E-value=7.6e-13 Score=90.30 Aligned_cols=56 Identities=23% Similarity=0.415 Sum_probs=47.5
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHH----HhcC-C-cccEEEeCCEEE
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWY----KLYR-Y-EIPVLFLGGRFV 125 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~----~~y~-~-~VPVl~idGe~i 125 (170)
+|+||++++||+|.+|+++|++.+ ++|+++||+.+++.. +.++ . +||+||+||+.+
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~--i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~i 62 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKG--VDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHI 62 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC--CcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEE
Confidence 489999999999999999999965 899999999985433 3344 3 799999999987
No 12
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.41 E-value=5.6e-13 Score=92.52 Aligned_cols=55 Identities=24% Similarity=0.446 Sum_probs=47.9
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhc----C-CcccEEEeCCEEE
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLY----R-YEIPVLFLGGRFV 125 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y----~-~~VPVl~idGe~i 125 (170)
|++|++++||+|.+|+++|++.+ ++|+++||+.++++.+.+ + ..||+||+||+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~--i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG--VTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC--CCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEE
Confidence 68999999999999999999865 899999999997665443 3 5799999999987
No 13
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.40 E-value=1e-12 Score=87.33 Aligned_cols=55 Identities=27% Similarity=0.508 Sum_probs=47.2
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHH----HHHhcC-CcccEEEeCCEEE
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESY----WYKLYR-YEIPVLFLGGRFV 125 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~e----l~~~y~-~~VPVl~idGe~i 125 (170)
|++||+++||+|..++++|++.+ ++|+++||+++++ +.+.++ .++|+||+||+++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~--i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKG--IPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTT--BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcC--CeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 78999999999999999999865 8999999999954 334445 5899999999975
No 14
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.40 E-value=1.7e-12 Score=89.20 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=64.9
Q ss_pred eEEEEcCCCCchHHHHHHHHhccC----CcccEEEEEcCCcHHHHHhcCC-cccEEEeCCEEEEecCCCHHHHHHHHHhc
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYL----DRVHLEEVYLTPESYWYKLYRY-EIPVLFLGGRFVCRNRFNAQILMSNECIF 142 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~----~e~~~eeIDId~d~el~~~y~~-~VPVl~idGe~i~~~r~d~e~L~~~L~~~ 142 (170)
.|++|+++|||+|..++..|+++. ..+.+..||+++++++.++|+. .+|++++||+....|..++++|+++|...
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~~g~~~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVINGDVEFIGAPTKEELVEAIKKR 81 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEECCEEEEecCCCHHHHHHHHHhh
Confidence 589999999999999999998643 3378899999999999999985 69999999987777888999999988753
No 15
>PHA03050 glutaredoxin; Provisional
Probab=99.38 E-value=1.2e-12 Score=98.52 Aligned_cols=60 Identities=20% Similarity=0.374 Sum_probs=48.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCcc-cEEEEEcCC---cHH----HHHhcC-CcccEEEeCCEEE
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDRV-HLEEVYLTP---ESY----WYKLYR-YEIPVLFLGGRFV 125 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e~-~~eeIDId~---d~e----l~~~y~-~~VPVl~idGe~i 125 (170)
..+|++|+++|||||.+|+++|++++.+. .|+++||++ +.+ +.+..+ ++||+||+||+++
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~i 80 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSI 80 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEE
Confidence 45699999999999999999999976321 799999987 333 334444 5899999999997
No 16
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.38 E-value=3.5e-12 Score=84.67 Aligned_cols=68 Identities=24% Similarity=0.399 Sum_probs=57.0
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHH----HHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESY----WYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~e----l~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
|++|+.+|||+|..++.+|++. +++|+.+|++++++ +.+.++ ..||+++++|+.+ .++++++|+++|.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~--~g~~~~~i~~~i~ 74 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKII--VGFDPEKLDQLLE 74 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEE--eeCCHHHHHHHhC
Confidence 8999999999999999999985 48999999999854 445566 4799999999874 3589999998873
No 17
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.37 E-value=2.8e-12 Score=88.28 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=48.5
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHH----HHHhcC-CcccEEEeCCEEE
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESY----WYKLYR-YEIPVLFLGGRFV 125 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~e----l~~~y~-~~VPVl~idGe~i 125 (170)
+|+||++++||+|.+|+++|++.+ ++|+.+||+++++ +.+..+ ..+|++|+||+++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~g--i~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~i 62 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKG--LPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLV 62 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCC--CceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEE
Confidence 699999999999999999999964 8999999999854 445544 5799999999987
No 18
>PRK10638 glutaredoxin 3; Provisional
Probab=99.35 E-value=3e-12 Score=90.38 Aligned_cols=56 Identities=21% Similarity=0.446 Sum_probs=47.6
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHH----HhcC-CcccEEEeCCEEE
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWY----KLYR-YEIPVLFLGGRFV 125 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~----~~y~-~~VPVl~idGe~i 125 (170)
+|++|++++||+|.+|+.+|++.+ ++|+++||+++++.. +..+ .+||+|++||+.+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~g--i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~i 63 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKG--VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHI 63 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcC--CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEE
Confidence 699999999999999999999964 899999999885433 3334 4799999999987
No 19
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.28 E-value=1.9e-11 Score=81.07 Aligned_cols=68 Identities=22% Similarity=0.359 Sum_probs=55.9
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhc----C-CcccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLY----R-YEIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y----~-~~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
.+++|+.+|||+|.+++.+|++.. ++|..+|++.+++..+.+ + ..||+++++|+.+ +++++++|+++|
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~--i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i--~g~~~~~l~~~~ 73 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERG--IPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHL--SGFRPDKLRALL 73 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCC--CCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEE--ecCCHHHHHhhC
Confidence 379999999999999999999854 889999999885544333 3 5799999999765 579999998875
No 20
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.27 E-value=1.5e-11 Score=90.43 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=48.6
Q ss_pred CCeEEEEcC-----CCCchHHHHHHHHhccCCcccEEEEEcCCcHHHH----HhcC-CcccEEEeCCEEE
Q psy17234 66 KPMLNLFTK-----DPCPLCDELKLELTPYLDRVHLEEVYLTPESYWY----KLYR-YEIPVLFLGGRFV 125 (170)
Q Consensus 66 ~~~VtLYTk-----~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~----~~y~-~~VPVl~idGe~i 125 (170)
..+|++|++ |+||+|.+|+++|++++ ++|+++||+++++.+ +..+ .+||+||+||+++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~--i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~i 78 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACG--VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFV 78 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcC--CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEE
Confidence 457999988 89999999999999975 789999999886543 3334 4899999999987
No 21
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.25 E-value=4.6e-11 Score=82.39 Aligned_cols=68 Identities=21% Similarity=0.386 Sum_probs=48.7
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCc--ccEEEEEcCCcH-----HHHHhcCC-cccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDR--VHLEEVYLTPES-----YWYKLYRY-EIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e--~~~eeIDId~d~-----el~~~y~~-~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
|++|+++|||+|.+++++|+++..+ +++.++|.+++. ++.+.++. ++|++|+||+.+. + .+++.+..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~ig--g--~~~~~~~~~ 76 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIG--G--CSDLLALYK 76 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEc--C--HHHHHHHHH
Confidence 6899999999999999999998744 445555554442 24555664 7999999999863 3 355555543
No 22
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.25 E-value=2.2e-11 Score=87.88 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=48.8
Q ss_pred CCeEEEEcC-----CCCchHHHHHHHHhccCCcccEEEEEcCCcHHHH----HhcC-CcccEEEeCCEEE
Q psy17234 66 KPMLNLFTK-----DPCPLCDELKLELTPYLDRVHLEEVYLTPESYWY----KLYR-YEIPVLFLGGRFV 125 (170)
Q Consensus 66 ~~~VtLYTk-----~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~----~~y~-~~VPVl~idGe~i 125 (170)
..+|++|++ |+||+|.+|+++|++.+ +.|+++||+++++++ +..+ .++|+||+||+++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~--i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~i 74 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG--VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELV 74 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC--CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEE
Confidence 457999998 69999999999999975 799999999996543 3344 5799999999987
No 23
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.23 E-value=7.8e-11 Score=81.22 Aligned_cols=58 Identities=26% Similarity=0.458 Sum_probs=45.4
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc-HH----HHHhcCC-cccEEEeCCEEE
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE-SY----WYKLYRY-EIPVLFLGGRFV 125 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d-~e----l~~~y~~-~VPVl~idGe~i 125 (170)
+|++|+++|||+|+.++++|+++..++++.++|.+++ .+ +.+.++. ++|++|+||+.+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~i 64 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFI 64 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEE
Confidence 4899999999999999999999876556666666655 22 3344554 799999999986
No 24
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.23 E-value=3.7e-11 Score=79.08 Aligned_cols=57 Identities=25% Similarity=0.521 Sum_probs=48.2
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHH----HhcC-CcccEEEeCCEEEE
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWY----KLYR-YEIPVLFLGGRFVC 126 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~----~~y~-~~VPVl~idGe~i~ 126 (170)
+|++|++++||+|..++.+|++.+ ++|+++||++++++. +..+ .++|++++||+.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~--i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~ig 62 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLG--IEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIG 62 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC--CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEe
Confidence 489999999999999999999976 899999999986433 3344 47999999999874
No 25
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.23 E-value=7.4e-11 Score=79.91 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=55.3
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhc-----C-CcccEEEe-CCEEEEecCCCHHHHHHHHH
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLY-----R-YEIPVLFL-GGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y-----~-~~VPVl~i-dGe~i~~~r~d~e~L~~~L~ 140 (170)
+|++|+.+|||+|.+++.+|+++. ++|+.+|++++++..+.+ + .+||++++ ||..+ +..+.++|.+.|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~--~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l--~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLG--AAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFL--TNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcC--CceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEe--cCCCHHHHHHHhh
Confidence 489999999999999999999975 788999999886554442 4 57999876 56554 4888888888774
No 26
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.21 E-value=6e-11 Score=83.12 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=54.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCCc--ccEEEEEcCCcHHHHHhcC-CcccEEEeCCEEEEecC-CCHHHHHHHHH
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLDR--VHLEEVYLTPESYWYKLYR-YEIPVLFLGGRFVCRNR-FNAQILMSNEC 140 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~e--~~~eeIDId~d~el~~~y~-~~VPVl~idGe~i~~~r-~d~e~L~~~L~ 140 (170)
|.|.+|+ +|||+|+.+++.++++..+ ..++.++|++.++ ..+|+ ..+|++++||+.+..|. .+.++|.++|+
T Consensus 1 m~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~-a~~~~v~~vPti~i~G~~~~~G~~~~~~~l~~~l~ 76 (76)
T TIGR00412 1 MKIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE-ILEAGVTATPGVAVDGELVIMGKIPSKEEIKEILK 76 (76)
T ss_pred CEEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH-HHHcCCCcCCEEEECCEEEEEeccCCHHHHHHHhC
Confidence 4688898 9999999997776665433 5677788885555 45566 57999999999887775 56688888763
No 27
>PRK10824 glutaredoxin-4; Provisional
Probab=99.18 E-value=6.2e-11 Score=90.71 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=48.2
Q ss_pred CCeEEEEcC-----CCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHh----c-CCcccEEEeCCEEE
Q psy17234 66 KPMLNLFTK-----DPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKL----Y-RYEIPVLFLGGRFV 125 (170)
Q Consensus 66 ~~~VtLYTk-----~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~----y-~~~VPVl~idGe~i 125 (170)
..+|++|++ |+||+|.+|+++|+.++ +.|..+||++++++++. . +.+||.||+||+++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~I 81 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACG--ERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELV 81 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcC--CCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEE
Confidence 456999999 59999999999999975 68888999988654333 2 35899999999998
No 28
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.17 E-value=1.1e-10 Score=84.76 Aligned_cols=73 Identities=12% Similarity=0.163 Sum_probs=63.1
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC---cccEEEEEcCCcHHHHHhcCC-cccEEEeCCEEEEecCCCHHHHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD---RVHLEEVYLTPESYWYKLYRY-EIPVLFLGGRFVCRNRFNAQILM 136 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~---e~~~eeIDId~d~el~~~y~~-~VPVl~idGe~i~~~r~d~e~L~ 136 (170)
+.+..|.+|+.+|||+|..+++.++++.. .++++.+|+++.++++++|+. .||.+++||+.+..|+.+.+++.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vidG~~~~~G~~~~~e~~ 87 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFLNGELFGFGRMTLEEIL 87 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEECCEEEEeCCCCHHHHh
Confidence 44567999999999999999999987643 489999999999999999996 79999999999888888777654
No 29
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.14 E-value=9.7e-11 Score=105.50 Aligned_cols=64 Identities=19% Similarity=0.439 Sum_probs=51.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHH---HHHh----------cCCcccEEEeCCEEEEecCCCHH
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESY---WYKL----------YRYEIPVLFLGGRFVCRNRFNAQ 133 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~e---l~~~----------y~~~VPVl~idGe~i~~~r~d~e 133 (170)
.+|++||+++||+|.+||++|++.+ +.|+++||+++++ +.++ ..++||+||+||+++ +++|+-
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~g--i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~i--gGf~~l 77 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGAND--IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHI--GGYDNL 77 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCC--CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEE--eCchHH
Confidence 4699999999999999999999965 8999999998863 3222 135899999999987 567654
Q ss_pred H
Q psy17234 134 I 134 (170)
Q Consensus 134 ~ 134 (170)
.
T Consensus 78 ~ 78 (410)
T PRK12759 78 M 78 (410)
T ss_pred H
Confidence 3
No 30
>KOG1752|consensus
Probab=99.10 E-value=1.5e-10 Score=87.32 Aligned_cols=60 Identities=25% Similarity=0.451 Sum_probs=47.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc-HHHHHh----c-CCcccEEEeCCEEE
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE-SYWYKL----Y-RYEIPVLFLGGRFV 125 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d-~el~~~----y-~~~VPVl~idGe~i 125 (170)
...|++|+|++||+|.++|++|..+.....+.++|-+++ .++.+. . ..+||.||++|+++
T Consensus 13 ~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~i 78 (104)
T KOG1752|consen 13 ENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFI 78 (104)
T ss_pred cCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEE
Confidence 456999999999999999999999765566777777766 343333 2 35899999999998
No 31
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.06 E-value=2.7e-10 Score=90.42 Aligned_cols=56 Identities=21% Similarity=0.453 Sum_probs=48.0
Q ss_pred eEEEEcCC------CCchHHHHHHHHhccCCcccEEEEEcCCcH----HHHHhcC-----CcccEEEeCCEEE
Q psy17234 68 MLNLFTKD------PCPLCDELKLELTPYLDRVHLEEVYLTPES----YWYKLYR-----YEIPVLFLGGRFV 125 (170)
Q Consensus 68 ~VtLYTk~------~CplCd~Ak~~L~~l~~e~~~eeIDId~d~----el~~~y~-----~~VPVl~idGe~i 125 (170)
+|+|||++ +||+|.+|+++|+.+. +.|+++||+.++ ++.+..+ .++|+||+||+++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~--V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~I 71 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFR--VKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYL 71 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCC--CcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEE
Confidence 48999999 9999999999999975 899999999884 4444433 4799999999997
No 32
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.00 E-value=1.2e-09 Score=76.37 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=56.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCC--cccEEEEEcCCcHHHHHhcC-CcccEEEeCCEEEEec-CCCHHHHHHHHH
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLD--RVHLEEVYLTPESYWYKLYR-YEIPVLFLGGRFVCRN-RFNAQILMSNEC 140 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~--e~~~eeIDId~d~el~~~y~-~~VPVl~idGe~i~~~-r~d~e~L~~~L~ 140 (170)
++|.+| .++||.|..+.+.++++.. ++.++.+|+++.+++ ++|+ ..+|.+++||+..+.| .++.++|+++|+
T Consensus 1 m~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~~~~-~~ygv~~vPalvIng~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 1 MKIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIEDFEEI-EKYGVMSVPALVINGKVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETTTHHHH-HHTT-SSSSEEEETTEEEEESS--HHHHHHHHHH
T ss_pred CEEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEccCHHHH-HHcCCCCCCEEEECCEEEEEecCCCHHHHHHHhC
Confidence 467885 5669999999888876422 378999999555777 8998 5799999999999888 899999999884
No 33
>KOG0910|consensus
Probab=98.96 E-value=2.7e-09 Score=85.37 Aligned_cols=81 Identities=21% Similarity=0.216 Sum_probs=69.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC----cccEEEEEcCCcHHHHHhcCC-cccE--EEeCCEEE--EecCCCHHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD----RVHLEEVYLTPESYWYKLYRY-EIPV--LFLGGRFV--CRNRFNAQI 134 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~----e~~~eeIDId~d~el~~~y~~-~VPV--l~idGe~i--~~~r~d~e~ 134 (170)
...|-++-|+.+||+.|+.....|+++.. .|.+..+|+|+++++.++|+. .||+ +|.||+.. ..+..+++.
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~d~~vG~~~~~~ 139 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKVDRFVGAVPKEQ 139 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEeeeecccCCHHH
Confidence 34577999999999999999999997643 389999999999999999995 5994 46699876 778899999
Q ss_pred HHHHHHhccc
Q psy17234 135 LMSNECIFQC 144 (170)
Q Consensus 135 L~~~L~~~~~ 144 (170)
|+++|+++-.
T Consensus 140 l~~~i~k~l~ 149 (150)
T KOG0910|consen 140 LRSLIKKFLK 149 (150)
T ss_pred HHHHHHHHhc
Confidence 9999998753
No 34
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.95 E-value=4e-09 Score=78.81 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=60.2
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCC---cccEEEEEcCCcHHHHHhcCC-cccEEEe--C----CEEEEecCCCHHHHHH
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLD---RVHLEEVYLTPESYWYKLYRY-EIPVLFL--G----GRFVCRNRFNAQILMS 137 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~---e~~~eeIDId~d~el~~~y~~-~VPVl~i--d----Ge~i~~~r~d~e~L~~ 137 (170)
-++.|+++||++|..+++.|+++.. .+.+..+|+++++++.++|+. .+|.+++ + |...+.+..+..+|.+
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~ 104 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFAS 104 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHH
Confidence 3555689999999999999987653 378999999999999999994 7996554 3 3334667888999999
Q ss_pred HHHhc
Q psy17234 138 NECIF 142 (170)
Q Consensus 138 ~L~~~ 142 (170)
+|.+.
T Consensus 105 ~i~~i 109 (113)
T cd02975 105 LIEDI 109 (113)
T ss_pred HHHHH
Confidence 98865
No 35
>PHA02125 thioredoxin-like protein
Probab=98.94 E-value=5.3e-09 Score=72.69 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=54.0
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhcC-CcccEEEeCCEEE-EecCCC--HHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYR-YEIPVLFLGGRFV-CRNRFN--AQILMSNEC 140 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y~-~~VPVl~idGe~i-~~~r~d--~e~L~~~L~ 140 (170)
|++|+.+||+.|..+++.|+++. +.+..+|+++++++.++|+ ..+|.++ +|+.+ ...+++ ..+|++.|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--~~~~~vd~~~~~~l~~~~~v~~~PT~~-~g~~~~~~~G~~~~~~~l~~~~~ 74 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--YTYVDVDTDEGVELTAKHHIRSLPTLV-NTSTLDRFTGVPRNVAELKEKLG 74 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--heEEeeeCCCCHHHHHHcCCceeCeEE-CCEEEEEEeCCCCcHHHHHHHhC
Confidence 89999999999999999998753 6777788888899999998 5799877 77644 222444 478887764
No 36
>PTZ00062 glutaredoxin; Provisional
Probab=98.90 E-value=4.6e-09 Score=87.34 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=50.2
Q ss_pred CCeEEEEcC-----CCCchHHHHHHHHhccCCcccEEEEEcCCcHHHH----HhcC-CcccEEEeCCEEEEecCCC
Q psy17234 66 KPMLNLFTK-----DPCPLCDELKLELTPYLDRVHLEEVYLTPESYWY----KLYR-YEIPVLFLGGRFVCRNRFN 131 (170)
Q Consensus 66 ~~~VtLYTk-----~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~----~~y~-~~VPVl~idGe~i~~~r~d 131 (170)
..+|+||+| |+||+|.+++++|++.+ +.|+++||++|++.+ +..+ .+||+||+||+++ +++|
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~--i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~I--GG~d 183 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSG--VKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELI--GGHD 183 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcC--CCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEE--cChH
Confidence 456999988 79999999999999965 789999999986543 3233 5799999999997 4443
No 37
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.84 E-value=1.1e-08 Score=83.98 Aligned_cols=78 Identities=10% Similarity=0.190 Sum_probs=63.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC---cccEEEEEcCCcHHHHHhcCC-cccEEEeCCEEE-EecCCCHHHHHHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD---RVHLEEVYLTPESYWYKLYRY-EIPVLFLGGRFV-CRNRFNAQILMSN 138 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~---e~~~eeIDId~d~el~~~y~~-~VPVl~idGe~i-~~~r~d~e~L~~~ 138 (170)
+.+..|++|+.+|||+|+.++..++++.. .+.+..+|+++++++.++|+. .+|.++++++.. ..|..+.++|.++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~~~G~~~~~~l~~~ 211 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEEFVGAYPEEQFLEY 211 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEEEECCCCHHHHHHH
Confidence 44557888999999999999999987642 378889999999999999995 799777654322 6678899999988
Q ss_pred HHh
Q psy17234 139 ECI 141 (170)
Q Consensus 139 L~~ 141 (170)
|.+
T Consensus 212 l~~ 214 (215)
T TIGR02187 212 ILS 214 (215)
T ss_pred HHh
Confidence 864
No 38
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.83 E-value=1.7e-08 Score=72.35 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccC----CcccEEEEEcCCcHHHHHhcCC-cccEE--EeCCEEE--EecCCCHHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYL----DRVHLEEVYLTPESYWYKLYRY-EIPVL--FLGGRFV--CRNRFNAQI 134 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~----~e~~~eeIDId~d~el~~~y~~-~VPVl--~idGe~i--~~~r~d~e~ 134 (170)
...+.+.+|+.+||+.|..+...|+++. ..+.+..+|+++++++.++++. .+|.+ +.||+.+ ..+..+++.
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~~ 91 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKSE 91 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHHH
Confidence 4456789999999999999999988643 3478999999999999999984 79944 4488766 556788888
Q ss_pred HHHHHH
Q psy17234 135 LMSNEC 140 (170)
Q Consensus 135 L~~~L~ 140 (170)
|.++|+
T Consensus 92 ~~~~l~ 97 (97)
T cd02949 92 YREFIE 97 (97)
T ss_pred HHHhhC
Confidence 888763
No 39
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.79 E-value=4.8e-08 Score=68.59 Aligned_cols=77 Identities=26% Similarity=0.358 Sum_probs=63.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccC----CcccEEEEEcCCcHHHHHhcCC-cccEE--EeCCEEE--EecCCCHHHH
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYL----DRVHLEEVYLTPESYWYKLYRY-EIPVL--FLGGRFV--CRNRFNAQIL 135 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~----~e~~~eeIDId~d~el~~~y~~-~VPVl--~idGe~i--~~~r~d~e~L 135 (170)
..+.|+.|+++||+.|...+..+.++. .++.|-.+|+++++++.++|+- .+|.+ +.+|+.. ..+..+.+.|
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred CCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 467799999999999999999988643 2588999999999999999985 69944 4588665 5566799999
Q ss_pred HHHHHh
Q psy17234 136 MSNECI 141 (170)
Q Consensus 136 ~~~L~~ 141 (170)
.++|+.
T Consensus 97 ~~~i~~ 102 (103)
T PF00085_consen 97 IEFIEK 102 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999874
No 40
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.72 E-value=6.9e-08 Score=73.55 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCCc--ccEEEEEcCCcH-----------HHHHhcCC-----ccc--EEEeCCEE
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLDR--VHLEEVYLTPES-----------YWYKLYRY-----EIP--VLFLGGRF 124 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~e--~~~eeIDId~d~-----------el~~~y~~-----~VP--Vl~idGe~ 124 (170)
....++.|+++|||+|..+...|+++..+ ..+..+|++.+. ++.+.|+. .|| +++.||+.
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~ 102 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQ 102 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeE
Confidence 34569999999999999999999987543 679999999652 44455653 399 44569987
Q ss_pred EEe--c-CCCHHHHHHHHH
Q psy17234 125 VCR--N-RFNAQILMSNEC 140 (170)
Q Consensus 125 i~~--~-r~d~e~L~~~L~ 140 (170)
+.. | ..+.++|++.+.
T Consensus 103 v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 103 VSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred EEEEeCCCCCHHHHHHHhh
Confidence 733 2 456888877664
No 41
>PHA02278 thioredoxin-like protein
Probab=98.71 E-value=1.1e-07 Score=70.67 Aligned_cols=75 Identities=23% Similarity=0.383 Sum_probs=59.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCCc----ccEEEEEcCCc----HHHHHhcC-CcccE--EEeCCEEE--EecCC
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLDR----VHLEEVYLTPE----SYWYKLYR-YEIPV--LFLGGRFV--CRNRF 130 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~e----~~~eeIDId~d----~el~~~y~-~~VPV--l~idGe~i--~~~r~ 130 (170)
...+.|+.|+.+||+.|......++++..+ ..+..+|||.+ +++.++|+ ..+|. +|.||+.+ ..|..
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~~~~G~~ 92 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVKKYEDQV 92 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEEEEeCCC
Confidence 456789999999999999999999876432 56999999987 68999998 47994 45699877 44567
Q ss_pred CHHHHHHH
Q psy17234 131 NAQILMSN 138 (170)
Q Consensus 131 d~e~L~~~ 138 (170)
++++|.++
T Consensus 93 ~~~~l~~~ 100 (103)
T PHA02278 93 TPMQLQEL 100 (103)
T ss_pred CHHHHHhh
Confidence 88887764
No 42
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.71 E-value=9.9e-08 Score=67.45 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccC----CcccEEEEEcCCcHHHHHhcCC-cccEE--EeCCEEE--EecCCCHHHH
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYL----DRVHLEEVYLTPESYWYKLYRY-EIPVL--FLGGRFV--CRNRFNAQIL 135 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~----~e~~~eeIDId~d~el~~~y~~-~VPVl--~idGe~i--~~~r~d~e~L 135 (170)
..+.+..|+.+||+.|......++++. ..+.+..+|++.++++.++|+. .+|.+ +.+|+.+ ..+..+.++|
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 91 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDGFQGAQPEEQL 91 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeeeecCCCCHHHH
Confidence 457799999999999999998888654 2367889999999999999984 79944 4588765 4566788999
Q ss_pred HHHHH
Q psy17234 136 MSNEC 140 (170)
Q Consensus 136 ~~~L~ 140 (170)
+.+|+
T Consensus 92 ~~~l~ 96 (96)
T cd02956 92 RQMLD 96 (96)
T ss_pred HHHhC
Confidence 88763
No 43
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.3e-08 Score=86.71 Aligned_cols=83 Identities=20% Similarity=0.181 Sum_probs=72.6
Q ss_pred cCCCCeEEEEcCCCCchHHHHHHHHhcc----CCcccEEEEEcCCcHHHHHhcCC-ccc--EEEeCCEEE--EecCCCHH
Q psy17234 63 SQRKPMLNLFTKDPCPLCDELKLELTPY----LDRVHLEEVYLTPESYWYKLYRY-EIP--VLFLGGRFV--CRNRFNAQ 133 (170)
Q Consensus 63 s~~~~~VtLYTk~~CplCd~Ak~~L~~l----~~e~~~eeIDId~d~el~~~y~~-~VP--Vl~idGe~i--~~~r~d~e 133 (170)
|...|-|+.|+.|||+.|......|+++ ++.|.+-.+|+|+++.....++. .|| ++|+||+.+ +.|..+++
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPes 120 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPES 120 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHH
Confidence 3556889999999999999999999975 44599999999999999999994 799 447899998 77888899
Q ss_pred HHHHHHHhcccc
Q psy17234 134 ILMSNECIFQCQ 145 (170)
Q Consensus 134 ~L~~~L~~~~~~ 145 (170)
.|+++|.++...
T Consensus 121 qlr~~ld~~~~~ 132 (304)
T COG3118 121 QLRQFLDKVLPA 132 (304)
T ss_pred HHHHHHHHhcCh
Confidence 999999988776
No 44
>PRK10996 thioredoxin 2; Provisional
Probab=98.68 E-value=1.4e-07 Score=72.91 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhcc----CCcccEEEEEcCCcHHHHHhcC-CcccEE--EeCCEEE--EecCCCHHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPY----LDRVHLEEVYLTPESYWYKLYR-YEIPVL--FLGGRFV--CRNRFNAQI 134 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l----~~e~~~eeIDId~d~el~~~y~-~~VPVl--~idGe~i--~~~r~d~e~ 134 (170)
...+.++.|+.+||+.|......++++ ...+.+..+|+++++++.++|+ ..+|.+ +.+|+.+ ..+..+++.
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~ 130 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAP 130 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHH
Confidence 346679999999999999988887764 3347889999999999999998 479944 4588876 456789999
Q ss_pred HHHHHHhc
Q psy17234 135 LMSNECIF 142 (170)
Q Consensus 135 L~~~L~~~ 142 (170)
|+++|.+.
T Consensus 131 l~~~l~~~ 138 (139)
T PRK10996 131 FDSWLNEA 138 (139)
T ss_pred HHHHHHHh
Confidence 99999753
No 45
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.67 E-value=4.7e-08 Score=74.76 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=55.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCc----ccEEEEEcCCcHHHHHhcC-Cccc--EEEeCCEEE--EecCCCHHHH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDR----VHLEEVYLTPESYWYKLYR-YEIP--VLFLGGRFV--CRNRFNAQIL 135 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e----~~~eeIDId~d~el~~~y~-~~VP--Vl~idGe~i--~~~r~d~e~L 135 (170)
.+.|+.|+.+||+.|......|+++..+ +.|..||+|+++++.++|+ ..|| ++|.||+.+ ..+..|.++|
T Consensus 15 ~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~~~~~~ 93 (114)
T cd02954 15 KVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGTGNNNKI 93 (114)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCCCCCceE
Confidence 4568889999999999999999876533 5789999999999999999 5799 446699876 3344555444
No 46
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.64 E-value=8.7e-08 Score=88.72 Aligned_cols=77 Identities=12% Similarity=0.163 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccC---CcccEEEEEcCCcHHHHHhcCC-cccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYL---DRVHLEEVYLTPESYWYKLYRY-EIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~---~e~~~eeIDId~d~el~~~y~~-~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
+.+..|.+|..++||+|..+.+.++++. ..++.+.+|+.+.+++.++|+. .||-+++||+.+..++.+.+++.++|
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i~~~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVVDDQQVYFGKKTIEEMLELI 554 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEECCEEEEeeCCCHHHHHHhh
Confidence 4566799999999999999999988653 2489999999999999999996 69999999999888999999999987
Q ss_pred H
Q psy17234 140 C 140 (170)
Q Consensus 140 ~ 140 (170)
.
T Consensus 555 ~ 555 (555)
T TIGR03143 555 G 555 (555)
T ss_pred C
Confidence 3
No 47
>PRK09381 trxA thioredoxin; Provisional
Probab=98.63 E-value=2.5e-07 Score=67.07 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=63.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhcc----CCcccEEEEEcCCcHHHHHhcC-CcccEE--EeCCEEE--EecCCCHHHH
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPY----LDRVHLEEVYLTPESYWYKLYR-YEIPVL--FLGGRFV--CRNRFNAQIL 135 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l----~~e~~~eeIDId~d~el~~~y~-~~VPVl--~idGe~i--~~~r~d~e~L 135 (170)
..+.+..|+.+|||.|......++++ ...+.+..+|++..+.+.++|+ ..+|.+ +.+|+.+ ..+..+.++|
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l 100 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQL 100 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEEEEecCCCCHHHH
Confidence 45679999999999999999888754 3337889999999999999988 479954 4588766 5567899999
Q ss_pred HHHHHhcc
Q psy17234 136 MSNECIFQ 143 (170)
Q Consensus 136 ~~~L~~~~ 143 (170)
+++|....
T Consensus 101 ~~~i~~~~ 108 (109)
T PRK09381 101 KEFLDANL 108 (109)
T ss_pred HHHHHHhc
Confidence 99987654
No 48
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.62 E-value=2.4e-07 Score=67.31 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=59.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC----c-ccEEEEEcCCcHHHHHhcC-Cccc--EEEeCCEEE-EecCCCHHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD----R-VHLEEVYLTPESYWYKLYR-YEIP--VLFLGGRFV-CRNRFNAQI 134 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~----e-~~~eeIDId~d~el~~~y~-~~VP--Vl~idGe~i-~~~r~d~e~ 134 (170)
...+.+..|+.+||+.|......++++.. . +.|..+|+| ++++.++|+ ..+| +++.||+.+ ...+.+++.
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~ 94 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGELVAVIRGANAPL 94 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEEEEEEecCChHH
Confidence 34567999999999999999998876422 2 578899999 778888998 4799 445588765 334579999
Q ss_pred HHHHHHh
Q psy17234 135 LMSNECI 141 (170)
Q Consensus 135 L~~~L~~ 141 (170)
|+++|..
T Consensus 95 ~~~~i~~ 101 (102)
T cd02948 95 LNKTITE 101 (102)
T ss_pred HHHHHhh
Confidence 9999875
No 49
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.62 E-value=2e-07 Score=69.01 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=61.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC-----cccEEEEEcCCcHHHHHhcC-CcccEE--EeCCEEE--EecCCCHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD-----RVHLEEVYLTPESYWYKLYR-YEIPVL--FLGGRFV--CRNRFNAQ 133 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~-----e~~~eeIDId~d~el~~~y~-~~VPVl--~idGe~i--~~~r~d~e 133 (170)
...+.++.|+.|||+.|......++++.. ++.+-.+|++.++++.++|+ ..+|.+ +.+|+.+ ..+..+.+
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~ 102 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVTFYHDSSFTKQ 102 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEEEEecCCCCHH
Confidence 44678999999999999998887765432 37789999999999999998 579944 4688776 33557899
Q ss_pred HHHHHHHh
Q psy17234 134 ILMSNECI 141 (170)
Q Consensus 134 ~L~~~L~~ 141 (170)
.|.++|.+
T Consensus 103 ~l~~~i~~ 110 (111)
T cd02963 103 HVVDFVRK 110 (111)
T ss_pred HHHHHHhc
Confidence 99888864
No 50
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.61 E-value=3.3e-07 Score=66.86 Aligned_cols=78 Identities=9% Similarity=0.079 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCC---cccEEEEEcCCcH---HHHHhcCC-cccE--EEeCCEEE-EecCCCHHH
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLD---RVHLEEVYLTPES---YWYKLYRY-EIPV--LFLGGRFV-CRNRFNAQI 134 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~---e~~~eeIDId~d~---el~~~y~~-~VPV--l~idGe~i-~~~r~d~e~ 134 (170)
..+.|+.|+.+||+.|......|+++.. .+.|..+|+|+++ ++.++|+- .+|. ++.||+.+ ..-+.++++
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~~~~ 94 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKIHEEEGIGPDE 94 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEEEEEeCCCHHH
Confidence 4677999999999999999999886543 3789999999884 78888884 6993 44588765 445789999
Q ss_pred HHHHHHhc
Q psy17234 135 LMSNECIF 142 (170)
Q Consensus 135 L~~~L~~~ 142 (170)
|++.+.++
T Consensus 95 l~~~~~~~ 102 (103)
T cd02985 95 LIGDVLYY 102 (103)
T ss_pred HHHHHHhc
Confidence 99888664
No 51
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.58 E-value=4e-07 Score=68.11 Aligned_cols=75 Identities=15% Similarity=0.242 Sum_probs=59.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCCc---ccEEEEEcCCcHHHHHhcCC-cccEE--EeCCEEEEe----------c
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLDR---VHLEEVYLTPESYWYKLYRY-EIPVL--FLGGRFVCR----------N 128 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~e---~~~eeIDId~d~el~~~y~~-~VPVl--~idGe~i~~----------~ 128 (170)
...-|+.|+.+||+.|..+...|+++..+ +.|..||+++.+++.++|+- .+|.+ |.+|+.+.. .
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g~~~~~~~~ 101 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVDRIVGFEELGGKD 101 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEEEEECccccCCCC
Confidence 35679999999999999999999876433 79999999999999999984 79944 458876621 3
Q ss_pred CCCHHHHHHHH
Q psy17234 129 RFNAQILMSNE 139 (170)
Q Consensus 129 r~d~e~L~~~L 139 (170)
.++.+.++++|
T Consensus 102 ~~~~~~~e~~~ 112 (113)
T cd02989 102 DFSTETLEKRL 112 (113)
T ss_pred CCCHHHHHHHh
Confidence 46667777665
No 52
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.57 E-value=4.8e-07 Score=60.83 Aligned_cols=74 Identities=19% Similarity=0.221 Sum_probs=59.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccC---CcccEEEEEcCCcHHHHHhcCC-cccEEEe--CCEEE--EecCCCHHHHHH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYL---DRVHLEEVYLTPESYWYKLYRY-EIPVLFL--GGRFV--CRNRFNAQILMS 137 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~---~e~~~eeIDId~d~el~~~y~~-~VPVl~i--dGe~i--~~~r~d~e~L~~ 137 (170)
.+-+.+|+.+||++|..+.+.++++. .++.+..+|.+.++++.++|+. .+|.+++ +|+.+ ..+..+.+.|.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~ 90 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEE 90 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEecCCCHHHHHH
Confidence 56699999999999999999998743 3389999999999999999985 7996554 77643 445567788877
Q ss_pred HH
Q psy17234 138 NE 139 (170)
Q Consensus 138 ~L 139 (170)
+|
T Consensus 91 ~i 92 (93)
T cd02947 91 FL 92 (93)
T ss_pred Hh
Confidence 66
No 53
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.56 E-value=3.3e-07 Score=64.56 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=59.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCC----cccEEEEEcCCcHHHHHhcCC-cccE--EEeCCEEE-EecCCCHHHHHH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLD----RVHLEEVYLTPESYWYKLYRY-EIPV--LFLGGRFV-CRNRFNAQILMS 137 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~----e~~~eeIDId~d~el~~~y~~-~VPV--l~idGe~i-~~~r~d~e~L~~ 137 (170)
..-++.|+.+||+.|..+...|+++.. .+.+..+|+++.+++.++|+. .+|. ++.+|+.+ ...+++.++|.+
T Consensus 15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 94 (97)
T cd02984 15 KLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVDRVSGADPKELAK 94 (97)
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEEEEeCCCHHHHHH
Confidence 566889999999999999999886432 378889999988999999984 6994 45588776 334689999988
Q ss_pred HH
Q psy17234 138 NE 139 (170)
Q Consensus 138 ~L 139 (170)
.+
T Consensus 95 ~~ 96 (97)
T cd02984 95 KV 96 (97)
T ss_pred hh
Confidence 76
No 54
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.54 E-value=2.5e-07 Score=84.72 Aligned_cols=79 Identities=10% Similarity=0.106 Sum_probs=69.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccC---CcccEEEEEcCCcHHHHHhcCC-cccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYL---DRVHLEEVYLTPESYWYKLYRY-EIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~---~e~~~eeIDId~d~el~~~y~~-~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
+.+..|++|..++||+|..+.+.++++. ..++.+.||..+.+++.++|+. .||.+++||+.+..+..+.++|.+.+
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~ 194 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKL 194 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHH
Confidence 4567899999999999999999988754 3489999999999999999985 69999999999988999999999998
Q ss_pred Hhc
Q psy17234 140 CIF 142 (170)
Q Consensus 140 ~~~ 142 (170)
.+-
T Consensus 195 ~~~ 197 (517)
T PRK15317 195 DTG 197 (517)
T ss_pred hcc
Confidence 753
No 55
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.52 E-value=4.4e-07 Score=62.21 Aligned_cols=69 Identities=17% Similarity=0.320 Sum_probs=52.1
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc--HHHHHhcCCcccEEEeC----CEEEEecCCCHHHHHHHHHh
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE--SYWYKLYRYEIPVLFLG----GRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d--~el~~~y~~~VPVl~id----Ge~i~~~r~d~e~L~~~L~~ 141 (170)
+++||+.++||+|.+++.+|...+ ++|+.++++.. +++.......||+++.+ |..+ .+...|.+.|+.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~g--i~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~~l----~eS~~I~~yL~~ 74 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHG--IPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQL----VDSSVIISTLKT 74 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC--CceEEEECCchhHHHHHHhCCCccCEEEECCCCCccEE----EcHHHHHHHHHH
Confidence 489999999999999999999965 67877887654 34433333579999987 5543 677788887765
Q ss_pred c
Q psy17234 142 F 142 (170)
Q Consensus 142 ~ 142 (170)
.
T Consensus 75 ~ 75 (77)
T cd03040 75 Y 75 (77)
T ss_pred H
Confidence 3
No 56
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.51 E-value=6.3e-07 Score=62.50 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=60.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccC----CcccEEEEEcCCcHHHHHhcCC-cccEEEe--CCEEE--EecCCCHHHHH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYL----DRVHLEEVYLTPESYWYKLYRY-EIPVLFL--GGRFV--CRNRFNAQILM 136 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~----~e~~~eeIDId~d~el~~~y~~-~VPVl~i--dGe~i--~~~r~d~e~L~ 136 (170)
...+..|+.+||+.|......++++. ..+.|..+|.+.++++.++|+. .+|.+++ +|+.. ..+..+.+.|.
T Consensus 15 ~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~ 94 (101)
T TIGR01068 15 KPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALK 94 (101)
T ss_pred CcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEeeeecCCCCHHHHH
Confidence 46788999999999999998887643 3488999999999999999984 7995543 77654 44567789999
Q ss_pred HHHHh
Q psy17234 137 SNECI 141 (170)
Q Consensus 137 ~~L~~ 141 (170)
++|.+
T Consensus 95 ~~l~~ 99 (101)
T TIGR01068 95 QLINK 99 (101)
T ss_pred HHHHh
Confidence 98875
No 57
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.51 E-value=1e-06 Score=61.02 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=51.6
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcH----HHHHhcC-CcccEEEeC--CEEEEecCCCHHHHHHHHHh
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPES----YWYKLYR-YEIPVLFLG--GRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~----el~~~y~-~~VPVl~id--Ge~i~~~r~d~e~L~~~L~~ 141 (170)
++||+.++||+|.+++.+|++.+ ++|+.+|++.+. ++.+... .+||++..+ |.. -++...|.+.|++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g--i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~----l~es~~I~~yL~~ 75 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE--LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ----MFESADIVKYLFK 75 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC--CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE----EEcHHHHHHHHHH
Confidence 78999999999999999999965 788888887652 3443333 479999874 433 3788888888864
No 58
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.50 E-value=6.7e-07 Score=68.19 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=59.6
Q ss_pred CCCCeEEEEcCCC--CchHHHHHHHHhccCCc----ccEEEEEcCCcHHHHHhcCC-ccc--EEEeCCEEE--EecCCCH
Q psy17234 64 QRKPMLNLFTKDP--CPLCDELKLELTPYLDR----VHLEEVYLTPESYWYKLYRY-EIP--VLFLGGRFV--CRNRFNA 132 (170)
Q Consensus 64 ~~~~~VtLYTk~~--CplCd~Ak~~L~~l~~e----~~~eeIDId~d~el~~~y~~-~VP--Vl~idGe~i--~~~r~d~ 132 (170)
.....|..|+.+| ||.|...+..|+++..+ +.|..+|+++++++..+|+- .|| ++|.||+.+ ..|..+.
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~~~~G~~~~ 105 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVGVLAGIRDW 105 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEEEEeCccCH
Confidence 4467899999997 99999999999876543 56889999999999999995 699 446699876 4466777
Q ss_pred HHHHH
Q psy17234 133 QILMS 137 (170)
Q Consensus 133 e~L~~ 137 (170)
++|.+
T Consensus 106 ~e~~~ 110 (111)
T cd02965 106 DEYVA 110 (111)
T ss_pred HHHhh
Confidence 76653
No 59
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.48 E-value=3.6e-07 Score=65.87 Aligned_cols=76 Identities=20% Similarity=0.182 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHH------h-ccCCcccEEEEEcCCc----HHHHHhcCC-cccEE-Ee---CCEEE--E
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLEL------T-PYLDRVHLEEVYLTPE----SYWYKLYRY-EIPVL-FL---GGRFV--C 126 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L------~-~l~~e~~~eeIDId~d----~el~~~y~~-~VPVl-~i---dGe~i--~ 126 (170)
..+.++.|+.+||++|.+....+ . .+...+.+..+|++++ +++.++|+. .+|.+ ++ ||+.. .
T Consensus 11 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~ 90 (104)
T cd02953 11 GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPLRL 90 (104)
T ss_pred CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCccc
Confidence 35668899999999999998655 1 2333578889999874 678888884 79944 33 35543 4
Q ss_pred ecCCCHHHHHHHHH
Q psy17234 127 RNRFNAQILMSNEC 140 (170)
Q Consensus 127 ~~r~d~e~L~~~L~ 140 (170)
.+..+.++|.+.|+
T Consensus 91 ~G~~~~~~l~~~l~ 104 (104)
T cd02953 91 PGFLTADEFLEALE 104 (104)
T ss_pred ccccCHHHHHHHhC
Confidence 56789999888763
No 60
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.47 E-value=5.2e-07 Score=82.69 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=69.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccC---CcccEEEEEcCCcHHHHHhcCC-cccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYL---DRVHLEEVYLTPESYWYKLYRY-EIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~---~e~~~eeIDId~d~el~~~y~~-~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
+.+..|++|..+.||+|..+++.+.++. ..++.+.+|..+.+++.++|+. .||.+++||+.+..+..+.+++.+.+
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l 195 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKL 195 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHH
Confidence 4567899999999999999999988754 3488999999999999999985 69999999999999999999998888
Q ss_pred Hhc
Q psy17234 140 CIF 142 (170)
Q Consensus 140 ~~~ 142 (170)
...
T Consensus 196 ~~~ 198 (515)
T TIGR03140 196 EET 198 (515)
T ss_pred hhc
Confidence 765
No 61
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.44 E-value=9.8e-07 Score=62.99 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=57.9
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCC-----cccEEEEEcCCcHHHHHhcCC-cccEEE--eCCEEE-EecCCCHHHHHHH
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLD-----RVHLEEVYLTPESYWYKLYRY-EIPVLF--LGGRFV-CRNRFNAQILMSN 138 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~-----e~~~eeIDId~d~el~~~y~~-~VPVl~--idGe~i-~~~r~d~e~L~~~ 138 (170)
.++.|+.+||+.|......++++.. .+.+-.+|.++++++.++|+. .+|.++ .+|+.. ..+..+.+.|.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~G~~~~~~l~~~ 98 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGVFRRYQGPRDKEDLISF 98 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCCEEEecCCCCHHHHHHH
Confidence 6899999999999999999886532 378899999999999999985 699554 477642 4566788888887
Q ss_pred HH
Q psy17234 139 EC 140 (170)
Q Consensus 139 L~ 140 (170)
|.
T Consensus 99 i~ 100 (101)
T cd02994 99 IE 100 (101)
T ss_pred Hh
Confidence 64
No 62
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.44 E-value=1.5e-06 Score=64.63 Aligned_cols=79 Identities=23% Similarity=0.383 Sum_probs=58.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhc-------cCCcccEEEEEcCCc-------------HHHHHhcC-CcccEE-EeC--
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTP-------YLDRVHLEEVYLTPE-------------SYWYKLYR-YEIPVL-FLG-- 121 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~-------l~~e~~~eeIDId~d-------------~el~~~y~-~~VPVl-~id-- 121 (170)
.+.++.|+.+||++|...++.+.+ +...+.+..+|++++ .++..+|+ ..+|.+ |++
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~ 94 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLDPE 94 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEcCC
Confidence 577999999999999999876632 223477888999875 57888888 479954 443
Q ss_pred -CEEE--EecCCCHHHHHHHHHhccc
Q psy17234 122 -GRFV--CRNRFNAQILMSNECIFQC 144 (170)
Q Consensus 122 -Ge~i--~~~r~d~e~L~~~L~~~~~ 144 (170)
|+.+ ..|..+.+.+.+.|+.+..
T Consensus 95 gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 95 GGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred CCceeEEecCCCCHHHHHHHHHHHHh
Confidence 4554 4566889999999987654
No 63
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.44 E-value=1.5e-06 Score=55.76 Aligned_cols=67 Identities=21% Similarity=0.175 Sum_probs=45.5
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHH--HHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESY--WYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~e--l~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
++||+.++||+|.+++.+|+..+.++++..++.+.+.. +.+... ..+|++..+|..+ .+...|.+.|
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~----~es~~I~~yl 70 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVL----TESLAILEYL 70 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEE----EcHHHHHHHh
Confidence 37999999999999999999876444444444433322 344343 4799999999876 3445555544
No 64
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.43 E-value=9.5e-07 Score=65.30 Aligned_cols=73 Identities=12% Similarity=0.256 Sum_probs=57.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCc---ccEEEEEcCCcHHHHHhcCC-cccE--EEeCCEEEEe---------cCC
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDR---VHLEEVYLTPESYWYKLYRY-EIPV--LFLGGRFVCR---------NRF 130 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e---~~~eeIDId~d~el~~~y~~-~VPV--l~idGe~i~~---------~r~ 130 (170)
.+.|+.|+.|||+.|......|+++..+ +.|..+|++++ ++.++|+- .+|. +|.||+.+.. -.+
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~~~~~~~ 103 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGELIDNIVGFEELGGDDF 103 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEEEEEEecHHHhCCCCC
Confidence 5678899999999999999999876433 67899999988 99999985 7994 4568987621 346
Q ss_pred CHHHHHHHH
Q psy17234 131 NAQILMSNE 139 (170)
Q Consensus 131 d~e~L~~~L 139 (170)
+.+.|+++|
T Consensus 104 ~~~~l~~~l 112 (113)
T cd02957 104 TTEDLEKFL 112 (113)
T ss_pred CHHHHHHHh
Confidence 777777765
No 65
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.42 E-value=1.3e-06 Score=61.36 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhcc----CC--cccEEEEEcCCcHHHHHhcCC-cccEEE-e-CCE-E-EEecCCCH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPY----LD--RVHLEEVYLTPESYWYKLYRY-EIPVLF-L-GGR-F-VCRNRFNA 132 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l----~~--e~~~eeIDId~d~el~~~y~~-~VPVl~-i-dGe-~-i~~~r~d~ 132 (170)
...+.+++|+.+||+.|......++++ .. .+.+..+|+++++++.++|+. .+|.++ + +|+ . ...+..+.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~ 91 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKPVDYEGGRDL 91 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcceeecCCCCH
Confidence 446779999999999999987777653 22 378899999999999999984 699653 3 444 2 24567788
Q ss_pred HHHHHHHHhc
Q psy17234 133 QILMSNECIF 142 (170)
Q Consensus 133 e~L~~~L~~~ 142 (170)
++|.++|+..
T Consensus 92 ~~l~~~i~~~ 101 (102)
T TIGR01126 92 EAIVEFVNEK 101 (102)
T ss_pred HHHHHHHHhc
Confidence 9999888753
No 66
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.42 E-value=1e-06 Score=63.76 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=59.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCC-------cccEEEEEcCCcHHHHHhcC-CcccEE-Ee-CCEEE-EecCCCHH
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLD-------RVHLEEVYLTPESYWYKLYR-YEIPVL-FL-GGRFV-CRNRFNAQ 133 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~-------e~~~eeIDId~d~el~~~y~-~~VPVl-~i-dGe~i-~~~r~d~e 133 (170)
..+.++.|+.+||+.|......++++.. .+.+..+|++..+++.++|+ ..+|.+ ++ +|... ..+..+.+
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~~~~~G~~~~~ 94 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLAYNYRGPRTKD 94 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCceeecCCCCHH
Confidence 4577999999999999999888876432 26677889998899999998 479944 33 55333 45678899
Q ss_pred HHHHHHHhcc
Q psy17234 134 ILMSNECIFQ 143 (170)
Q Consensus 134 ~L~~~L~~~~ 143 (170)
.|.+++.+.+
T Consensus 95 ~l~~~~~~~~ 104 (104)
T cd03000 95 DIVEFANRVA 104 (104)
T ss_pred HHHHHHHhhC
Confidence 9999887753
No 67
>PTZ00051 thioredoxin; Provisional
Probab=98.41 E-value=1.3e-06 Score=61.74 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=57.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCC---cccEEEEEcCCcHHHHHhcCC-cccEE--EeCCEEE-EecCCCHHHHHH
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLD---RVHLEEVYLTPESYWYKLYRY-EIPVL--FLGGRFV-CRNRFNAQILMS 137 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~---e~~~eeIDId~d~el~~~y~~-~VPVl--~idGe~i-~~~r~d~e~L~~ 137 (170)
....+..|+.+||+.|......++.+.. ++.|..+|++++.++.++|+. .+|.+ +.+|+.+ ...+.+.++|++
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVVDTLLGANDEALKQ 97 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEEEEEeCCCHHHhhc
Confidence 4567899999999999999998887543 278899999998999999985 79944 4488765 444578887764
No 68
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.41 E-value=1.6e-06 Score=71.11 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=58.4
Q ss_pred CCCeEEEEcC---CCCchHHHHHHHHhccCCc---ccEEEEEcC--CcHHHHHhcCC-cccEE--EeCCEEE---EecCC
Q psy17234 65 RKPMLNLFTK---DPCPLCDELKLELTPYLDR---VHLEEVYLT--PESYWYKLYRY-EIPVL--FLGGRFV---CRNRF 130 (170)
Q Consensus 65 ~~~~VtLYTk---~~CplCd~Ak~~L~~l~~e---~~~eeIDId--~d~el~~~y~~-~VPVl--~idGe~i---~~~r~ 130 (170)
....|.+|+. +||+.|+.+...|+++..+ +.+..+|+| +++++.++|+. .+|.+ |.||+.+ ..+..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 3456888888 9999999999999876433 445556665 77999999994 79944 3477654 45778
Q ss_pred CHHHHHHHHHhc
Q psy17234 131 NAQILMSNECIF 142 (170)
Q Consensus 131 d~e~L~~~L~~~ 142 (170)
+.++|.++|...
T Consensus 99 ~~~~l~~~i~~~ 110 (215)
T TIGR02187 99 AGYEFAALIEDI 110 (215)
T ss_pred CHHHHHHHHHHH
Confidence 888998888766
No 69
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.38 E-value=1.1e-06 Score=63.03 Aligned_cols=73 Identities=14% Similarity=0.194 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCC----cccEEEEEcCCcHHHHHhcCC-cccEE--EeCCEEE--EecCCCHHHH
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLD----RVHLEEVYLTPESYWYKLYRY-EIPVL--FLGGRFV--CRNRFNAQIL 135 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~----e~~~eeIDId~d~el~~~y~~-~VPVl--~idGe~i--~~~r~d~e~L 135 (170)
....++.|+.+||+.|......++++.. .+.+-.+|+++++++.++|+- .+|.+ +.+|+.. ..+..+.+.|
T Consensus 18 ~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l 97 (101)
T cd03003 18 GEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESL 97 (101)
T ss_pred CCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCCcccCCCCCCHHHH
Confidence 3567899999999999999999886543 367899999999999999884 79955 4477643 3345566655
Q ss_pred HH
Q psy17234 136 MS 137 (170)
Q Consensus 136 ~~ 137 (170)
.+
T Consensus 98 ~~ 99 (101)
T cd03003 98 VK 99 (101)
T ss_pred Hh
Confidence 54
No 70
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.37 E-value=1e-06 Score=63.16 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCC----cccEEEEEcCCcHHHHHhcC-CcccEE--EeCC-EEE--EecCCC-HH
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLD----RVHLEEVYLTPESYWYKLYR-YEIPVL--FLGG-RFV--CRNRFN-AQ 133 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~----e~~~eeIDId~d~el~~~y~-~~VPVl--~idG-e~i--~~~r~d-~e 133 (170)
..+.++.|+.+||+.|......++++.. .+.+-.+|.++++++.++|+ ..+|.+ +.+| +.. ..+..+ .+
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~ 98 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDAD 98 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHH
Confidence 3477999999999999999888876542 37889999999999999998 479944 3465 433 223344 77
Q ss_pred HHHHHH
Q psy17234 134 ILMSNE 139 (170)
Q Consensus 134 ~L~~~L 139 (170)
+|.++|
T Consensus 99 ~l~~~i 104 (104)
T cd03004 99 SILEFI 104 (104)
T ss_pred HHHhhC
Confidence 776653
No 71
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.35 E-value=1.5e-06 Score=62.87 Aligned_cols=76 Identities=25% Similarity=0.422 Sum_probs=52.0
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhc---c----CCcccEEEEEcCCcH--------------------HHHHhcCC-cc
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTP---Y----LDRVHLEEVYLTPES--------------------YWYKLYRY-EI 115 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~---l----~~e~~~eeIDId~d~--------------------el~~~y~~-~V 115 (170)
...+.|.+|+.+|||+|..+.+.+.+ + ..++.+..+|++.+. ++.+.|+. ..
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 45678999999999999999888763 2 223678888888753 35566774 69
Q ss_pred cEEE-eC--CEEE--EecCCCHHHHHHHH
Q psy17234 116 PVLF-LG--GRFV--CRNRFNAQILMSNE 139 (170)
Q Consensus 116 PVl~-id--Ge~i--~~~r~d~e~L~~~L 139 (170)
|.++ .| |+.+ ..|..++++|.+.|
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9654 45 7644 57899999999876
No 72
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.35 E-value=2.8e-06 Score=57.07 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=48.7
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc-HHHHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE-SYWYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d-~el~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
++||+.++||+|.+++..|+..+-+++...+|.... +++.+... ..||++..||..+ ++...|.+.|++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l----~es~aI~~yL~~ 71 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVL----YESRIIMEYLDE 71 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEE----EcHHHHHHHHHh
Confidence 479999999999999999999764344444444433 34444332 4799998888654 677788877764
No 73
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.34 E-value=2.4e-06 Score=66.37 Aligned_cols=81 Identities=25% Similarity=0.321 Sum_probs=62.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccC----CcccEEEEEcCCc--HHHHHhcCC-ccc-EEEe--CCEEE--EecCCC
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYL----DRVHLEEVYLTPE--SYWYKLYRY-EIP-VLFL--GGRFV--CRNRFN 131 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~----~e~~~eeIDId~d--~el~~~y~~-~VP-Vl~i--dGe~i--~~~r~d 131 (170)
...+.|+.|+.+||+.|......+.++. ..+.|..+|++.+ .++.++|+. .+| ++|+ +|+.+ ..|..+
T Consensus 19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~ 98 (142)
T cd02950 19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQP 98 (142)
T ss_pred CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 4557799999999999999999988653 2367888999876 477888884 699 3344 57665 456778
Q ss_pred HHHHHHHHHhccc
Q psy17234 132 AQILMSNECIFQC 144 (170)
Q Consensus 132 ~e~L~~~L~~~~~ 144 (170)
.++|++.|.+...
T Consensus 99 ~~~l~~~l~~l~~ 111 (142)
T cd02950 99 KQVLAQNLDALVA 111 (142)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999987654
No 74
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.32 E-value=2.4e-06 Score=62.04 Aligned_cols=74 Identities=23% Similarity=0.220 Sum_probs=55.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCC----------cccEEEEEcCCcHHHHHhcC-CcccEE--EeCCEE---EEecC
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLD----------RVHLEEVYLTPESYWYKLYR-YEIPVL--FLGGRF---VCRNR 129 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~----------e~~~eeIDId~d~el~~~y~-~~VPVl--~idGe~---i~~~r 129 (170)
...++.|..|||+.|......++++.. .+.+-.+|.++++++.++|+ ..+|.+ +.+|+. ...+.
T Consensus 19 ~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~ 98 (108)
T cd02996 19 ELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQ 98 (108)
T ss_pred CEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCcCcceecCCC
Confidence 456899999999999999998875421 36788999999999999998 479955 458873 23355
Q ss_pred CCHHHHHHHH
Q psy17234 130 FNAQILMSNE 139 (170)
Q Consensus 130 ~d~e~L~~~L 139 (170)
-+.+.|.++|
T Consensus 99 ~~~~~l~~fi 108 (108)
T cd02996 99 RSVEALAEFV 108 (108)
T ss_pred CCHHHHHhhC
Confidence 6677776653
No 75
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.32 E-value=1.9e-06 Score=60.91 Aligned_cols=75 Identities=24% Similarity=0.327 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccC------CcccEEEEEcCC--cHHHHHhcCC-cccEE--EeCCEEE--EecCCC
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYL------DRVHLEEVYLTP--ESYWYKLYRY-EIPVL--FLGGRFV--CRNRFN 131 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~------~e~~~eeIDId~--d~el~~~y~~-~VPVl--~idGe~i--~~~r~d 131 (170)
....++.|+.+||++|......++++. ..+.+..+|.+. ++++.++|+. .+|.+ +.+|+.. ..+..+
T Consensus 17 ~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~ 96 (104)
T cd02997 17 EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKFVEKYEGERT 96 (104)
T ss_pred CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCeeEEeCCCCC
Confidence 347799999999999999987776542 236788899998 6888888885 79944 4577643 556678
Q ss_pred HHHHHHHH
Q psy17234 132 AQILMSNE 139 (170)
Q Consensus 132 ~e~L~~~L 139 (170)
.+.|.++|
T Consensus 97 ~~~l~~~l 104 (104)
T cd02997 97 AEDIIEFM 104 (104)
T ss_pred HHHHHhhC
Confidence 88877654
No 76
>KOG0907|consensus
Probab=98.32 E-value=2.8e-06 Score=63.89 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=61.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCc---ccEEEEEcCCcHHHHHhcCC-ccc--EEEeCCEEE-EecCCCHHHHHHH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDR---VHLEEVYLTPESYWYKLYRY-EIP--VLFLGGRFV-CRNRFNAQILMSN 138 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e---~~~eeIDId~d~el~~~y~~-~VP--Vl~idGe~i-~~~r~d~e~L~~~ 138 (170)
..-|+-|+.+||+.|...+..+.++..+ ..|-.+|+|+.+++.+.|+- .+| +++.||+.+ ..-+.++++|++.
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~~l~~~ 101 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKAELEKK 101 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHHHHHHH
Confidence 4457789999999999999999976543 78999999998888899985 699 344588665 4447888899988
Q ss_pred HHhc
Q psy17234 139 ECIF 142 (170)
Q Consensus 139 L~~~ 142 (170)
++..
T Consensus 102 i~~~ 105 (106)
T KOG0907|consen 102 IAKH 105 (106)
T ss_pred HHhc
Confidence 8753
No 77
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.28 E-value=6.2e-06 Score=63.28 Aligned_cols=79 Identities=10% Similarity=-0.053 Sum_probs=59.0
Q ss_pred CCCCeEEEEcCCCCch--HH--HHHHHHh----cc--CCcccEEEEEcCCcHHHHHhcCC-ccc--EEEeCCEEEEe-cC
Q psy17234 64 QRKPMLNLFTKDPCPL--CD--ELKLELT----PY--LDRVHLEEVYLTPESYWYKLYRY-EIP--VLFLGGRFVCR-NR 129 (170)
Q Consensus 64 ~~~~~VtLYTk~~Cpl--Cd--~Ak~~L~----~l--~~e~~~eeIDId~d~el~~~y~~-~VP--Vl~idGe~i~~-~r 129 (170)
...+-|+.|..+||+. |. .....|. +. ..++.+-.||+|+++++.++|+- .+| ++|.||+.+.+ |.
T Consensus 26 ~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~~v~~~G~ 105 (120)
T cd03065 26 YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDEVIEYDGE 105 (120)
T ss_pred CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEEECCEEEEeeCC
Confidence 4456788888889976 98 4442222 22 23489999999999999999994 799 45679986643 56
Q ss_pred CCHHHHHHHHHhc
Q psy17234 130 FNAQILMSNECIF 142 (170)
Q Consensus 130 ~d~e~L~~~L~~~ 142 (170)
.+++.|.++|.+.
T Consensus 106 ~~~~~l~~~l~~~ 118 (120)
T cd03065 106 FAADTLVEFLLDL 118 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 7999999998764
No 78
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.26 E-value=4.7e-06 Score=62.98 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=58.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC----cccEEEEEcCCcHHHH-HhcC-CcccEE--EeCCEE--EEecCCCHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD----RVHLEEVYLTPESYWY-KLYR-YEIPVL--FLGGRF--VCRNRFNAQ 133 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~----e~~~eeIDId~d~el~-~~y~-~~VPVl--~idGe~--i~~~r~d~e 133 (170)
.....++.|..|||+.|..++..++++.. .+.+-.||+++++++. ++|+ ..+|.+ |.+|+. ...+..+.+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~~~~~y~G~~~~~ 107 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSRGPIEYKGPMRAP 107 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECCccceEEeCCCCHH
Confidence 45667999999999999999999887642 3678999999998887 5898 679944 567763 355777888
Q ss_pred HHHHH
Q psy17234 134 ILMSN 138 (170)
Q Consensus 134 ~L~~~ 138 (170)
.|..+
T Consensus 108 ~i~~~ 112 (113)
T cd03006 108 YMEKF 112 (113)
T ss_pred HHHhh
Confidence 87664
No 79
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.25 E-value=6.3e-06 Score=65.26 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCCc----ccEEEEEcCCcHHHHHhcCCc-cc-EE--EeCCE-EE--Eec-----
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLDR----VHLEEVYLTPESYWYKLYRYE-IP-VL--FLGGR-FV--CRN----- 128 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~e----~~~eeIDId~d~el~~~y~~~-VP-Vl--~idGe-~i--~~~----- 128 (170)
..+-|+-|+++||+.|....+.|+++..+ ..+..||||+.+++.+.|+.. +| ++ |.+|+ .+ ..|
T Consensus 23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~k~ 102 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKI 102 (142)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeEEEEEeccccccc
Confidence 44678999999999999999999987543 567999999999999999965 64 44 34787 33 222
Q ss_pred ---CCCHHHHHHHHHhccc
Q psy17234 129 ---RFNAQILMSNECIFQC 144 (170)
Q Consensus 129 ---r~d~e~L~~~L~~~~~ 144 (170)
-.+.++|.+.++.+.+
T Consensus 103 ~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 103 NWALKDKQEFIDIVETVYR 121 (142)
T ss_pred ccccCCHHHHHHHHHHHHH
Confidence 3677888888875543
No 80
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.25 E-value=3.5e-06 Score=61.56 Aligned_cols=75 Identities=11% Similarity=0.129 Sum_probs=56.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC---cccEEEEEcC-CcHHHHHhcCC-cccEE--EeCCEE-EEecCCCHHHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD---RVHLEEVYLT-PESYWYKLYRY-EIPVL--FLGGRF-VCRNRFNAQIL 135 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~---e~~~eeIDId-~d~el~~~y~~-~VPVl--~idGe~-i~~~r~d~e~L 135 (170)
+..+.++.|+.+||+.|......++++.. ++.+..+|.+ +++++.++|+- .+|.+ |.+|.. ...|..+.+.|
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~~~~~l 96 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTRTLDSL 96 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCCCCHHHH
Confidence 45678999999999999999999887643 2678888998 67899999984 79944 335622 25566777777
Q ss_pred HHH
Q psy17234 136 MSN 138 (170)
Q Consensus 136 ~~~ 138 (170)
.++
T Consensus 97 ~~f 99 (100)
T cd02999 97 AAF 99 (100)
T ss_pred Hhh
Confidence 665
No 81
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.25 E-value=6e-06 Score=56.71 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=53.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhc----c--CCcccEEEEEcCCcHHHHHhcC-CcccEEE-e-CC-EEE--EecCCCHH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTP----Y--LDRVHLEEVYLTPESYWYKLYR-YEIPVLF-L-GG-RFV--CRNRFNAQ 133 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~----l--~~e~~~eeIDId~d~el~~~y~-~~VPVl~-i-dG-e~i--~~~r~d~e 133 (170)
.+.+++|+++||++|..+...+.+ + ...+.+..+|.++++++.++|+ ..+|.++ + +| ... ..+..+.+
T Consensus 16 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~ 95 (101)
T cd02961 16 KDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLE 95 (101)
T ss_pred CcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHH
Confidence 378999999999999999998865 3 2448899999999999999998 4799554 3 44 222 33445666
Q ss_pred HHHHH
Q psy17234 134 ILMSN 138 (170)
Q Consensus 134 ~L~~~ 138 (170)
.|.++
T Consensus 96 ~i~~~ 100 (101)
T cd02961 96 SLVEF 100 (101)
T ss_pred HHHhh
Confidence 66554
No 82
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.22 E-value=6.1e-06 Score=66.58 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=59.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCc---ccEEEEEcCCcHHHHHhcCC-ccc--EEEeCCEEE---------EecCC
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDR---VHLEEVYLTPESYWYKLYRY-EIP--VLFLGGRFV---------CRNRF 130 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e---~~~eeIDId~d~el~~~y~~-~VP--Vl~idGe~i---------~~~r~ 130 (170)
.+.|+.|+.+||+.|......|+.+..+ +.|..||+++. ++...|+. .+| ++|.||+.+ ....|
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f 162 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDF 162 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCC
Confidence 3668889999999999999998876533 78999999987 88888984 799 445699765 22368
Q ss_pred CHHHHHHHHHhc
Q psy17234 131 NAQILMSNECIF 142 (170)
Q Consensus 131 d~e~L~~~L~~~ 142 (170)
+.+.|+.+|.+.
T Consensus 163 ~~~~le~~L~~~ 174 (175)
T cd02987 163 DAEDLESFLVEY 174 (175)
T ss_pred CHHHHHHHHHhc
Confidence 888888888653
No 83
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.21 E-value=4.9e-06 Score=58.88 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccC----CcccEEEEEcCCcHHHHHhcC-CcccEEE--eCCEE---EEecCCCHHH
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYL----DRVHLEEVYLTPESYWYKLYR-YEIPVLF--LGGRF---VCRNRFNAQI 134 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~----~e~~~eeIDId~d~el~~~y~-~~VPVl~--idGe~---i~~~r~d~e~ 134 (170)
..+.+.+|..+||+.|...+..+.++. ..+.+-.+|+++++++.++|+ ..+|.++ .+|.. ...+..+.+.
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~ 97 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKA 97 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHH
Confidence 345788999999999999988877643 337889999999999999988 4799553 35511 2446677777
Q ss_pred HHHHH
Q psy17234 135 LMSNE 139 (170)
Q Consensus 135 L~~~L 139 (170)
|.+++
T Consensus 98 l~~~~ 102 (103)
T cd03001 98 IVSAA 102 (103)
T ss_pred HHHHh
Confidence 76654
No 84
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.20 E-value=6.8e-06 Score=55.51 Aligned_cols=65 Identities=15% Similarity=0.326 Sum_probs=47.1
Q ss_pred EEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcH--HHHHhc-CCcccEEEeC-CEEEEecCCCHHHHHHHHH
Q psy17234 70 NLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPES--YWYKLY-RYEIPVLFLG-GRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 70 tLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~--el~~~y-~~~VPVl~id-Ge~i~~~r~d~e~L~~~L~ 140 (170)
+||+.++||+|.+++.+|...+ ++|+.++++.++ ...+.. ...||||+.| |..+ .+...|.+.|+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~g--l~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~~~~l----~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKN--IPVEQIILQNDDEATPIRMIGAKQVPILEKDDGSFM----AESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcC--CCeEEEECCCCchHHHHHhcCCCccCEEEeCCCeEe----ehHHHHHHHHh
Confidence 6999999999999999999865 677777776542 222332 3479999987 6554 56677776664
No 85
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.20 E-value=4.7e-06 Score=59.83 Aligned_cols=76 Identities=17% Similarity=0.105 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccC----CcccEEEEEcCC--cHHHHHhcC-CcccEEE--eCCE-------EEEe
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYL----DRVHLEEVYLTP--ESYWYKLYR-YEIPVLF--LGGR-------FVCR 127 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~----~e~~~eeIDId~--d~el~~~y~-~~VPVl~--idGe-------~i~~ 127 (170)
...+.++.|..+||+.|......++++. ..+.+..+|++. ++++.++|+ ..+|.++ .+|. ....
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~ 96 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYN 96 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCccccccccccc
Confidence 4455799999999999999988887653 236788899999 678888888 4799443 3553 1244
Q ss_pred cCCCHHHHHHHH
Q psy17234 128 NRFNAQILMSNE 139 (170)
Q Consensus 128 ~r~d~e~L~~~L 139 (170)
+..+.+.|.+++
T Consensus 97 G~~~~~~l~~fi 108 (109)
T cd03002 97 GERSAKAIVDFV 108 (109)
T ss_pred CccCHHHHHHHh
Confidence 667777777665
No 86
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.19 E-value=9.6e-06 Score=57.83 Aligned_cols=70 Identities=16% Similarity=0.297 Sum_probs=47.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHH-HHHhcC-CcccEEEeC-CEEEEecCCCHHHHHHHH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESY-WYKLYR-YEIPVLFLG-GRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~e-l~~~y~-~~VPVl~id-Ge~i~~~r~d~e~L~~~L 139 (170)
...++||+.+.||+|.+++.+|+..+-++++..+|....++ +.+... ..||++..| |..+ .+-..|.+.|
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l----~eS~aI~~yL 88 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVV----YESLIICEYL 88 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEE----ECHHHHHHhh
Confidence 56699999999999999999999976444444444433334 444433 479999987 6654 4455555444
No 87
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.18 E-value=5.2e-06 Score=58.62 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=55.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHhcc----CC---cccEEEEEcCCcHHHHHhcCC-cccEE--EeCCEEE--EecCCCHHH
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPY----LD---RVHLEEVYLTPESYWYKLYRY-EIPVL--FLGGRFV--CRNRFNAQI 134 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l----~~---e~~~eeIDId~d~el~~~y~~-~VPVl--~idGe~i--~~~r~d~e~ 134 (170)
..+..|+.+||+.|......++++ .. .+.+-.+|.+.++++.++|+. .+|.+ +.+|+.. ..+..+.+.
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~ 97 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDS 97 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCCeeeEeeCCCCHHH
Confidence 478999999999999988877654 22 378889999999999888884 69954 4477644 556788888
Q ss_pred HHHHH
Q psy17234 135 LMSNE 139 (170)
Q Consensus 135 L~~~L 139 (170)
|.++|
T Consensus 98 l~~~i 102 (102)
T cd03005 98 LKEFV 102 (102)
T ss_pred HHhhC
Confidence 77654
No 88
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.15 E-value=1.4e-05 Score=54.18 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=41.3
Q ss_pred EEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc-HHHHHhcC-CcccEEEeC-CEEE
Q psy17234 70 NLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE-SYWYKLYR-YEIPVLFLG-GRFV 125 (170)
Q Consensus 70 tLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d-~el~~~y~-~~VPVl~id-Ge~i 125 (170)
+||+.++||+|.+++.+|+..+.++++..+|.... +++.+... .+||++..+ |..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEE
Confidence 79999999999999999998765455555555443 44544443 479999985 7765
No 89
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.14 E-value=1.7e-05 Score=53.46 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=47.1
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc----HHHHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE----SYWYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~el~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
++||+.++||.|.+++.+|+..+.++++..+|.... +++.+... ..||++..+|..+ ++...|.+.|.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l----~es~aI~~yL~ 73 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVL----WESHAILIYLV 73 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEE----EcHHHHHHHHh
Confidence 479999999999999999999764444444554333 44544443 4799998888654 45555555553
No 90
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.14 E-value=1.1e-05 Score=67.89 Aligned_cols=82 Identities=15% Similarity=0.143 Sum_probs=63.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccC----CcccEEEEEcCCcHHHHHhcCC-cccEE--EeCCEEEEe--cCCCHHHHH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYL----DRVHLEEVYLTPESYWYKLYRY-EIPVL--FLGGRFVCR--NRFNAQILM 136 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~----~e~~~eeIDId~d~el~~~y~~-~VPVl--~idGe~i~~--~r~d~e~L~ 136 (170)
.+.++.|+.|||+.|...+..++++. ..+.+..+|.++++++.++|+. .+|.+ +.+|+.+.+ +..+.+.|.
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~ 132 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLA 132 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHH
Confidence 56789999999999999999887653 3367889999999999999984 79944 458877633 457899999
Q ss_pred HHHHhccccch
Q psy17234 137 SNECIFQCQEV 147 (170)
Q Consensus 137 ~~L~~~~~~~~ 147 (170)
+++..-..+++
T Consensus 133 ~fi~~~~~~~~ 143 (224)
T PTZ00443 133 AFALGDFKKAL 143 (224)
T ss_pred HHHHHHHHhhc
Confidence 98865444444
No 91
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.12 E-value=8.1e-06 Score=57.49 Aligned_cols=74 Identities=22% Similarity=0.189 Sum_probs=53.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccC------CcccEEEEEcCC-cHHHHHhcC-CcccEEE--eCC-E--EEEecCCCH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYL------DRVHLEEVYLTP-ESYWYKLYR-YEIPVLF--LGG-R--FVCRNRFNA 132 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~------~e~~~eeIDId~-d~el~~~y~-~~VPVl~--idG-e--~i~~~r~d~ 132 (170)
.+.+..|+.+||+.|......++++. ..+.+-.+|.+. .+++.++|+ ..+|.++ .+| + ....+..+.
T Consensus 19 ~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~ 98 (105)
T cd02998 19 KDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDL 98 (105)
T ss_pred CcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCCCCccccCCccCH
Confidence 46799999999999998888876532 237888999999 788988887 5799553 344 2 224456777
Q ss_pred HHHHHHH
Q psy17234 133 QILMSNE 139 (170)
Q Consensus 133 e~L~~~L 139 (170)
++|.++|
T Consensus 99 ~~l~~~i 105 (105)
T cd02998 99 EDLVKFV 105 (105)
T ss_pred HHHHhhC
Confidence 7776653
No 92
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.12 E-value=6.1e-06 Score=63.37 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCCc----ccEEEEEcCCcHHHHHhcCCc-cc--EEEeCCEEE
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLDR----VHLEEVYLTPESYWYKLYRYE-IP--VLFLGGRFV 125 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~e----~~~eeIDId~d~el~~~y~~~-VP--Vl~idGe~i 125 (170)
...-|.-|+++||+.|...-+.|+++..+ +.|..||+|+.+++.+.|+.. .| ++|.+|+++
T Consensus 14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 34568889999999999999999987643 679999999999999999975 99 656799886
No 93
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.11 E-value=1.9e-05 Score=52.62 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=45.4
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc----HHHHHhcC-CcccEEEe-CCEEEEecCCCHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE----SYWYKLYR-YEIPVLFL-GGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~el~~~y~-~~VPVl~i-dGe~i~~~r~d~e~L~~~L 139 (170)
++||+.++||+|.+++.+|...+-+++...+|...+ +++.+... ..||++.+ ||..+ .+...|.+.|
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l----~es~aI~~yL 73 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVI----TESVAICRYL 73 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEE----ecHHHHHHHh
Confidence 479999999999999999998765555566665432 34444443 47999987 55544 4444554443
No 94
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.10 E-value=3.5e-06 Score=61.81 Aligned_cols=71 Identities=11% Similarity=0.099 Sum_probs=47.2
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc----HHHHHhcCC---cccEEEe-CCEEE-----E-ecCCCHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE----SYWYKLYRY---EIPVLFL-GGRFV-----C-RNRFNAQI 134 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~el~~~y~~---~VPVl~i-dGe~i-----~-~~r~d~e~ 134 (170)
|++|++++|+.|.+|+++|++.+ ++|+++||.++ .+|.+..+. ++--++- .|... . ...++.++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~--i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls~~e 78 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHG--IEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELSDEE 78 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcC--CCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCCHHH
Confidence 58999999999999999999954 89999999876 344444332 2222222 22221 0 24577777
Q ss_pred HHHHHHh
Q psy17234 135 LMSNECI 141 (170)
Q Consensus 135 L~~~L~~ 141 (170)
+.+.|.+
T Consensus 79 ~~~~l~~ 85 (105)
T cd02977 79 ALELMAE 85 (105)
T ss_pred HHHHHHh
Confidence 7777753
No 95
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.09 E-value=1.5e-05 Score=63.42 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=49.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCC-----cccEEEEEcCCcHHHHHhcCC-c------cc--EEEeCCEEE
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLD-----RVHLEEVYLTPESYWYKLYRY-E------IP--VLFLGGRFV 125 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~-----e~~~eeIDId~d~el~~~y~~-~------VP--Vl~idGe~i 125 (170)
.+.|+.|..+||+.|......++++.. ++.+-.||+++++++.++|+- . +| ++|.||+.+
T Consensus 48 ~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v 121 (152)
T cd02962 48 VTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEV 121 (152)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEE
Confidence 456999999999999999998876532 378899999999999999984 3 89 446699876
No 96
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.08 E-value=4.9e-06 Score=62.31 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=31.3
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE 104 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d 104 (170)
|+||+.++|+.|.+|+++|++. +++|+++|+.++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~--~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEH--GVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHc--CCceEEecccCC
Confidence 5899999999999999999995 489999999887
No 97
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.03 E-value=3.8e-05 Score=59.62 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=31.0
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE 104 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d 104 (170)
+++|+.++|+.|.+|+++|++. +++|+++|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH--QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--CCCeEEEECCCC
Confidence 8999999999999999999995 489999998866
No 98
>PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2.3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C ....
Probab=98.02 E-value=4.3e-07 Score=70.21 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=36.2
Q ss_pred eecCCcceeeehhccccc--cceeEE-EeeCCCCcchhhhhc
Q psy17234 15 ITSQRKPMLNLFTKDLKA--HQKGIV-VYNTPESTMSVLLEK 53 (170)
Q Consensus 15 ~~~~~~ri~~~L~~~L~~--g~~G~a-iCnGgG~~~a~v~e~ 53 (170)
++-+|+|+++++++.|++ |++|++ +|+|||+++|+++||
T Consensus 82 ~gasG~r~~~~l~~~L~~~~~~~gla~~~~ggG~g~a~ller 123 (123)
T PF02803_consen 82 LGASGARLVVELAHQLRRRGGRYGLAAICAGGGQGSAVLLER 123 (123)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTSEEEEEEEETTTEEEEEEEEE
T ss_pred ccccccchhhhhHHHHHHhchhhhhHHhcccceeeEEEEEEC
Confidence 466799999999999996 999999 999999999999986
No 99
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.97 E-value=4.3e-05 Score=52.51 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=52.6
Q ss_pred EEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc-HHHHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHHHhcccc
Q psy17234 71 LFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE-SYWYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNECIFQCQ 145 (170)
Q Consensus 71 LYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d-~el~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L~~~~~~ 145 (170)
||+.++||+|.+++-+|+..+-.++++.++-.+. +++.+... ..|||+..||..+ .|-..|.+.|.+...+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l----~dS~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVL----TDSAAIIEYLEERYPG 73 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEE----ESHHHHHHHHHHHSTS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEE----eCHHHHHHHHHHHcCC
Confidence 7999999999999999998664344444444443 44555554 4799999999876 5888999999865443
No 100
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.92 E-value=7.8e-05 Score=49.72 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=44.6
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcC--Cc----HHHHHhc-CCcccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLT--PE----SYWYKLY-RYEIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId--~d----~el~~~y-~~~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
++||+.+.||.|.+++.+|+..+ ++|+.++|+ .. +++.+.. ..+||++..+|..+ .+...|.+.|
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~--~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i----~es~aI~~yl 72 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLG--IPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVL----AESNAILVYL 72 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcC--CCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEE----EcHHHHHHHh
Confidence 47999999999999999999876 455555554 32 3333333 24799999998765 3444444443
No 101
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.91 E-value=1.6e-05 Score=61.45 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=31.4
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE 104 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d 104 (170)
|+||+.++|+.|.+|+++|++.+ ++|+++||.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~g--i~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHD--IPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC--CCcEEeeccCC
Confidence 89999999999999999999954 89999999877
No 102
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.90 E-value=3.3e-05 Score=54.85 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=59.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccC----CcccEEEEEcCCcHHHHHhcCC---cccEEEe--C--CE-EEEecC-CCH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYL----DRVHLEEVYLTPESYWYKLYRY---EIPVLFL--G--GR-FVCRNR-FNA 132 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~----~e~~~eeIDId~d~el~~~y~~---~VPVl~i--d--Ge-~i~~~r-~d~ 132 (170)
.+.+.+|..+||+.|+..++.++++. +.+.|..+|+++.+++.+.++. .+|.+.+ + |+ +..... ++.
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~ 92 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTA 92 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccCH
Confidence 56789999999999999999998754 3478999999999999999884 6995543 4 43 323233 388
Q ss_pred HHHHHHHHhc
Q psy17234 133 QILMSNECIF 142 (170)
Q Consensus 133 e~L~~~L~~~ 142 (170)
+.|.+++.++
T Consensus 93 ~~l~~fi~~~ 102 (103)
T cd02982 93 ESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHhh
Confidence 8999888764
No 103
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.88 E-value=3.7e-05 Score=46.60 Aligned_cols=53 Identities=28% Similarity=0.409 Sum_probs=41.8
Q ss_pred EEEEcCCCCchHHHHHHHHhcc---CCcccEEEEEcCCcHHHHH---hcC-CcccEEEeC
Q psy17234 69 LNLFTKDPCPLCDELKLELTPY---LDRVHLEEVYLTPESYWYK---LYR-YEIPVLFLG 121 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l---~~e~~~eeIDId~d~el~~---~y~-~~VPVl~id 121 (170)
+++|..++|++|.+++..+.++ ..++.+..+|++...+..+ .++ ..+|.+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 60 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVF 60 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEE
Confidence 4689999999999999999953 4559999999999965443 444 479977663
No 104
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.83 E-value=4.6e-05 Score=53.64 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCC------cccEEEEEcCCcHHHHHhcC-CcccEEE--eCCE---E-EEecCCC
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLD------RVHLEEVYLTPESYWYKLYR-YEIPVLF--LGGR---F-VCRNRFN 131 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~------e~~~eeIDId~d~el~~~y~-~~VPVl~--idGe---~-i~~~r~d 131 (170)
....+++|..+||+.|......++++.. .+.+..+|.+.++ +...++ ..+|.++ .+|+ . ...+..+
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~ 96 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND-VPSEFVVDGFPTILFFPAGDKSNPIKYEGDRT 96 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh-hhhhccCCCCCEEEEEcCCCcCCceEccCCcC
Confidence 3567899999999999999998876532 2678889988874 555555 6899553 3554 2 2445566
Q ss_pred HHHHHHH
Q psy17234 132 AQILMSN 138 (170)
Q Consensus 132 ~e~L~~~ 138 (170)
.+.|.++
T Consensus 97 ~~~l~~f 103 (104)
T cd02995 97 LEDLIKF 103 (104)
T ss_pred HHHHHhh
Confidence 6666554
No 105
>PTZ00102 disulphide isomerase; Provisional
Probab=97.81 E-value=9.4e-05 Score=65.95 Aligned_cols=88 Identities=20% Similarity=0.155 Sum_probs=67.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhcc-------CCcccEEEEEcCCcHHHHHhcCC-cccEE--EeCCEEE-EecCCCH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPY-------LDRVHLEEVYLTPESYWYKLYRY-EIPVL--FLGGRFV-CRNRFNA 132 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l-------~~e~~~eeIDId~d~el~~~y~~-~VPVl--~idGe~i-~~~r~d~ 132 (170)
.....++.|+.+||++|.+....+.++ ..++.+-.+|.+++.++.++|+. .+|.+ +.+|..+ ..+..+.
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~ 127 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTA 127 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceEEecCCCCH
Confidence 345689999999999999888765542 12378999999999999999984 79944 4466544 4566899
Q ss_pred HHHHHHHHhccccchhccc
Q psy17234 133 QILMSNECIFQCQEVTMFN 151 (170)
Q Consensus 133 e~L~~~L~~~~~~~~~~~~ 151 (170)
+.|.+++.+.....++..+
T Consensus 128 ~~l~~~l~~~~~~~~~~i~ 146 (477)
T PTZ00102 128 DGIVSWIKKLTGPAVTEVE 146 (477)
T ss_pred HHHHHHHHHhhCCCceeec
Confidence 9999999988776665544
No 106
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.80 E-value=3.3e-05 Score=58.06 Aligned_cols=34 Identities=9% Similarity=0.299 Sum_probs=31.1
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE 104 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d 104 (170)
|++|+.++||.|.+|+++|++.+ ++|+.+|+.++
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~--i~~~~idi~~~ 34 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANG--IEYQFIDIGED 34 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcC--CceEEEecCCC
Confidence 58999999999999999999954 89999999887
No 107
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.77 E-value=0.00012 Score=62.87 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=60.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCCc--ccEEEEEcCCc-----------HHHHHhcC-CcccEEE-eC--C-E--E
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLDR--VHLEEVYLTPE-----------SYWYKLYR-YEIPVLF-LG--G-R--F 124 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~e--~~~eeIDId~d-----------~el~~~y~-~~VPVl~-id--G-e--~ 124 (170)
....|..|.++||++|......|+++..+ +.+..|++|.+ ..+.++|+ ..+|.++ ++ | + .
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~ 245 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFTP 245 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEEE
Confidence 35678999999999999999999987644 66777888763 46777888 4799554 33 3 2 3
Q ss_pred EEecCCCHHHHHHHHHhccc
Q psy17234 125 VCRNRFNAQILMSNECIFQC 144 (170)
Q Consensus 125 i~~~r~d~e~L~~~L~~~~~ 144 (170)
+..|..+.++|.+.+...+.
T Consensus 246 v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 246 IGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEeCCCCHHHHHHHHHHHhc
Confidence 45678999999999876554
No 108
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.77 E-value=0.00016 Score=54.78 Aligned_cols=34 Identities=21% Similarity=0.136 Sum_probs=30.8
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE 104 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d 104 (170)
|++|+.|.|+-|.+|+++|++.+ ++|+.+|+.++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~g--i~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAG--HEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--CCcEEeehhcC
Confidence 78999999999999999999854 88999998776
No 109
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.76 E-value=0.00022 Score=48.43 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=48.5
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc-HHHHHhcC--CcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE-SYWYKLYR--YEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d-~el~~~y~--~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
++||+.+.||+|.+++-.|+..+-+++...+|.... +++.+... ..||++..||..+ .+...|.+.|++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l----~eS~aI~~yL~~ 72 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPI----CESLIIVEYIDE 72 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEe----ehHHHHHHHHHh
Confidence 479999999999999999998764444444444333 34444332 4799998888654 677778777764
No 110
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.74 E-value=0.00013 Score=63.94 Aligned_cols=85 Identities=20% Similarity=0.141 Sum_probs=64.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccC-------CcccEEEEEcCCcHHHHHhcCC-cccEE--EeCCEE---EEecCCC
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYL-------DRVHLEEVYLTPESYWYKLYRY-EIPVL--FLGGRF---VCRNRFN 131 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~-------~e~~~eeIDId~d~el~~~y~~-~VPVl--~idGe~---i~~~r~d 131 (170)
....++.|+.+||+.|......+.++. ..+.+-.+|.+++.++.++|+. .+|.+ +.+|+. ...+..+
T Consensus 18 ~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~ 97 (462)
T TIGR01130 18 HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRD 97 (462)
T ss_pred CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCccceeEecCCCC
Confidence 346789999999999999887766421 2378999999999999999985 69944 446764 3557789
Q ss_pred HHHHHHHHHhccccchhc
Q psy17234 132 AQILMSNECIFQCQEVTM 149 (170)
Q Consensus 132 ~e~L~~~L~~~~~~~~~~ 149 (170)
.+.|.+++.......+.-
T Consensus 98 ~~~l~~~i~~~~~~~~~~ 115 (462)
T TIGR01130 98 ADGIVKYMKKQSGPAVKE 115 (462)
T ss_pred HHHHHHHHHHhcCCCcee
Confidence 999999998776644433
No 111
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.74 E-value=5.7e-05 Score=56.67 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=31.2
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE 104 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d 104 (170)
|++|+.++|+.|.+|+++|++.+ ++|+.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~g--i~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQ--IPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC--CceEEEecCCC
Confidence 89999999999999999999954 89999999776
No 112
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.69 E-value=2.9e-05 Score=60.09 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=50.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccC---CcccEEEEEcCCcHHHHHhc----CCcccEE-Ee--CCEEEEecCCCHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYL---DRVHLEEVYLTPESYWYKLY----RYEIPVL-FL--GGRFVCRNRFNAQ 133 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~---~e~~~eeIDId~d~el~~~y----~~~VPVl-~i--dGe~i~~~r~d~e 133 (170)
.....+.+++.+|||.|......|.++. ..+++..+..|+++++.+.| ...||.+ +. +|+.+..|+.-++
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wgerP~ 119 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGERPK 119 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS-H
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcCCCH
Confidence 3456899999999999999999988653 34788899888888888877 3579955 44 4688888999888
Q ss_pred HHHHHHHh
Q psy17234 134 ILMSNECI 141 (170)
Q Consensus 134 ~L~~~L~~ 141 (170)
.+++.+..
T Consensus 120 ~~~~~~~~ 127 (129)
T PF14595_consen 120 EVQELVDE 127 (129)
T ss_dssp HHH-----
T ss_pred HHhhcccc
Confidence 88877654
No 113
>PLN02287 3-ketoacyl-CoA thiolase
Probab=97.69 E-value=4.3e-06 Score=76.62 Aligned_cols=44 Identities=9% Similarity=0.109 Sum_probs=39.1
Q ss_pred eeecCCcceeeehhccccc--c--ceeEE-EeeCCCCcchhhhhccCCC
Q psy17234 14 FITSQRKPMLNLFTKDLKA--H--QKGIV-VYNTPESTMSVLLEKLPVK 57 (170)
Q Consensus 14 ~~~~~~~ri~~~L~~~L~~--g--~~G~a-iCnGgG~~~a~v~e~~~~~ 57 (170)
-+|.+|+|++++|++.|++ | +||++ +|+|||+++|+++|+++.-
T Consensus 390 p~gAsG~~~v~~l~~qL~~~~~~~~~gl~~~c~ggG~g~a~~ie~~~~~ 438 (452)
T PLN02287 390 PLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDSV 438 (452)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCeeEEEEccccCceeEEEEEecCch
Confidence 3577899999999999985 5 89999 9999999999999998754
No 114
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.68 E-value=0.00024 Score=52.00 Aligned_cols=74 Identities=12% Similarity=0.212 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccC----C-cccEEEEEcCC-cHHHHH-hcC-CcccEE--EeCCE--EEEecC--C
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYL----D-RVHLEEVYLTP-ESYWYK-LYR-YEIPVL--FLGGR--FVCRNR--F 130 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~----~-e~~~eeIDId~-d~el~~-~y~-~~VPVl--~idGe--~i~~~r--~ 130 (170)
..+.++.|..+||+.|.+.+..++++. . ++.+-.+|++. +..+.. .|+ ..+|.+ |.+|. ...+.+ -
T Consensus 21 ~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~~~ 100 (109)
T cd02993 21 NQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQR 100 (109)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCCCCCceeccCCCC
Confidence 457899999999999999999887653 2 37788999998 456654 476 479955 33442 222222 3
Q ss_pred CHHHHHHH
Q psy17234 131 NAQILMSN 138 (170)
Q Consensus 131 d~e~L~~~ 138 (170)
+.+.|.++
T Consensus 101 ~~~~l~~f 108 (109)
T cd02993 101 DVDSLLMF 108 (109)
T ss_pred CHHHHHhh
Confidence 66666554
No 115
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=97.67 E-value=0.00012 Score=53.82 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=39.8
Q ss_pred hHHHHHHHHhccCCcccEEEEEcCCcHHHH----HhcC-----CcccEEEeCCEEEEecCCCHHHHHH
Q psy17234 79 LCDELKLELTPYLDRVHLEEVYLTPESYWY----KLYR-----YEIPVLFLGGRFVCRNRFNAQILMS 137 (170)
Q Consensus 79 lCd~Ak~~L~~l~~e~~~eeIDId~d~el~----~~y~-----~~VPVl~idGe~i~~~r~d~e~L~~ 137 (170)
-|..++.+|+..+ +.|+++||+.+++.. ++-+ ..+|.||+||+++ |++ ++|.+
T Consensus 18 ~~~~v~~lL~~k~--I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~i--Gg~--ddl~~ 79 (92)
T cd03030 18 RQQEVLGFLEAKK--IEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYC--GDY--EAFFE 79 (92)
T ss_pred HHHHHHHHHHHCC--CceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEe--eCH--HHHHH
Confidence 5889999999854 899999999885433 3322 5799999999997 444 44444
No 116
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.63 E-value=9.2e-05 Score=57.41 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=30.9
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE 104 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d 104 (170)
|++|+.|+|+.|.+|+++|++.+ ++|+.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~g--i~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQ--IDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC--CCeEEEEeeCC
Confidence 89999999999999999999954 78999998776
No 117
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.62 E-value=0.00015 Score=55.59 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=49.4
Q ss_pred CCCeEEEEcC-------CCCchHHHHHHHHhccC----CcccEEEEEcCCc-------HHHHHhcC-C-cccEEE--eCC
Q psy17234 65 RKPMLNLFTK-------DPCPLCDELKLELTPYL----DRVHLEEVYLTPE-------SYWYKLYR-Y-EIPVLF--LGG 122 (170)
Q Consensus 65 ~~~~VtLYTk-------~~CplCd~Ak~~L~~l~----~e~~~eeIDId~d-------~el~~~y~-~-~VPVl~--idG 122 (170)
..+.++.|+. +|||.|..++..|+++. .++.|..||+++. .+++..|+ . .+|.++ .+|
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~ 100 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTP 100 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCC
Confidence 3466888888 99999999998887643 2378999999874 47788887 3 699553 345
Q ss_pred EEEE-ecCCCHHHHHH
Q psy17234 123 RFVC-RNRFNAQILMS 137 (170)
Q Consensus 123 e~i~-~~r~d~e~L~~ 137 (170)
..+. .-=+|.+.+..
T Consensus 101 ~~l~~~~c~~~~~~~~ 116 (119)
T cd02952 101 QRLVEDECLQADLVEM 116 (119)
T ss_pred ceecchhhcCHHHHHH
Confidence 4431 11245554443
No 118
>PTZ00062 glutaredoxin; Provisional
Probab=97.61 E-value=0.00027 Score=58.90 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=55.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCc---ccEEEEEcCCcHHHHHhcCC-ccc--EEEeCCEEE-EecCCCHHHHHHH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDR---VHLEEVYLTPESYWYKLYRY-EIP--VLFLGGRFV-CRNRFNAQILMSN 138 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e---~~~eeIDId~d~el~~~y~~-~VP--Vl~idGe~i-~~~r~d~e~L~~~ 138 (170)
...|..|+.+|||.|.....+|.++..+ +.|..||.+ |+- .|| +++.||+.+ ..-+.++.+|.++
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~ 89 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQLINSLEGCNTSTLVSF 89 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCEEEeeeeCCCHHHHHHH
Confidence 4568888899999999999999987644 677777766 763 699 445688876 3346889999999
Q ss_pred HHhccc
Q psy17234 139 ECIFQC 144 (170)
Q Consensus 139 L~~~~~ 144 (170)
+..++.
T Consensus 90 ~~~~~~ 95 (204)
T PTZ00062 90 IRGWAQ 95 (204)
T ss_pred HHHHcC
Confidence 987765
No 119
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.58 E-value=0.00028 Score=54.29 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=42.3
Q ss_pred CCeEEEEcCCCCchHHHHHHH-Hh------ccCCcccEEEEEcCCcHHHHHhc--------C-CcccEE-Ee--CCEEE
Q psy17234 66 KPMLNLFTKDPCPLCDELKLE-LT------PYLDRVHLEEVYLTPESYWYKLY--------R-YEIPVL-FL--GGRFV 125 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~-L~------~l~~e~~~eeIDId~d~el~~~y--------~-~~VPVl-~i--dGe~i 125 (170)
.+-+..|+.+||+.|+..+.. +. .+...|.+..+|+++.+++.+.| + ...|.+ |. +|+.+
T Consensus 16 KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~ 94 (124)
T cd02955 16 KPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPF 94 (124)
T ss_pred CeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEE
Confidence 456778999999999999752 22 23445888999999887665533 3 369944 44 57776
No 120
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.57 E-value=0.00013 Score=54.53 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=31.2
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE 104 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d 104 (170)
|++|+.|+|+.|.+|+++|++. +++|+.+|+.++
T Consensus 1 i~iy~~~~C~~crka~~~L~~~--~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR--GVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc--CCCeEEEecccC
Confidence 5899999999999999999995 489999999887
No 121
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.54 E-value=0.00035 Score=57.36 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=55.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCc---ccEEEEEcCCcHHHHHhcC-CcccEE--EeCCEEEE---------ecCC
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDR---VHLEEVYLTPESYWYKLYR-YEIPVL--FLGGRFVC---------RNRF 130 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e---~~~eeIDId~d~el~~~y~-~~VPVl--~idGe~i~---------~~r~ 130 (170)
..-|+-|+.+||+.|......|+.+..+ +.|..||++.. ...|+ ..+|.+ |.||+.+. ...|
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~ 179 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNT 179 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCC
Confidence 3567889999999999999999987543 67888988753 46777 469944 55987651 1278
Q ss_pred CHHHHHHHHHhc
Q psy17234 131 NAQILMSNECIF 142 (170)
Q Consensus 131 d~e~L~~~L~~~ 142 (170)
+.+.|+..|.+.
T Consensus 180 ~~~~lE~~L~~~ 191 (192)
T cd02988 180 TMEDLEWLLVQV 191 (192)
T ss_pred CHHHHHHHHHhc
Confidence 899999888753
No 122
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.54 E-value=0.00055 Score=51.56 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=30.3
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE 104 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d 104 (170)
|++|+.|.|.-|.+|+.+|++. +++|+.+|+.++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~--~i~~~~~di~~~ 34 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDK--GIEPEVVKYLKN 34 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHC--CCCeEEEeccCC
Confidence 5899999999999999999985 478889998776
No 123
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=97.54 E-value=0.00054 Score=50.45 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=50.5
Q ss_pred CCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhcC--CcccEEEeCCEEEEecCCCHHHHHHHHHhccc
Q psy17234 74 KDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYR--YEIPVLFLGGRFVCRNRFNAQILMSNECIFQC 144 (170)
Q Consensus 74 k~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y~--~~VPVl~idGe~i~~~r~d~e~L~~~L~~~~~ 144 (170)
...||+|.+++-.|...+-++++..+|....++|+.+.. ..|||+..+|..+ ++...|.+.|+...+
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i----~eS~~I~eYLde~~~ 87 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVK----TDNNKIEEFLEETLC 87 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEe----cCHHHHHHHHHHHcc
Confidence 467999999999999976445555555556577776643 3699999888765 789999999986554
No 124
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.54 E-value=0.00091 Score=45.25 Aligned_cols=68 Identities=19% Similarity=0.090 Sum_probs=47.5
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc----HHHHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE----SYWYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~el~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
++||+.+.||+|.+++-+|+..+-++++..+|.... +++.+... ..||++..+|..+ .+...|.+.|.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l----~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKL----FESRAITRYLA 74 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEE----EcHHHHHHHHh
Confidence 789999999999999999999764444444444321 33333333 4699999888765 56667776664
No 125
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.52 E-value=0.00038 Score=58.50 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=54.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC-cccEEEE--EcC--------------------------------------
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD-RVHLEEV--YLT-------------------------------------- 102 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~-e~~~eeI--DId-------------------------------------- 102 (170)
+....|++||-+.||||.++.+.|.++.. ++++..+ .+.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~ 185 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCD 185 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccccc
Confidence 45678999999999999999999988643 2433332 221
Q ss_pred ----CcHHHHHhcC-CcccEEEe-CCEEEEecCCCHHHHHHHHHhcc
Q psy17234 103 ----PESYWYKLYR-YEIPVLFL-GGRFVCRNRFNAQILMSNECIFQ 143 (170)
Q Consensus 103 ----~d~el~~~y~-~~VPVl~i-dGe~i~~~r~d~e~L~~~L~~~~ 143 (170)
++.+|.++++ ..+|.+++ ||+.+ .|..+.++|+++|++.+
T Consensus 186 ~~v~~~~~la~~lgi~gTPtiv~~~G~~~-~G~~~~~~L~~~l~~~~ 231 (232)
T PRK10877 186 VDIADHYALGVQFGVQGTPAIVLSNGTLV-PGYQGPKEMKAFLDEHQ 231 (232)
T ss_pred chHHHhHHHHHHcCCccccEEEEcCCeEe-eCCCCHHHHHHHHHHcc
Confidence 1112233334 36898777 88876 56789999999998654
No 126
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.52 E-value=0.00052 Score=54.54 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=55.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCCc--ccEEEEEcCCc------------HHHH-Hhc---C-CcccEEE-e--C
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLDR--VHLEEVYLTPE------------SYWY-KLY---R-YEIPVLF-L--G 121 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~e--~~~eeIDId~d------------~el~-~~y---~-~~VPVl~-i--d 121 (170)
.....|..|..+|||+|.+....|+++..+ +.+.-|++|++ .++. ..| + ..+|..+ + +
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~ 128 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN 128 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence 345569999999999999999999876543 66777787753 2333 334 3 3689554 4 4
Q ss_pred CEE---EEecCCCHHHHHHHHHhc
Q psy17234 122 GRF---VCRNRFNAQILMSNECIF 142 (170)
Q Consensus 122 Ge~---i~~~r~d~e~L~~~L~~~ 142 (170)
|.. ...+..+.++|++.+...
T Consensus 129 G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 129 TRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCEEEEEeecccCHHHHHHHHHHh
Confidence 432 357889999999988753
No 127
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.51 E-value=0.00047 Score=56.68 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=58.1
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCc--ccEEEEEcCCc-------------HHHHHhcC---CcccEEEe---CCEE--
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDR--VHLEEVYLTPE-------------SYWYKLYR---YEIPVLFL---GGRF-- 124 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e--~~~eeIDId~d-------------~el~~~y~---~~VPVl~i---dGe~-- 124 (170)
++++|..+|||+|.+....|+++..+ +++.-|++|++ ....+.|+ ..+|..|+ +|+.
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 48899999999999998888876443 66766776643 12455677 37996654 6754
Q ss_pred -EEecCCCHHHHHHHHHhcccc
Q psy17234 125 -VCRNRFNAQILMSNECIFQCQ 145 (170)
Q Consensus 125 -i~~~r~d~e~L~~~L~~~~~~ 145 (170)
+..|..+.++|++.+.....+
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHhh
Confidence 478999999999999877655
No 128
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.51 E-value=0.00073 Score=46.61 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=47.5
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc----HHHHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE----SYWYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~el~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
+++|+.+.|+.|.+++-.|++.+.++++..+|.... +++.+... ..||++..||..+ .+-..|...|
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l----~Es~aI~~yL 72 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNII----CDPTQIIDYL 72 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEE----EcHHHHHHHh
Confidence 579999999999999999999875566666665332 34544443 4799999888765 4555555444
No 129
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.50 E-value=0.00075 Score=52.22 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=54.0
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc----H---HHHHh-------------c----------------
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE----S---YWYKL-------------Y---------------- 111 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~---el~~~-------------y---------------- 111 (170)
.+++|+.|.|.-|.+|+++|++. +++|+.+|+-++ + +|.+. |
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~--gi~~~~~d~~~~p~t~~eL~~~l~~~g~~~lin~~~~~~r~l~~~~~~ls~~e~i 79 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS--GHDVEVQDILKEPWHADTLRPYFGNKPVGSWFNRAAPRVKSGEVNPDSIDEASAL 79 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC--CCCcEEEeccCCCcCHHHHHHHHHHcCHHHHHhccchHhhhCCCCcccCCHHHHH
Confidence 58999999999999999999985 478888887665 1 22111 1
Q ss_pred ------C--CcccEEEeCCEEEEecCCCHHHHHHHHHhccc
Q psy17234 112 ------R--YEIPVLFLGGRFVCRNRFNAQILMSNECIFQC 144 (170)
Q Consensus 112 ------~--~~VPVl~idGe~i~~~r~d~e~L~~~L~~~~~ 144 (170)
. ..=|+|+.||..+. +|+++.+++.|..-+.
T Consensus 80 ~lm~~~P~LIKRPIi~~~~~~~i--Gf~~e~~~~~l~~~~~ 118 (126)
T TIGR01616 80 ALMVSDPLLIRRPLMDLGGIRCA--GFDREPVLSWIGLQTQ 118 (126)
T ss_pred HHHHhCcCeEeCCEEEECCEEEE--cCCHHHHHHHhCCCCC
Confidence 0 13588888887654 8999999998865444
No 130
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.46 E-value=0.00053 Score=64.51 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHH-------hccCCcccEEEEEcCCc----HHHHHhcCC-cccEE-Ee--CCEEE----
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLEL-------TPYLDRVHLEEVYLTPE----SYWYKLYRY-EIPVL-FL--GGRFV---- 125 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L-------~~l~~e~~~eeIDId~d----~el~~~y~~-~VPVl-~i--dGe~i---- 125 (170)
..+.++.|+.+||+.|+..++.. +.+ .++.+..+|++++ .++.++|+. .+|.+ +. ||+.+
T Consensus 474 gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l-~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r 552 (571)
T PRK00293 474 GKPVMLDLYADWCVACKEFEKYTFSDPQVQQAL-ADTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDAR 552 (571)
T ss_pred CCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHh-cCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCccccc
Confidence 34678889999999999987653 122 3478889999875 467888884 69944 44 57653
Q ss_pred EecCCCHHHHHHHHHhc
Q psy17234 126 CRNRFNAQILMSNECIF 142 (170)
Q Consensus 126 ~~~r~d~e~L~~~L~~~ 142 (170)
..+..+++++.+.|++.
T Consensus 553 ~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 553 VTGFMDAAAFAAHLRQL 569 (571)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 34678999999999864
No 131
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.43 E-value=0.00025 Score=53.43 Aligned_cols=62 Identities=26% Similarity=0.355 Sum_probs=43.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC----cccEEEEEcCCcH-HHHHhcCC---cccE-EEe--CCEEE
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD----RVHLEEVYLTPES-YWYKLYRY---EIPV-LFL--GGRFV 125 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~----e~~~eeIDId~d~-el~~~y~~---~VPV-l~i--dGe~i 125 (170)
...+-++.|+.+||+.|+.....+.+... ...|..+|++.++ ...+.|+. .+|. +|+ +|+.+
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCc
Confidence 34567888999999999999998887422 1368888888874 34456654 3994 444 56653
No 132
>PTZ00102 disulphide isomerase; Provisional
Probab=97.40 E-value=0.00055 Score=61.07 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=62.1
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC------cccEEEEEcCCcHHHHHhcC-CcccEE--EeCCEE---EEecCCC
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD------RVHLEEVYLTPESYWYKLYR-YEIPVL--FLGGRF---VCRNRFN 131 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~------e~~~eeIDId~d~el~~~y~-~~VPVl--~idGe~---i~~~r~d 131 (170)
...+.++.|+.+||+.|...+..++++.. .+.+..+|.+.++...+.|+ ..+|.+ +.+|.. ...|..+
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~ 453 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERT 453 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCC
Confidence 44567999999999999999998876421 26788899998887777776 479954 335532 2457799
Q ss_pred HHHHHHHHHhcccc
Q psy17234 132 AQILMSNECIFQCQ 145 (170)
Q Consensus 132 ~e~L~~~L~~~~~~ 145 (170)
.+.|.++|.+...+
T Consensus 454 ~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 454 VEGFKEFVNKHATN 467 (477)
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999876654
No 133
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.30 E-value=0.0016 Score=52.56 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=49.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc-HHHHHhc-CCcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE-SYWYKLY-RYEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d-~el~~~y-~~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
..++||+.+.|++|.+++-+|+..+.++++..+|.+.. +++.+.. .-.|||+..||..+ .+-..|.+.|..
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l----~ES~AIl~YL~~ 81 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTL----YESRIIMEYLDE 81 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEe----eCHHHHHHHHHH
Confidence 35899999999999999999999764455555554333 3444443 34799999888765 455666666653
No 134
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.29 E-value=0.0004 Score=48.52 Aligned_cols=56 Identities=29% Similarity=0.403 Sum_probs=40.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhc-------cCCcccEEEEEcCCcHHHHHhcCCcccEEE
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTP-------YLDRVHLEEVYLTPESYWYKLYRYEIPVLF 119 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~-------l~~e~~~eeIDId~d~el~~~y~~~VPVl~ 119 (170)
...+-++.|+.+||+.|...++.+.. +..+|.+..+|++++....+.++..+|.++
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~~~~P~~~ 78 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDRQGYPTFF 78 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHHCSSSEEE
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCCccCCEEE
Confidence 34566889999999999999988743 334488899999887543333335599654
No 135
>KOG1389|consensus
Probab=97.28 E-value=5.8e-05 Score=67.68 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=37.3
Q ss_pred eecCCcceeeehhccccc-c---ceeEE-EeeCCCCcchhhhhccCC
Q psy17234 15 ITSQRKPMLNLFTKDLKA-H---QKGIV-VYNTPESTMSVLLEKLPV 56 (170)
Q Consensus 15 ~~~~~~ri~~~L~~~L~~-g---~~G~a-iCnGgG~~~a~v~e~~~~ 56 (170)
+|-.|+|++.||+|.+|+ | ++|++ +|+|.|++.|-++|+-..
T Consensus 380 lGatGAR~VaTlL~emKrrgkd~~~GVvSmCIGtGmGaAAvFer~~~ 426 (435)
T KOG1389|consen 380 LGATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGGG 426 (435)
T ss_pred cCCccHhHHHHHHHHHHhhccccccceEEEeecCCcchheeeecCCC
Confidence 577899999999999996 4 49999 999999999999997643
No 136
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.25 E-value=0.0014 Score=44.22 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=44.5
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc---HHHHHhcC-CcccEEEe-CCEEEEecCCCHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE---SYWYKLYR-YEIPVLFL-GGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d---~el~~~y~-~~VPVl~i-dGe~i~~~r~d~e~L~~~L 139 (170)
++||+.+.||+|.+++-.|...+.+++|+.+.++.. +++.+... ..||++.. ||..+ .+-..|.+.|
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l----~es~aI~~yL 72 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEAL----FDSRVICEYL 72 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEE----ECHHHHHhhh
Confidence 479999999999999999998322356666666532 44444433 47999985 66554 3444444443
No 137
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.24 E-value=0.0013 Score=52.85 Aligned_cols=41 Identities=32% Similarity=0.670 Sum_probs=30.1
Q ss_pred hhhhccCCCCc--ccccCCCCeEEEEcCCCCchHHHHHHHHhc
Q psy17234 49 VLLEKLPVKSN--FITSQRKPMLNLFTKDPCPLCDELKLELTP 89 (170)
Q Consensus 49 ~v~e~~~~~~~--~~~s~~~~~VtLYTk~~CplCd~Ak~~L~~ 89 (170)
..++.++.+.. ....+....|++|+-+.||+|.++.+.|.+
T Consensus 59 ~~~~~l~~~~~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 59 IDLSALPLDDAIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred hhhhhCCcccCeEEcCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 34556665433 222245788999999999999999999985
No 138
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.24 E-value=0.0021 Score=49.24 Aligned_cols=36 Identities=11% Similarity=0.187 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE 104 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d 104 (170)
+.|++|+.|.|.-|..|+++|++.+ ++|+.+|+-++
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~g--i~~~~~~y~~~ 36 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHG--IEYTFIDYLKT 36 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcC--CCcEEEEeecC
Confidence 3599999999999999999999965 78888887765
No 139
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.24 E-value=0.002 Score=51.60 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=56.2
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC-cccEEEEEcCCcHH----HHH-------------------hcC-CcccE-
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD-RVHLEEVYLTPESY----WYK-------------------LYR-YEIPV- 117 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~-e~~~eeIDId~d~e----l~~-------------------~y~-~~VPV- 117 (170)
+..+.|..|+.+|||.|.+....|.++.. ++++.-|+.+++++ +.+ .|+ ..+|.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t 146 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPET 146 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeE
Confidence 34567888999999999999888887753 37788888776632 222 233 34883
Q ss_pred EEe--CCEEE--EecCCCHHHHHHHHHhcccc
Q psy17234 118 LFL--GGRFV--CRNRFNAQILMSNECIFQCQ 145 (170)
Q Consensus 118 l~i--dGe~i--~~~r~d~e~L~~~L~~~~~~ 145 (170)
+++ +|+.. ..+..+++.|++.+.....+
T Consensus 147 ~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 147 FLIDGNGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred EEECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 344 46543 55678999998888765533
No 140
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.23 E-value=0.0014 Score=54.75 Aligned_cols=74 Identities=23% Similarity=0.270 Sum_probs=58.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCc--ccEEEEEcCC-----------cHHHHHhcCC-cccEEEe---CC---EEE
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDR--VHLEEVYLTP-----------ESYWYKLYRY-EIPVLFL---GG---RFV 125 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e--~~~eeIDId~-----------d~el~~~y~~-~VPVl~i---dG---e~i 125 (170)
..-+.+|.+++|++|......|+.+..+ +++..|++|. |..+.++++- .+|.+|. ++ ..+
T Consensus 121 ~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv 200 (215)
T PF13728_consen 121 KYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYPV 200 (215)
T ss_pred CeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEEE
Confidence 3459999999999999999999987655 7788888873 4677778774 6997764 33 345
Q ss_pred EecCCCHHHHHHHH
Q psy17234 126 CRNRFNAQILMSNE 139 (170)
Q Consensus 126 ~~~r~d~e~L~~~L 139 (170)
..|-.+.++|.+.+
T Consensus 201 ~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 201 SQGFMSLDELEDRI 214 (215)
T ss_pred eeecCCHHHHHHhh
Confidence 88899999998765
No 141
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.22 E-value=0.0021 Score=43.37 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=41.1
Q ss_pred CCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhcCCcccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 76 PCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYRYEIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 76 ~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y~~~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
+||+|.+++.+|+..+ ++|+.++++... ......||++..||+.+ .+-..|.+.|+
T Consensus 15 ~sp~~~~v~~~L~~~~--i~~~~~~~~~~~---~~p~g~vP~l~~~g~~l----~es~~I~~yL~ 70 (72)
T cd03054 15 LSPECLKVETYLRMAG--IPYEVVFSSNPW---RSPTGKLPFLELNGEKI----ADSEKIIEYLK 70 (72)
T ss_pred CCHHHHHHHHHHHhCC--CceEEEecCCcc---cCCCcccCEEEECCEEE----cCHHHHHHHHh
Confidence 8999999999999865 677777776542 11234799999999875 44566666664
No 142
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.18 E-value=0.0038 Score=49.34 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=53.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCCc-ccEEEEEcCCc-----------------------HHHHHhcC-Cccc-E
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLDR-VHLEEVYLTPE-----------------------SYWYKLYR-YEIP-V 117 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~e-~~~eeIDId~d-----------------------~el~~~y~-~~VP-V 117 (170)
+..+.+..|+.+|||.|......|+++... +.+..|+.+++ .++.+.|+ ..+| .
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~ 141 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPET 141 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeE
Confidence 345678889999999999998888776432 66666666543 12223344 3589 4
Q ss_pred EEe--CCEEE--EecCCCHHHHHHHHHhc
Q psy17234 118 LFL--GGRFV--CRNRFNAQILMSNECIF 142 (170)
Q Consensus 118 l~i--dGe~i--~~~r~d~e~L~~~L~~~ 142 (170)
+++ ||+.+ ..+..+.++|++.|...
T Consensus 142 ~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 142 FLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred EEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 555 47654 34578999999888754
No 143
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.10 E-value=0.0043 Score=41.27 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=45.2
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc----HHHHHhc-CCcccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE----SYWYKLY-RYEIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~el~~~y-~~~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
++||+.+.|+.|.+++.+|+..+.+++...+|.... +++.+.. ...||++..+|..+ .+...|.+.|
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l----~es~aI~~yL 72 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVL----TQSLAIIEYL 72 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEE----EcHHHHHHHh
Confidence 379999999999999999999765555555665332 3444433 24799999888765 3444444443
No 144
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.09 E-value=0.0033 Score=49.37 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=59.5
Q ss_pred CeEEEEcCCC--CchHHHHHHHHhccCCc-----ccEEEEEcCCcHHHHHhcC-Cccc--EEEeCCEEE--EecCCCHHH
Q psy17234 67 PMLNLFTKDP--CPLCDELKLELTPYLDR-----VHLEEVYLTPESYWYKLYR-YEIP--VLFLGGRFV--CRNRFNAQI 134 (170)
Q Consensus 67 ~~VtLYTk~~--CplCd~Ak~~L~~l~~e-----~~~eeIDId~d~el~~~y~-~~VP--Vl~idGe~i--~~~r~d~e~ 134 (170)
..|.+++.+. +|-+..+--.|+++..+ +.+-.+|+|+++++..+|+ ..|| ++|.||+.+ ..+..+.++
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~ 115 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAE 115 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHH
Confidence 3566666553 67776666666654322 6799999999999999999 5799 556799887 446679999
Q ss_pred HHHHHHhccccc
Q psy17234 135 LMSNECIFQCQE 146 (170)
Q Consensus 135 L~~~L~~~~~~~ 146 (170)
+.++|.++.++.
T Consensus 116 l~~~I~~~L~~~ 127 (132)
T PRK11509 116 LINLMRGLVEPQ 127 (132)
T ss_pred HHHHHHHHhcCc
Confidence 999998766553
No 145
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.09 E-value=0.0029 Score=46.15 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=50.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc-----------------------HHHHHhcC-CcccEEE
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE-----------------------SYWYKLYR-YEIPVLF 119 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d-----------------------~el~~~y~-~~VPVl~ 119 (170)
+..+.+..|..+||+.|......|.++..++.+..|..+.+ .++.+.|+ ..+|.++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~ 98 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIV 98 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEE
Confidence 34567888999999999999988887765565555554432 34555666 3688543
Q ss_pred e---CC-EEEEecCCCHHHHHHHH
Q psy17234 120 L---GG-RFVCRNRFNAQILMSNE 139 (170)
Q Consensus 120 i---dG-e~i~~~r~d~e~L~~~L 139 (170)
+ +| .....+..+++.|+++.
T Consensus 99 vid~~gi~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 99 IVDPGGIVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred EEcCCCeEEEEeccCCHHHHHhhc
Confidence 3 34 11255678888887653
No 146
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00093 Score=50.72 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=48.7
Q ss_pred CeEEEEcC-----CCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHh---cC--CcccEEEeCCEEE
Q psy17234 67 PMLNLFTK-----DPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKL---YR--YEIPVLFLGGRFV 125 (170)
Q Consensus 67 ~~VtLYTk-----~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~---y~--~~VPVl~idGe~i 125 (170)
..|+||-| |.|++=.+|.++|..++. .+|..+||-+|+++++. |. -++|++++||+++
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfv 82 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSACGV-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFV 82 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHcCC-cceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEe
Confidence 44777744 679999999999999764 79999999999988755 53 4899999999998
No 147
>PLN02309 5'-adenylylsulfate reductase
Probab=97.04 E-value=0.0025 Score=58.98 Aligned_cols=78 Identities=14% Similarity=0.261 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCC-----cccEEEEEcC-CcHHHHH-hcC-CcccEE--EeCCE--EEEe--cCC
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLD-----RVHLEEVYLT-PESYWYK-LYR-YEIPVL--FLGGR--FVCR--NRF 130 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~-----e~~~eeIDId-~d~el~~-~y~-~~VPVl--~idGe--~i~~--~r~ 130 (170)
....++.|..|||+.|...+..++++.. ++.|-.+|++ .+.++.. +|+ ..+|.+ |.+|. .+.+ ++-
T Consensus 365 ~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R 444 (457)
T PLN02309 365 KEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKR 444 (457)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCc
Confidence 3457999999999999999988876532 3788999999 6566664 577 479944 33553 3444 357
Q ss_pred CHHHHHHHHHhc
Q psy17234 131 NAQILMSNECIF 142 (170)
Q Consensus 131 d~e~L~~~L~~~ 142 (170)
+.+.|.+++.+.
T Consensus 445 ~~~~L~~fv~~~ 456 (457)
T PLN02309 445 DVDSLLSFVNSL 456 (457)
T ss_pred CHHHHHHHHHHh
Confidence 889999998865
No 148
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.04 E-value=0.0036 Score=48.28 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=52.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC-----cccEEEEEcCCc----------------------HHHHHhcCC-cc
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD-----RVHLEEVYLTPE----------------------SYWYKLYRY-EI 115 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~-----e~~~eeIDId~d----------------------~el~~~y~~-~V 115 (170)
...+.+..|+.+||+.|......|.++.. ++.+..++.+.+ .++.+.|+. .+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 34567888889999999987766665432 256777776654 234455653 57
Q ss_pred cEE-Ee--CCEEE--EecCCCHHHHHHHHHhc
Q psy17234 116 PVL-FL--GGRFV--CRNRFNAQILMSNECIF 142 (170)
Q Consensus 116 PVl-~i--dGe~i--~~~r~d~e~L~~~L~~~ 142 (170)
|.+ ++ +|+.+ ..+..+.+++++.|++.
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 843 44 47654 45678999999988753
No 149
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.03 E-value=0.0026 Score=44.27 Aligned_cols=64 Identities=14% Similarity=0.033 Sum_probs=44.1
Q ss_pred CCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHH--hc--CCcccEEEeC-CEEEEecCCCHHHHHHHHHh
Q psy17234 74 KDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYK--LY--RYEIPVLFLG-GRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 74 k~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~--~y--~~~VPVl~id-Ge~i~~~r~d~e~L~~~L~~ 141 (170)
.++||+|.+++-+|...+.++++..+|....+.... .. ...||++..| |..+ .+...|.+.|++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~l----~eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVDGSGEVI----GDSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCceeCeEEECCCCEE----eCHHHHHHHHHH
Confidence 378999999999999976555555566544332222 11 2479999887 6654 678888888764
No 150
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.03 E-value=0.0025 Score=59.10 Aligned_cols=78 Identities=13% Similarity=0.269 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCCc-----ccEEEEEcCCcH-HHH-HhcCC-cccEE--EeCCE--EEEe--cCC
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLDR-----VHLEEVYLTPES-YWY-KLYRY-EIPVL--FLGGR--FVCR--NRF 130 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~e-----~~~eeIDId~d~-el~-~~y~~-~VPVl--~idGe--~i~~--~r~ 130 (170)
..+.|+.|..|||+.|......++++..+ +.+..+|+|.++ ++. ++|+. .+|.+ |.+|. .+.+ +.-
T Consensus 371 ~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R 450 (463)
T TIGR00424 371 KEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKR 450 (463)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEECCCCCceeCCCCCC
Confidence 34578999999999999999988865432 568889999873 444 57874 69944 44663 2333 358
Q ss_pred CHHHHHHHHHhc
Q psy17234 131 NAQILMSNECIF 142 (170)
Q Consensus 131 d~e~L~~~L~~~ 142 (170)
+.+.|.+++++.
T Consensus 451 ~~e~L~~Fv~~~ 462 (463)
T TIGR00424 451 DVDSLMSFVNLL 462 (463)
T ss_pred CHHHHHHHHHhh
Confidence 889998888764
No 151
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=96.99 E-value=0.0088 Score=41.10 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=49.3
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc----HHHHHhcC-CcccEEEeC---CEEEEecCCCHHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE----SYWYKLYR-YEIPVLFLG---GRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~el~~~y~-~~VPVl~id---Ge~i~~~r~d~e~L~~~L~ 140 (170)
++||+.+. |.|.+++-+|+..+-+++.+.+|.... +++.+... ..||++..+ |..+ .+...|.+.|.
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l----~eS~aI~~yL~ 76 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTV----FESGAILLYLA 76 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEE----EcHHHHHHHHH
Confidence 78999987 999999999999775566666665432 34444332 479999887 6554 56777777776
Q ss_pred hc
Q psy17234 141 IF 142 (170)
Q Consensus 141 ~~ 142 (170)
+-
T Consensus 77 ~~ 78 (81)
T cd03048 77 EK 78 (81)
T ss_pred HH
Confidence 43
No 152
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=96.98 E-value=0.0078 Score=40.89 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=47.7
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc----HHHHHhc-CCcccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE----SYWYKLY-RYEIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~el~~~y-~~~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
++||+.+.++.|.++.-.|+..+-+++...+|.... +++.+.. ...||++..+|..+ .+...|.+.|.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l----~eS~aI~~Yl~ 73 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTL----AESVAILRYLA 73 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEE----EcHHHHHHHHH
Confidence 479999999999999999998775555556665443 2333332 24799998888664 45666666664
No 153
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0016 Score=47.32 Aligned_cols=55 Identities=29% Similarity=0.436 Sum_probs=42.5
Q ss_pred EEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc-H---HH------------HHhcCC-cccEEEe-CCEEEE
Q psy17234 70 NLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE-S---YW------------YKLYRY-EIPVLFL-GGRFVC 126 (170)
Q Consensus 70 tLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d-~---el------------~~~y~~-~VPVl~i-dGe~i~ 126 (170)
++|+...||.|..+++.|+++. +.|+.|||.+. + +. .+..+| .||.+.. ||+.+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~--v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN--VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC--CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 8999999999999999999976 89999999987 1 11 112344 7998776 566654
No 154
>PRK10387 glutaredoxin 2; Provisional
Probab=96.92 E-value=0.0044 Score=49.25 Aligned_cols=68 Identities=15% Similarity=0.313 Sum_probs=46.9
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcH-HH-HHhcC-CcccEEE-eCCEEEEecCCCHHHHHHHHHhc
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPES-YW-YKLYR-YEIPVLF-LGGRFVCRNRFNAQILMSNECIF 142 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~-el-~~~y~-~~VPVl~-idGe~i~~~r~d~e~L~~~L~~~ 142 (170)
++||+.+.||+|.+++-.|+..+ ++|+.++++..+ .. .+... ..||||. .||..+ .+...|.+.|++.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~g--i~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~~g~~l----~eS~aI~~yL~~~ 72 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKN--IPVELIVLANDDEATPIRMIGQKQVPILQKDDGSYM----PESLDIVHYIDEL 72 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcC--CCeEEEEcCCCchhhHHHhcCCcccceEEecCCeEe----cCHHHHHHHHHHh
Confidence 47999999999999999999976 566667665432 21 22222 4799995 566654 5666666666543
No 155
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=96.92 E-value=0.0065 Score=41.43 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=46.4
Q ss_pred EEEcCCCCchHHHHHHHHhccCCcccEEEEEcCC---cHHHHHhcC-CcccEEEeC-CEEEEecCCCHHHHHHHHH
Q psy17234 70 NLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTP---ESYWYKLYR-YEIPVLFLG-GRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 70 tLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~---d~el~~~y~-~~VPVl~id-Ge~i~~~r~d~e~L~~~L~ 140 (170)
+||+.+.|+.|.+++-+|+..+.++++..+|... .+++.+..- ..||++..+ |..+ .+...|.+.|.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l----~es~aI~~yL~ 73 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCL----FESNAIAYYVA 73 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEE----eeHHHHHHHHh
Confidence 6899999999999999999876545555556542 244444433 479999975 7654 45566666664
No 156
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.88 E-value=0.0093 Score=43.85 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCCCchHHHHHH-HHhc------cCCcccEEEEEcCCc--HHHHHhcC-CcccEE-Ee---CCEEE--Eec
Q psy17234 65 RKPMLNLFTKDPCPLCDELKL-ELTP------YLDRVHLEEVYLTPE--SYWYKLYR-YEIPVL-FL---GGRFV--CRN 128 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~-~L~~------l~~e~~~eeIDId~d--~el~~~y~-~~VPVl-~i---dGe~i--~~~ 128 (170)
..+-++.++.+||++|+...+ .|.. +...+-+..+|+++. .++.+.|+ ...|.+ ++ +|+.+ ..|
T Consensus 17 ~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G 96 (114)
T cd02958 17 KKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSG 96 (114)
T ss_pred CceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcC
Confidence 345688889999999999866 3432 223366777888764 56777787 469944 44 46554 668
Q ss_pred CCCHHHHHHHHHhc
Q psy17234 129 RFNAQILMSNECIF 142 (170)
Q Consensus 129 r~d~e~L~~~L~~~ 142 (170)
..+++++.+.|...
T Consensus 97 ~~~~~~f~~~L~~~ 110 (114)
T cd02958 97 NITPEDLLSQLIEF 110 (114)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999754
No 157
>PRK15113 glutathione S-transferase; Provisional
Probab=96.86 E-value=0.01 Score=47.94 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=43.4
Q ss_pred CCeEEEEcCC--CCchHHHHHHHHhccCCcccEEEEEcCCc----HHHHHhcC-CcccEEEeCCEEE
Q psy17234 66 KPMLNLFTKD--PCPLCDELKLELTPYLDRVHLEEVYLTPE----SYWYKLYR-YEIPVLFLGGRFV 125 (170)
Q Consensus 66 ~~~VtLYTk~--~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~el~~~y~-~~VPVl~idGe~i 125 (170)
.+.++||+.+ .|++|.++.-+|.+.+.++++..+|.... +++.+..- -.|||+..||..+
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l 69 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFEL 69 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEE
Confidence 3558999976 69999999999999775556666665433 44444332 4799999998765
No 158
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.85 E-value=0.0024 Score=47.56 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=42.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCC-------cccEEEEEcCC--cHHHHHhcCC-cccEEE--eCCE
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLD-------RVHLEEVYLTP--ESYWYKLYRY-EIPVLF--LGGR 123 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~-------e~~~eeIDId~--d~el~~~y~~-~VPVl~--idGe 123 (170)
.+.+..|+.+||+.|......++++.. .+.+-.+|.+. ++++.++|+. .+|.++ -+|.
T Consensus 20 ~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 20 SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFS 89 (114)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCC
Confidence 577999999999999999998876533 15667777654 4678888874 699543 3554
No 159
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=96.83 E-value=0.0072 Score=41.31 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=45.8
Q ss_pred EEEEcCC-------CCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhc-CCcccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 69 LNLFTKD-------PCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLY-RYEIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 69 VtLYTk~-------~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y-~~~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
++||..+ +||+|.+++.+|...+ ++|+.++++.. +.- ..+|||+..||+.+ .+...|.+.|.
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~g--i~~~~~~~~~~----~~~p~g~vPvl~~~g~~l----~eS~~I~~yL~ 71 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAG--IPYENKFGGLA----KRSPKGKLPFIELNGEKI----ADSELIIDHLE 71 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCC--CCcEEeecCcc----cCCCCCCCCEEEECCEEE----cCHHHHHHHHH
Confidence 6788888 5699999999999866 55555555432 122 24699999998765 57788888886
Q ss_pred h
Q psy17234 141 I 141 (170)
Q Consensus 141 ~ 141 (170)
+
T Consensus 72 ~ 72 (75)
T cd03080 72 E 72 (75)
T ss_pred H
Confidence 4
No 160
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=96.81 E-value=0.0042 Score=45.83 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=28.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCCc--ccEEEEEcC
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLDR--VHLEEVYLT 102 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~e--~~~eeIDId 102 (170)
+..+.|..|..+|||.|......|+++..+ +.+..|+++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~ 64 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYK 64 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECC
Confidence 345678889999999999999988876433 455555543
No 161
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=96.81 E-value=0.006 Score=41.59 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=44.9
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc---HHHHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE---SYWYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d---~el~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
++||..+.|+.|..++-.|...+ ++|+.+.++.+ +++.+... .+||++..||..+ .+...|...|.
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~--i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l----~es~aI~~yL~ 71 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQG--ISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTL----VQSNAILRHLG 71 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcC--CCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEE----EcHHHHHHHHh
Confidence 68999999999999999999876 45555555432 22222222 4699999888765 45666666554
No 162
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.75 E-value=0.01 Score=45.54 Aligned_cols=78 Identities=19% Similarity=0.105 Sum_probs=59.0
Q ss_pred CCCCeEEEEcC--CCCc---hHHHHHHHHhccCCcccEEEEEcC-----CcHHHHHhcCC---cccEE--EeCCE---EE
Q psy17234 64 QRKPMLNLFTK--DPCP---LCDELKLELTPYLDRVHLEEVYLT-----PESYWYKLYRY---EIPVL--FLGGR---FV 125 (170)
Q Consensus 64 ~~~~~VtLYTk--~~Cp---lCd~Ak~~L~~l~~e~~~eeIDId-----~d~el~~~y~~---~VPVl--~idGe---~i 125 (170)
.....++-|.. |||+ .|+.+.........++.+-+||++ ++.+|.++|+- ..|.| |.+|+ ..
T Consensus 17 ~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~ 96 (116)
T cd03007 17 KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFENPV 96 (116)
T ss_pred cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCc
Confidence 33557899999 9999 999998888765556889999995 45789999985 59965 45774 22
Q ss_pred -EecC-CCHHHHHHHHHh
Q psy17234 126 -CRNR-FNAQILMSNECI 141 (170)
Q Consensus 126 -~~~r-~d~e~L~~~L~~ 141 (170)
..+. .+.+.|.+++.+
T Consensus 97 ~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 97 PYSGADVTVDALQRFLKG 114 (116)
T ss_pred cCCCCcccHHHHHHHHHh
Confidence 4454 788888888764
No 163
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=96.74 E-value=0.015 Score=39.46 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=46.3
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCC----cHHHHHhcC-CcccEEEeC-CEEEEecCCCHHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTP----ESYWYKLYR-YEIPVLFLG-GRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~----d~el~~~y~-~~VPVl~id-Ge~i~~~r~d~e~L~~~L~ 140 (170)
++||+.+.|+ |.+++-+|...+.++++..+|..+ .+++.+... ..||++..+ |..+ ++...|.+.|.
T Consensus 1 ~~Ly~~~~~~-~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l----~eS~aI~~yL~ 73 (77)
T cd03057 1 MKLYYSPGAC-SLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVL----TESAAILQYLA 73 (77)
T ss_pred CEEEeCCCCc-hHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEE----EcHHHHHHHHH
Confidence 3689888774 778888898876556666677654 245554433 479999887 6654 56677777765
No 164
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=96.70 E-value=0.0088 Score=48.53 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=46.4
Q ss_pred EEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcH--HHHHhc-CCcccEEE-eCCEEEEecCCCHHHHHHHHHh
Q psy17234 70 NLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPES--YWYKLY-RYEIPVLF-LGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 70 tLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~--el~~~y-~~~VPVl~-idGe~i~~~r~d~e~L~~~L~~ 141 (170)
+||+.+.||+|.+++-.|...+ +.|+.++++.++ ...+.. ...||++. .||..+ .+...|.+.|..
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~g--l~~e~~~~~~~~~~~~~~~np~g~vP~l~~~~g~~l----~es~~I~~yL~~ 70 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKN--IPVEKHVLLNDDEETPIRMIGAKQVPILQKDDGRAM----PESLDIVAYFDK 70 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcC--CCeEEEECCCCcchhHHHhcCCCCcceEEeeCCeEe----ccHHHHHHHHHH
Confidence 5899999999999999999865 677777776542 222333 35799997 677654 455555556553
No 165
>KOG0908|consensus
Probab=96.66 E-value=0.0052 Score=53.61 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=64.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCCc---ccEEEEEcCCcHHHHHhcCC-ccc--EEEeCCEEE-EecCCCHHHHHHHH
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLDR---VHLEEVYLTPESYWYKLYRY-EIP--VLFLGGRFV-CRNRFNAQILMSNE 139 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~e---~~~eeIDId~d~el~~~y~~-~VP--Vl~idGe~i-~~~r~d~e~L~~~L 139 (170)
.-++-||.+||+.|.+.......+... ..|-+||+|+-...+..++- -.| +.|.||+.+ .+-+.|+..|++.+
T Consensus 23 ~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~kid~~qGAd~~gLe~kv 102 (288)
T KOG0908|consen 23 LVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVKIDQIQGADASGLEEKV 102 (288)
T ss_pred EEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEEecCeEeeeecCCCHHHHHHHH
Confidence 458889999999999999998876543 68999999999888888885 578 567799776 56789999999998
Q ss_pred Hhccc
Q psy17234 140 CIFQC 144 (170)
Q Consensus 140 ~~~~~ 144 (170)
+..+.
T Consensus 103 ~~~~s 107 (288)
T KOG0908|consen 103 AKYAS 107 (288)
T ss_pred HHHhc
Confidence 75543
No 166
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.64 E-value=0.0071 Score=53.12 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccC----C---cccEEEEEcCCcHHHHHhcC-CcccEEE--eCCEE----EEecC
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYL----D---RVHLEEVYLTPESYWYKLYR-YEIPVLF--LGGRF----VCRNR 129 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~----~---e~~~eeIDId~d~el~~~y~-~~VPVl~--idGe~----i~~~r 129 (170)
.....++.|..+||+.|......++++. . .+.+..+|++.++-.. |+ ..+|.++ .+|.. ...+.
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~--~~i~~~Pt~~~~~~~~~~~~~~~~g~ 440 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPP--FEVEGFPTIKFVPAGKKSEPVPYDGD 440 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCC--CCccccCEEEEEeCCCCcCceEecCc
Confidence 4456789999999999999988887642 2 4678899998774322 55 4789543 35532 24567
Q ss_pred CCHHHHHHHHHhcc
Q psy17234 130 FNAQILMSNECIFQ 143 (170)
Q Consensus 130 ~d~e~L~~~L~~~~ 143 (170)
.+.+.|.++|....
T Consensus 441 ~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 441 RTLEDFSKFIAKHA 454 (462)
T ss_pred CCHHHHHHHHHhcC
Confidence 89999999998655
No 167
>PHA03075 glutaredoxin-like protein; Provisional
Probab=96.64 E-value=0.0028 Score=49.32 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=33.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCC
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTP 103 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~ 103 (170)
...+.||+||.|+.|+.+-+.|+++..++++-.|||-+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS 39 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNILS 39 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee
Confidence 45799999999999999999999998888888888754
No 168
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=96.58 E-value=0.011 Score=39.78 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=43.5
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcH--H--HHHhc-CCcccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPES--Y--WYKLY-RYEIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~--e--l~~~y-~~~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
++||..+.|+.|..++-.|+..+ ++|+.++++... . +.+.. ...||++..+|..+ .+...|.+.|
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~g--i~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l----~es~aI~~yL 70 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAG--VEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKL----TQSNAILRYL 70 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCC--CCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEE----EecHHHHHHh
Confidence 47899999999999999999976 556665555331 1 11111 24799999888665 4455555554
No 169
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.011 Score=50.64 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=62.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHH-HHhcCCcccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYW-YKLYRYEIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el-~~~y~~~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
.+.|.+|+..+|--|-..-+.|+.-+--=.++.+|-..++-+ .++|-..||-+|+||+-+.....|++.++..+.
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~~ 85 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFEKGVISVPSVFIDGELVYADPVDPEEIESILS 85 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhhcceeecceEEEcCeEEEcCCCCHHHHHHHHc
Confidence 578999999999999999999997221015677787777654 455778999999999999999999999999986
No 170
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.016 Score=47.57 Aligned_cols=81 Identities=12% Similarity=0.249 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhcc-------CCcccEEEEEcCCc----------------HHHHHhcC-CcccEE-E
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPY-------LDRVHLEEVYLTPE----------------SYWYKLYR-YEIPVL-F 119 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l-------~~e~~~eeIDId~d----------------~el~~~y~-~~VPVl-~ 119 (170)
....+.+|.+++|++|++.|..+... .+.|.+.++||... .||++.|+ +..|-+ |
T Consensus 42 ~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvF 121 (182)
T COG2143 42 DKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVF 121 (182)
T ss_pred CcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEE
Confidence 34569999999999999999887642 22277788887654 37888888 568944 4
Q ss_pred eC--CEEE--EecCCCHHHHHHHHHhcccc
Q psy17234 120 LG--GRFV--CRNRFNAQILMSNECIFQCQ 145 (170)
Q Consensus 120 id--Ge~i--~~~r~d~e~L~~~L~~~~~~ 145 (170)
.| |+-+ .-|..+++++...|.=++.-
T Consensus 122 fdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 122 FDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred EcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 55 4444 45779999999888755443
No 171
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.51 E-value=0.0085 Score=56.39 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=54.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC-----cccEEE----------------------------EEcCCcHHHHHh
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD-----RVHLEE----------------------------VYLTPESYWYKL 110 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~-----e~~~ee----------------------------IDId~d~el~~~ 110 (170)
+..+.|+.|+.+||+.|......|+++.. ++.+.. +++|.+.++.+.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 44567999999999999999888876532 233332 333444566667
Q ss_pred cC-CcccEE-Ee--CCEEE--EecCCCHHHHHHHHH
Q psy17234 111 YR-YEIPVL-FL--GGRFV--CRNRFNAQILMSNEC 140 (170)
Q Consensus 111 y~-~~VPVl-~i--dGe~i--~~~r~d~e~L~~~L~ 140 (170)
|+ ..+|.+ ++ +|+.+ ..+..+.++|++.|+
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 76 469955 44 57665 678899999999988
No 172
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.47 E-value=0.0049 Score=46.17 Aligned_cols=34 Identities=12% Similarity=0.109 Sum_probs=30.4
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE 104 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d 104 (170)
|++|+.|.|.-|.+|+++|++.+ ++|+.+|+-++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~--i~~~~~di~~~ 34 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAG--IEPEIVEYLKT 34 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCC--CCeEEEecccC
Confidence 58999999999999999999854 78999998776
No 173
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.43 E-value=0.0057 Score=41.04 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=41.5
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCc----ccEEEEEcC-CcHHHHHhcC---CcccEEE--eCCEE
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDR----VHLEEVYLT-PESYWYKLYR---YEIPVLF--LGGRF 124 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e----~~~eeIDId-~d~el~~~y~---~~VPVl~--idGe~ 124 (170)
.+.-|.++|||+|..+...|.++..+ +.+..+|+. .+.+....|+ ..+|.+. .|+..
T Consensus 35 ~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 35 VLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred EEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 34444599999999999998876533 578889997 6777777776 5788554 46554
No 174
>PRK10026 arsenate reductase; Provisional
Probab=96.42 E-value=0.0066 Score=48.07 Aligned_cols=36 Identities=3% Similarity=0.005 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE 104 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d 104 (170)
..+++|+.|.|.-|.+|+++|++.+ ++|+.+|+-++
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~g--i~~~~~d~~~~ 37 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSG--TEPTIIHYLET 37 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCC--CCcEEEeeeCC
Confidence 4699999999999999999999854 78888887665
No 175
>PLN02473 glutathione S-transferase
Probab=96.26 E-value=0.034 Score=44.47 Aligned_cols=58 Identities=9% Similarity=-0.035 Sum_probs=43.7
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCC----cHHHHHhc-CCcccEEEeCCEEE
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTP----ESYWYKLY-RYEIPVLFLGGRFV 125 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~----d~el~~~y-~~~VPVl~idGe~i 125 (170)
.++||+.+.++.|.+++-.|++.+-++++..+|..+ .+++.+.. .-.||++..||..+
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l 64 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKL 64 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEE
Confidence 579999999999999999999876555666666653 25555543 24799999888655
No 176
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=96.25 E-value=0.038 Score=37.22 Aligned_cols=67 Identities=9% Similarity=0.022 Sum_probs=45.8
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc----HHHHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE----SYWYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~el~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
++||+.+..+.|.+++-.|+..+-+++++.+|.... +++.+... ..||++..||..+ .+...|.+.|
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l----~eS~aI~~YL 72 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVL----WESNAILRYL 72 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEE----ECHHHHHHHh
Confidence 379999999999999999999765555555554322 44544433 4799998888765 3444444443
No 177
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=96.24 E-value=0.024 Score=42.29 Aligned_cols=71 Identities=8% Similarity=0.102 Sum_probs=45.5
Q ss_pred EEEcCCC-CchHH------HHHHHHhcc-----C-CcccEEEEEcCCcH------HHHHhcC---CcccEEEeCCEEEEe
Q psy17234 70 NLFTKDP-CPLCD------ELKLELTPY-----L-DRVHLEEVYLTPES------YWYKLYR---YEIPVLFLGGRFVCR 127 (170)
Q Consensus 70 tLYTk~~-CplCd------~Ak~~L~~l-----~-~e~~~eeIDId~d~------el~~~y~---~~VPVl~idGe~i~~ 127 (170)
++|+..- |.-|. ..-+||+.. . ..|.|+.|||..++ ++.++-. +==|+|++||+.+..
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 4677774 88883 455666642 2 23999999999983 3444432 236999999999999
Q ss_pred cCCCHHHHHHHHH
Q psy17234 128 NRFNAQILMSNEC 140 (170)
Q Consensus 128 ~r~d~e~L~~~L~ 140 (170)
|.+....+.+.++
T Consensus 81 Gnp~LK~I~~~~e 93 (93)
T PF07315_consen 81 GNPQLKDIYEEME 93 (93)
T ss_dssp SS--HHHHHHHHH
T ss_pred CCccHHHHHHhhC
Confidence 9998888877653
No 178
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.19 E-value=0.044 Score=36.65 Aligned_cols=67 Identities=12% Similarity=0.027 Sum_probs=45.6
Q ss_pred EEEcCCCCchHHHHHHHHhccCCcccEEEEEcCC----cHHHHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 70 NLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTP----ESYWYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 70 tLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~----d~el~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
+||+.+. +.|.+++-+|+..+-++++..+|... .+++.+... ..||++..||..+ .+...|.+.|.+
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l----~es~aI~~yL~~ 73 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVL----TESAAIILYLAE 73 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEE----EcHHHHHHHHHH
Confidence 6788776 67889999998866445555555532 144544443 4799999888765 567777777764
No 179
>PRK10853 putative reductase; Provisional
Probab=96.19 E-value=0.0097 Score=45.38 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=30.6
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE 104 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d 104 (170)
+++|+.|.|.-|.+|+++|++. +++|+.+|+-++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~--~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ--GIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc--CCCcEEeehccC
Confidence 8999999999999999999985 488999998765
No 180
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.18 E-value=0.038 Score=40.96 Aligned_cols=40 Identities=15% Similarity=0.303 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhcc----C---CcccEEEEEcCCc
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPY----L---DRVHLEEVYLTPE 104 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l----~---~e~~~eeIDId~d 104 (170)
..+.+..|+.+||+.|......|.++ . .++++.-+++|.+
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~ 64 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRD 64 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCC
Confidence 34568888899999999887777643 1 1366777777765
No 181
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=96.18 E-value=0.011 Score=40.83 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccC-----CcccEEEEEcCCc
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYL-----DRVHLEEVYLTPE 104 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~-----~e~~~eeIDId~d 104 (170)
..+.+.+|..+||+.|......|.++. .++.+..|+++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 456789999999999998877777543 2368889999885
No 182
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.13 E-value=0.0089 Score=46.78 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhc-------cCCcccEEEEEcCCcHHHHHhcCCccc-EEEeC
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTP-------YLDRVHLEEVYLTPESYWYKLYRYEIP-VLFLG 121 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~-------l~~e~~~eeIDId~d~el~~~y~~~VP-Vl~id 121 (170)
...+-+..|+++||++|...+...-+ ++..|-...+|.+....-....+..+| ++|+|
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g~~vPtivFld 87 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDGQYVPRIMFVD 87 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccCcccCeEEEEC
Confidence 34556888999999999999987543 112233334444322111112446799 55664
No 183
>KOG0911|consensus
Probab=95.99 E-value=0.012 Score=50.19 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=61.0
Q ss_pred EeeCCCCcchhhhhccCCCCccccc-----CCCCeEEEEcC-----CCCchHHHHHHHHhccCCcccEEEEEcCCcHHHH
Q psy17234 39 VYNTPESTMSVLLEKLPVKSNFITS-----QRKPMLNLFTK-----DPCPLCDELKLELTPYLDRVHLEEVYLTPESYWY 108 (170)
Q Consensus 39 iCnGgG~~~a~v~e~~~~~~~~~~s-----~~~~~VtLYTk-----~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~ 108 (170)
.|..+++.+.-+.|..-.+.-.+.+ -....|++|=| |.|++=..+...|+.++ +.|...||-+|++++
T Consensus 106 ~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~n--V~~~~fdIL~DeelR 183 (227)
T KOG0911|consen 106 SASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHN--VNYTIFDVLTDEELR 183 (227)
T ss_pred ccccCCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcC--CCeeEEeccCCHHHH
Confidence 5667777777777732222210000 12345778754 67999999999999976 679999999999887
Q ss_pred Hh---cC--CcccEEEeCCEEE
Q psy17234 109 KL---YR--YEIPVLFLGGRFV 125 (170)
Q Consensus 109 ~~---y~--~~VPVl~idGe~i 125 (170)
+- |. -+.|+||++|+++
T Consensus 184 qglK~fSdWPTfPQlyI~GEFi 205 (227)
T KOG0911|consen 184 QGLKEFSDWPTFPQLYVKGEFI 205 (227)
T ss_pred HHhhhhcCCCCccceeECCEec
Confidence 55 43 4899999999997
No 184
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=95.98 E-value=0.054 Score=43.61 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCCc--ccEEEEEcCCc--------------------HHHHHhcC-CcccEEE-
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLDR--VHLEEVYLTPE--------------------SYWYKLYR-YEIPVLF- 119 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~e--~~~eeIDId~d--------------------~el~~~y~-~~VPVl~- 119 (170)
+..+.|..|+.+|||.|......+.++..+ +.+.-+..+++ .++.+.|+ ..+|..+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l 152 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL 152 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence 345678889999999999987777654322 44555553222 22333444 3488443
Q ss_pred e--CCEEEEecC-CCHHHHHHHHHhc
Q psy17234 120 L--GGRFVCRNR-FNAQILMSNECIF 142 (170)
Q Consensus 120 i--dGe~i~~~r-~d~e~L~~~L~~~ 142 (170)
+ +|+....+. -..+.+++.|++.
T Consensus 153 ID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 153 LDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred ECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 3 577665544 3557788888753
No 185
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.93 E-value=0.033 Score=48.06 Aligned_cols=77 Identities=10% Similarity=0.102 Sum_probs=58.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCCc--ccEEEEEcCCc-----------HHHHHhcC-CcccEEEe---C-CE--EEE
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLDR--VHLEEVYLTPE-----------SYWYKLYR-YEIPVLFL---G-GR--FVC 126 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~e--~~~eeIDId~d-----------~el~~~y~-~~VPVl~i---d-Ge--~i~ 126 (170)
.-+.+|.++.||+|...-..|+.+..+ +++..|++|.. ..++++.+ ..+|.+|. + ++ .+.
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~ 231 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPLA 231 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEEe
Confidence 568899999999999999999887654 67777877765 34666776 46997764 2 33 468
Q ss_pred ecCCCHHHHHHHHHhcc
Q psy17234 127 RNRFNAQILMSNECIFQ 143 (170)
Q Consensus 127 ~~r~d~e~L~~~L~~~~ 143 (170)
+|-.+.++|.+.+...+
T Consensus 232 ~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 232 YGFISQDELKERILNVL 248 (256)
T ss_pred eccCCHHHHHHHHHHHH
Confidence 99999999998886543
No 186
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.92 E-value=0.032 Score=47.96 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=57.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCc--ccEEEEEcCCc-----------HHHHHhcC-CcccEEEe---C-CE--EE
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDR--VHLEEVYLTPE-----------SYWYKLYR-YEIPVLFL---G-GR--FV 125 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e--~~~eeIDId~d-----------~el~~~y~-~~VPVl~i---d-Ge--~i 125 (170)
..-+.+|.++.||+|...-..|+.+..+ +++.-|++|.. ....++.+ ..+|.+|. + ++ .+
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv 223 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPL 223 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEE
Confidence 3568999999999999999999987655 66666777652 22445555 46897664 2 33 46
Q ss_pred EecCCCHHHHHHHHHhcc
Q psy17234 126 CRNRFNAQILMSNECIFQ 143 (170)
Q Consensus 126 ~~~r~d~e~L~~~L~~~~ 143 (170)
.+|-.+.++|.+.+...+
T Consensus 224 ~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 224 SYGFITQDDLAKRFLNVS 241 (248)
T ss_pred eeccCCHHHHHHHHHHHH
Confidence 889999999999887543
No 187
>PLN02378 glutathione S-transferase DHAR1
Probab=95.85 E-value=0.039 Score=44.79 Aligned_cols=63 Identities=16% Similarity=0.316 Sum_probs=46.1
Q ss_pred CCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhcC--CcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 75 DPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYR--YEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 75 ~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y~--~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
..||+|.++.-+|+..+-+++++.+|+...++++.+.. -+||++..||..+ .+-..|...|.+
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l----~ES~aI~~YL~~ 82 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWV----TDSDVIVGILEE 82 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEe----cCHHHHHHHHHH
Confidence 45999999999999877667777787765554444433 4799999888754 466677777763
No 188
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=95.84 E-value=0.0086 Score=43.05 Aligned_cols=54 Identities=20% Similarity=0.394 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccC----CcccEEEEEcCCc----HHHHHhcCC-cccEEE
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYL----DRVHLEEVYLTPE----SYWYKLYRY-EIPVLF 119 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~----~e~~~eeIDId~d----~el~~~y~~-~VPVl~ 119 (170)
..+.|..|..+|||.|......|+++. .++.+..+. +.+ .++.++++. ..|+++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEe
Confidence 457788899999999999888877643 224444442 222 346677776 488764
No 189
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=95.79 E-value=0.13 Score=35.30 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=47.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc----HHHHHhcCC--cccEEEeC-CEEEEecCCCHHHHHHHH
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE----SYWYKLYRY--EIPVLFLG-GRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~el~~~y~~--~VPVl~id-Ge~i~~~r~d~e~L~~~L 139 (170)
|++++|.-++ .|..++-+|+..+.+++...+|.+.. +++.+.... .||++..+ |..+. ..-.|...|
T Consensus 1 ~~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~----es~AI~~YL 74 (76)
T PF02798_consen 1 MTLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLT----ESNAILRYL 74 (76)
T ss_dssp EEEEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEE----SHHHHHHHH
T ss_pred CEEEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEE----cHHHHHHHh
Confidence 4689999998 88889999998765567777777554 566666544 79999999 88763 344444444
No 190
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=95.54 E-value=0.012 Score=44.15 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=33.8
Q ss_pred eEEEEcCCCCc------hHHHHHHHHhccCCcccEEEEEcCCcHH----HHHhcC---------Ccc-cEEEeCCEEE
Q psy17234 68 MLNLFTKDPCP------LCDELKLELTPYLDRVHLEEVYLTPESY----WYKLYR---------YEI-PVLFLGGRFV 125 (170)
Q Consensus 68 ~VtLYTk~~Cp------lCd~Ak~~L~~l~~e~~~eeIDId~d~e----l~~~y~---------~~V-PVl~idGe~i 125 (170)
.|.+|+.+-=+ .|.++..+|+... ++|+++||..+++ |++..+ ... |.||.||+++
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~k--I~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~ 77 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKK--IPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYC 77 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT----EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcC--CCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEE
Confidence 36666655433 4677788888844 8999999999954 333342 234 6999999997
No 191
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=95.50 E-value=0.065 Score=40.26 Aligned_cols=56 Identities=25% Similarity=0.336 Sum_probs=37.8
Q ss_pred CCCCeEEEEcCC-CCchHHHHHHHHhccC-----CcccEEEEEcCCcH---HHHHhcCCcccEEE
Q psy17234 64 QRKPMLNLFTKD-PCPLCDELKLELTPYL-----DRVHLEEVYLTPES---YWYKLYRYEIPVLF 119 (170)
Q Consensus 64 ~~~~~VtLYTk~-~CplCd~Ak~~L~~l~-----~e~~~eeIDId~d~---el~~~y~~~VPVl~ 119 (170)
+..+.|..|..+ |||.|...-..|.++. .++.+..+..+.++ ++.++++...|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~ 91 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLS 91 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEe
Confidence 345567777777 9999999987777652 23788888888884 33444444455544
No 192
>PLN02395 glutathione S-transferase
Probab=95.48 E-value=0.13 Score=41.01 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=45.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCC----cHHHHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTP----ESYWYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~----d~el~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
|.++||+.+.|+ +.+++-+|.+.+.+++++.+|... ++++.+..- -+||+|..||..+ ++-..|.+.|.+
T Consensus 1 ~~~~ly~~~~~~-~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l----~ES~aI~~YL~~ 75 (215)
T PLN02395 1 MVLKVYGPAFAS-PKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKI----FESRAIMRYYAE 75 (215)
T ss_pred CeEEEEcCCcCc-HHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEE----EcHHHHHHHHHH
Confidence 358999988865 788888888866445555555532 255555433 4799999888654 455556666653
No 193
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=95.48 E-value=0.13 Score=35.67 Aligned_cols=67 Identities=9% Similarity=-0.022 Sum_probs=45.5
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHh----c--CCcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKL----Y--RYEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~----y--~~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
.++|..+..+.|..++-+|+..+.+++++.+|. .+++.+. + ...||++.+||..+ .+...|...|.+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~--~~~~~~~~~~~~~~~g~vP~L~~~g~~l----~ES~AI~~YL~~ 74 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIES--AEDLEKLKKDGSLMFQQVPMVEIDGMKL----VQTRAILNYIAG 74 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEecc--HHHHHhhccccCCCCCCCCEEEECCEEE----eeHHHHHHHHHH
Confidence 578999999999999999998764444444443 3433221 1 23799999898665 456666666653
No 194
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=95.46 E-value=0.076 Score=45.00 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=50.0
Q ss_pred CCCCchHHHHHHHHhccCCcccEEEEEcCCcH-HHHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHHHhcccc
Q psy17234 74 KDPCPLCDELKLELTPYLDRVHLEEVYLTPES-YWYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNECIFQCQ 145 (170)
Q Consensus 74 k~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~-el~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L~~~~~~ 145 (170)
.+.||+|.++.-.|...+-++++..+|+...+ ++.+..- ..|||+..+|..+ .+...|.+.|....++
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l----~ES~aI~eYL~e~~~~ 85 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVK----TDVNKIEEFLEETLCP 85 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEe----ecHHHHHHHHHHHcCC
Confidence 46899999999999987655677777776654 4444433 4799998888765 6788888888755443
No 195
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=95.44 E-value=0.022 Score=47.57 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=47.5
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCc--c---cEE--------EEEcCCcHHHHHh---c----C---CcccEEEeCCEEE
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDR--V---HLE--------EVYLTPESYWYKL---Y----R---YEIPVLFLGGRFV 125 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e--~---~~e--------eIDId~d~el~~~---y----~---~~VPVl~idGe~i 125 (170)
|.|||..+|..|--|-++|.++..+ + .|. --|--..+++.++ | + ...|.+++||...
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 7899999999999999999987543 1 222 1223333444322 3 2 2479999999876
Q ss_pred EecCCCHHHHHHHHHhcccc
Q psy17234 126 CRNRFNAQILMSNECIFQCQ 145 (170)
Q Consensus 126 ~~~r~d~e~L~~~L~~~~~~ 145 (170)
. .+.+.+.+..+|.+...+
T Consensus 82 ~-~g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 82 R-VGSDRAAVEAAIQAARAR 100 (202)
T ss_dssp E-ETT-HHHHHHHHHHHHHT
T ss_pred e-eccCHHHHHHHHHHhhcc
Confidence 4 578999999999866544
No 196
>KOG3029|consensus
Probab=95.40 E-value=0.055 Score=48.22 Aligned_cols=69 Identities=17% Similarity=0.347 Sum_probs=49.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc--HHHHHhcC--CcccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE--SYWYKLYR--YEIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d--~el~~~y~--~~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
..+..++||--..||+|-+++++|+-.+ +.|..|.++.- .++ +|. ..||.|.++|+.. .|...|...|
T Consensus 86 ~s~L~l~LyQyetCPFCcKVrAFLDyhg--isY~VVEVnpV~r~eI--k~SsykKVPil~~~Geqm----~dSsvIIs~l 157 (370)
T KOG3029|consen 86 GSPLDLVLYQYETCPFCCKVRAFLDYHG--ISYAVVEVNPVLRQEI--KWSSYKKVPILLIRGEQM----VDSSVIISLL 157 (370)
T ss_pred CCCceEEEEeeccCchHHHHHHHHhhcC--CceEEEEecchhhhhc--cccccccccEEEecccee----chhHHHHHHH
Confidence 3356899999999999999999999754 56655555443 333 232 3599999999974 5666666666
Q ss_pred H
Q psy17234 140 C 140 (170)
Q Consensus 140 ~ 140 (170)
+
T Consensus 158 a 158 (370)
T KOG3029|consen 158 A 158 (370)
T ss_pred H
Confidence 4
No 197
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=95.39 E-value=0.087 Score=39.42 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhcc----CC---cccEEEEEcCCc
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPY----LD---RVHLEEVYLTPE 104 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l----~~---e~~~eeIDId~d 104 (170)
+....+..|..+||+.|......|+++ .. ++.+..++++.+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~ 63 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRS 63 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCC
Confidence 445678889999999999987777643 22 366777777765
No 198
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.35 E-value=0.11 Score=39.30 Aligned_cols=76 Identities=11% Similarity=0.105 Sum_probs=54.2
Q ss_pred CCeEEEEcCCC-CchHH------HHHHHHhcc------CCcccEEEEEcCCc------HHHHHhcC---CcccEEEeCCE
Q psy17234 66 KPMLNLFTKDP-CPLCD------ELKLELTPY------LDRVHLEEVYLTPE------SYWYKLYR---YEIPVLFLGGR 123 (170)
Q Consensus 66 ~~~VtLYTk~~-CplCd------~Ak~~L~~l------~~e~~~eeIDId~d------~el~~~y~---~~VPVl~idGe 123 (170)
..++++|+... |--|. +.-+||+.. ++.|.|+.|||..+ .++.++-. +--|+|+++|+
T Consensus 4 ~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivvede 83 (106)
T COG4837 4 EAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVEDE 83 (106)
T ss_pred eeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcce
Confidence 45789999985 88884 455666642 23399999999765 23444432 45799999999
Q ss_pred EEEecCCCHHHHHHHHHh
Q psy17234 124 FVCRNRFNAQILMSNECI 141 (170)
Q Consensus 124 ~i~~~r~d~e~L~~~L~~ 141 (170)
.+..|.+....+.+...+
T Consensus 84 iVaeGnprlKdiy~~m~d 101 (106)
T COG4837 84 IVAEGNPRLKDIYRVMDD 101 (106)
T ss_pred EeecCCchHHHHHHHHHH
Confidence 999888887777766543
No 199
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=95.27 E-value=0.079 Score=45.35 Aligned_cols=64 Identities=20% Similarity=0.368 Sum_probs=46.1
Q ss_pred CCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhcC--CcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 74 KDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYR--YEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 74 k~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y~--~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
.-+||+|.++.-+|++.+.++++..+|....++++.... ..|||+..||..+ .+-..|.+.|..
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L----~ES~aI~~YL~e 135 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWV----ADSDVITQALEE 135 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEE----ecHHHHHHHHHH
Confidence 445999999999999877666777777766555544443 4799999988654 455667777753
No 200
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=95.26 E-value=0.13 Score=40.16 Aligned_cols=84 Identities=17% Similarity=0.272 Sum_probs=50.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccC-----CcccEEEEEcCC-------c-HHHH---------------------H
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYL-----DRVHLEEVYLTP-------E-SYWY---------------------K 109 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~-----~e~~~eeIDId~-------d-~el~---------------------~ 109 (170)
+....|..|..+|||.|......|.++. .++.+.-|.++. + .++. +
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 3456788888999999987655555433 236777777764 2 2222 2
Q ss_pred hcC-Cccc-EEEe--CCEEEEecC-----------CCHHHHHHHHHhccccch
Q psy17234 110 LYR-YEIP-VLFL--GGRFVCRNR-----------FNAQILMSNECIFQCQEV 147 (170)
Q Consensus 110 ~y~-~~VP-Vl~i--dGe~i~~~r-----------~d~e~L~~~L~~~~~~~~ 147 (170)
.|+ ..+| ++++ +|+.+..+. .+.+.|+++|+++....-
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 233 2478 3344 466654432 356889999986655443
No 201
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=95.15 E-value=0.089 Score=35.64 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=41.9
Q ss_pred CCchHHHHHHHHhccCCcccEEEEEcCCc----HHHHHhcC--CcccEEEe-CCEEEEecCCCHHHHHHHHHh
Q psy17234 76 PCPLCDELKLELTPYLDRVHLEEVYLTPE----SYWYKLYR--YEIPVLFL-GGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 76 ~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~el~~~y~--~~VPVl~i-dGe~i~~~r~d~e~L~~~L~~ 141 (170)
.||+|.++.-+|+.++-++++..++...+ ++++.++. .+||+|.. +|+.+ .|-..|.+.|+.
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi----~eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVI----NESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEE----ESHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEe----eCHHHHHHHHhc
Confidence 59999999999998775566666644222 24444443 47999998 78854 477777777753
No 202
>KOG0190|consensus
Probab=94.94 E-value=0.039 Score=51.76 Aligned_cols=81 Identities=23% Similarity=0.143 Sum_probs=61.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhc-------cCCcccEEEEEcCCcHHHHHhcC-CcccEE--EeCCE--EEEecCCCHH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTP-------YLDRVHLEEVYLTPESYWYKLYR-YEIPVL--FLGGR--FVCRNRFNAQ 133 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~-------l~~e~~~eeIDId~d~el~~~y~-~~VPVl--~idGe--~i~~~r~d~e 133 (170)
.-.++-|..|||+.|.+.....++ -...+.+-+||-+++.++..+|. ...|.| |.||. ..-.|+-+.+
T Consensus 43 ~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~ad 122 (493)
T KOG0190|consen 43 EFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREAD 122 (493)
T ss_pred ceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcceeccCcccHH
Confidence 345788999999999876655443 22347899999999999999998 469966 55887 4466788999
Q ss_pred HHHHHHHhccccc
Q psy17234 134 ILMSNECIFQCQE 146 (170)
Q Consensus 134 ~L~~~L~~~~~~~ 146 (170)
.|-.||.+-.+--
T Consensus 123 gIv~wl~kq~gPa 135 (493)
T KOG0190|consen 123 GIVKWLKKQSGPA 135 (493)
T ss_pred HHHHHHHhccCCC
Confidence 9999998655443
No 203
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.92 E-value=0.11 Score=48.51 Aligned_cols=76 Identities=20% Similarity=0.156 Sum_probs=58.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccC---CcccEEEEEcCCcHHHHHhcCC-cccEEEe---CCE---EEEecCCCHHHHH
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYL---DRVHLEEVYLTPESYWYKLYRY-EIPVLFL---GGR---FVCRNRFNAQILM 136 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~---~e~~~eeIDId~d~el~~~y~~-~VPVl~i---dGe---~i~~~r~d~e~L~ 136 (170)
..+.+|+.+.|.+|.+++++|+++. +.++++.+|..++.+++++|+. .+|.+.+ +|+ ..+++-+.-.++.
T Consensus 368 v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~ 447 (555)
T TIGR03143 368 VTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELN 447 (555)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHhHH
Confidence 3678899999999999999999754 3489999999999999999984 6895543 343 3466667777777
Q ss_pred HHHHhc
Q psy17234 137 SNECIF 142 (170)
Q Consensus 137 ~~L~~~ 142 (170)
..+.+.
T Consensus 448 s~i~~i 453 (555)
T TIGR03143 448 SFILAL 453 (555)
T ss_pred HHHHHH
Confidence 766543
No 204
>KOG1422|consensus
Probab=94.90 E-value=0.12 Score=43.90 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=53.4
Q ss_pred CCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhc--CCcccEEEeCCEEEEecCCCHHHHHHHHHhccc
Q psy17234 76 PCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLY--RYEIPVLFLGGRFVCRNRFNAQILMSNECIFQC 144 (170)
Q Consensus 76 ~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y--~~~VPVl~idGe~i~~~r~d~e~L~~~L~~~~~ 144 (170)
.||+|.+.-..|..-...|.+..||+...++|+... +..+|+|..||+. .-|-++|+..|+..-+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~----~tDs~~Ie~~Lee~l~ 86 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKW----VTDSDKIEEFLEEKLP 86 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCce----eccHHHHHHHHHHhcC
Confidence 699999999999864445899999999999998664 4679999999965 4788888888876544
No 205
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.87 E-value=0.11 Score=52.63 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCCc-----ccEEEEE---cCC--c----------------------HHHHHhcC
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLDR-----VHLEEVY---LTP--E----------------------SYWYKLYR 112 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~e-----~~~eeID---Id~--d----------------------~el~~~y~ 112 (170)
..+.|.-|+.+||+.|......|+++.++ +.+.-|. +|. + .++.+.|+
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~ 499 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELG 499 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcC
Confidence 45678999999999999988888765432 3333331 122 1 22334455
Q ss_pred -CcccEE-Ee--CCEEE--EecCCCHHHHHHHHHhc
Q psy17234 113 -YEIPVL-FL--GGRFV--CRNRFNAQILMSNECIF 142 (170)
Q Consensus 113 -~~VPVl-~i--dGe~i--~~~r~d~e~L~~~L~~~ 142 (170)
..+|.. ++ +|+.+ ..+..++++|.+.|.+.
T Consensus 500 V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 500 VSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 358933 34 67765 44556777877777643
No 206
>smart00594 UAS UAS domain.
Probab=94.81 E-value=0.25 Score=37.02 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhc-------cCCcccEEEEEcCCc--HHHHHhcCC-cccEE-Ee--CC-EE------
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTP-------YLDRVHLEEVYLTPE--SYWYKLYRY-EIPVL-FL--GG-RF------ 124 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~-------l~~e~~~eeIDId~d--~el~~~y~~-~VPVl-~i--dG-e~------ 124 (170)
....++.+..+||+.|....+.+-. ++..+-+-.+|++.+ .++.+.|+. ..|.+ ++ +| +.
T Consensus 27 ~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~ 106 (122)
T smart00594 27 RRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVG 106 (122)
T ss_pred cCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEec
Confidence 3467888999999999997765322 222366667888877 467888874 68944 34 23 21
Q ss_pred EEecCCCHHHHHHHH
Q psy17234 125 VCRNRFNAQILMSNE 139 (170)
Q Consensus 125 i~~~r~d~e~L~~~L 139 (170)
...|..++++|.+.|
T Consensus 107 ~~~G~~~~~~l~~~l 121 (122)
T smart00594 107 VVEGEISPEELMTFL 121 (122)
T ss_pred cccCCCCHHHHHHhh
Confidence 156778888888776
No 207
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=94.66 E-value=0.14 Score=40.57 Aligned_cols=56 Identities=14% Similarity=0.107 Sum_probs=39.4
Q ss_pred EEEcCCCCchHHHHHHHHhccCCcccEEEEEcCC-----cHHHHHhcC-CcccEEEeCCEEE
Q psy17234 70 NLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTP-----ESYWYKLYR-YEIPVLFLGGRFV 125 (170)
Q Consensus 70 tLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~-----d~el~~~y~-~~VPVl~idGe~i 125 (170)
+||+-+.|+.|.+++-+|...+.+++.+.+|... .+++.+... .+||++..||..+
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l 62 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVL 62 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEe
Confidence 4788899999999999999976445555555412 134444333 4799999998765
No 208
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=94.64 E-value=0.34 Score=38.93 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=59.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhcCC-----cccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYRY-----EIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y~~-----~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
...+++|-.|+|+=|+.=-+.|+.. +|++..++.++-..+.++++. ..=..+|||.++ .+.+..+.++..|+
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~--Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~v-EGHVPa~aI~~ll~ 101 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKAN--GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYV-EGHVPAEAIARLLA 101 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhC--CcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEE-eccCCHHHHHHHHh
Confidence 4568999999999999999999963 488888887777888887652 344788999996 57789999999987
Q ss_pred hc
Q psy17234 141 IF 142 (170)
Q Consensus 141 ~~ 142 (170)
.-
T Consensus 102 ~~ 103 (149)
T COG3019 102 EK 103 (149)
T ss_pred CC
Confidence 43
No 209
>PTZ00056 glutathione peroxidase; Provisional
Probab=94.62 E-value=0.15 Score=41.66 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=26.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccC----C-cccEEEEEcC
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYL----D-RVHLEEVYLT 102 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~----~-e~~~eeIDId 102 (170)
+..+.|..|..+|||.|..--..|.++. . ++.+.-|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 3456788999999999987555555542 2 3666667653
No 210
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=94.62 E-value=0.094 Score=36.53 Aligned_cols=45 Identities=31% Similarity=0.478 Sum_probs=32.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhcc----C--CcccEEEEEcCCc-HHHHHh
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPY----L--DRVHLEEVYLTPE-SYWYKL 110 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l----~--~e~~~eeIDId~d-~el~~~ 110 (170)
.+.+..|+.+||+.|.+..+.|.++ . .++++..|.+|++ +++.+.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~ 53 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKF 53 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHH
Confidence 3568899999999999998888753 3 4588999999988 444433
No 211
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.18 Score=40.28 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=53.6
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCC---cHHHHHhcC-CcccEEEeCCE-EEEecCCCHHHHHHHHHhcc
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTP---ESYWYKLYR-YEIPVLFLGGR-FVCRNRFNAQILMSNECIFQ 143 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~---d~el~~~y~-~~VPVl~idGe-~i~~~r~d~e~L~~~L~~~~ 143 (170)
+++|+.+.+|+|.++.-.|.+++.+++.+.+|+.. ++++.+..- -+||||..||- .+ .+-..|.+.|....
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l----~ES~AI~~YL~~~~ 76 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVL----TESGAILEYLAERY 76 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCee----ecHHHHHHHHHhhC
Confidence 37899999999999999999986567777788774 245555543 47999998754 33 56667777776555
Q ss_pred ccc
Q psy17234 144 CQE 146 (170)
Q Consensus 144 ~~~ 146 (170)
.+.
T Consensus 77 ~~~ 79 (211)
T COG0625 77 PGP 79 (211)
T ss_pred CCC
Confidence 544
No 212
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=94.51 E-value=0.071 Score=41.11 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=30.3
Q ss_pred cCCCCchHHHHHHHHhc----cCCcccEEEEEcCCcHHHHHh---------cC-CcccEEEe
Q psy17234 73 TKDPCPLCDELKLELTP----YLDRVHLEEVYLTPESYWYKL---------YR-YEIPVLFL 120 (170)
Q Consensus 73 Tk~~CplCd~Ak~~L~~----l~~e~~~eeIDId~d~el~~~---------y~-~~VPVl~i 120 (170)
+++|||.|..|+..+++ ...+..+..+.+-+.++|... ++ ..||.|+.
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 46799999999988775 233478888888877777432 33 36997775
No 213
>KOG0406|consensus
Probab=94.36 E-value=0.1 Score=44.66 Aligned_cols=59 Identities=20% Similarity=0.198 Sum_probs=46.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhcC---CcccEEEeCCEEE
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYR---YEIPVLFLGGRFV 125 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y~---~~VPVl~idGe~i 125 (170)
-.|.||+--.||+=.+++-+|..-+.+++|.++|....++|.-+.. ..||||..||+.+
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i 69 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPI 69 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCcee
Confidence 4599999999999999999999755445555555554578776654 5799999999986
No 214
>KOG4277|consensus
Probab=94.29 E-value=0.06 Score=48.63 Aligned_cols=107 Identities=13% Similarity=0.108 Sum_probs=77.6
Q ss_pred hhccCCCCcccccCCCCeEEEEcCCCCchHHHHHHHHhccCCc-------ccEEEEEcCCcHHHHHhcCC-cccEE-Ee-
Q psy17234 51 LEKLPVKSNFITSQRKPMLNLFTKDPCPLCDELKLELTPYLDR-------VHLEEVYLTPESYWYKLYRY-EIPVL-FL- 120 (170)
Q Consensus 51 ~e~~~~~~~~~~s~~~~~VtLYTk~~CplCd~Ak~~L~~l~~e-------~~~eeIDId~d~el~~~y~~-~VPVl-~i- 120 (170)
+|.+..|-- .+.+..+.++-|..|||..|+++.....+++.+ +.+-..|-+.-+..+.+++. .-|.+ |.
T Consensus 30 VeDLddkFk-dnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~k 108 (468)
T KOG4277|consen 30 VEDLDDKFK-DNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFK 108 (468)
T ss_pred hhhhhHHhh-hcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEec
Confidence 444443322 223556789999999999999999998886543 45667777777999999884 57855 33
Q ss_pred CCEEE-EecCCCHHHHHHHHHhccccchhcccCCCCccc
Q psy17234 121 GGRFV-CRNRFNAQILMSNECIFQCQEVTMFNEAPRMKT 158 (170)
Q Consensus 121 dGe~i-~~~r~d~e~L~~~L~~~~~~~~~~~~~~~~~~~ 158 (170)
+|..+ -.++-+++.|.+.-++.++.-+...||..-|+.
T Consensus 109 gd~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fe 147 (468)
T KOG4277|consen 109 GDHAIDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFE 147 (468)
T ss_pred CCeeeecCCCccHHHHHHHHHhcccceeeecChhHHHHH
Confidence 55554 345678889999999999998888888655543
No 215
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=94.26 E-value=0.078 Score=41.97 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhcc----C--------CcccEEEEEcCCcH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPY----L--------DRVHLEEVYLTPES 105 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l----~--------~e~~~eeIDId~d~ 105 (170)
+..+.+..|+.+|||.|.+.-..|.++ . .++++..|+.|+++
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~ 77 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSE 77 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCH
Confidence 446678899999999999999888763 1 13788888887763
No 216
>KOG2824|consensus
Probab=94.19 E-value=0.11 Score=45.63 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=54.9
Q ss_pred CeEEEEcCC------CCchHHHHHHHHhccCCcccEEEEEcCCc----HHHHHhcCC-----cccEEEeCCEEEE-----
Q psy17234 67 PMLNLFTKD------PCPLCDELKLELTPYLDRVHLEEVYLTPE----SYWYKLYRY-----EIPVLFLGGRFVC----- 126 (170)
Q Consensus 67 ~~VtLYTk~------~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~el~~~y~~-----~VPVl~idGe~i~----- 126 (170)
-.|++|+++ .=--|..++.+|+.+. +.|++.||.-| .||.+..+. ..|+||++|.++-
T Consensus 131 ~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~--V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV 208 (281)
T KOG2824|consen 131 DRVVVYTTSLRGVRKTFEDCNAVRAILESFR--VKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEV 208 (281)
T ss_pred ceEEEEEcccchhhhhHHHHHHHHHHHHhCc--eEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHh
Confidence 379999975 3346999999999965 89999999998 456655543 5899999999982
Q ss_pred ecCCCHHHHHHHHHhcc
Q psy17234 127 RNRFNAQILMSNECIFQ 143 (170)
Q Consensus 127 ~~r~d~e~L~~~L~~~~ 143 (170)
..=.+..+|.+.|+-+.
T Consensus 209 ~~LnE~GkL~~lL~~~p 225 (281)
T KOG2824|consen 209 VRLNEEGKLGKLLKGIP 225 (281)
T ss_pred hhhhhcchHHHHHhcCC
Confidence 11244556666666555
No 217
>PRK10357 putative glutathione S-transferase; Provisional
Probab=94.02 E-value=0.22 Score=39.44 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=42.8
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCC--cHHHHHhcC--CcccEEEe-CCEEEEecCCCHHHHHHHHH
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTP--ESYWYKLYR--YEIPVLFL-GGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~--d~el~~~y~--~~VPVl~i-dGe~i~~~r~d~e~L~~~L~ 140 (170)
++||+.+.|+.+.++.-.|+..+ ++|+.++++. .+.....+. -+|||++. ||..+ .+-..|...|.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~g--v~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l----~eS~aI~~yL~ 71 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKG--ITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECW----FDSPIIAEYIE 71 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcC--CCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCee----ecHHHHHHHHH
Confidence 37999999999999999999865 4555555543 333333343 47999985 56554 34444444444
No 218
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=93.98 E-value=0.1 Score=38.59 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=24.7
Q ss_pred EcCCCCchHHHHHHHHhccCCcccEEEEEcCCc
Q psy17234 72 FTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE 104 (170)
Q Consensus 72 YTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d 104 (170)
|+.+.|.-|..|.++|++. +++|+.+|+.++
T Consensus 1 Y~~~~C~t~rka~~~L~~~--gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN--GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT--T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHc--CCCeEeehhhhC
Confidence 8899999999999999995 489999999886
No 219
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=93.93 E-value=0.2 Score=40.77 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=36.5
Q ss_pred CCeEEEEcCCCCchHHHHHHH-Hh------ccCCcccEEEEEcCCcHHHHHhc--------C-CcccE-EEe--CCEEEE
Q psy17234 66 KPMLNLFTKDPCPLCDELKLE-LT------PYLDRVHLEEVYLTPESYWYKLY--------R-YEIPV-LFL--GGRFVC 126 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~-L~------~l~~e~~~eeIDId~d~el~~~y--------~-~~VPV-l~i--dGe~i~ 126 (170)
.+-+.-.+.+|||+|+.+.+. ++ -++..|--..+|-++.|++...| + -.-|. ||. +|+.+.
T Consensus 38 KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~ 117 (163)
T PF03190_consen 38 KPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFF 117 (163)
T ss_dssp --EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEE
T ss_pred CcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeee
Confidence 345677789999999987763 22 12333677788988888887777 3 36883 343 788875
Q ss_pred ec
Q psy17234 127 RN 128 (170)
Q Consensus 127 ~~ 128 (170)
.+
T Consensus 118 ~~ 119 (163)
T PF03190_consen 118 GG 119 (163)
T ss_dssp EE
T ss_pred ee
Confidence 33
No 220
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=93.90 E-value=0.14 Score=37.87 Aligned_cols=56 Identities=20% Similarity=0.052 Sum_probs=35.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCCc-----ccEEEEEcC-----CcH----HHHHhcCCcccEEE
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLDR-----VHLEEVYLT-----PES----YWYKLYRYEIPVLF 119 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~e-----~~~eeIDId-----~d~----el~~~y~~~VPVl~ 119 (170)
+..+.|..|..+|||.|...-..|+++..+ +.+.-|+.+ .++ ++.++++...|++.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVAN 91 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEE
Confidence 345678888999999999987777764322 444444331 222 35566677778665
No 221
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=93.87 E-value=0.13 Score=38.10 Aligned_cols=55 Identities=24% Similarity=0.280 Sum_probs=36.3
Q ss_pred CeEEE-EcCCCCchHHHHHHHHhccCC-----cccEEEEEcCCcHH---HHHhcCCcccEEEeC
Q psy17234 67 PMLNL-FTKDPCPLCDELKLELTPYLD-----RVHLEEVYLTPESY---WYKLYRYEIPVLFLG 121 (170)
Q Consensus 67 ~~VtL-YTk~~CplCd~Ak~~L~~l~~-----e~~~eeIDId~d~e---l~~~y~~~VPVl~id 121 (170)
+.|.+ |...|||.|...-..|.++.. ++.+.-|+.+...+ +.+.++...|++...
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~ 88 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADP 88 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECC
Confidence 44444 457899999998877776532 26677777766643 445566677876653
No 222
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=93.87 E-value=0.14 Score=36.85 Aligned_cols=56 Identities=23% Similarity=0.365 Sum_probs=38.2
Q ss_pred CCCeEEEEcCC-CCchHHHHHHHHhccCC-----cccEEEEEcCCcH---HHHHhcCCcccEEEe
Q psy17234 65 RKPMLNLFTKD-PCPLCDELKLELTPYLD-----RVHLEEVYLTPES---YWYKLYRYEIPVLFL 120 (170)
Q Consensus 65 ~~~~VtLYTk~-~CplCd~Ak~~L~~l~~-----e~~~eeIDId~d~---el~~~y~~~VPVl~i 120 (170)
..+.|..|... |||.|...-..|.++.. ++.+..|..+... ++.+.++...|++..
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D 89 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSD 89 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEE
T ss_pred CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccC
Confidence 34555556665 99999877766665431 3677778876663 466777777888776
No 223
>PLN02412 probable glutathione peroxidase
Probab=93.61 E-value=0.32 Score=38.39 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=24.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhcc----CC-cccEEEEEcC
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPY----LD-RVHLEEVYLT 102 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l----~~-e~~~eeIDId 102 (170)
....|..|..+|||.|...-..|.++ .. ++.+.-|+.+
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 34567778899999999755555543 21 2566666553
No 224
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=93.40 E-value=0.12 Score=38.69 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=32.3
Q ss_pred EEEEcCCCCchHHHHHHHHhccC-----CcccEEEEEcCCc---HHHHHhcCCcccEEE
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYL-----DRVHLEEVYLTPE---SYWYKLYRYEIPVLF 119 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~-----~e~~~eeIDId~d---~el~~~y~~~VPVl~ 119 (170)
|.+|...||+.|...-..|+++. .++.+.-|..+.. .++.++++...|++.
T Consensus 33 l~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~ 91 (149)
T cd03018 33 LVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLS 91 (149)
T ss_pred EEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEec
Confidence 34445899999998776666542 2356666666654 345566666667654
No 225
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=93.38 E-value=0.37 Score=40.98 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=27.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccC-----CcccEEEEEcC
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYL-----DRVHLEEVYLT 102 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~-----~e~~~eeIDId 102 (170)
+..+.|..|..+||+.|..-...|.++. .++.+.-|+.+
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 4467789999999999987665555542 22667777753
No 226
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.26 E-value=0.12 Score=43.91 Aligned_cols=36 Identities=22% Similarity=0.680 Sum_probs=26.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC--cccEEEE
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD--RVHLEEV 99 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~--e~~~eeI 99 (170)
+....|++||-+.||||.++.+.+.++.. +++++.+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~i 153 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHI 153 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEE
Confidence 44567999999999999999888775432 2444444
No 227
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=93.04 E-value=0.72 Score=31.29 Aligned_cols=53 Identities=21% Similarity=0.041 Sum_probs=35.8
Q ss_pred cCCCCchHHHHHHHHhccCCcccEEEEEcCCc---HHHHHhc-CCcccEEEeCCEEE
Q psy17234 73 TKDPCPLCDELKLELTPYLDRVHLEEVYLTPE---SYWYKLY-RYEIPVLFLGGRFV 125 (170)
Q Consensus 73 Tk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d---~el~~~y-~~~VPVl~idGe~i 125 (170)
....|++|.++.-.|+..+-+++...+|..+. +++.+.. ...||++..+|..+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l 62 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVV 62 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEE
Confidence 35679999999999998764455555554332 3443333 35799999888765
No 228
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=93.00 E-value=0.73 Score=37.00 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=36.2
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc----HHHHHhcC-CcccEEEe
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE----SYWYKLYR-YEIPVLFL 120 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~el~~~y~-~~VPVl~i 120 (170)
++||..+ .+.|.++.-+|++++-+++++.+|+..+ +++.+..- -.|||+..
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVD 57 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEe
Confidence 6899887 6999999999998775556666666543 44444433 37999987
No 229
>KOG3425|consensus
Probab=92.69 E-value=0.11 Score=40.79 Aligned_cols=48 Identities=25% Similarity=0.544 Sum_probs=35.4
Q ss_pred cCCCCchHHHHHHHHhc----cCCcccEEEEEcCCcHHHHHh---cC------CcccEEEe
Q psy17234 73 TKDPCPLCDELKLELTP----YLDRVHLEEVYLTPESYWYKL---YR------YEIPVLFL 120 (170)
Q Consensus 73 Tk~~CplCd~Ak~~L~~----l~~e~~~eeIDId~d~el~~~---y~------~~VPVl~i 120 (170)
+++|||.|.+|+..+.+ ...+..|..+++-+.+.|... |+ ..||.|.-
T Consensus 41 GqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlr 101 (128)
T KOG3425|consen 41 GQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLR 101 (128)
T ss_pred CCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeE
Confidence 35799999999998774 334478999999998888654 22 24786654
No 230
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=92.62 E-value=0.18 Score=41.55 Aligned_cols=41 Identities=2% Similarity=-0.147 Sum_probs=35.0
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC-cccE------EEEEcCCc
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD-RVHL------EEVYLTPE 104 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~-e~~~------eeIDId~d 104 (170)
.....|+-|...||+.|+.-...|.++.. +|.+ .-||.|++
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 45678999999999999999999998864 4888 88998875
No 231
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=92.14 E-value=0.27 Score=36.32 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=32.4
Q ss_pred CCeEEEEc-CCCCchHHHHHHHHhccC-----CcccEEEEEcCCcH---HHHHhcCCcccEEE
Q psy17234 66 KPMLNLFT-KDPCPLCDELKLELTPYL-----DRVHLEEVYLTPES---YWYKLYRYEIPVLF 119 (170)
Q Consensus 66 ~~~VtLYT-k~~CplCd~Ak~~L~~l~-----~e~~~eeIDId~d~---el~~~y~~~VPVl~ 119 (170)
...|..|. ..|||.|...-..|.++. .++.+.-|.++.+. ++.++++...|++.
T Consensus 24 k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~ 86 (140)
T cd03017 24 KPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLS 86 (140)
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence 34455554 689999987666655432 23667677666553 34445566667553
No 232
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=92.08 E-value=0.82 Score=35.52 Aligned_cols=61 Identities=18% Similarity=0.133 Sum_probs=38.0
Q ss_pred HHHHhccCCcccEEEEEcCCcHHHH----------HhcC-CcccEEEeCCEEEEecC-CCHHHHHHHHH-hccccc
Q psy17234 84 KLELTPYLDRVHLEEVYLTPESYWY----------KLYR-YEIPVLFLGGRFVCRNR-FNAQILMSNEC-IFQCQE 146 (170)
Q Consensus 84 k~~L~~l~~e~~~eeIDId~d~el~----------~~y~-~~VPVl~idGe~i~~~r-~d~e~L~~~L~-~~~~~~ 146 (170)
.++|++ ++++++..|+.++|+.+ +.-+ ...|++++||+.+..++ ++.++|.+|+. .+..++
T Consensus 33 ~~~Lk~--~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVdGeiv~~G~YPt~eEl~~~~~i~~~~~~ 106 (123)
T PF06953_consen 33 LDWLKE--QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVDGEIVKTGRYPTNEELAEWLGISFSELE 106 (123)
T ss_dssp HHHHHH--TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEETTEEEEESS---HHHHHHHHT--GGGTT
T ss_pred HHHHHh--CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEECCEEEEecCCCCHHHHHHHhCCCccccc
Confidence 344444 35899999999995433 2234 45899999999986665 78899999986 444443
No 233
>PRK11752 putative S-transferase; Provisional
Probab=91.62 E-value=1.4 Score=37.24 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=37.2
Q ss_pred eEEEEcCCCCchHHHHHHHHhcc------CCcccEEEEEcCCc----HHHHHhcC-CcccEEEeC
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPY------LDRVHLEEVYLTPE----SYWYKLYR-YEIPVLFLG 121 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l------~~e~~~eeIDId~d----~el~~~y~-~~VPVl~id 121 (170)
.++||+.+ ++.|.++.-+|+++ +.++++..+|+... +++.+..- -.||++..+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~ 107 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDR 107 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeC
Confidence 59999964 99999999999885 33455566666443 44544432 479999875
No 234
>KOG0191|consensus
Probab=91.02 E-value=0.55 Score=41.67 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=58.7
Q ss_pred ccccCCCCeEEEEcCCCCchHHHHHHHHhcc----CCcccEEEEEcCCcHHHHHhcCC-cccEEE--eCC-EEEEe-cCC
Q psy17234 60 FITSQRKPMLNLFTKDPCPLCDELKLELTPY----LDRVHLEEVYLTPESYWYKLYRY-EIPVLF--LGG-RFVCR-NRF 130 (170)
Q Consensus 60 ~~~s~~~~~VtLYTk~~CplCd~Ak~~L~~l----~~e~~~eeIDId~d~el~~~y~~-~VPVl~--idG-e~i~~-~r~ 130 (170)
...++....++.|..|||+.|+......+++ ...+.+-.||.+++.++.+.|+. ..|.+. ..| ..+.+ +..
T Consensus 42 ~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~ 121 (383)
T KOG0191|consen 42 FLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPR 121 (383)
T ss_pred HhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcc
Confidence 4444677889999999999999998887754 22256778888888999999985 689554 456 34433 345
Q ss_pred CHHHHHHHHHh
Q psy17234 131 NAQILMSNECI 141 (170)
Q Consensus 131 d~e~L~~~L~~ 141 (170)
+.+.+...+..
T Consensus 122 ~~~~~~~~~~~ 132 (383)
T KOG0191|consen 122 NAESLAEFLIK 132 (383)
T ss_pred cHHHHHHHHHH
Confidence 66666666653
No 235
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=90.97 E-value=0.27 Score=36.39 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccC---CcccEEEEEc
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYL---DRVHLEEVYL 101 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~---~e~~~eeIDI 101 (170)
+...+|++|+-++||+|......|.++. .++.+..++.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 4577899999999999999988887642 2245555544
No 236
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=90.50 E-value=0.31 Score=32.72 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=25.0
Q ss_pred EEEEcCCCCchHHHHHHHHhcc----CCcccEEEEEc
Q psy17234 69 LNLFTKDPCPLCDELKLELTPY----LDRVHLEEVYL 101 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l----~~e~~~eeIDI 101 (170)
|.+|..+.||+|..+.+.|+++ ..++.++.+.+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPF 37 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence 5789999999999999999875 33455554443
No 237
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=90.44 E-value=0.59 Score=34.39 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=35.0
Q ss_pred CCCeEEEEc-CCCCchHHHHHHHHhccC-----CcccEEEEEcCCcH---HHHHhc-CCcccEEE
Q psy17234 65 RKPMLNLFT-KDPCPLCDELKLELTPYL-----DRVHLEEVYLTPES---YWYKLY-RYEIPVLF 119 (170)
Q Consensus 65 ~~~~VtLYT-k~~CplCd~Ak~~L~~l~-----~e~~~eeIDId~d~---el~~~y-~~~VPVl~ 119 (170)
..+.|..|. ..||+.|......|.++. .++.+..|..+... +|.+.+ ....|++.
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~ 86 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLS 86 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEE
Confidence 344555555 789999998777766532 23677777776553 344555 55667664
No 238
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=90.42 E-value=0.72 Score=44.18 Aligned_cols=77 Identities=21% Similarity=0.252 Sum_probs=57.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHhc------cCCcccEEEEEcCCc----HHHHHhcCC-cccEE-EeC--CEE--EEecCC
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTP------YLDRVHLEEVYLTPE----SYWYKLYRY-EIPVL-FLG--GRF--VCRNRF 130 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~------l~~e~~~eeIDId~d----~el~~~y~~-~VPVl-~id--Ge~--i~~~r~ 130 (170)
+-..-||.+||--|+.-++..-. ..+++.+-+.|++.+ .++.++|+. .+|.+ |.+ |++ ..-+..
T Consensus 476 pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~ 555 (569)
T COG4232 476 PVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTGFL 555 (569)
T ss_pred cEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCccee
Confidence 67888999999999999988653 112367889999998 346667764 89944 444 433 366789
Q ss_pred CHHHHHHHHHhcc
Q psy17234 131 NAQILMSNECIFQ 143 (170)
Q Consensus 131 d~e~L~~~L~~~~ 143 (170)
+.+.+.++|+++.
T Consensus 556 ~a~~~~~~l~~~~ 568 (569)
T COG4232 556 TADAFLEHLERAA 568 (569)
T ss_pred cHHHHHHHHHHhc
Confidence 9999999998764
No 239
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=89.86 E-value=2.1 Score=29.78 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=37.3
Q ss_pred chHHHHHHHHhccCCcccEEEEEcCCc-----HHHHHh------cCCcccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 78 PLCDELKLELTPYLDRVHLEEVYLTPE-----SYWYKL------YRYEIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 78 plCd~Ak~~L~~l~~e~~~eeIDId~d-----~el~~~------y~~~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
+.|..++-+|+..+.++++..+|..++ +++... -..+||++..||..+ .+...|...|.
T Consensus 10 ~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l----~ES~AIl~YLa 79 (82)
T cd03075 10 GLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKL----TQSNAILRYIA 79 (82)
T ss_pred cccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEE----eehHHHHHHHh
Confidence 566777788887765566666776542 233321 223799999888765 45556666654
No 240
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=89.34 E-value=0.58 Score=35.88 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=25.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhcc----CC-cccEEEEEc
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPY----LD-RVHLEEVYL 101 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l----~~-e~~~eeIDI 101 (170)
+..+.|..|..+|||+|...-..|.++ .. ++.+.-|+.
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 344567889999999998876655543 22 356666653
No 241
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=89.29 E-value=0.78 Score=34.30 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=34.2
Q ss_pred CCCeEEEEcCCC-CchHHHHHHHHhccCC---cccEEEEEcCCc---HHHHHhcCC-cccEE
Q psy17234 65 RKPMLNLFTKDP-CPLCDELKLELTPYLD---RVHLEEVYLTPE---SYWYKLYRY-EIPVL 118 (170)
Q Consensus 65 ~~~~VtLYTk~~-CplCd~Ak~~L~~l~~---e~~~eeIDId~d---~el~~~y~~-~VPVl 118 (170)
....|..|...| ||.|...-..|.++.. ++.+.-|++|.. .+|.+.++. .+|++
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l 87 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTL 87 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEe
Confidence 345566666666 7999998877765432 367888887765 245555553 45544
No 242
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=88.96 E-value=0.73 Score=35.37 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=35.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCC-----cccEEEEEcCC-------c----HHHHHh-cCCcccEEE
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLD-----RVHLEEVYLTP-------E----SYWYKL-YRYEIPVLF 119 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~-----e~~~eeIDId~-------d----~el~~~-y~~~VPVl~ 119 (170)
+..+.|..|..+||| |...-..|.++.. ++.+.-|+++. + .++.++ ++..-|++.
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~ 92 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFA 92 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeee
Confidence 345668889999999 9887777765422 25666666542 2 245554 666778764
No 243
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.85 E-value=1.3 Score=41.04 Aligned_cols=78 Identities=12% Similarity=0.126 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhc---cCCcccEEEEEcCCc-HHHHHhcCCcccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTP---YLDRVHLEEVYLTPE-SYWYKLYRYEIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~---l~~e~~~eeIDId~d-~el~~~y~~~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
+......-|-.-.|+-|..+.+.|.- ++.++.-..||=--- +|...+.-..||.+|.||+.+-.+|.+.++|.+.|
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvflnGe~fg~GRmtleeilaki 194 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKI 194 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEEcchhhcccceeHHHHHHHh
Confidence 55667888888899999998888773 455455555543222 34444445679999999999999999999999999
Q ss_pred Hh
Q psy17234 140 CI 141 (170)
Q Consensus 140 ~~ 141 (170)
..
T Consensus 195 ~~ 196 (520)
T COG3634 195 DT 196 (520)
T ss_pred cC
Confidence 74
No 244
>PTZ00057 glutathione s-transferase; Provisional
Probab=87.50 E-value=4.7 Score=32.24 Aligned_cols=68 Identities=9% Similarity=0.097 Sum_probs=45.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc-HHHHH--------hcC-CcccEEEeCCEEEEecCCCHHHHH
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE-SYWYK--------LYR-YEIPVLFLGGRFVCRNRFNAQILM 136 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d-~el~~--------~y~-~~VPVl~idGe~i~~~r~d~e~L~ 136 (170)
..++||+-+.-+.|..++-+|+..+ ++|+.+.+++. +++.+ ..- -.||++.+||..+ .+...|.
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~g--i~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l----~eS~AI~ 76 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLG--IEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIF----AQSQAIV 76 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcC--CCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEE----ecHHHHH
Confidence 4489999988999999999999876 67777777543 23221 111 3699999999765 3344444
Q ss_pred HHHH
Q psy17234 137 SNEC 140 (170)
Q Consensus 137 ~~L~ 140 (170)
..|.
T Consensus 77 ~YLa 80 (205)
T PTZ00057 77 RYLS 80 (205)
T ss_pred HHHH
Confidence 4444
No 245
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=87.12 E-value=1.6 Score=32.19 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=28.1
Q ss_pred CCCCeEEEEcCCCCch-HHHHHHHHhcc----CC----cccEEEEEcCC
Q psy17234 64 QRKPMLNLFTKDPCPL-CDELKLELTPY----LD----RVHLEEVYLTP 103 (170)
Q Consensus 64 ~~~~~VtLYTk~~Cpl-Cd~Ak~~L~~l----~~----e~~~eeIDId~ 103 (170)
+....|..|..+||+. |...-..|.++ .. ++.+.-|.+|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 3456788889999997 98766666653 22 26777777764
No 246
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=86.78 E-value=0.8 Score=38.54 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=37.7
Q ss_pred EEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHh-cCCcccEEEe-CCEEE
Q psy17234 70 NLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKL-YRYEIPVLFL-GGRFV 125 (170)
Q Consensus 70 tLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~-y~~~VPVl~i-dGe~i 125 (170)
.+|-=++||+|.+|+-..-=.+.+++....+=|+++--.+. ...+||++.. ||+..
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m 59 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAM 59 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccc
Confidence 46777999999999988765554455555555555433334 4568999876 56654
No 247
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=86.35 E-value=0.89 Score=39.51 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=53.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCc-----ccEE--EEE------cCCcH-------HHHHhcC-C--cccEEEeCC
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDR-----VHLE--EVY------LTPES-------YWYKLYR-Y--EIPVLFLGG 122 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e-----~~~e--eID------Id~d~-------el~~~y~-~--~VPVl~idG 122 (170)
..-|.|||..+|.-|--|-+.|.++..+ +.|. +-| --..+ .+.+.++ + ..|..++||
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnG 121 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNG 121 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeec
Confidence 4559999999999999999999988654 1221 111 10111 2222333 2 468999999
Q ss_pred EEEEecCCCHHHHHHHHHhcccc
Q psy17234 123 RFVCRNRFNAQILMSNECIFQCQ 145 (170)
Q Consensus 123 e~i~~~r~d~e~L~~~L~~~~~~ 145 (170)
.... .+-|...++.+|+++.+.
T Consensus 122 r~~~-~Gad~~~i~~~i~a~~~~ 143 (261)
T COG5429 122 RVHA-NGADPGAIEDAIAAMARR 143 (261)
T ss_pred hhhh-cCCCHHHHHHHHHHhhcc
Confidence 8754 578999999999877643
No 248
>KOG0190|consensus
Probab=85.47 E-value=0.53 Score=44.34 Aligned_cols=77 Identities=14% Similarity=0.051 Sum_probs=48.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCC------cccEEEEEcCCcHHHHHhcCCcccEEEe---CC--EEE-EecCCCHHH
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLD------RVHLEEVYLTPESYWYKLYRYEIPVLFL---GG--RFV-CRNRFNAQI 134 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~------e~~~eeIDId~d~el~~~y~~~VPVl~i---dG--e~i-~~~r~d~e~ 134 (170)
-.++-|..|||++|.+.+..+++++. ++.+-++|.+.++--...+.- .|.|+. ++ ..+ ..+.=+.+.
T Consensus 386 dVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~-fPTI~~~pag~k~~pv~y~g~R~le~ 464 (493)
T KOG0190|consen 386 DVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPSLKVDG-FPTILFFPAGHKSNPVIYNGDRTLED 464 (493)
T ss_pred ceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCccccccc-cceEEEecCCCCCCCcccCCCcchHH
Confidence 34778999999999999988887642 267888888887422112221 676643 22 122 334456667
Q ss_pred HHHHHHhccc
Q psy17234 135 LMSNECIFQC 144 (170)
Q Consensus 135 L~~~L~~~~~ 144 (170)
|.+.+..-+.
T Consensus 465 ~~~fi~~~a~ 474 (493)
T KOG0190|consen 465 LKKFIKKSAT 474 (493)
T ss_pred HHhhhccCCC
Confidence 7777765444
No 249
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=84.87 E-value=2.2 Score=32.00 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=30.6
Q ss_pred cCCCCeEEEEcCCCCchHHHHHHHHh----cc--CCcccEEEEEcCCc
Q psy17234 63 SQRKPMLNLFTKDPCPLCDELKLELT----PY--LDRVHLEEVYLTPE 104 (170)
Q Consensus 63 s~~~~~VtLYTk~~CplCd~Ak~~L~----~l--~~e~~~eeIDId~d 104 (170)
.+....|++|.-..||+|....+.+. ++ .+++.|..+++..+
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 36677899999999999999877665 34 34477888877543
No 250
>KOG0867|consensus
Probab=84.80 E-value=5.6 Score=32.97 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=51.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc----HHHHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE----SYWYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d----~el~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
+.+++|+.+.=+.|..+.-.+..++-++++..+|.... ++..+... .+||++..||-.+ ++.-.|...|..
T Consensus 1 ~~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l----~eS~AI~~Yl~~ 76 (226)
T KOG0867|consen 1 MKLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTL----WESHAILRYLAE 76 (226)
T ss_pred CCceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEE----eeHHHHHHHHHH
Confidence 35789999999999999999999875566666666655 56655543 5799999997765 444555555543
No 251
>PRK10542 glutathionine S-transferase; Provisional
Probab=84.64 E-value=5.9 Score=30.99 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=35.9
Q ss_pred EEEcCC-CCchHHHHHHHHhccCCcccEEEEEcCCc-----HHHHHhcC-CcccEEEe-CCEEEEecCCCHHHHHHHHH
Q psy17234 70 NLFTKD-PCPLCDELKLELTPYLDRVHLEEVYLTPE-----SYWYKLYR-YEIPVLFL-GGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 70 tLYTk~-~CplCd~Ak~~L~~l~~e~~~eeIDId~d-----~el~~~y~-~~VPVl~i-dGe~i~~~r~d~e~L~~~L~ 140 (170)
+||+.+ +| +.++.-+|++.+-++++..+|+... +++.+..- -.|||+.. ||..+ ++-..|.+.|.
T Consensus 2 ~l~~~~~s~--~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l----~eS~aI~~YL~ 74 (201)
T PRK10542 2 KLFYKPGAC--SLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLL----TEGVAIMQYLA 74 (201)
T ss_pred ceeecccHH--HHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEe----ecHHHHHHHHH
Confidence 566554 34 4455667877665566666666532 33433322 47999986 56554 34444444443
No 252
>KOG0913|consensus
Probab=84.37 E-value=0.54 Score=40.68 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=62.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCC-----cccEEEEEcCCcHHHHHhcC-CcccEEE--eCCEEE-EecCCCHHHHHH
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLD-----RVHLEEVYLTPESYWYKLYR-YEIPVLF--LGGRFV-CRNRFNAQILMS 137 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~-----e~~~eeIDId~d~el~~~y~-~~VPVl~--idGe~i-~~~r~d~e~L~~ 137 (170)
--++.|..||||-|...+..+..+.. ++.+-+||+..++-|.-++- ...|+|+ .||++- ..+.-|...+..
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGeFrrysgaRdk~dfis 120 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGEFRRYSGARDKNDFIS 120 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeeccccccccCcccchhHHH
Confidence 34788999999999999999998642 26889999999999988875 4579885 489875 335577888888
Q ss_pred HHHhccccch
Q psy17234 138 NECIFQCQEV 147 (170)
Q Consensus 138 ~L~~~~~~~~ 147 (170)
.+....=|++
T Consensus 121 f~~~r~w~~i 130 (248)
T KOG0913|consen 121 FEEHREWQSI 130 (248)
T ss_pred HHHhhhhhcc
Confidence 8764444443
No 253
>PRK13190 putative peroxiredoxin; Provisional
Probab=84.12 E-value=9.4 Score=31.09 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=52.9
Q ss_pred EEcCCCCchHHHHHHHHhccCC-----cccEEEEEcCCc---------------------------HHHHHhcCC-----
Q psy17234 71 LFTKDPCPLCDELKLELTPYLD-----RVHLEEVYLTPE---------------------------SYWYKLYRY----- 113 (170)
Q Consensus 71 LYTk~~CplCd~Ak~~L~~l~~-----e~~~eeIDId~d---------------------------~el~~~y~~----- 113 (170)
.|..+|||.|..--..|.++.. ++.+.-+.+|.. .++.+.|+.
T Consensus 34 ~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~ 113 (202)
T PRK13190 34 SHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENS 113 (202)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccC
Confidence 4789999999976666554321 245555555432 233344443
Q ss_pred --cccEEE-e--CCEEEE------ecCCCHHHHHHHHHhccc----cchhcccCCCCcccc
Q psy17234 114 --EIPVLF-L--GGRFVC------RNRFNAQILMSNECIFQC----QEVTMFNEAPRMKTI 159 (170)
Q Consensus 114 --~VPVl~-i--dGe~i~------~~r~d~e~L~~~L~~~~~----~~~~~~~~~~~~~~~ 159 (170)
.+|.+| + +|+... ..+-+.+++.+.|++.+. .+++--|=-|--+++
T Consensus 114 g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~~~~~~~~~p~~w~~g~~~~ 174 (202)
T PRK13190 114 GATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVNWKRKVATPANWQPGQEGI 174 (202)
T ss_pred CcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhcCCCcCCCCCcCCcee
Confidence 368444 4 465432 224589999999988776 566666655554443
No 254
>KOG1695|consensus
Probab=83.67 E-value=5.4 Score=33.46 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=48.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHH---HhcC-CcccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWY---KLYR-YEIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~---~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
+..+|+.-+..++|+-++.++.-. +++|++..++.+..|. .+.. .++||+.+||..+ ..-..|.+.|+
T Consensus 2 ~~ykL~Yf~~RG~ae~iR~lf~~a--~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i----~QS~AI~RyLA 73 (206)
T KOG1695|consen 2 PPYKLTYFNIRGLAEPIRLLFAYA--GVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKL----VQSRAILRYLA 73 (206)
T ss_pred CceEEEecCcchhHHHHHHHHHhc--CCCcceeeeccccchhhhcccCCCCCCCEEeECCEee----ccHHHHHHHHH
Confidence 456788889999999999999874 4788888888876443 3322 3699999999987 33444444444
No 255
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=83.06 E-value=2.2 Score=32.37 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=29.9
Q ss_pred CCCeEEEEc-CCCCchHHHHHHHHhcc----C-CcccEEEEEcCCcHH---HHHhcCCcccEE
Q psy17234 65 RKPMLNLFT-KDPCPLCDELKLELTPY----L-DRVHLEEVYLTPESY---WYKLYRYEIPVL 118 (170)
Q Consensus 65 ~~~~VtLYT-k~~CplCd~Ak~~L~~l----~-~e~~~eeIDId~d~e---l~~~y~~~VPVl 118 (170)
....|..|. ..|||.|...-..|.++ . .++.+.-|++|.+.+ +.+.++...|++
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l 92 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLL 92 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEE
Confidence 344555555 45799998755544432 2 236677777765533 344444455544
No 256
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=82.49 E-value=4.8 Score=30.52 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=47.3
Q ss_pred CCeEEEEcCCC-CchHHHHHHHHhccC----CcccEEEEEcCCc----HHHHHhcC--CcccEEE--eCCEEE---EecC
Q psy17234 66 KPMLNLFTKDP-CPLCDELKLELTPYL----DRVHLEEVYLTPE----SYWYKLYR--YEIPVLF--LGGRFV---CRNR 129 (170)
Q Consensus 66 ~~~VtLYTk~~-CplCd~Ak~~L~~l~----~e~~~eeIDId~d----~el~~~y~--~~VPVl~--idGe~i---~~~r 129 (170)
...+.+|--+. ||-=.+|.+.+++.. .++.+..+|+-+. .+.+++++ ..=|+++ .||+.+ +.|.
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~~aSH~~ 98 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVWHASHWD 98 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEEEEEEGGG
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEEECcccc
Confidence 34577776665 999999999988643 2278999999998 56788887 4689554 499876 7788
Q ss_pred CCHHHHH
Q psy17234 130 FNAQILM 136 (170)
Q Consensus 130 ~d~e~L~ 136 (170)
++.+.|+
T Consensus 99 It~~~lk 105 (105)
T PF11009_consen 99 ITAEALK 105 (105)
T ss_dssp -SHHHH-
T ss_pred CCHHhcC
Confidence 8888774
No 257
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=82.48 E-value=2.5 Score=35.57 Aligned_cols=57 Identities=23% Similarity=0.191 Sum_probs=40.1
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhcC--CcccEEEe
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYR--YEIPVLFL 120 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y~--~~VPVl~i 120 (170)
....++.+|.++.|+-|+.....|..-+.++++..++-..|++-.+.|. ..||+-.+
T Consensus 107 ~~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V 165 (200)
T TIGR03759 107 QGGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIRQWANRHQIDPAKV 165 (200)
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHHHHHHHcCCCHHHe
Confidence 4567899999999999999988887755568888888555544434432 34554333
No 258
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=82.12 E-value=1.3 Score=33.90 Aligned_cols=39 Identities=26% Similarity=0.418 Sum_probs=29.1
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhcc----CCcccEEEEEcC
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPY----LDRVHLEEVYLT 102 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l----~~e~~~eeIDId 102 (170)
+...+|+.|+-..||+|..+...+.++ ..++.|+.+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 567889999999999999999988754 223555555443
No 259
>PTZ00256 glutathione peroxidase; Provisional
Probab=81.77 E-value=2 Score=34.29 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=22.7
Q ss_pred EEEEcCCCCchHHHHHHHHhcc----CC-cccEEEEEcC
Q psy17234 69 LNLFTKDPCPLCDELKLELTPY----LD-RVHLEEVYLT 102 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l----~~-e~~~eeIDId 102 (170)
|.+|..+|||.|..--..|.++ .. ++.+.-|+.+
T Consensus 45 lv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 45 IVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 3567899999999866666543 22 3666666653
No 260
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=80.73 E-value=5.5 Score=28.09 Aligned_cols=57 Identities=9% Similarity=0.039 Sum_probs=36.7
Q ss_pred CCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhcCCcccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 76 PCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYRYEIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 76 ~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y~~~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
..+.|-++..+|+.++ +.|+.++....+.. .-.-.||+|..||+.+ .+-..|...|.
T Consensus 16 ~~~~~~kv~~~L~elg--lpye~~~~~~~~~~--~P~GkVP~L~~dg~vI----~eS~aIl~yL~ 72 (74)
T cd03079 16 DNASCLAVQTFLKMCN--LPFNVRCRANAEFM--SPSGKVPFIRVGNQIV----SEFGPIVQFVE 72 (74)
T ss_pred CCCCHHHHHHHHHHcC--CCcEEEecCCcccc--CCCCcccEEEECCEEE----eCHHHHHHHHh
Confidence 4455779999999876 56666665332111 1124699999999876 46666666664
No 261
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=79.96 E-value=3.5 Score=32.35 Aligned_cols=49 Identities=4% Similarity=-0.114 Sum_probs=30.7
Q ss_pred CCCeEEEEcCCC-CchHHHHHHHHhccCC---cccEEEEEcCCc---HHHHHhcCC
Q psy17234 65 RKPMLNLFTKDP-CPLCDELKLELTPYLD---RVHLEEVYLTPE---SYWYKLYRY 113 (170)
Q Consensus 65 ~~~~VtLYTk~~-CplCd~Ak~~L~~l~~---e~~~eeIDId~d---~el~~~y~~ 113 (170)
....|..|...| ||.|..-...|.++.. ++.+.-|..|.. .+|.++++.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~ 99 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGL 99 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCC
Confidence 345567777777 9999987766665432 256666666654 235555554
No 262
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=79.44 E-value=10 Score=27.81 Aligned_cols=65 Identities=18% Similarity=0.034 Sum_probs=43.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccC---CcccEEEEEcCCcHHHHHhcCCcccEEEe--CCE---EEEecCCCHHHHHH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYL---DRVHLEEVYLTPESYWYKLYRYEIPVLFL--GGR---FVCRNRFNAQILMS 137 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~---~e~~~eeIDId~d~el~~~y~~~VPVl~i--dGe---~i~~~r~d~e~L~~ 137 (170)
+..+.+|+.+. ++|+.++++|+++. +.+++++.|.++ ..|.+.+ +|+ ..++|-+.-.++..
T Consensus 20 pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~----------~~P~~~i~~~~~~~gIrF~GiP~GhEf~S 88 (94)
T cd02974 20 PVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE----------RKPSFSINRPGEDTGIRFAGIPMGHEFTS 88 (94)
T ss_pred CEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC----------CCCEEEEecCCCcccEEEEecCCchhHHH
Confidence 44577898888 99999999998754 346777666532 4785544 432 33566666667766
Q ss_pred HHHh
Q psy17234 138 NECI 141 (170)
Q Consensus 138 ~L~~ 141 (170)
.+.+
T Consensus 89 lila 92 (94)
T cd02974 89 LVLA 92 (94)
T ss_pred HHHH
Confidence 6654
No 263
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=79.33 E-value=3.4 Score=32.27 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=23.6
Q ss_pred CeEEEEc-CCCCchHHHHHHHHhccCC-----cccEEEEEcCCc
Q psy17234 67 PMLNLFT-KDPCPLCDELKLELTPYLD-----RVHLEEVYLTPE 104 (170)
Q Consensus 67 ~~VtLYT-k~~CplCd~Ak~~L~~l~~-----e~~~eeIDId~d 104 (170)
..|..|. ..|||.|......|.++.. ++.+..|..|..
T Consensus 31 ~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~ 74 (173)
T cd03015 31 WVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSH 74 (173)
T ss_pred EEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCH
Confidence 3444454 7899999987777765422 245555555443
No 264
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=78.70 E-value=11 Score=28.91 Aligned_cols=61 Identities=5% Similarity=-0.054 Sum_probs=45.9
Q ss_pred ccCCc-ccEEEEEcCCcHHHHHhcCC---cccEEEe-C---CEEE-EecCCCHHHHHHHHHhccccchhc
Q psy17234 89 PYLDR-VHLEEVYLTPESYWYKLYRY---EIPVLFL-G---GRFV-CRNRFNAQILMSNECIFQCQEVTM 149 (170)
Q Consensus 89 ~l~~e-~~~eeIDId~d~el~~~y~~---~VPVl~i-d---Ge~i-~~~r~d~e~L~~~L~~~~~~~~~~ 149 (170)
++.+. +.|..+|.++...+.+.++. ..|.+.+ + +++. ..+.++.+.|.+.+.++..-.+.+
T Consensus 52 ~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~ 121 (130)
T cd02983 52 KFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRGPT 121 (130)
T ss_pred HhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCccc
Confidence 34555 89999999999888888873 5896654 2 3554 557899999999999888766643
No 265
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=78.33 E-value=3.9 Score=35.40 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=52.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCc---ccEEEEEcCCcHHHHHhcCC-cccEEE--eCCEEE---------EecCC
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDR---VHLEEVYLTPESYWYKLYRY-EIPVLF--LGGRFV---------CRNRF 130 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e---~~~eeIDId~d~el~~~y~~-~VPVl~--idGe~i---------~~~r~ 130 (170)
..-|+.+..++++-|..+-..|..++.. +.|..|..+.-+ +...|.. .+|.|+ .+|+.+ ....|
T Consensus 147 ~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df 225 (265)
T PF02114_consen 147 TWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDF 225 (265)
T ss_dssp -EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT-
T ss_pred cEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCC
Confidence 3458889999999999999999987544 678888776544 5566764 689664 488765 22357
Q ss_pred CHHHHHHHHHhccc
Q psy17234 131 NAQILMSNECIFQC 144 (170)
Q Consensus 131 d~e~L~~~L~~~~~ 144 (170)
+.+.|+.+|...+.
T Consensus 226 ~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 226 FTEDLEAFLIEYGV 239 (265)
T ss_dssp -HHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHcCC
Confidence 78888888876554
No 266
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=77.36 E-value=3.7 Score=29.77 Aligned_cols=68 Identities=19% Similarity=0.133 Sum_probs=41.7
Q ss_pred EEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcH--HHHHhcCC------cccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 71 LFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPES--YWYKLYRY------EIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 71 LYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~--el~~~y~~------~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
||--..||+|....+.+.+....-.++-+|+..++ ++.+.++. +.-++..+|+.+. ...+.+...+..
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~---~G~~A~~~l~~~ 76 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGERVY---RGSDAVLRLLRR 76 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCCEEE---EcHHHHHHHHHH
Confidence 35567899999999999987544578888885543 33444442 2333344776332 344555555443
No 267
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=77.00 E-value=2.8 Score=31.44 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=27.0
Q ss_pred HHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 107 WYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 107 l~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
+.+.++ ..+|.+++||+.+ .+..+.++|.+.|++
T Consensus 128 ~~~~~~i~~tPt~~inG~~~-~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 128 LARQLGITGTPTFFINGKYV-VGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHT-SSSSEEEETTCEE-ETTTSHHHHHHHHHH
T ss_pred HHHHcCCccccEEEECCEEe-CCCCCHHHHHHHHcC
Confidence 334455 4799999999996 578999999999864
No 268
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=76.59 E-value=3.8 Score=31.65 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=46.5
Q ss_pred CCchHHHHHHHHhcc---CCcccEEEEEcCCc-HHHHHhcC---CcccEEEeCCEE-E-------Ee--cCCCHHHHHHH
Q psy17234 76 PCPLCDELKLELTPY---LDRVHLEEVYLTPE-SYWYKLYR---YEIPVLFLGGRF-V-------CR--NRFNAQILMSN 138 (170)
Q Consensus 76 ~CplCd~Ak~~L~~l---~~e~~~eeIDId~d-~el~~~y~---~~VPVl~idGe~-i-------~~--~r~d~e~L~~~ 138 (170)
.||.|-..+-+|..+ ...++++.||-..+ .++.+.-+ ...|||+.++.. . -. ---|.+.|...
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 499999999999964 44589999999998 45555554 579999875322 1 00 11466888888
Q ss_pred HHh
Q psy17234 139 ECI 141 (170)
Q Consensus 139 L~~ 141 (170)
|..
T Consensus 103 La~ 105 (112)
T PF11287_consen 103 LAE 105 (112)
T ss_pred HHH
Confidence 764
No 269
>KOG1390|consensus
Probab=75.31 E-value=0.58 Score=42.52 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=17.4
Q ss_pred eeecCCcceeeehhccccc
Q psy17234 14 FITSQRKPMLNLFTKDLKA 32 (170)
Q Consensus 14 ~~~~~~~ri~~~L~~~L~~ 32 (170)
-||.+|+||++||+|.|++
T Consensus 353 PlG~SGaRi~~tL~~~L~~ 371 (396)
T KOG1390|consen 353 PLGMSGARILVTLLHTLEQ 371 (396)
T ss_pred CcCCcchhHHHHHHHHHHh
Confidence 3789999999999999986
No 270
>KOG0191|consensus
Probab=75.17 E-value=7.7 Score=34.42 Aligned_cols=81 Identities=17% Similarity=0.113 Sum_probs=53.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCC------cccEEEEEcCCcHHHHHhcCC-cccEE--EeCCEE---EEecCCCH
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLD------RVHLEEVYLTPESYWYKLYRY-EIPVL--FLGGRF---VCRNRFNA 132 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~------e~~~eeIDId~d~el~~~y~~-~VPVl--~idGe~---i~~~r~d~ 132 (170)
....++.|..|||++|.......+++.. .+.+-.+|.+....+..++.. .-|.+ |-+|.. ...+.-+.
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~ 241 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDS 241 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccH
Confidence 3456899999999999999777665432 245555555545666667664 45633 444433 24456778
Q ss_pred HHHHHHHHhcccc
Q psy17234 133 QILMSNECIFQCQ 145 (170)
Q Consensus 133 e~L~~~L~~~~~~ 145 (170)
+.|.+++.....+
T Consensus 242 ~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 242 DSIVSFVEKKERR 254 (383)
T ss_pred HHHHHHHHhhcCC
Confidence 8888888776666
No 271
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=73.86 E-value=24 Score=26.84 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=53.4
Q ss_pred eEEEEcCCCCchHHHHHHHHhcc----CCcccEEEEEcCCcHHHHHhcCC---cccEEEe-C---CEEE--EecCCCHHH
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPY----LDRVHLEEVYLTPESYWYKLYRY---EIPVLFL-G---GRFV--CRNRFNAQI 134 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l----~~e~~~eeIDId~d~el~~~y~~---~VPVl~i-d---Ge~i--~~~r~d~e~ 134 (170)
.+.+|........+..+..|+.+ ...+.|..+|.+..+++.+.++. .+|++.+ + ++.. ....++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~ 177 (184)
T PF13848_consen 98 VLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPES 177 (184)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHH
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHH
Confidence 57777777777778777776654 34489999999987888888863 6997763 3 4432 356788999
Q ss_pred HHHHHH
Q psy17234 135 LMSNEC 140 (170)
Q Consensus 135 L~~~L~ 140 (170)
|.++|.
T Consensus 178 i~~Fl~ 183 (184)
T PF13848_consen 178 IEKFLN 183 (184)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988875
No 272
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=71.99 E-value=5.6 Score=28.30 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=36.0
Q ss_pred eEEEEcCCCCchHHHHHHHHhc----c-CCcccEEEEEcCCcHHHHHhcCC-cccEEE
Q psy17234 68 MLNLFTKDPCPLCDELKLELTP----Y-LDRVHLEEVYLTPESYWYKLYRY-EIPVLF 119 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~----l-~~e~~~eeIDId~d~el~~~y~~-~VPVl~ 119 (170)
.+.||-...=|.=.++.+.|.+ . ..+++++.|||.++|++++.++. -+|.++
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence 3556666665655555555443 2 34589999999999999999885 467554
No 273
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=71.53 E-value=9.3 Score=30.33 Aligned_cols=60 Identities=17% Similarity=0.309 Sum_probs=47.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCc----ccEEEEEcCCcHHHHHhcCCccc--EEEe-CCEEE
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDR----VHLEEVYLTPESYWYKLYRYEIP--VLFL-GGRFV 125 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e----~~~eeIDId~d~el~~~y~~~VP--Vl~i-dGe~i 125 (170)
..-|.-|+++|=|.|-..-+.|.+.... ..+..+||++-|++.+.|....| |.|. .++++
T Consensus 21 rvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~dP~tvmFF~rnkhm 87 (133)
T PF02966_consen 21 RVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELYDPCTVMFFFRNKHM 87 (133)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-SSEEEEEEETTEEE
T ss_pred eEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccCCCeEEEEEecCeEE
Confidence 3446789999999999999999875433 47889999999999889988789 5555 88876
No 274
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=71.00 E-value=32 Score=27.33 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=39.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc--HHHHHhcCC---c-ccEEEeC-CEEE
Q psy17234 65 RKPMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE--SYWYKLYRY---E-IPVLFLG-GRFV 125 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d--~el~~~y~~---~-VPVl~id-Ge~i 125 (170)
..+..+++.--.|++|....++|.+.-.+=.++-.++..+ -++.+.++. . .=+++++ |+.+
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~ 73 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLL 73 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceE
Confidence 3456677777899999999999998644445555555555 456666653 2 2356664 4543
No 275
>KOG2603|consensus
Probab=70.76 E-value=9.2 Score=34.49 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=54.7
Q ss_pred CeEEEEcCC----CCchHHHHHHHHhccC------C------cccEEEEEcCCcHHHHHhcCC-cccEEEeC----C---
Q psy17234 67 PMLNLFTKD----PCPLCDELKLELTPYL------D------RVHLEEVYLTPESYWYKLYRY-EIPVLFLG----G--- 122 (170)
Q Consensus 67 ~~VtLYTk~----~CplCd~Ak~~L~~l~------~------e~~~eeIDId~d~el~~~y~~-~VPVl~id----G--- 122 (170)
.-|++||.- .|.+|..+.+...-+. . .+=|-+||.|+.++.++..+. .+|-+++= |
T Consensus 62 s~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 62 SLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred EEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcccCCCeEEEeCCCccccc
Confidence 348888864 6999999998765321 1 145889999999999999884 79955431 1
Q ss_pred ---EE-EEecCCCHHHHHHHHHhccccc
Q psy17234 123 ---RF-VCRNRFNAQILMSNECIFQCQE 146 (170)
Q Consensus 123 ---e~-i~~~r~d~e~L~~~L~~~~~~~ 146 (170)
+. ...-+++.|++.+++++++.=.
T Consensus 142 ~s~~~d~~~~g~~Ae~iaqfv~~~tkv~ 169 (331)
T KOG2603|consen 142 RSDQMDQQDLGFEAEQIAQFVADRTKVN 169 (331)
T ss_pred cCccchhhhcchhHHHHHHHHHHhhhhe
Confidence 11 1223466888888888776533
No 276
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=70.08 E-value=11 Score=30.77 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=42.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhcc----CC-cccEEEEEcCC-------c-H---HHHH-hcCCcccEE--E-eCCE
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPY----LD-RVHLEEVYLTP-------E-S---YWYK-LYRYEIPVL--F-LGGR 123 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l----~~-e~~~eeIDId~-------d-~---el~~-~y~~~VPVl--~-idGe 123 (170)
+..+.|+.+..+||++|.... .|+++ .. ++.+.-+..++ + . ++.+ .|+...|++ . ++|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q~~-~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~Fpv~~k~dvnG~ 102 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQYE-QLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVNGE 102 (183)
T ss_pred CCCEEEEEEEeCCCCCcHHHH-HHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCCceeEEEEccCCC
Confidence 445678999999999997533 44443 22 25566665532 2 2 3443 577778876 2 3554
Q ss_pred EEEecCCCHHHHHHHHHhcc
Q psy17234 124 FVCRNRFNAQILMSNECIFQ 143 (170)
Q Consensus 124 ~i~~~r~d~e~L~~~L~~~~ 143 (170)
. ..-|.++|.+-.
T Consensus 103 ~-------~~pl~~~Lk~~~ 115 (183)
T PRK10606 103 G-------RHPLYQKLIAAA 115 (183)
T ss_pred C-------CCHHHHHHHHhC
Confidence 3 345667776433
No 277
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=70.02 E-value=41 Score=25.24 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=47.2
Q ss_pred EEEEcCC----CCchHHHHH---HHHhccCCcccEEEEEcCCcH--HHHHhcC-CcccEE-Ee---CCEE----EEecCC
Q psy17234 69 LNLFTKD----PCPLCDELK---LELTPYLDRVHLEEVYLTPES--YWYKLYR-YEIPVL-FL---GGRF----VCRNRF 130 (170)
Q Consensus 69 VtLYTk~----~CplCd~Ak---~~L~~l~~e~~~eeIDId~d~--el~~~y~-~~VPVl-~i---dGe~----i~~~r~ 130 (170)
++.+..+ ||.+|+.+- ++.+-++..+-+-..|++..+ ++...++ ...|.+ ++ +++. ...|..
T Consensus 21 lVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~ 100 (116)
T cd02991 21 LVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLI 100 (116)
T ss_pred EEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCC
Confidence 4444555 688885331 111122334778888999884 4556666 478943 44 5432 267899
Q ss_pred CHHHHHHHHHhcc
Q psy17234 131 NAQILMSNECIFQ 143 (170)
Q Consensus 131 d~e~L~~~L~~~~ 143 (170)
++++|.+.|..+.
T Consensus 101 ~~~~ll~~L~~~~ 113 (116)
T cd02991 101 QPEDLINRLTFIM 113 (116)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998654
No 278
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=68.68 E-value=4.8 Score=31.14 Aligned_cols=28 Identities=11% Similarity=0.208 Sum_probs=23.4
Q ss_pred CcccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 113 YEIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 113 ~~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
..||.+++||+....|.-+.+.|++.|.
T Consensus 166 ~GvP~~vv~g~~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 166 FGVPTFVVNGKYRFFGADRLDELEDALQ 193 (193)
T ss_dssp SSSSEEEETTTEEEESCSSHHHHHHHH-
T ss_pred cccCEEEECCEEEEECCCCHHHHHHHhC
Confidence 5799999999977778889999988873
No 279
>PRK15000 peroxidase; Provisional
Probab=68.51 E-value=38 Score=27.61 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=52.7
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCc-----ccEEEEEcCCc---HHH-------------------------HHhcCC--
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDR-----VHLEEVYLTPE---SYW-------------------------YKLYRY-- 113 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e-----~~~eeIDId~d---~el-------------------------~~~y~~-- 113 (170)
|.+|-..||+.|..--..|.++..+ +++.-+.+|.. .+| .+.|+.
T Consensus 39 L~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~ 118 (200)
T PRK15000 39 LFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEH 118 (200)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCcc
Confidence 4444456899999876666654222 45555555543 122 222442
Q ss_pred -----cccEEE-e--CCEEEEe------cCCCHHHHHHHHHhccc----cchhcccCCCCcccce
Q psy17234 114 -----EIPVLF-L--GGRFVCR------NRFNAQILMSNECIFQC----QEVTMFNEAPRMKTIT 160 (170)
Q Consensus 114 -----~VPVl~-i--dGe~i~~------~r~d~e~L~~~L~~~~~----~~~~~~~~~~~~~~~~ 160 (170)
.+|..| + +|+.... -+-+-+++.+.|++++- .+++-.|--|.-++|.
T Consensus 119 ~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~~~~~~~~~~p~~w~~g~~~~~ 183 (200)
T PRK15000 119 PDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQFHEEHGDVCPAQWEKGKEGMN 183 (200)
T ss_pred CCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhhhHHhcCCCcCCCCCCCCceec
Confidence 367444 3 4543311 12378889999987764 5677777666666554
No 280
>KOG3414|consensus
Probab=67.98 E-value=12 Score=29.79 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=52.7
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCc----ccEEEEEcCCcHHHHHhcCCc-cc-EE-EeCCEEE-----------EecC
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDR----VHLEEVYLTPESYWYKLYRYE-IP-VL-FLGGRFV-----------CRNR 129 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e----~~~eeIDId~d~el~~~y~~~-VP-Vl-~idGe~i-----------~~~r 129 (170)
-|.=|+++|=|.|-..-++|.+.... ..+.-+||++-+++.+.|..+ .| ++ |.+++++ .-|.
T Consensus 26 vViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmkiD~gtgdn~Kin~~ 105 (142)
T KOG3414|consen 26 VVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMKIDLGTGDNNKINFA 105 (142)
T ss_pred EEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEEEeeCCCCCceEEEE
Confidence 46669999999999999999975433 367788999889999999864 44 33 5577664 1122
Q ss_pred -CCHHHHHHHHHh
Q psy17234 130 -FNAQILMSNECI 141 (170)
Q Consensus 130 -~d~e~L~~~L~~ 141 (170)
-+++++...++.
T Consensus 106 ~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 106 FEDKQEFIDIIET 118 (142)
T ss_pred eccHHHHHHHHHH
Confidence 356666666653
No 281
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=67.07 E-value=27 Score=32.17 Aligned_cols=94 Identities=14% Similarity=0.054 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCCCchHHHHHHH------Hh---ccC--CcccEEEEEcCCcHHHHHhcCC-ccc--EEEeCCEEE-Eec
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLE------LT---PYL--DRVHLEEVYLTPESYWYKLYRY-EIP--VLFLGGRFV-CRN 128 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~------L~---~l~--~e~~~eeIDId~d~el~~~y~~-~VP--Vl~idGe~i-~~~ 128 (170)
+-.+.+.+|..|.=..=...+++ |+ ++. .++.|-.||+..+.+++++.+. .++ -+|.+|..+ ..|
T Consensus 50 kyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~~IEydG 129 (383)
T PF01216_consen 50 KYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGEVIEYDG 129 (383)
T ss_dssp H-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--STTEEEEEETTEEEEE-S
T ss_pred hhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccccCcEEEEECCcEEEecC
Confidence 33556777877764333332222 11 111 3389999999999999999984 477 446688777 667
Q ss_pred CCCHHHHHHHHHhccccchhcccCCCCcc
Q psy17234 129 RFNAQILMSNECIFQCQEVTMFNEAPRMK 157 (170)
Q Consensus 129 r~d~e~L~~~L~~~~~~~~~~~~~~~~~~ 157 (170)
.++++-|..+|.....--|...|.....+
T Consensus 130 ~~saDtLVeFl~dl~edPVeiIn~~~e~~ 158 (383)
T PF01216_consen 130 ERSADTLVEFLLDLLEDPVEIINNKHELK 158 (383)
T ss_dssp --SHHHHHHHHHHHHSSSEEEE-SHHHHH
T ss_pred ccCHHHHHHHHHHhcccchhhhcChhhhh
Confidence 89999999999998888888777654443
No 282
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=65.15 E-value=59 Score=28.11 Aligned_cols=92 Identities=13% Similarity=0.018 Sum_probs=53.7
Q ss_pred EEEEcCCCCchHHHHHHHHhccCC-----cccEEEEEcCCc----------------------------HHHHHhcCC--
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLD-----RVHLEEVYLTPE----------------------------SYWYKLYRY-- 113 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~-----e~~~eeIDId~d----------------------------~el~~~y~~-- 113 (170)
+.+|-..|||.|..--..+.++.. ++++.-|.+|.. .++.+.|+.
T Consensus 103 L~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~ 182 (261)
T PTZ00137 103 LVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLR 182 (261)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCC
Confidence 334468999999985555543221 144555555442 233344553
Q ss_pred ----cccEEE-e--CCEEEEe------cCCCHHHHHHHHHhccc----cchhcccCCCCcccce
Q psy17234 114 ----EIPVLF-L--GGRFVCR------NRFNAQILMSNECIFQC----QEVTMFNEAPRMKTIT 160 (170)
Q Consensus 114 ----~VPVl~-i--dGe~i~~------~r~d~e~L~~~L~~~~~----~~~~~~~~~~~~~~~~ 160 (170)
.+|.+| + +|+.... .+-+.+++.+.|++++- .+++-.|--|.-.+|.
T Consensus 183 ~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~~~~~g~~cPanW~~g~~~~~ 246 (261)
T PTZ00137 183 DEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQFAEKTGNVCPVNWKQGDQAMK 246 (261)
T ss_pred cCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhchhhhcCCCcCCCCCcCCceec
Confidence 357444 4 4654422 23488999999998874 5777777666655554
No 283
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=64.94 E-value=12 Score=29.99 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=16.5
Q ss_pred CCeEEEEc-CCCCchHHHHHHHHhc
Q psy17234 66 KPMLNLFT-KDPCPLCDELKLELTP 89 (170)
Q Consensus 66 ~~~VtLYT-k~~CplCd~Ak~~L~~ 89 (170)
...|..|. ..|||.|...-..|.+
T Consensus 32 k~vvl~F~p~~~cp~C~~el~~l~~ 56 (187)
T TIGR03137 32 KWSVFFFYPADFTFVCPTELEDLAD 56 (187)
T ss_pred CEEEEEEECCCcCCcCHHHHHHHHH
Confidence 34455555 8999999986666653
No 284
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=64.81 E-value=11 Score=30.67 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=23.5
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCc-----ccEEEEEcCC
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDR-----VHLEEVYLTP 103 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e-----~~~eeIDId~ 103 (170)
|..|..+|||.|..--..|.++..+ +.+.-|.+|.
T Consensus 30 lf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 30 LFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4468888999999877766654322 4566666554
No 285
>KOG2501|consensus
Probab=64.22 E-value=9.4 Score=31.01 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=20.7
Q ss_pred EEEEcCCCCchHHHH----HHHHhccCCc---ccEEEEEcCCc
Q psy17234 69 LNLFTKDPCPLCDEL----KLELTPYLDR---VHLEEVYLTPE 104 (170)
Q Consensus 69 VtLYTk~~CplCd~A----k~~L~~l~~e---~~~eeIDId~d 104 (170)
...|+..|||.|..- +++.+++..+ |++.-|+-|.+
T Consensus 37 ~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~ 79 (157)
T KOG2501|consen 37 GLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRD 79 (157)
T ss_pred EEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCC
Confidence 334566799999874 4444444433 55555555544
No 286
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=62.49 E-value=25 Score=26.18 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=43.3
Q ss_pred hHHHHHHHHhccC-CcccEEEEEcCCcHHHHHhcCC---c--ccEEEe---CC-EEEEecCC-CHHHHHHHHHhc
Q psy17234 79 LCDELKLELTPYL-DRVHLEEVYLTPESYWYKLYRY---E--IPVLFL---GG-RFVCRNRF-NAQILMSNECIF 142 (170)
Q Consensus 79 lCd~Ak~~L~~l~-~e~~~eeIDId~d~el~~~y~~---~--VPVl~i---dG-e~i~~~r~-d~e~L~~~L~~~ 142 (170)
+....+++-+++. +.+.|..+|.++.....+-++. . .|++.+ ++ ++.....+ +.+.|++.+.+|
T Consensus 36 ~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 36 WRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred HHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 5666666666677 5788999999877655566653 4 997765 23 33333445 888999888776
No 287
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=62.18 E-value=27 Score=32.17 Aligned_cols=66 Identities=18% Similarity=0.050 Sum_probs=43.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccC---CcccEEEEEcCCcHHHHHhcCCcccEEEe--CC---EEEEecCCCHHHHHH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYL---DRVHLEEVYLTPESYWYKLYRYEIPVLFL--GG---RFVCRNRFNAQILMS 137 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~---~e~~~eeIDId~d~el~~~y~~~VPVl~i--dG---e~i~~~r~d~e~L~~ 137 (170)
+..+.+|+. .|++|++++++|+++. +.+++++.+.+ ...|.+.+ +| ...+++-+.-.++..
T Consensus 20 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s 88 (517)
T PRK15317 20 PIELVASLD-DSEKSAELKELLEEIASLSDKITVEEDSLD----------VRKPSFSITRPGEDTGVRFAGIPMGHEFTS 88 (517)
T ss_pred CEEEEEEeC-CCchHHHHHHHHHHHHHhCCceEEEEccCC----------CCCCEEEEEcCCccceEEEEecCccHHHHH
Confidence 445777877 7999999999999754 33666665432 24786544 44 234666677777777
Q ss_pred HHHhc
Q psy17234 138 NECIF 142 (170)
Q Consensus 138 ~L~~~ 142 (170)
.+.+.
T Consensus 89 ~i~~i 93 (517)
T PRK15317 89 LVLAL 93 (517)
T ss_pred HHHHH
Confidence 76543
No 288
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=60.57 E-value=15 Score=27.05 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=39.8
Q ss_pred CeEEEEcCCCCchHHHHHHHHhcc-----CCcccEEEEEcCCcHHHHHhcCC-cccEEE
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPY-----LDRVHLEEVYLTPESYWYKLYRY-EIPVLF 119 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l-----~~e~~~eeIDId~d~el~~~y~~-~VPVl~ 119 (170)
..+.+|-...=|.-.++.+.|.++ .+.++++.|||.++|++++.++. -+|.++
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLI 62 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLS 62 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHh
Confidence 346777777777777776666543 33489999999999999999985 467554
No 289
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=59.80 E-value=29 Score=32.09 Aligned_cols=66 Identities=15% Similarity=0.053 Sum_probs=42.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccC---CcccEEEEEcCCcHHHHHhcCCcccEEEe--CCE---EEEecCCCHHHHHH
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYL---DRVHLEEVYLTPESYWYKLYRYEIPVLFL--GGR---FVCRNRFNAQILMS 137 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~---~e~~~eeIDId~d~el~~~y~~~VPVl~i--dGe---~i~~~r~d~e~L~~ 137 (170)
+..+.+|+. .|++|++++++|+++. +.+++++.|.+. ...|.+.+ +|+ ..+++-+.-.++..
T Consensus 20 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~---------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s 89 (515)
T TIGR03140 20 PVTLVLSAG-SHEKSKELLELLDEIASLSDKISLTQNTADT---------LRKPSFTILRDGADTGIRFAGIPGGHEFTS 89 (515)
T ss_pred CEEEEEEeC-CCchhHHHHHHHHHHHHhCCCeEEEEecCCc---------CCCCeEEEecCCcccceEEEecCCcHHHHH
Confidence 345777877 6999999999998754 347777766443 23585433 554 33556666666666
Q ss_pred HHHh
Q psy17234 138 NECI 141 (170)
Q Consensus 138 ~L~~ 141 (170)
.+.+
T Consensus 90 ~i~~ 93 (515)
T TIGR03140 90 LVLA 93 (515)
T ss_pred HHHH
Confidence 6654
No 290
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=58.45 E-value=8.3 Score=29.77 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchHHHHHHHHhccC
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYL 91 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~ 91 (170)
+|++|.-..||+|-.+...|.++.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~ 24 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLR 24 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHH
Confidence 589999999999999998888653
No 291
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=58.09 E-value=12 Score=27.37 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=24.2
Q ss_pred HHHhcC-CcccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 107 WYKLYR-YEIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 107 l~~~y~-~~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
+..+++ ..+|.+++||+. ..|..+.+.|++.|+
T Consensus 121 ~~~~~gi~gtPt~~v~g~~-~~G~~~~~~l~~~i~ 154 (154)
T cd03023 121 LARALGITGTPAFIIGDTV-IPGAVPADTLKEAID 154 (154)
T ss_pred HHHHcCCCcCCeEEECCEE-ecCCCCHHHHHHHhC
Confidence 334455 469999999985 457788899888763
No 292
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=58.09 E-value=13 Score=29.12 Aligned_cols=27 Identities=7% Similarity=0.374 Sum_probs=23.8
Q ss_pred CcccEEEeCCEEEEecCCCHHHHHHHH
Q psy17234 113 YEIPVLFLGGRFVCRNRFNAQILMSNE 139 (170)
Q Consensus 113 ~~VPVl~idGe~i~~~r~d~e~L~~~L 139 (170)
..+|.+++||+....+..+.+.+.+.|
T Consensus 174 ~G~Pt~vv~g~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 174 SGVPFFVFNGKYAVSGAQPPEVFLQAL 200 (201)
T ss_pred CcCCEEEECCeEeecCCCCHHHHHHHh
Confidence 479999999998888999999998876
No 293
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=57.77 E-value=6.3 Score=31.32 Aligned_cols=44 Identities=9% Similarity=-0.062 Sum_probs=32.8
Q ss_pred ccccccccceeeeecCCcceee------ehhccccc-cceeEE-EeeCCCCc
Q psy17234 3 VLLEKLPVKSTFITSQRKPMLN------LFTKDLKA-HQKGIV-VYNTPEST 46 (170)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ri~~------~L~~~L~~-g~~G~a-iCnGgG~~ 46 (170)
.+..+=+|+-+|++.+|.+.-+ +|+..|+. +..++. .|+|.|.+
T Consensus 29 ~~~~~g~v~I~~~~~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~C 80 (143)
T PTZ00490 29 LYSTPGKVKVCVKKRDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQC 80 (143)
T ss_pred eccCCCcEEEEEEcCCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEe
Confidence 3444557899999999976544 38888876 678888 99988763
No 294
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=54.02 E-value=22 Score=24.64 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=22.7
Q ss_pred CcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 113 YEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 113 ~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
..=|++.+||+.+ .+.+++++.+.+++
T Consensus 45 ~~gP~v~V~~~~~--~~~t~~~i~~~~~~ 71 (72)
T cd03082 45 ERAPAALVGQRPV--DGATPAAVAAAVEA 71 (72)
T ss_pred CCCCeEEECCEEe--CCcCHHHHHHHHhc
Confidence 4689999999964 68999999998864
No 295
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=53.26 E-value=13 Score=30.25 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=44.9
Q ss_pred CCCeEEEEcCCCCchHH--HHHHHHhc-cCCcccEEEEEcCCcHHHHHhc--C--CcccEEEeCCEEEEecCCCHHHHHH
Q psy17234 65 RKPMLNLFTKDPCPLCD--ELKLELTP-YLDRVHLEEVYLTPESYWYKLY--R--YEIPVLFLGGRFVCRNRFNAQILMS 137 (170)
Q Consensus 65 ~~~~VtLYTk~~CplCd--~Ak~~L~~-l~~e~~~eeIDId~d~el~~~y--~--~~VPVl~idGe~i~~~r~d~e~L~~ 137 (170)
....|.+=+...|++.- +....|++ +. +.+-+.+-|-.=.|..-+ + -.-|++.+||+.. ++.+++++.+
T Consensus 76 Gr~~i~VC~~t~C~l~Gs~~l~~~l~~~lg--i~~gett~DG~ftl~~v~ClGaC~~AP~vmind~~~--~~lt~e~l~e 151 (160)
T COG1905 76 GRHHIRVCTGTACHLKGSEALLKALEKKLG--IKPGETTADGKFTLEPVECLGACGQAPVVMINDDVY--GRLTPEKLEE 151 (160)
T ss_pred CCeEEEEeCCcHHhhcChHHHHHHHHHHhC--CCCCCcCCCCeEEEeeeeeecccccCCEEEECCchh--ccCCHHHHHH
Confidence 35668888888888762 22222332 11 222222222211222222 2 3589999999986 4799999999
Q ss_pred HHHhccc
Q psy17234 138 NECIFQC 144 (170)
Q Consensus 138 ~L~~~~~ 144 (170)
.|.++.+
T Consensus 152 il~~~~~ 158 (160)
T COG1905 152 ILEKLKA 158 (160)
T ss_pred HHHHHhc
Confidence 9998764
No 296
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=53.22 E-value=24 Score=24.64 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=22.5
Q ss_pred CcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 113 YEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 113 ~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
..=|++.+||+. +.+.+++.+++.+++
T Consensus 53 ~~gP~~~v~~~~--~~~~~~e~i~~il~~ 79 (80)
T cd03081 53 ACSPAAMIDGEV--HGRVDPEKFDALLAE 79 (80)
T ss_pred CCCCEEEECCEE--ECCCCHHHHHHHHHc
Confidence 468999999985 468999999998864
No 297
>PRK09301 circadian clock protein KaiB; Provisional
Probab=53.19 E-value=30 Score=26.32 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=41.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhcc-----CCcccEEEEEcCCcHHHHHhcCC-cccEEEe
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPY-----LDRVHLEEVYLTPESYWYKLYRY-EIPVLFL 120 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l-----~~e~~~eeIDId~d~el~~~y~~-~VPVl~i 120 (170)
...+.||-...=|.=.++.+.|.++ .+.++++.|||.++|++++.++. -+|.++.
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK 66 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAK 66 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhh
Confidence 4467888888877777776666643 33489999999999999999985 4776543
No 298
>PF10926 DUF2800: Protein of unknown function (DUF2800); InterPro: IPR021229 This entry is represented by Bacteriophage APSE-1, protein 51. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.
Probab=52.78 E-value=10 Score=34.48 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=38.9
Q ss_pred CCccc-EEEeCCEEEEecCCCHHHHHHHHHhccccchhcccCCCCcccceeeeeec
Q psy17234 112 RYEIP-VLFLGGRFVCRNRFNAQILMSNECIFQCQEVTMFNEAPRMKTITQITKIE 166 (170)
Q Consensus 112 ~~~VP-Vl~idGe~i~~~r~d~e~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (170)
|..+| .-.+.|+-.-.|. |+++..+.|.+..--+-.||+ ..+.++||+.|+-
T Consensus 286 G~~~pG~KlVeGRs~R~~~-De~~a~~~L~~~g~~~~~iy~--~klis~t~~EKl~ 338 (372)
T PF10926_consen 286 GEEVPGWKLVEGRSNRKWT-DEDAAAEILKAAGYKEEEIYK--RKLISPTQMEKLL 338 (372)
T ss_pred CCccCCeeEEeccCccccC-CHHHHHHHHHHCCCCHHHccc--eeccCHHHHHHHh
Confidence 56788 4467777555555 999999999877666656787 6788999988764
No 299
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=52.39 E-value=73 Score=21.73 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=38.7
Q ss_pred CCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhcCCcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 75 DPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYRYEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 75 ~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y~~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
+..|+|-++..+|+-.+ ++|+.+ ...++.. .-.-.+|+|..||+.+ -|.+.|.+.|.+
T Consensus 14 s~sp~clk~~~~Lr~~~--~~~~v~-~~~n~~~--sp~gkLP~l~~~~~~i----~d~~~Ii~~L~~ 71 (73)
T cd03078 14 SVDPECLAVLAYLKFAG--APLKVV-PSNNPWR--SPTGKLPALLTSGTKI----SGPEKIIEYLRK 71 (73)
T ss_pred cCCHHHHHHHHHHHcCC--CCEEEE-ecCCCCC--CCCCccCEEEECCEEe----cChHHHHHHHHH
Confidence 35799999999999744 566444 2222211 1134599999999876 466888887764
No 300
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=50.66 E-value=9.4 Score=27.60 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=27.6
Q ss_pred hHHHHHHHHhc-----cCCcccEEEEEcCCcHHHHHhcCC-cccEE
Q psy17234 79 LCDELKLELTP-----YLDRVHLEEVYLTPESYWYKLYRY-EIPVL 118 (170)
Q Consensus 79 lCd~Ak~~L~~-----l~~e~~~eeIDId~d~el~~~y~~-~VPVl 118 (170)
--..|.+.++. +..+++++.|||.++|++++.++. -.|.+
T Consensus 10 ~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtL 55 (82)
T PF07689_consen 10 SSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTL 55 (82)
T ss_dssp HHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceE
Confidence 33455555554 334589999999999999988764 35543
No 301
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=50.55 E-value=10 Score=29.44 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHHHhccC
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYL 91 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~ 91 (170)
+|.+|+-+.||+|-.+.+.|+++.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~ 25 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLK 25 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHH
Confidence 589999999999999999988653
No 302
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=50.01 E-value=29 Score=23.82 Aligned_cols=28 Identities=11% Similarity=0.123 Sum_probs=22.5
Q ss_pred CcccEEEeCCEEEEecCCCHHHHHHHHHhc
Q psy17234 113 YEIPVLFLGGRFVCRNRFNAQILMSNECIF 142 (170)
Q Consensus 113 ~~VPVl~idGe~i~~~r~d~e~L~~~L~~~ 142 (170)
..=|++.++|. .+++.+++.+.+.++++
T Consensus 53 ~~gP~v~v~g~--~y~~vt~~~i~~i~~~~ 80 (80)
T cd03064 53 DLAPVMMINDD--VYGRLTPEKVDAILEAL 80 (80)
T ss_pred CCCCEEEECCE--EECCCCHHHHHHHHHhC
Confidence 36799999975 45789999999988753
No 303
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.77 E-value=10 Score=32.40 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccC
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYL 91 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~ 91 (170)
.+..+|.+|+-.-||+|-.-++.|+++.
T Consensus 3 ~~~i~I~v~sD~vCPwC~ig~~rL~ka~ 30 (225)
T COG2761 3 PMKIEIDVFSDVVCPWCYIGKRRLEKAL 30 (225)
T ss_pred CceEEEEEEeCCcCchhhcCHHHHHHHH
Confidence 3467899999999999998888888643
No 304
>KOG0868|consensus
Probab=48.76 E-value=43 Score=28.42 Aligned_cols=58 Identities=21% Similarity=0.341 Sum_probs=40.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc-HHHHHhcC-----CcccEEEeCCEEE
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE-SYWYKLYR-----YEIPVLFLGGRFV 125 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d-~el~~~y~-----~~VPVl~idGe~i 125 (170)
.+.+-=|.++.|.+=.+..-.|+.+ +++|.-||.-.+ .+.-..|+ ..||.+.+||..+
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~i--DYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl 68 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGI--DYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTL 68 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCC--CcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEe
Confidence 3445568899999987777777764 366667776555 22223332 4799999999887
No 305
>KOG0912|consensus
Probab=48.58 E-value=11 Score=34.36 Aligned_cols=87 Identities=21% Similarity=0.182 Sum_probs=58.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHhccC---------CcccEEEEEcCCcHHHHHhcCC-cccEE--EeCCEEEE---ecCC
Q psy17234 66 KPMLNLFTKDPCPLCDELKLELTPYL---------DRVHLEEVYLTPESYWYKLYRY-EIPVL--FLGGRFVC---RNRF 130 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L~~l~---------~e~~~eeIDId~d~el~~~y~~-~VPVl--~idGe~i~---~~r~ 130 (170)
....+=|+.+||++-.+++...++.. ..+.+-.||-+.+..+..+|.. .-|.+ |.||+-.- .+.=
T Consensus 14 elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~R 93 (375)
T KOG0912|consen 14 ELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQR 93 (375)
T ss_pred eEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccch
Confidence 34567799999999999888877532 1256888999999999999984 46754 67886542 2334
Q ss_pred CHHHHHHHHHhccccchhcccCCCC
Q psy17234 131 NAQILMSNECIFQCQEVTMFNEAPR 155 (170)
Q Consensus 131 d~e~L~~~L~~~~~~~~~~~~~~~~ 155 (170)
+-+.|.+.++. |+-+-.||.-.
T Consensus 94 sVeaL~efi~k---q~s~~i~Ef~s 115 (375)
T KOG0912|consen 94 SVEALIEFIEK---QLSDPINEFES 115 (375)
T ss_pred hHHHHHHHHHH---HhccHHHHHHh
Confidence 55666666553 34444555543
No 306
>KOG1391|consensus
Probab=48.34 E-value=4.4 Score=36.25 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=21.3
Q ss_pred cccccceee------eecCCcceeeehhcccccc
Q psy17234 6 EKLPVKSTF------ITSQRKPMLNLFTKDLKAH 33 (170)
Q Consensus 6 ~~~~~~~~~------~~~~~~ri~~~L~~~L~~g 33 (170)
+||.|..-- .+.+|+||.+||+|.|++.
T Consensus 338 sKlNVNGGAIALGHPLgaSGsRIt~HlVHEL~Rr 371 (396)
T KOG1391|consen 338 SKLNVNGGAIALGHPLGASGSRITAHLVHELRRR 371 (396)
T ss_pred hhccccCceeeccCccccCcchhhHHHHHHHHHc
Confidence 455555443 4688999999999999973
No 307
>PRK13599 putative peroxiredoxin; Provisional
Probab=44.35 E-value=39 Score=28.02 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=43.9
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCc-----ccEEEEEcCCc---------------------------HHHHHhcCC---
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDR-----VHLEEVYLTPE---------------------------SYWYKLYRY--- 113 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e-----~~~eeIDId~d---------------------------~el~~~y~~--- 113 (170)
+..|-.+|||.|..--..|.++..+ +.+.-+.+|.. .++.+.|+.
T Consensus 33 L~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~ 112 (215)
T PRK13599 33 LFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHP 112 (215)
T ss_pred EEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCcc
Confidence 4578888999999865555543222 44545554443 233344552
Q ss_pred -----cccEEEe---CCEEEEec------CCCHHHHHHHHHhccc
Q psy17234 114 -----EIPVLFL---GGRFVCRN------RFNAQILMSNECIFQC 144 (170)
Q Consensus 114 -----~VPVl~i---dGe~i~~~------r~d~e~L~~~L~~~~~ 144 (170)
.+|.+|+ +|+....+ +-+.+++.+.|++.+-
T Consensus 113 ~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~ 157 (215)
T PRK13599 113 GKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQT 157 (215)
T ss_pred CCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 4685554 46554222 2357888888887654
No 308
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=44.27 E-value=43 Score=27.18 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=51.3
Q ss_pred CeEEE-EcCCCCchHHHHHHHHhccCCc-----ccEEEEEcCCc-------------------------HHHHHhcCC--
Q psy17234 67 PMLNL-FTKDPCPLCDELKLELTPYLDR-----VHLEEVYLTPE-------------------------SYWYKLYRY-- 113 (170)
Q Consensus 67 ~~VtL-YTk~~CplCd~Ak~~L~~l~~e-----~~~eeIDId~d-------------------------~el~~~y~~-- 113 (170)
..|.. |-..|||.|..--..|.++..+ +.+.-|..|.. .++.+.|+.
T Consensus 33 ~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~ 112 (187)
T PRK10382 33 WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMR 112 (187)
T ss_pred eEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCc
Confidence 33444 4489999999855555543221 33444443332 344455653
Q ss_pred ---cc--cEEE-e--CCEEEEec------CCCHHHHHHHHHhccc-----cchhcccCCCCccc
Q psy17234 114 ---EI--PVLF-L--GGRFVCRN------RFNAQILMSNECIFQC-----QEVTMFNEAPRMKT 158 (170)
Q Consensus 114 ---~V--PVl~-i--dGe~i~~~------r~d~e~L~~~L~~~~~-----~~~~~~~~~~~~~~ 158 (170)
.+ |.+| + +|+....+ ..+.+++.+.|++++- -+++-.|-.|--.+
T Consensus 113 ~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~~~~~~g~~~p~~w~~~~~~ 176 (187)
T PRK10382 113 EDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEAT 176 (187)
T ss_pred ccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhhHhhcCCeEeCCCCCcCCcc
Confidence 34 7554 3 46543222 2488999999988874 35666665544333
No 309
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=43.79 E-value=33 Score=26.43 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=27.4
Q ss_pred CcccEEEeCCEEEEecCCCHHHHHHHHHhccc
Q psy17234 113 YEIPVLFLGGRFVCRNRFNAQILMSNECIFQC 144 (170)
Q Consensus 113 ~~VPVl~idGe~i~~~r~d~e~L~~~L~~~~~ 144 (170)
..+|-|++|++.+.+|--|-.+-.+.+.++..
T Consensus 82 ~k~PAVVfD~~~VVYG~tDV~~A~~~~~~~r~ 113 (114)
T PF07511_consen 82 TKYPAVVFDDRYVVYGETDVARALARIEQWRR 113 (114)
T ss_pred cccCEEEEcCCeEEecccHHHHHHHHHHHHhc
Confidence 36999999999999999999888888877754
No 310
>KOG3460|consensus
Probab=43.62 E-value=29 Score=25.67 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=24.5
Q ss_pred cEEEEEcCCc--HHHHHhcCCcccEEEeCCEEE
Q psy17234 95 HLEEVYLTPE--SYWYKLYRYEIPVLFLGGRFV 125 (170)
Q Consensus 95 ~~eeIDId~d--~el~~~y~~~VPVl~idGe~i 125 (170)
+...++++++ ++..+..++.+|++|+-|+-+
T Consensus 49 tit~~e~~E~~~e~~~k~~~r~~emlFvRGd~V 81 (91)
T KOG3460|consen 49 TITTVEIDEDTYEEIVKTTKRTVEMLFVRGDGV 81 (91)
T ss_pred eEEEeeccchhHHHHHhhhhcceeEEEEeCCeE
Confidence 5677888887 678888889999999966544
No 311
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=42.56 E-value=72 Score=23.52 Aligned_cols=55 Identities=7% Similarity=-0.052 Sum_probs=37.7
Q ss_pred cCCcccEEEEEcCCcHHHHHhcCC---cccEEEeCC-----EEE-EecCCCHHHHHHHHHhccc
Q psy17234 90 YLDRVHLEEVYLTPESYWYKLYRY---EIPVLFLGG-----RFV-CRNRFNAQILMSNECIFQC 144 (170)
Q Consensus 90 l~~e~~~eeIDId~d~el~~~y~~---~VPVl~idG-----e~i-~~~r~d~e~L~~~L~~~~~ 144 (170)
+...+.|..+|.+......+.++. +.|.+.+.+ ++. ...-++.+.|.+.+.++..
T Consensus 46 ~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 46 EKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred cCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 444478999999988666666663 599887643 222 3345788899998887653
No 312
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=42.15 E-value=37 Score=27.56 Aligned_cols=72 Identities=8% Similarity=0.093 Sum_probs=43.3
Q ss_pred CCeEEEEcCCCCchH--HHHHHHHhccCCcccEEEEEcCCcH--HH--HHhcC--CcccEEEeCCEEEEecCCCHHHHHH
Q psy17234 66 KPMLNLFTKDPCPLC--DELKLELTPYLDRVHLEEVYLTPES--YW--YKLYR--YEIPVLFLGGRFVCRNRFNAQILMS 137 (170)
Q Consensus 66 ~~~VtLYTk~~CplC--d~Ak~~L~~l~~e~~~eeIDId~d~--el--~~~y~--~~VPVl~idGe~i~~~r~d~e~L~~ 137 (170)
...|.+=+...|+.+ ++..+.|++. +.+..=..+.|- .| ..-.+ ..-|++.+||+. +++++++++.+
T Consensus 88 k~~I~VC~g~aC~~~G~~~ll~~l~~~---Lgi~~gett~DG~ftL~~~~ClG~C~~AP~~~Vn~~~--~~~lt~e~v~~ 162 (169)
T PRK07571 88 EHTCVVCTGTACYVKGSAAILEDLENE---LGIKAGETTADGKLSLLTARCLGACGIAPAVVFDGKV--AGKQTPESVLE 162 (169)
T ss_pred CEEEEEcCChHHHHCCcHHHHHHHHHH---hCCCCCCcCCCCeEEEEEecccCccCCCCeEEECCEE--eCCCCHHHHHH
Confidence 346777788889886 4444444431 111111122221 11 11223 468999999996 47999999999
Q ss_pred HHHhc
Q psy17234 138 NECIF 142 (170)
Q Consensus 138 ~L~~~ 142 (170)
.|..+
T Consensus 163 il~~~ 167 (169)
T PRK07571 163 KVQGW 167 (169)
T ss_pred HHHHH
Confidence 99876
No 313
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=41.95 E-value=1.8e+02 Score=24.29 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=51.7
Q ss_pred CCCCeEEEEcCC-----CCchHHHHHHHHhccC---C-cccEEEEEcCCcHHHHHh----cCCc-c--------------
Q psy17234 64 QRKPMLNLFTKD-----PCPLCDELKLELTPYL---D-RVHLEEVYLTPESYWYKL----YRYE-I-------------- 115 (170)
Q Consensus 64 ~~~~~VtLYTk~-----~CplCd~Ak~~L~~l~---~-e~~~eeIDId~d~el~~~----y~~~-V-------------- 115 (170)
+.+..|++|..+ .=++=..++++|+++. . .+.++.+|-+.+++..++ |+.. +
T Consensus 24 ~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~~ 103 (271)
T PF09822_consen 24 DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQIEIVDNGKASIVT 103 (271)
T ss_pred CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccceeeccccccccee
Confidence 445678888887 5566777888888653 3 499999999888655444 5421 1
Q ss_pred --cEEEe--CCEEEEecCCC-------HHHHHHHHHhcccc
Q psy17234 116 --PVLFL--GGRFVCRNRFN-------AQILMSNECIFQCQ 145 (170)
Q Consensus 116 --PVl~i--dGe~i~~~r~d-------~e~L~~~L~~~~~~ 145 (170)
+-+++ +++......++ +.+|.++|.+.+..
T Consensus 104 ~~~~~~v~~~~~~~~i~~~~~~~~~~~E~~lt~aI~~v~~~ 144 (271)
T PF09822_consen 104 VYGGIVVEYGDREEVIPFLDSMSEFNLEYELTSAIRRVTSD 144 (271)
T ss_pred ecCeEEEEECCeEEEeecccccccccHHHHHHHHHHHHhcc
Confidence 22221 33333333444 67888888777665
No 314
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=41.88 E-value=17 Score=30.19 Aligned_cols=62 Identities=19% Similarity=0.041 Sum_probs=36.3
Q ss_pred CCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhcCCccc-EEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 76 PCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYRYEIP-VLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 76 ~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y~~~VP-Vl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
+|++||....+=... ...+..+.+++=-+..+..+.... |++-+|++. ...+...|.+.|.+
T Consensus 35 ~C~~Cdt~~t~~~~~--~~~~~~~~~~~I~~~i~~~~~~~~~V~lTGGEP~--~~~~l~~Ll~~l~~ 97 (212)
T COG0602 35 RCPGCDTKYTWDFNY--GKPGTPMSADEILADIKSLGYKARGVSLTGGEPL--LQPNLLELLELLKR 97 (212)
T ss_pred CCCCCCChhhhcccc--cCCCCccCHHHHHHHHHhcCCCcceEEEeCCcCC--CcccHHHHHHHHHh
Confidence 699999776632211 123444444433333344444555 778899993 34567778888876
No 315
>PRK13191 putative peroxiredoxin; Provisional
Probab=41.58 E-value=40 Score=27.89 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=24.9
Q ss_pred EEEcCCCCchHHHHHHHHhccCCc-----ccEEEEEcCCc
Q psy17234 70 NLFTKDPCPLCDELKLELTPYLDR-----VHLEEVYLTPE 104 (170)
Q Consensus 70 tLYTk~~CplCd~Ak~~L~~l~~e-----~~~eeIDId~d 104 (170)
..|-.+|||.|..--..|.++..+ +++.-+.+|..
T Consensus 39 ff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~ 78 (215)
T PRK13191 39 FSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSN 78 (215)
T ss_pred EEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 478999999999977777754333 45666666655
No 316
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=40.59 E-value=57 Score=25.99 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=23.7
Q ss_pred CcccEEEeCCEEEEecCCCHHHHHHHHHhc
Q psy17234 113 YEIPVLFLGGRFVCRNRFNAQILMSNECIF 142 (170)
Q Consensus 113 ~~VPVl~idGe~i~~~r~d~e~L~~~L~~~ 142 (170)
..-|++.+||+. ++..+++++.+.|++.
T Consensus 127 ~~aP~~~in~~~--~~~lt~~~~~~il~~~ 154 (156)
T PRK05988 127 ACSPAAMLDGEV--HGRLDPQRLDALLAEA 154 (156)
T ss_pred CCCCeEEECCEE--eCCCCHHHHHHHHHHh
Confidence 358999999986 4789999999998764
No 317
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=40.08 E-value=57 Score=26.35 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHH-------hccCCcccEEEEEc
Q psy17234 66 KPMLNLFTKDPCPLCDELKLEL-------TPYLDRVHLEEVYL 101 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~Ak~~L-------~~l~~e~~~eeIDI 101 (170)
.+.|+-|..-.||+|......+ +.+..++.++.+.+
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 5679999999999999976543 23333445555444
No 318
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=38.51 E-value=14 Score=28.61 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=20.0
Q ss_pred EEEEcCCCCchHHHHHHHHhccC
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYL 91 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~ 91 (170)
|.+|+-.-||+|=.+.+.|+++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~ 23 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALA 23 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHH
Confidence 56899999999999999988754
No 319
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=38.39 E-value=74 Score=24.64 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=30.4
Q ss_pred CCeEEEEcCCCCchHHHH-HHHHhccCCc-----c-cEEEEEcCCc---HHHHHhcCC--cccEEE
Q psy17234 66 KPMLNLFTKDPCPLCDEL-KLELTPYLDR-----V-HLEEVYLTPE---SYWYKLYRY--EIPVLF 119 (170)
Q Consensus 66 ~~~VtLYTk~~CplCd~A-k~~L~~l~~e-----~-~~eeIDId~d---~el~~~y~~--~VPVl~ 119 (170)
..-|.+|-+.+||.|..- -..+.+...+ . .+.-+..|.. .+|.++++. ..|+|-
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLs 96 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLA 96 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEE
Confidence 345777788899999975 4444432222 3 2444554444 346666665 455443
No 320
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=38.26 E-value=79 Score=24.45 Aligned_cols=49 Identities=27% Similarity=0.383 Sum_probs=35.0
Q ss_pred CCCchHHHHHHHHhc-----------cCCcccEEEEEcCCcHHHHHhcCCcccEEEeCCEEE
Q psy17234 75 DPCPLCDELKLELTP-----------YLDRVHLEEVYLTPESYWYKLYRYEIPVLFLGGRFV 125 (170)
Q Consensus 75 ~~CplCd~Ak~~L~~-----------l~~e~~~eeIDId~d~el~~~y~~~VPVl~idGe~i 125 (170)
..|.-|..+.+.|.+ ++-++.++++.++++ ++...| ...|-+.+||..+
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-~~~~~~-~~S~~I~inG~pi 72 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-EFARQP-LESPTIRINGRPI 72 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-HHhhcc-cCCCeeeECCEeh
Confidence 489999877666554 333367888888775 444455 7789999999886
No 321
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.22 E-value=33 Score=33.83 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=36.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHh-------ccCCcccEEEEEcCCcHHHHHhcC--------C-ccc-EEEe--CCEEE
Q psy17234 67 PMLNLFTKDPCPLCDELKLELT-------PYLDRVHLEEVYLTPESYWYKLYR--------Y-EIP-VLFL--GGRFV 125 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~-------~l~~e~~~eeIDId~d~el~~~y~--------~-~VP-Vl~i--dGe~i 125 (170)
|-+.=.+-+|||+|....+.=- -++..|.-.+||=++.|.+-+.|. . .=| .||. ||+++
T Consensus 45 PIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 45 PILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGKPF 122 (667)
T ss_pred CEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCcee
Confidence 4455567789999987765411 123336777788888777766663 2 357 2332 77776
No 322
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=37.71 E-value=1.8e+02 Score=21.93 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=38.7
Q ss_pred cCCcccEEEEEcCCcHHHHHhcCCcccEEE--eC--CEEEEecC--CCHHHHHHHHHhccccchhccc
Q psy17234 90 YLDRVHLEEVYLTPESYWYKLYRYEIPVLF--LG--GRFVCRNR--FNAQILMSNECIFQCQEVTMFN 151 (170)
Q Consensus 90 l~~e~~~eeIDId~d~el~~~y~~~VPVl~--id--Ge~i~~~r--~d~e~L~~~L~~~~~~~~~~~~ 151 (170)
+..++.|-.++ ++++.++++...|.|+ .+ ++...+.. ++.+.|.+++....---|.-|+
T Consensus 19 ~~~~~~F~~~~---~~~~~~~~~~~~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t 83 (184)
T PF13848_consen 19 LKGDYQFGVTF---NEELAKKYGIKEPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPELT 83 (184)
T ss_dssp HTTTSEEEEEE----HHHHHHCTCSSSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEES
T ss_pred CcCCcEEEEEc---HHHHHHHhCCCCCcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccccc
Confidence 33335666555 6778888987779444 34 44555555 7999999999876655555554
No 323
>PRK13189 peroxiredoxin; Provisional
Probab=37.27 E-value=61 Score=26.89 Aligned_cols=88 Identities=15% Similarity=0.073 Sum_probs=48.6
Q ss_pred EEEEcCCCCchHHHHHHHHhccCCc-----ccEEEEEcCCc---------------------------HHHHHhcCC---
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLDR-----VHLEEVYLTPE---------------------------SYWYKLYRY--- 113 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~e-----~~~eeIDId~d---------------------------~el~~~y~~--- 113 (170)
|..|-.+|||.|..--..|.++..+ +.+.-+.+|+. .++.+.|+.
T Consensus 40 L~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~ 119 (222)
T PRK13189 40 LFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISP 119 (222)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCcc
Confidence 3467899999999755555543222 34444444433 223344442
Q ss_pred -----cccEE-EeC--CEEE--Ee----cCCCHHHHHHHHHhccc----cchhcccCCCCc
Q psy17234 114 -----EIPVL-FLG--GRFV--CR----NRFNAQILMSNECIFQC----QEVTMFNEAPRM 156 (170)
Q Consensus 114 -----~VPVl-~id--Ge~i--~~----~r~d~e~L~~~L~~~~~----~~~~~~~~~~~~ 156 (170)
.+|.+ ++| |... .. .+-+.+++.+.|++++- -+++-.|=-|--
T Consensus 120 ~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq~~~~~~~~~p~~w~~g~ 180 (222)
T PRK13189 120 GKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQTSDEKGVATPANWPPND 180 (222)
T ss_pred ccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhHhhcCcCcCCCCCCCC
Confidence 24634 444 5443 21 23467888899987765 355656655544
No 324
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=36.56 E-value=25 Score=28.37 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHhccC
Q psy17234 67 PMLNLFTKDPCPLCDELKLELTPYL 91 (170)
Q Consensus 67 ~~VtLYTk~~CplCd~Ak~~L~~l~ 91 (170)
|+|.+|+-.-||+|=-+++.|+++.
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~ 25 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQ 25 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHH
Confidence 4688999999999999999988653
No 325
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=34.25 E-value=68 Score=22.27 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=22.0
Q ss_pred CcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 113 YEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 113 ~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
..=|++.+||. .+++.+++.+.+.++.
T Consensus 53 ~~~P~v~V~~~--~y~~v~~~~v~~iv~~ 79 (80)
T cd03083 53 DQGPALLINNR--VFTRLTPGRIDQIAEL 79 (80)
T ss_pred CCCCeEEECCE--EECCCCHHHHHHHHhc
Confidence 46799999885 4689999999988864
No 326
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=34.19 E-value=35 Score=27.80 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=22.8
Q ss_pred CcccEEEeCCEEEEecCCCHHHHHHHHHhc
Q psy17234 113 YEIPVLFLGGRFVCRNRFNAQILMSNECIF 142 (170)
Q Consensus 113 ~~VPVl~idGe~i~~~r~d~e~L~~~L~~~ 142 (170)
...|.++++|. ...|..+.++|.+.+...
T Consensus 214 ~gTPt~~v~~~-~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 214 NGTPTFIVNGK-LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred CcCCeEEECCe-eecCCCCHHHHHHHHHHh
Confidence 35899999988 456788899999888743
No 327
>KOG4244|consensus
Probab=33.38 E-value=77 Score=28.11 Aligned_cols=64 Identities=17% Similarity=0.320 Sum_probs=42.7
Q ss_pred eEEEEcCC---CC----chHHHHHHHHhccCCcccEEEEEcCCcHHHHHhcCCcccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 68 MLNLFTKD---PC----PLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYRYEIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 68 ~VtLYTk~---~C----plCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y~~~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
.|-||.-+ .| |+|-+++-+|+... +.||.+|-... ...-.-++|-|..||+++ .|.+.+...|.
T Consensus 45 ~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~--IpYE~~~~~~~---~rSr~G~lPFIELNGe~i----aDS~~I~~~L~ 115 (281)
T KOG4244|consen 45 TVYLYQFPRTKTCPNLSPFCLKVETFLRAYD--IPYEIVDCSLK---RRSRNGTLPFIELNGEHI----ADSDLIEDRLR 115 (281)
T ss_pred eEEEEeccccCCCCCCChHHHHHHHHHHHhC--CCceeccccce---eeccCCCcceEEeCCeec----cccHHHHHHHH
Confidence 46666543 35 68999999999864 77877764432 111123699999999997 45555555554
No 328
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=32.87 E-value=65 Score=24.93 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=30.7
Q ss_pred HHHHHhcCCcccEEEeCCEEEEecCCCHHHHHHHHHhcccc
Q psy17234 105 SYWYKLYRYEIPVLFLGGRFVCRNRFNAQILMSNECIFQCQ 145 (170)
Q Consensus 105 ~el~~~y~~~VPVl~idGe~i~~~r~d~e~L~~~L~~~~~~ 145 (170)
+|+.+.-...-|+|.++|+.+ .+|++++++.++.+...
T Consensus 87 eEf~~L~~~~~~LV~~rg~WV---~ld~~~l~~~~~~~~~~ 124 (141)
T PF12419_consen 87 EEFEQLVEQKRPLVRFRGRWV---ELDPEELRRALAFLEKA 124 (141)
T ss_pred HHHHHHHHcCCCeEEECCEEE---EECHHHHHHHHHHHHhc
Confidence 455555667899999999998 59999999999876653
No 329
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=32.73 E-value=36 Score=26.58 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=18.1
Q ss_pred EEEEcCCCCchHHHHHHHHhc
Q psy17234 69 LNLFTKDPCPLCDELKLELTP 89 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~ 89 (170)
|.+|+-.-||+|-.+...|.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~ 21 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEK 21 (201)
T ss_pred CeEEecCcCccHHHHHHHHHH
Confidence 578999999999988888765
No 330
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=32.34 E-value=1e+02 Score=23.64 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=40.3
Q ss_pred HHHHHHHhccCCcccEEEEEcCCc-----HHHHHhcCCccc-EEEeCCEEEEecCCCHHHHHHHHHhccc
Q psy17234 81 DELKLELTPYLDRVHLEEVYLTPE-----SYWYKLYRYEIP-VLFLGGRFVCRNRFNAQILMSNECIFQC 144 (170)
Q Consensus 81 d~Ak~~L~~l~~e~~~eeIDId~d-----~el~~~y~~~VP-Vl~idGe~i~~~r~d~e~L~~~L~~~~~ 144 (170)
+++++.|+++..+=++=.|=|++. ++..++|...+| +|.+.+.. ..+...++.+.+.++.+.+
T Consensus 46 eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~~~~PaIieIP~k~-~~y~~~~d~i~~~~~~~~~ 114 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHTRSIPAVLEIPSKD-HPYDASKDSILRRARGMFN 114 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcCCcCCEEEEECCCC-CCCCCcccHHHHHHHHHcC
Confidence 566777777322335555566665 566677887899 55677744 2334566888888876643
No 331
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=31.91 E-value=70 Score=24.91 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=40.1
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCcHH--HHHh--cC--CcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESY--WYKL--YR--YEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~e--l~~~--y~--~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
.|.+=....|+.+ .+.++++.+...+....-+.+.|.. +... .+ ..=|++.+|++ .+++.+++.+.+.|.+
T Consensus 70 ~I~VC~g~~C~~~-Ga~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~ClG~C~~aP~v~V~~~--~y~~vt~e~v~~il~~ 146 (148)
T TIGR01958 70 HLQVCTNVPCALR-GSEALLKYLENKLGIKPGETTPDGRFTLVEVECLGACGNAPVMMINDD--YYEFLTPEKLDELLER 146 (148)
T ss_pred EEEEcCCchhhhc-CHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCccCccCCCCEEEECCE--EeCCCCHHHHHHHHHh
Confidence 4556666667754 3344444433222222122222311 1111 22 46899999986 4689999999999876
Q ss_pred c
Q psy17234 142 F 142 (170)
Q Consensus 142 ~ 142 (170)
+
T Consensus 147 ~ 147 (148)
T TIGR01958 147 Y 147 (148)
T ss_pred c
Confidence 4
No 332
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.53 E-value=1.1e+02 Score=24.85 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=28.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHhccC-----CcccEEEEEcCCc
Q psy17234 64 QRKPMLNLFTKDPCPLCDELKLELTPYL-----DRVHLEEVYLTPE 104 (170)
Q Consensus 64 ~~~~~VtLYTk~~CplCd~Ak~~L~~l~-----~e~~~eeIDId~d 104 (170)
.....++.|.-..||+|.+.-..|.+.. .++.+....+..+
T Consensus 83 ~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~~~f~~~ 128 (244)
T COG1651 83 YAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLREFPFLDP 128 (244)
T ss_pred CCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEEeecCCC
Confidence 3366899999999999977766666521 1256666666665
No 333
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=31.10 E-value=29 Score=27.72 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=16.6
Q ss_pred EEcCCCCchHHHHHHHHhccC
Q psy17234 71 LFTKDPCPLCDELKLELTPYL 91 (170)
Q Consensus 71 LYTk~~CplCd~Ak~~L~~l~ 91 (170)
+|+.|-|++|=..+..|.++.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~ 22 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLK 22 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHHH
Confidence 689999999999999988754
No 334
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=30.14 E-value=51 Score=28.59 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=23.2
Q ss_pred ccccCCCCeEEEEcCCCCchHHHHHHHHh
Q psy17234 60 FITSQRKPMLNLFTKDPCPLCDELKLELT 88 (170)
Q Consensus 60 ~~~s~~~~~VtLYTk~~CplCd~Ak~~L~ 88 (170)
...++..+.|.+-+-.|||+|-..+..|-
T Consensus 53 d~~~~Gk~~v~~igw~gCP~~A~~sW~L~ 81 (249)
T PF06053_consen 53 DLAPNGKPEVIFIGWEGCPYCAAESWALY 81 (249)
T ss_pred ccCCCCeeEEEEEecccCccchhhHHHHH
Confidence 34446778899999999999998887765
No 335
>COG4540 gpV Phage P2 baseplate assembly protein gpV [General function prediction only]
Probab=30.05 E-value=61 Score=27.02 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=33.3
Q ss_pred cceeEEEeeCCCCcchhhhhccCCCCccccc-CCCCeEEEEcCCC
Q psy17234 33 HQKGIVVYNTPESTMSVLLEKLPVKSNFITS-QRKPMLNLFTKDP 76 (170)
Q Consensus 33 g~~G~aiCnGgG~~~a~v~e~~~~~~~~~~s-~~~~~VtLYTk~~ 76 (170)
|+-.+++|.+||.+.+.++.-++...+...| .....+++|..-.
T Consensus 52 GEQV~vl~~~g~~~~~~~l~Gvys~~~~aPs~s~~~~~~~f~DGa 96 (184)
T COG4540 52 GEQVVVLSPSGGEALGGVLPGVYSSVFTAPSNSADKRVTLFPDGA 96 (184)
T ss_pred CceEEEEcCCCCcccceEEecccccCCCCCCCCCCcceEEcCCCc
Confidence 6667779999999999999887777664444 4456788887543
No 336
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=29.58 E-value=39 Score=26.29 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=22.4
Q ss_pred cccEEEeCCEEEEecCCCHHHHHHHHHhc
Q psy17234 114 EIPVLFLGGRFVCRNRFNAQILMSNECIF 142 (170)
Q Consensus 114 ~VPVl~idGe~i~~~r~d~e~L~~~L~~~ 142 (170)
.=|++.+||+. +++.+++++.+.|++.
T Consensus 118 ~aP~v~V~~~~--y~~vt~e~v~~il~~l 144 (145)
T PF01257_consen 118 QAPVVMVDGEW--YGNVTPEKVDEILEEL 144 (145)
T ss_dssp GSSEEEECCCE--EESSSCCHHHHHHHHH
T ss_pred CCCEEEECCEE--ECCCCHHHHHHHHHhc
Confidence 36999999985 4689999999988764
No 337
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=29.43 E-value=67 Score=21.33 Aligned_cols=29 Identities=14% Similarity=-0.111 Sum_probs=21.3
Q ss_pred CcccEEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 113 YEIPVLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 113 ~~VPVl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
..=|++.++.....+++++++.+.+.+++
T Consensus 48 ~~~P~v~i~~~~~~y~~v~~~~~~~il~~ 76 (77)
T cd02980 48 GLAPVVVVYPDGVWYGRVTPEDVEEIVEE 76 (77)
T ss_pred cCCCEEEEeCCCeEEccCCHHHHHHHHHh
Confidence 45798888732235689999999988864
No 338
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=28.49 E-value=15 Score=32.84 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=16.7
Q ss_pred eeecCCcceeeehhccccc
Q psy17234 14 FITSQRKPMLNLFTKDLKA 32 (170)
Q Consensus 14 ~~~~~~~ri~~~L~~~L~~ 32 (170)
=+|-+|.|++++|++.|++
T Consensus 344 P~GatG~~~~~~l~~qL~~ 362 (388)
T PRK06366 344 PIGNSGSRIIVTLINALKT 362 (388)
T ss_pred CcCCCHHHHHHHHHHHHHh
Confidence 3678899999999999985
No 339
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=27.72 E-value=2.4e+02 Score=23.13 Aligned_cols=58 Identities=10% Similarity=0.038 Sum_probs=37.2
Q ss_pred HHHHHhccCCcccEEEEEcCCcHHHHHhcCC-cccEE--EeC--CEE--EEecCCCHHHHHHHHH
Q psy17234 83 LKLELTPYLDRVHLEEVYLTPESYWYKLYRY-EIPVL--FLG--GRF--VCRNRFNAQILMSNEC 140 (170)
Q Consensus 83 Ak~~L~~l~~e~~~eeIDId~d~el~~~y~~-~VPVl--~id--Ge~--i~~~r~d~e~L~~~L~ 140 (170)
++..+++...++.|..+=+|.+......|+- .+|.. ++| |+. ...|..+++++++.+.
T Consensus 113 Vk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 113 VKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred HHHHHHHhcccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 3444445444466666666677677778884 68733 554 653 3678889999887554
No 340
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=27.33 E-value=1.1e+02 Score=28.07 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=26.1
Q ss_pred CcccEEEeCCEEEEecCCCHHHHHHHHHhcc
Q psy17234 113 YEIPVLFLGGRFVCRNRFNAQILMSNECIFQ 143 (170)
Q Consensus 113 ~~VPVl~idGe~i~~~r~d~e~L~~~L~~~~ 143 (170)
..||++.++++......+|.++++..|++|.
T Consensus 380 ~GIP~L~iE~D~~d~r~~d~gQ~~TRiEAFl 410 (413)
T TIGR02260 380 TGKPAAFIETDLVDPRYFSAANVKNRLESYF 410 (413)
T ss_pred cCCCEEEEEcCCCCcccCCHHHHHHHHHHHH
Confidence 4799999998876555569999999999985
No 341
>PRK07108 acetyl-CoA acetyltransferase; Provisional
Probab=27.19 E-value=15 Score=33.16 Aligned_cols=19 Identities=5% Similarity=-0.234 Sum_probs=16.7
Q ss_pred eeecCCcceeeehhccccc
Q psy17234 14 FITSQRKPMLNLFTKDLKA 32 (170)
Q Consensus 14 ~~~~~~~ri~~~L~~~L~~ 32 (170)
-++.+|+||++||+|.|++
T Consensus 349 p~gatG~r~~~~l~~~l~~ 367 (392)
T PRK07108 349 PYGVSGARLTGHALIEGKR 367 (392)
T ss_pred chhhhHHHHHHHHHHHHHh
Confidence 3678899999999999976
No 342
>PRK12373 NADH dehydrogenase subunit E; Provisional
Probab=26.82 E-value=1e+02 Score=28.56 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=26.8
Q ss_pred CcccEEEeCCEEEEecCCCHHHHHHHHHhccccc
Q psy17234 113 YEIPVLFLGGRFVCRNRFNAQILMSNECIFQCQE 146 (170)
Q Consensus 113 ~~VPVl~idGe~i~~~r~d~e~L~~~L~~~~~~~ 146 (170)
..-|++.||+++ ++.++++.+.+.|..+.+-+
T Consensus 142 ~~APv~~Ind~~--y~~LTpe~v~~IL~~l~ag~ 173 (400)
T PRK12373 142 VNAPMVQIGKDY--YEDLTPERLEEIIDAFAAGK 173 (400)
T ss_pred CCCCeEEECCEE--eCCCCHHHHHHHHHHHhCCC
Confidence 458999999996 57999999999999776544
No 343
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=26.69 E-value=85 Score=25.35 Aligned_cols=18 Identities=17% Similarity=0.617 Sum_probs=14.0
Q ss_pred HhcC-CcccEEEeCCEEEE
Q psy17234 109 KLYR-YEIPVLFLGGRFVC 126 (170)
Q Consensus 109 ~~y~-~~VPVl~idGe~i~ 126 (170)
++++ ..+|.+++||+++.
T Consensus 161 ~~~gI~gtPtfiInGky~v 179 (207)
T PRK10954 161 ADLQLRGVPAMFVNGKYMV 179 (207)
T ss_pred HHcCCCCCCEEEECCEEEE
Confidence 4455 47999999999864
No 344
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=26.65 E-value=2e+02 Score=23.84 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=26.0
Q ss_pred EE-EeeCCCCcchhhhhccCCCCcccccCCCCeEEEEcCCCCch
Q psy17234 37 IV-VYNTPESTMSVLLEKLPVKSNFITSQRKPMLNLFTKDPCPL 79 (170)
Q Consensus 37 ~a-iCnGgG~~~a~v~e~~~~~~~~~~s~~~~~VtLYTk~~Cpl 79 (170)
++ ++.|+|+...-++..+..+.- .....+++..++.|+-
T Consensus 2 i~vl~Sg~Gsn~~al~~~~~~~~l----~~~i~~visn~~~~~~ 41 (207)
T PLN02331 2 LAVFVSGGGSNFRAIHDACLDGRV----NGDVVVVVTNKPGCGG 41 (207)
T ss_pred EEEEEeCCChhHHHHHHHHHcCCC----CeEEEEEEEeCCCChH
Confidence 46 788888877777776655532 2244577777787765
No 345
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=26.54 E-value=4.1e+02 Score=22.99 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=32.8
Q ss_pred HHHHHHHHhccCCcccEEEEEcCCcHHHHHhcCCccc---EEEeCCEEEEe-----cCCCHHHHHHHHHhc
Q psy17234 80 CDELKLELTPYLDRVHLEEVYLTPESYWYKLYRYEIP---VLFLGGRFVCR-----NRFNAQILMSNECIF 142 (170)
Q Consensus 80 Cd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y~~~VP---Vl~idGe~i~~-----~r~d~e~L~~~L~~~ 142 (170)
|..|+.++++. .++. ..+|-.++ .....|+- .| .|+.||+.+.. +.++.++++++|++.
T Consensus 170 ~~aA~~l~~~~-~~~p-i~vD~mdN-~~~~~YgA-~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 170 LRAAKLLKEEF-PQCP-IVVDTMDN-NFNKAYGA-LPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred HHHHHHHHhhC-CCCC-EEEEccCC-HHHHHhCC-CcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 45555555543 2344 35565544 22334442 23 33347776633 348999999999864
No 346
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=25.97 E-value=1e+02 Score=24.18 Aligned_cols=28 Identities=7% Similarity=0.050 Sum_probs=23.1
Q ss_pred CcccEEEeCCEEEEecCCCHHHHHHHHHhc
Q psy17234 113 YEIPVLFLGGRFVCRNRFNAQILMSNECIF 142 (170)
Q Consensus 113 ~~VPVl~idGe~i~~~r~d~e~L~~~L~~~ 142 (170)
..=|++.+||+. +++.+++.+.+.|++.
T Consensus 126 ~~gPvv~V~~~~--y~~vt~e~v~~il~~~ 153 (154)
T PRK07539 126 DNAPVVMINDDT--YEDLTPEKIDELLDEL 153 (154)
T ss_pred CCCCEEEECCEE--eCCCCHHHHHHHHHhc
Confidence 358999999874 5899999999998753
No 347
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=25.69 E-value=1.3e+02 Score=23.39 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=27.6
Q ss_pred EEcCCcHHHHHhcCC-cccEEEe--CC-------------EEEEecCCCHHHHHHHHH
Q psy17234 99 VYLTPESYWYKLYRY-EIPVLFL--GG-------------RFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 99 IDId~d~el~~~y~~-~VPVl~i--dG-------------e~i~~~r~d~e~L~~~L~ 140 (170)
.++.=||.|+++|+- .||.+++ ++ -...+|-.+-+.-.+.+.
T Consensus 55 ~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 455557999999995 6996654 33 224667776666555555
No 348
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=25.19 E-value=52 Score=25.82 Aligned_cols=65 Identities=25% Similarity=0.251 Sum_probs=33.3
Q ss_pred CCeEEEEcC---CCCchHHHHHHHHhccCCcccEEEEEcCCcHHHHHhcCCccc-EEEeCCEEEEecCCCHHHHHHHHHh
Q psy17234 66 KPMLNLFTK---DPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYRYEIP-VLFLGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 66 ~~~VtLYTk---~~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~~~y~~~VP-Vl~idGe~i~~~r~d~e~L~~~L~~ 141 (170)
...+++|.+ -.|++|+....+ ..... .+++.++-.+..+.+...++ |+|.+|+ +..+.|.+.+..
T Consensus 15 ~~~~~vfl~GCnlrC~~C~n~~~~-~~~~g----~~lt~eel~~~I~~~~~~~~gVt~SGGE------l~~~~l~~ll~~ 83 (147)
T TIGR02826 15 EYSLAFYITGCPLGCKGCHSPESW-HLSEG----TKLTPEYLTKTLDKYRSLISCVLFLGGE------WNREALLSLLKI 83 (147)
T ss_pred CEEEEEEeCCCCCCCCCCCChHHc-CCCCC----cCCCHHHHHHHHHHhCCCCCEEEEechh------cCHHHHHHHHHH
Confidence 456888887 359999986332 22111 11222211233333443456 6677888 244555555543
No 349
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=25.06 E-value=1.1e+02 Score=23.54 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=24.4
Q ss_pred CcccEEEeCCEEEEecCCCHHHHHHHHHhc
Q psy17234 113 YEIPVLFLGGRFVCRNRFNAQILMSNECIF 142 (170)
Q Consensus 113 ~~VPVl~idGe~i~~~r~d~e~L~~~L~~~ 142 (170)
..+|-|++|++.+.+|-.|-++-.+.+.++
T Consensus 83 ~k~PAVV~D~~~VVYG~~DV~~A~~~~~~~ 112 (113)
T TIGR03757 83 TKIPAVVVDRRYVVYGETDVARALALIQQW 112 (113)
T ss_pred ccCCEEEEcCCeEEecCccHHHHHHHHHhc
Confidence 369999999999999999888776666543
No 350
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=25.00 E-value=2.1e+02 Score=23.40 Aligned_cols=52 Identities=6% Similarity=-0.059 Sum_probs=29.0
Q ss_pred EE-EeeCCCCcchhhhhccCCCCcccccCCCCeEE-EEcC-CCCchHHHHHHHHhccCCcccEEEEE
Q psy17234 37 IV-VYNTPESTMSVLLEKLPVKSNFITSQRKPMLN-LFTK-DPCPLCDELKLELTPYLDRVHLEEVY 100 (170)
Q Consensus 37 ~a-iCnGgG~~~a~v~e~~~~~~~~~~s~~~~~Vt-LYTk-~~CplCd~Ak~~L~~l~~e~~~eeID 100 (170)
+| +|+|+|....-+++.+..+.. ...|. +++. +.|. ++++.++.+ +.+..++
T Consensus 4 i~vl~sg~gs~~~~ll~~~~~~~~------~~~I~~vvs~~~~~~----~~~~a~~~g--Ip~~~~~ 58 (200)
T PRK05647 4 IVVLASGNGSNLQAIIDACAAGQL------PAEIVAVISDRPDAY----GLERAEAAG--IPTFVLD 58 (200)
T ss_pred EEEEEcCCChhHHHHHHHHHcCCC------CcEEEEEEecCccch----HHHHHHHcC--CCEEEEC
Confidence 57 888888877777776654421 12233 3455 4564 455555544 5554433
No 351
>KOG4420|consensus
Probab=24.86 E-value=1.1e+02 Score=27.45 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=53.7
Q ss_pred eEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc-----HHHHHhc--CCcccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 68 MLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE-----SYWYKLY--RYEIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 68 ~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d-----~el~~~y--~~~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
..++|.-|+--.-.+++-++.+- .++++..|++-. +-|+-+. +-.|||+..+.-.+ .|..+|.+.++
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK--~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II----~d~tqIIdYvE 99 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEK--GIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNII----SDYTQIIDYVE 99 (325)
T ss_pred cceeeecCcccccceeeeehhhc--ccccceeeccCccccccCchheecCCCCCCceEecCCeec----ccHHHHHHHHH
Confidence 48999999888888888888773 488888888876 3355554 34799975544443 78999999998
Q ss_pred h-ccccch
Q psy17234 141 I-FQCQEV 147 (170)
Q Consensus 141 ~-~~~~~~ 147 (170)
+ |.+..+
T Consensus 100 rtf~ger~ 107 (325)
T KOG4420|consen 100 RTFTGERV 107 (325)
T ss_pred Hhhccccc
Confidence 6 554444
No 352
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=23.68 E-value=1.4e+02 Score=23.34 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=33.2
Q ss_pred CcHHHHHhc---CCcccEEEeCCEEEEecCCCHHHHHHHHHhccccch
Q psy17234 103 PESYWYKLY---RYEIPVLFLGGRFVCRNRFNAQILMSNECIFQCQEV 147 (170)
Q Consensus 103 ~d~el~~~y---~~~VPVl~idGe~i~~~r~d~e~L~~~L~~~~~~~~ 147 (170)
.+++...+| ....+.-+.+|..+..|+|+...|++.|.+|-..-|
T Consensus 51 R~~~~v~ky~~~ELgt~g~i~~~rlii~G~~~~~~i~~~L~~yI~~yV 98 (133)
T TIGR00311 51 RDEQHLLKYLLKELGTAGNLEGGRLILQGKFTHFLLNERIEDYVRKYV 98 (133)
T ss_pred CCHHHHHHHHHHHhCCCceecCCEEEEEeecCHHHHHHHHHHHHhheE
Confidence 345555555 235676667889999999999999999998765444
No 353
>PF13562 NTP_transf_4: Sugar nucleotidyl transferase
Probab=23.60 E-value=79 Score=25.09 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=27.9
Q ss_pred CcHHHHHhcCCcc----cEEEeCCEEEEecCCCHHHHHHHHHhccccchhcccC
Q psy17234 103 PESYWYKLYRYEI----PVLFLGGRFVCRNRFNAQILMSNECIFQCQEVTMFNE 152 (170)
Q Consensus 103 ~d~el~~~y~~~V----PVl~idGe~i~~~r~d~e~L~~~L~~~~~~~~~~~~~ 152 (170)
..+.|.++|.... |++++||..+ .|+ .+.+.|.+..--|.-|.++
T Consensus 49 tr~yL~~kyp~~~~~~~~~l~INgr~l----p~~-~l~~~i~~l~~geal~~~~ 97 (156)
T PF13562_consen 49 TRPYLQEKYPENELEEDDNLLINGRFL----PDE-ALVEAIKDLKPGEALVQGD 97 (156)
T ss_pred hhHHHHhhCCcccccCCceEEEecccc----CCH-HHHHHHHhcCCCceEeeCC
Confidence 3466777786543 7999999986 344 5555665555544444443
No 354
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=23.57 E-value=17 Score=26.68 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHhccccchhcccCCCCcccceeeeeec
Q psy17234 129 RFNAQILMSNECIFQCQEVTMFNEAPRMKTITQITKIE 166 (170)
Q Consensus 129 r~d~e~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (170)
.+++++.+..+.-.-++.+..||+.-|-+-+.+|.+|-
T Consensus 30 ~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT 67 (85)
T PF11116_consen 30 SITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKIT 67 (85)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 36788888888888899999999999998888887763
No 355
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=23.10 E-value=99 Score=24.80 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=20.9
Q ss_pred EEEEcCCCCchHHHHHHHHhccCC-----cccEEEEEcCCc
Q psy17234 69 LNLFTKDPCPLCDELKLELTPYLD-----RVHLEEVYLTPE 104 (170)
Q Consensus 69 VtLYTk~~CplCd~Ak~~L~~l~~-----e~~~eeIDId~d 104 (170)
|.+|-..+|+.|......|.++.. ++++.-|++|..
T Consensus 41 L~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 41 LFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred EEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 434445788888876655554322 245666666544
No 356
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=22.47 E-value=3.2e+02 Score=24.26 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=39.7
Q ss_pred CCCCeEEEEcCC---CCchHHHHHHHHhccCCcccEEEEEcCCcHHHH----Hh-cCCcccEEEe-CCE
Q psy17234 64 QRKPMLNLFTKD---PCPLCDELKLELTPYLDRVHLEEVYLTPESYWY----KL-YRYEIPVLFL-GGR 123 (170)
Q Consensus 64 ~~~~~VtLYTk~---~CplCd~Ak~~L~~l~~e~~~eeIDId~d~el~----~~-y~~~VPVl~i-dGe 123 (170)
+....+++|+.| +=|.|+++.+-+-+-+.++--...|+=.|.+++ +. +++.|||-++ |..
T Consensus 116 ~g~Tr~~vy~qPp~~~~p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~ 184 (284)
T PF07894_consen 116 KGVTRATVYFQPPKDGQPHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQ 184 (284)
T ss_pred cCCceEEEEeCCCCCCCCCHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechh
Confidence 455789999998 456777766665544445666667888885543 33 5789997654 443
No 357
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.87 E-value=1e+02 Score=26.39 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=26.9
Q ss_pred CcccEEEeCCEEEEecCCCHHHHHHHHHhcc
Q psy17234 113 YEIPVLFLGGRFVCRNRFNAQILMSNECIFQ 143 (170)
Q Consensus 113 ~~VPVl~idGe~i~~~r~d~e~L~~~L~~~~ 143 (170)
..||.+++||.....|..+++.+..+|....
T Consensus 183 ~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~ 213 (225)
T COG2761 183 RGVPTFVFDGKYAVSGAQPYDVLEDALRQLL 213 (225)
T ss_pred ccCceEEEcCcEeecCCCCHHHHHHHHHHHH
Confidence 4699888899998999999999999998654
No 358
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=21.64 E-value=1.4e+02 Score=22.59 Aligned_cols=59 Identities=22% Similarity=0.360 Sum_probs=34.6
Q ss_pred CeEEEEcCCC--CchHHHHHHHHhc----cCCcccEEEEEcCCcHHHHHhcCC-ccc--EEEeCCEEE
Q psy17234 67 PMLNLFTKDP--CPLCDELKLELTP----YLDRVHLEEVYLTPESYWYKLYRY-EIP--VLFLGGRFV 125 (170)
Q Consensus 67 ~~VtLYTk~~--CplCd~Ak~~L~~----l~~e~~~eeIDId~d~el~~~y~~-~VP--Vl~idGe~i 125 (170)
..|.+++.+. ++-+..+--+|-+ +...+..-.++-+.+.++.++|+- ..| |++.+|+++
T Consensus 28 ~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~l 95 (107)
T PF07449_consen 28 DAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDGRYL 95 (107)
T ss_dssp CEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEEE
T ss_pred cEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECCEEE
Confidence 3455555442 5555554444444 333355555664445789999995 689 445699987
No 359
>COG0400 Predicted esterase [General function prediction only]
Probab=21.58 E-value=1.1e+02 Score=25.55 Aligned_cols=79 Identities=16% Similarity=0.014 Sum_probs=48.0
Q ss_pred eeeee-cCCcceeeehhccccccceeEE-EeeCCCCcchhhhhccCCCCcccccCCCCeEEEEcCCCC----chHHHHHH
Q psy17234 12 STFIT-SQRKPMLNLFTKDLKAHQKGIV-VYNTPESTMSVLLEKLPVKSNFITSQRKPMLNLFTKDPC----PLCDELKL 85 (170)
Q Consensus 12 ~~~~~-~~~~ri~~~L~~~L~~g~~G~a-iCnGgG~~~a~v~e~~~~~~~~~~s~~~~~VtLYTk~~C----plCd~Ak~ 85 (170)
-.++| ||||.|..++.-..+ +.++.+ .+.|- .+++.- ..++. ...+-+..+++.++ .++.++++
T Consensus 101 ii~~GfSqGA~ial~~~l~~~-~~~~~ail~~g~-----~~~~~~--~~~~~--~~~pill~hG~~Dpvvp~~~~~~l~~ 170 (207)
T COG0400 101 IILIGFSQGANIALSLGLTLP-GLFAGAILFSGM-----LPLEPE--LLPDL--AGTPILLSHGTEDPVVPLALAEALAE 170 (207)
T ss_pred eEEEecChHHHHHHHHHHhCc-hhhccchhcCCc-----CCCCCc--ccccc--CCCeEEEeccCcCCccCHHHHHHHHH
Confidence 34444 999999988765555 355555 43321 111111 11111 44566788888887 57999999
Q ss_pred HHhccCCcccEEEEE
Q psy17234 86 ELTPYLDRVHLEEVY 100 (170)
Q Consensus 86 ~L~~l~~e~~~eeID 100 (170)
.|+....++++++++
T Consensus 171 ~l~~~g~~v~~~~~~ 185 (207)
T COG0400 171 YLTASGADVEVRWHE 185 (207)
T ss_pred HHHHcCCCEEEEEec
Confidence 999976555555554
No 360
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=21.53 E-value=48 Score=25.06 Aligned_cols=37 Identities=5% Similarity=0.065 Sum_probs=25.4
Q ss_pred cceeeeecCCccee------eehhccccccceeEE-EeeCCCCc
Q psy17234 10 VKSTFITSQRKPML------NLFTKDLKAHQKGIV-VYNTPEST 46 (170)
Q Consensus 10 ~~~~~~~~~~~ri~------~~L~~~L~~g~~G~a-iCnGgG~~ 46 (170)
+|-+||.-+|.+.. .+|+.+++...+.+. .|.|.|.+
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C 44 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHENDIELEGACEGSLAC 44 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHcCCCCCccCCCccee
Confidence 46688888886443 358888877666777 88876553
No 361
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=21.51 E-value=1.8e+02 Score=22.02 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=34.1
Q ss_pred cHHHHHhc---CCcccEEEeC-CEEEEecCCCHHHHHHHHHhccccchh
Q psy17234 104 ESYWYKLY---RYEIPVLFLG-GRFVCRNRFNAQILMSNECIFQCQEVT 148 (170)
Q Consensus 104 d~el~~~y---~~~VPVl~id-Ge~i~~~r~d~e~L~~~L~~~~~~~~~ 148 (170)
+++...+| ....+.-+.+ |..+..|+|+...|++.|..|-..-|.
T Consensus 34 ~p~hv~kyl~~ELgt~g~id~~~rlii~G~~~~~~i~~~l~~yI~~yVl 82 (110)
T smart00653 34 PPDHVLKFLLAELGTQGSIDGKGRLIVNGRFTPKKLQDLLRRYIKEYVL 82 (110)
T ss_pred CHHHHHHHHHHHhCCceeECCCCeEEEEEeeCHHHHHHHHHHHHHhcEE
Confidence 45555555 2467877766 889999999999999999988766553
No 362
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=21.45 E-value=1.3e+02 Score=18.55 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=16.3
Q ss_pred eCCEEEEecCCCHHHHHHHHHh
Q psy17234 120 LGGRFVCRNRFNAQILMSNECI 141 (170)
Q Consensus 120 idGe~i~~~r~d~e~L~~~L~~ 141 (170)
.||+. .|+|+.++|++.+.+
T Consensus 6 ~~g~~--~GP~s~~el~~l~~~ 25 (45)
T PF14237_consen 6 RNGQQ--QGPFSLEELRQLISS 25 (45)
T ss_pred CCCeE--ECCcCHHHHHHHHHc
Confidence 46766 489999999999874
No 363
>PF11301 DUF3103: Protein of unknown function (DUF3103); InterPro: IPR021452 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=21.43 E-value=44 Score=30.47 Aligned_cols=45 Identities=11% Similarity=0.089 Sum_probs=24.1
Q ss_pred EEEEEcCCcHHHHHhcCC-cccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 96 LEEVYLTPESYWYKLYRY-EIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 96 ~eeIDId~d~el~~~y~~-~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
++..|+..+.-+.+-|.. ++||+++|-...-.-+-....+++.|.
T Consensus 104 IeAyD~~G~~h~LDv~q~P~~PVlVVd~d~~k~l~aGl~~M~~el~ 149 (350)
T PF11301_consen 104 IEAYDVYGQIHQLDVYQLPDVPVLVVDIDSRKELKAGLAAMRAELQ 149 (350)
T ss_pred eEEEecCCCEEEechhhCCCCCEEEEeCCcHHHHHHHHHHHHHHHh
Confidence 344555555444455553 699999865432222334445555555
No 364
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=21.18 E-value=3.2e+02 Score=22.19 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=22.9
Q ss_pred EE-EeeCCCCcchhhhhccCCCCcccccCCCCeEEEEcCCCCc
Q psy17234 37 IV-VYNTPESTMSVLLEKLPVKSNFITSQRKPMLNLFTKDPCP 78 (170)
Q Consensus 37 ~a-iCnGgG~~~a~v~e~~~~~~~~~~s~~~~~VtLYTk~~Cp 78 (170)
+| +|+|+|....-+++.+..+.. .....+++..++.|+
T Consensus 3 iail~sg~gs~~~~ll~~~~~~~l----~~~I~~vi~~~~~~~ 41 (190)
T TIGR00639 3 IVVLISGNGSNLQAIIDACKEGKI----PASVVLVISNKPDAY 41 (190)
T ss_pred EEEEEcCCChhHHHHHHHHHcCCC----CceEEEEEECCccch
Confidence 57 889999877777776654422 112334455666663
No 365
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=20.89 E-value=1.5e+02 Score=22.48 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=20.4
Q ss_pred cccEEEeCCEEEEecCCCHHHHHHHHH
Q psy17234 114 EIPVLFLGGRFVCRNRFNAQILMSNEC 140 (170)
Q Consensus 114 ~VPVl~idGe~i~~~r~d~e~L~~~L~ 140 (170)
.=|+|+.++.... +|++++++++|.
T Consensus 91 kRPIi~~~~~~~v--G~~~e~~~~~l~ 115 (131)
T PRK01655 91 RRPIIIDEKRLQV--GYNEDEIRAFLP 115 (131)
T ss_pred eCCEEEECCEEEe--cCCHHHHHHHhh
Confidence 5799988887554 799999999985
No 366
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=20.71 E-value=1.9e+02 Score=19.59 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEeCCEEEEecCCCHHHHHHHHHhc
Q psy17234 118 LFLGGRFVCRNRFNAQILMSNECIF 142 (170)
Q Consensus 118 l~idGe~i~~~r~d~e~L~~~L~~~ 142 (170)
||+||..+-.+. +++.|.+.|...
T Consensus 1 VFlNG~~iG~~~-~p~~l~~~lr~~ 24 (63)
T PF04566_consen 1 VFLNGVWIGIHS-DPEELVKTLRNL 24 (63)
T ss_dssp EEETTEEEEEES-SHHHHHHHHHHH
T ss_pred CEECCEEEEEEc-CHHHHHHHHHHH
Confidence 689999987765 889999888743
No 367
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=20.36 E-value=2.5e+02 Score=24.39 Aligned_cols=79 Identities=16% Similarity=0.089 Sum_probs=50.7
Q ss_pred cccCCCCeEEEEcCCCCchHHHHHHHHhccCCcccEEEEEcCCc-----HHHHHhcC-Cccc-EEEeCCEEEEecCCCHH
Q psy17234 61 ITSQRKPMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE-----SYWYKLYR-YEIP-VLFLGGRFVCRNRFNAQ 133 (170)
Q Consensus 61 ~~s~~~~~VtLYTk~~CplCd~Ak~~L~~l~~e~~~eeIDId~d-----~el~~~y~-~~VP-Vl~idGe~i~~~r~d~e 133 (170)
+.......+-||+..+|+==--+|.+|.++..+ .+..|.|+.+ +++.+..+ ..-+ +||+|+=..-..--+..
T Consensus 47 l~G~pannvLL~G~rGtGKSSlVkall~~y~~~-GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk 125 (249)
T PF05673_consen 47 LQGLPANNVLLWGARGTGKSSLVKALLNEYADQ-GLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYK 125 (249)
T ss_pred HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc-CceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHH
Confidence 333455679999999999999999999987643 3555555555 55555544 2223 78899844333333455
Q ss_pred HHHHHHH
Q psy17234 134 ILMSNEC 140 (170)
Q Consensus 134 ~L~~~L~ 140 (170)
.|+..|+
T Consensus 126 ~LKs~Le 132 (249)
T PF05673_consen 126 ALKSVLE 132 (249)
T ss_pred HHHHHhc
Confidence 5666664
No 368
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=20.26 E-value=22 Score=32.00 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=15.7
Q ss_pred eecCCcceeeehhccccc
Q psy17234 15 ITSQRKPMLNLFTKDLKA 32 (170)
Q Consensus 15 ~~~~~~ri~~~L~~~L~~ 32 (170)
++.+|.|+++++++.|+.
T Consensus 361 ~gatG~~~v~e~~~qL~~ 378 (404)
T PRK06205 361 VGATGGRILATLLRELQR 378 (404)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 567789999999999985
No 369
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=20.13 E-value=1.4e+02 Score=23.13 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=34.9
Q ss_pred CcHHHHHhc---CCcccEEEeC-CEEEEecCCCHHHHHHHHHhccccch
Q psy17234 103 PESYWYKLY---RYEIPVLFLG-GRFVCRNRFNAQILMSNECIFQCQEV 147 (170)
Q Consensus 103 ~d~el~~~y---~~~VPVl~id-Ge~i~~~r~d~e~L~~~L~~~~~~~~ 147 (170)
.+++...+| ....+.-+.+ |..+..|+|+.++|++.|..|-..-|
T Consensus 46 R~p~~~~ky~~~ELgt~~~id~~~~lii~G~~~~~~i~~~L~~fI~~yV 94 (125)
T PF01873_consen 46 RDPEHVLKYFGKELGTQGSIDGKGRLIINGRFSSKQIQDLLDKFIKEYV 94 (125)
T ss_dssp SSHHHHHHHHHHHSSSEEEEETTTEEEEESSSSCCHHHHHHHHHHCHHS
T ss_pred CCHHHHHHHHHHHHCCceEECCCCEEEEEEecCHHHHHHHHHHHHHHEE
Confidence 356666665 2467877777 89999999999999999998865544
Done!