RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17234
         (170 letters)



>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural
           genomics, riken structural genomics/proteomics
           initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
          Length = 100

 Score = 74.0 bits (182), Expect = 4e-18
 Identities = 38/83 (45%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 58  SNFITSQRK-PMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPES--YWYKLYRYE 114
            N   S R  P+L LFTK PCPLCDE K  L PY DR  L+EV +T      WY+ Y+++
Sbjct: 7   GNLSASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYKFD 66

Query: 115 IPVLFLGGRFVCRNRFNAQILMS 137
           IPV  L G+F+  +R N   L  
Sbjct: 67  IPVFHLNGQFLMMHRVNTSKLEK 89


>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural
           genomics, PSI, protein structure initiative; NMR
           {Nitrosomonas europaea}
          Length = 107

 Score = 64.4 bits (157), Expect = 2e-14
 Identities = 17/98 (17%), Positives = 42/98 (42%), Gaps = 11/98 (11%)

Query: 45  STMSVLLEKLPVKSNFITSQRKPM-LNLFTKDPCPLCDELKLELTPYLDR--VHLEEVYL 101
              ++  +        + +Q +P  L ++ ++ C LC+E+   L     +    LE + +
Sbjct: 13  GRENLYFQGH------MNNQVEPRKLVVYGREGCHLCEEMIASLRVLQKKSWFELEVINI 66

Query: 102 TPESYWYKLYRYEIPVLFL--GGRFVCRNRFNAQILMS 137
               +  +LY   +PVLF     + +C    ++ ++ +
Sbjct: 67  DGNEHLTRLYNDRVPVLFAVNEDKELCHYFLDSDVIGA 104


>1ttz_A Conserved hypothetical protein; structural genomics, unknown
           function, PSI, protein structure initiative; 2.11A
           {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
          Length = 87

 Score = 46.6 bits (111), Expect = 8e-08
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 69  LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYRYEIPVLFLGGRFVCRN 128
           L L+ +D C LCD+    L           V++  ++     Y   +PVL          
Sbjct: 3   LTLYQRDDCHLCDQAVEALAQARA-GAFFSVFIDDDAALESAYGLRVPVLRDPMGRELDW 61

Query: 129 RFNAQIL 135
            F+A  L
Sbjct: 62  PFDAPRL 68


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.3 bits (78), Expect = 0.017
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 19/94 (20%)

Query: 8   LPVKSTFITSQRKPMLNLFTKDLKAHQKGIVVYNTPESTMSVLLEKLPVKSNFITSQRKP 67
           +P  S FI SQ +     F K L    +G    + P +   ++ + L     +++S  +P
Sbjct: 22  VPTASFFIASQLQ---EQFNKILPEPTEGFAADDEPTTPAELVGKFL----GYVSSLVEP 74

Query: 68  MLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYL 101
                          L L LT        E  YL
Sbjct: 75  ------SKVGQFDQVLNLCLT------EFENCYL 96



 Score = 33.1 bits (75), Expect = 0.038
 Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 43/152 (28%)

Query: 1   MSVLLEKLPVKST-------FITSQRKPML-NLFTKDLKAHQKGIVV-YNTP--ESTMSV 49
           +++ L K    S        F  S+RK    N F   L      +   +++        +
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPF--SERKLKFSNRF---LP-----VASPFHSHLLVPASDL 438

Query: 50  LLEKLPVKSNFITSQ--RKPMLNLFT-KDPCPLCDELKLELTPYL--DRVHLEEVYLTPE 104
           + + L   +    ++  + P+ + F   D   L   +   +   +    V  E       
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498

Query: 105 SYWYKLYRYEIPVLFLG-------GRFVCRNR 129
           ++          +L  G       G    RN+
Sbjct: 499 TH----------ILDFGPGGASGLGVLTHRNK 520


>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
           phosphoglycerate dehydrogenase PGDH, oxidoreductase;
           HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
           c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
           2pa3_A* 2p9g_A*
          Length = 404

 Score = 30.3 bits (69), Expect = 0.27
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)

Query: 29  DLK-AHQKGIVVYNTPES-TMSV 49
           DL  A ++GI V+N P S T SV
Sbjct: 84  DLDAAAKRGIPVFNAPFSNTRSV 106


>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
           structural genomics center for infect disease,
           brucellosis; 2.15A {Brucella melitensis biovar abortus}
          Length = 416

 Score = 30.3 bits (69), Expect = 0.28
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)

Query: 29  DLK-AHQKGIVVYNTPES-TMSV 49
           +LK A ++GI V+N P S T SV
Sbjct: 95  ELKAARKRGIPVFNAPFSNTRSV 117


>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
          structural genomics, protein structure initiative;
          2.20A {Thermoplasma acidophilum}
          Length = 290

 Score = 29.9 bits (68), Expect = 0.32
 Identities = 4/22 (18%), Positives = 10/22 (45%), Gaps = 1/22 (4%)

Query: 29 DLK-AHQKGIVVYNTPESTMSV 49
          D+    +  ++  N    ++SV
Sbjct: 64 DVNGIPENVVLCSNAGAYSISV 85


>2nac_A NAD-dependent formate dehydrogenase;
           oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
           SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
           2gsd_A* 3fn4_A
          Length = 393

 Score = 28.8 bits (65), Expect = 0.87
 Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 2/23 (8%)

Query: 29  DLK-AHQKGIVVYNTPES-TMSV 49
           DL+ A  + + V       ++SV
Sbjct: 128 DLQSAIDRNVTVAEVTYCNSISV 150


>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
           genomics, PSI-2, P structure initiative; 1.90A
           {Ralstonia solanacearum}
          Length = 352

 Score = 28.4 bits (64), Expect = 1.1
 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)

Query: 29  DLK-AHQKGIVVYNTPESTMSV 49
           DL+    KG+VV     S ++ 
Sbjct: 90  DLEACTDKGVVVLEGKGSPVAP 111


>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
           phosphoglycerate dehydrogenase deficiency, S metabolism,
           2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
           sapiens}
          Length = 335

 Score = 28.3 bits (64), Expect = 1.3
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 2/23 (8%)

Query: 29  DLK-AHQKGIVVYNTPE-STMSV 49
           DL+ A +KGI+V NTP  +++S 
Sbjct: 104 DLEAATRKGILVMNTPNGNSLSA 126


>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
           phosphorylation, transcriptional corepresso
           transcription repressor; HET: NAD; 1.95A {Homo sapiens}
           SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
           3ga0_A 2ome_A*
          Length = 347

 Score = 28.0 bits (63), Expect = 1.4
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 9/32 (28%)

Query: 29  DLK-AHQKGIVVYNTP--------ESTMSVLL 51
           D+K A   GI V N P        +ST+  +L
Sbjct: 100 DIKSAGDLGIAVCNVPAASVEETADSTLCHIL 131


>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
           national project on protein structural and functional
           analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
          Length = 313

 Score = 27.9 bits (63), Expect = 1.4
 Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 2/23 (8%)

Query: 29  DLK-AHQKGIVVYNTPES-TMSV 49
           D + A ++ I V   P + T S 
Sbjct: 83  DTEEAEKRNIKVVYAPGASTDSA 105


>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
           oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
           PDB: 3n7u_A* 3naq_A
          Length = 351

 Score = 28.0 bits (63), Expect = 1.5
 Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)

Query: 29  DLK-AHQKGIVVYNTPES-TMSV 49
           DL+ A   G+ V     S  +SV
Sbjct: 101 DLQAAAAAGLTVAEVTGSNVVSV 123


>1wwk_A Phosphoglycerate dehydrogenase; riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
           horikoshii}
          Length = 307

 Score = 27.9 bits (63), Expect = 1.8
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)

Query: 29  DLK-AHQKGIVVYNTPE-STMSV 49
           D++ A +KGI V N P  S+ SV
Sbjct: 81  DVEAAKEKGIEVVNAPAASSRSV 103


>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
           structural genomics, NPPSFA; HET: MSE NAD; 2.12A
           {Aquifex aeolicus VF5} PDB: 3kb6_A*
          Length = 334

 Score = 27.2 bits (61), Expect = 2.5
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)

Query: 29  DLK-AHQKGIVVYNTPE-STMSV 49
           DL    +KGI+V + P  S  SV
Sbjct: 79  DLDYCKKKGILVTHIPAYSPESV 101


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 2.9
 Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 19/135 (14%)

Query: 6   EKLPVKSTFITSQRKPMLNLFTKDLKAHQKGIVVYNTP--ESTMSVLLEKLP---VKSNF 60
           + LP +      +R  ++    +D  A        N     + +   L  L     +  F
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 61  ITSQRKPMLNLFTKD---PCPLCDELKLELTPYLDRVHLEEVYLTPESY---WYKLYRYE 114
                   L++F      P  L   +  ++      V + +  L   S      K     
Sbjct: 376 D------RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQPKESTIS 427

Query: 115 IPVLFLGGRFVCRNR 129
           IP ++L  +    N 
Sbjct: 428 IPSIYLELKVKLENE 442


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.5 bits (57), Expect = 3.3
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 9/37 (24%)

Query: 52 EKLPVKSNFITSQRKPMLNLFTKDPCPLCDELKLELT 88
          EK  +K   + +     L L+  D  P    L ++ T
Sbjct: 18 EKQALKK--LQAS----LKLYADDSAP---ALAIKAT 45


>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A
          {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1
          Length = 303

 Score = 26.8 bits (60), Expect = 3.7
 Identities = 2/22 (9%), Positives = 7/22 (31%), Gaps = 1/22 (4%)

Query: 29 DLKAHQKGIVVYNTPE-STMSV 49
            ++    + V      +  +V
Sbjct: 65 PWESIPPHVTVAGNAGSNADAV 86


>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics,
          center for structural genomics of infec diseases,
          csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
          Length = 381

 Score = 26.9 bits (60), Expect = 4.0
 Identities = 5/19 (26%), Positives = 7/19 (36%), Gaps = 1/19 (5%)

Query: 32 AHQKGIVVYNTPES-TMSV 49
            Q GI     P    ++V
Sbjct: 80 LKQAGIGFSAAPGCNAIAV 98


>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
           biosy structural genomics, PSI, protein structure
           initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
           SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
           3ddn_A*
          Length = 529

 Score = 26.9 bits (60), Expect = 4.0
 Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 1/19 (5%)

Query: 32  AHQKGIVVYNTPES-TMSV 49
           A  +G++V N P S   S 
Sbjct: 85  ATARGVLVVNAPTSNIHSA 103


>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
          protein structural and functional analyses; 1.95A
          {Pyrococcus horikoshii}
          Length = 333

 Score = 26.4 bits (59), Expect = 4.7
 Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 1/18 (5%)

Query: 29 DLK-AHQKGIVVYNTPES 45
          DL+ A ++GI V      
Sbjct: 79 DLEEATKRGIYVTKVSGL 96


>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
           dehydrogenase, oxidoreductase; HET: NAD; 1.70A
           {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
           4e5m_A*
          Length = 330

 Score = 26.4 bits (59), Expect = 4.9
 Identities = 4/32 (12%), Positives = 11/32 (34%), Gaps = 9/32 (28%)

Query: 29  DLK-AHQKGIVVYNTP--------ESTMSVLL 51
           D+     +G+ +   P        E  + + +
Sbjct: 82  DVDACTARGVWLTFVPDLLTVPTAELAIGLAV 113


>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
           variant of the BAB rossmann fold, oxidoreductase; 1.98A
           {Acidaminococcus fermentans}
          Length = 331

 Score = 26.4 bits (59), Expect = 5.0
 Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 2/23 (8%)

Query: 29  DLK-AHQKGIVVYNTPE-STMSV 49
           D + A + G  +   P  S  ++
Sbjct: 84  DKEYAKELGFPMAFVPRYSPNAI 106


>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
           2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
           c.23.12.1
          Length = 320

 Score = 26.4 bits (59), Expect = 5.1
 Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 9/32 (28%)

Query: 29  DLK-AHQKGIVVYNTP--------ESTMSVLL 51
           DL     +GI V N P        E  M +LL
Sbjct: 82  DLDACKARGIKVGNAPHGVTVATAEIAMLLLL 113


>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate,
          NAD, tartrate, phosph oxidoreductase; HET: NAD TLA;
          2.30A {Pseudomonas aeruginosa}
          Length = 380

 Score = 26.5 bits (59), Expect = 5.6
 Identities = 4/19 (21%), Positives = 6/19 (31%), Gaps = 1/19 (5%)

Query: 32 AHQKGIVVYNTPES-TMSV 49
            + GI   + P      V
Sbjct: 77 FAEAGIAWSSAPGCNARGV 95


>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
           genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
           horikoshii} PDB: 2dbr_A* 2dbz_A*
          Length = 334

 Score = 26.4 bits (59), Expect = 6.0
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 9/32 (28%)

Query: 29  DLK-AHQKGIVVYNTP--------ESTMSVLL 51
           D++ A ++GI V NTP        +   ++LL
Sbjct: 82  DIEEATKRGIYVTNTPDVLTDATADLAFALLL 113


>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
           transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1
           c.47.1.10
          Length = 241

 Score = 26.2 bits (58), Expect = 6.0
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 62  TSQRKPMLNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLY----RYEIPV 117
             Q +  +++FTK  CP C + K  L      +  EE+ L  ++    +     R  +P 
Sbjct: 165 QHQVQESISIFTKPGCPFCAKAKQLLHDK--GLSFEEIILGHDATIVSVRAVSGRTTVPQ 222

Query: 118 LFLGGRFV 125
           +F+GG+ +
Sbjct: 223 VFIGGKHI 230


>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
           genomics, protein structure initiative, nysgrc, P
           biology; 1.70A {Polaromonas SP}
          Length = 345

 Score = 26.0 bits (58), Expect = 7.2
 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 9/32 (28%)

Query: 29  DLK-AHQKGIVVYNTP--------ESTMSVLL 51
           D+  A   GI V +TP        E  M ++L
Sbjct: 109 DMAAARSLGIKVLHTPDVLSDACAEIAMLLVL 140


>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
           reversible interconversion of pyruvate INTO D-lactate;
           1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
           c.23.12.1 PDB: 1j49_A* 2dld_A*
          Length = 333

 Score = 26.0 bits (58), Expect = 7.3
 Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 2/23 (8%)

Query: 29  DLK-AHQKGIVVYNTPE-STMSV 49
           D+  A + G  + N P  S  ++
Sbjct: 85  DMAKAKELGFQITNVPVYSPNAI 107


>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
           dehydrogenase, D-lactate dehydrogenas oxidoreductase;
           HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
           c.23.12.1
          Length = 333

 Score = 26.0 bits (58), Expect = 7.3
 Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 2/23 (8%)

Query: 29  DLK-AHQKGIVVYNTPE-STMSV 49
           D+    Q GI + N P  S  ++
Sbjct: 83  DMTAMKQYGIRLSNVPAYSPAAI 105


>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
           redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
          Length = 81

 Score = 24.6 bits (54), Expect = 7.9
 Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 71  LFTKDPCPLCDELKLELTPYLDRVHL--EEVYLT--PES--YWYKLYRYEIPVLFLGGRF 124
           ++T++ C  C   K      ++      E + +   PE+          ++PV+  G   
Sbjct: 5   IYTRNDCVQCHATKR----AMENRGFDFEMINVDRVPEAAEALRAQGFRQLPVVIAGDLS 60

Query: 125 VC 126
             
Sbjct: 61  WS 62


>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
           riken structur genomics/proteomics initiative, RSGI,
           NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
          Length = 311

 Score = 26.0 bits (58), Expect = 8.0
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 9/32 (28%)

Query: 29  DLK-AHQKGIVVYNTP--------ESTMSVLL 51
           DL+ A ++GI V +TP        + T+++LL
Sbjct: 80  DLEAARERGIRVTHTPGVLTEATADLTLALLL 111


>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
           swapping, electron transport; 2.69A {Corynebacterium
           ammoniagenes} SCOP: c.47.1.1
          Length = 75

 Score = 24.1 bits (53), Expect = 9.1
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 71  LFTKDPCPLCDELKLELTPYLDRVHL--EEVYLT--PES--YWYKLYRYEIPVLFLGGRF 124
           L+TK  C  C   K      LDR  L    V ++   E+  Y   L   + PV+ + G  
Sbjct: 5   LYTKPACVQCTATKK----ALDRAGLAYNTVDISLDDEARDYVMALGYVQAPVVEVDGEH 60

Query: 125 VC 126
             
Sbjct: 61  WS 62


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0783    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,445,007
Number of extensions: 132146
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 38
Length of query: 170
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 83
Effective length of database: 4,272,666
Effective search space: 354631278
Effective search space used: 354631278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.5 bits)