RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17234
         (170 letters)



>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas
           campestris [TaxId: 339]}
          Length = 75

 Score = 50.6 bits (121), Expect = 8e-10
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 69  LNLFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYRYEIPVLFLGGRFVCRN 128
           L L+ +D C LCD+    L           V++  ++     Y   +PVL          
Sbjct: 2   LTLYQRDDCHLCDQAVEALAQARA-GAFFSVFIDDDAALESAYGLRVPVLRDPMGRELDW 60

Query: 129 RFNAQ 133
            F+A 
Sbjct: 61  PFDAP 65


>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein
           C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 100

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 58  SNFITSQRK-PMLNLFTKDPCPLCDELKLELTPYLDR--VHLEEVYLTPESYWYKLYRYE 114
            N   S R  P+L LFTK PCPLCDE K  L PY DR  +   ++ L   S WY+ Y+++
Sbjct: 7   GNLSASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYKFD 66

Query: 115 IPVLFLGGRFVCRNRFNAQILMS 137
           IPV  L G+F+  +R N   L  
Sbjct: 67  IPVFHLNGQFLMMHRVNTSKLEK 89


>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin
           {Corynebacterium ammoniagenes [TaxId: 1697]}
          Length = 74

 Score = 29.2 bits (65), Expect = 0.059
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 71  LFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWY--KLYRYEIPVLFLGGRFV 125
           L+TK  C  C   K  L       +  ++ L  E+  Y   L   + PV+ + G   
Sbjct: 5   LYTKPACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMALGYVQAPVVEVDGEHW 61


>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5
           {Haemophilus influenzae [TaxId: 727]}
          Length = 74

 Score = 27.6 bits (61), Expect = 0.25
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 71  LFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLY----RYEIPVLFLGGRFV 125
           +FTK  CP C + K  L      +  EE+ L  ++    +     R  +P +F+GG+ +
Sbjct: 9   IFTKPGCPFCAKAKQLLHDK--GLSFEEIILGHDATIVSVRAVSGRTTVPQVFIGGKHI 65


>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia
           coli [TaxId: 562]}
          Length = 76

 Score = 27.0 bits (59), Expect = 0.43
 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 71  LFTKDPCPLCDELKLELTPYLDRVHLEEVYLTPE--SYWYKLYRYEIPVLFLGGRFV 125
           ++T++ C  C   K  +        +  V   PE           ++PV+  G    
Sbjct: 5   IYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRAQGFRQLPVVIAGDLSW 61


>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
           {Escherichia coli, Grx3 [TaxId: 562]}
          Length = 82

 Score = 26.9 bits (59), Expect = 0.48
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 71  LFTKDPCPLCDELKLELTPY---LDRVHLEEVYLTPESYWYKLYRYEIPVLFLGGRFV 125
           ++TK+ CP C   K  L+        + ++      E    +  R  +P +F+  + +
Sbjct: 5   IYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62


>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 134

 Score = 26.1 bits (57), Expect = 1.5
 Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 6/106 (5%)

Query: 61  ITSQRKPMLNLF--TKDPCPLCDELKLELTPYLDRVHLEEVYLTPESYWYKLYRYEIPVL 118
           +T  R  +L +    +      +++   L    + V L  VY     +            
Sbjct: 14  VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFD 73

Query: 119 FLGGRFVCRNRFNAQILMSNECIFQCQEVTMFNEAPRMKTITQITK 164
                F   +  +   ++   C+    EV  F +A   K   +I +
Sbjct: 74  GGHAVFELADSGHHDHMV---CV-DTGEVIEFMDAEIEKRQKEIVR 115


>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase
           {Hyphomicrobium methylovorum [TaxId: 84]}
          Length = 129

 Score = 24.2 bits (52), Expect = 7.8
 Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 1/19 (5%)

Query: 32  AHQKGIVVYNTPE-STMSV 49
              +GI V N P  +T + 
Sbjct: 86  CKARGIKVGNAPHGATQAR 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0511    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 611,661
Number of extensions: 27608
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 13
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.6 bits)