BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17235
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 6/71 (8%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF----HVLSQHLLEIVTYAENAK 56
+QLWDT G+ER S+T+++++ A +L+F L N SF + +SQ L++ Y+EN
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQ--LQMHAYSENPD 129
Query: 57 IFLCGNKSDLE 67
I LCGNKSDLE
Sbjct: 130 IVLCGNKSDLE 140
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER SITS+YY+ A+ ILV+ + +F L + + I YA E+A++ L
Sbjct: 77 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 136
Query: 60 CGNKSDLEGTTPQVTEADMENFWSRRSSRRF 90
GNK D E T ++T E F + + RF
Sbjct: 137 VGNKLDCE-TDREITRQQGEKFAQQITGMRF 166
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 50 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 109
Query: 60 CGNKSDLEGTTPQVTE 75
GNK DL TT +V +
Sbjct: 110 VGNKCDL--TTKKVVD 123
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 57 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 116
Query: 60 CGNKSDLEGTTPQVTE 75
GNK DL TT +V +
Sbjct: 117 VGNKCDL--TTKKVVD 130
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 84 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 143
Query: 60 CGNKSDLEGTTPQVTE 75
GNK DL TT +V +
Sbjct: 144 VGNKCDL--TTKKVVD 157
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 57 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 116
Query: 60 CGNKSDLEGTTPQVTE 75
GNK DL TT +V +
Sbjct: 117 VGNKCDL--TTKKVVD 130
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + S+ + Q L EI YA EN L
Sbjct: 60 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLL 119
Query: 60 CGNKSDLEGTTPQVTE 75
GNKSDL TT +V +
Sbjct: 120 VGNKSDL--TTKKVVD 133
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126
Query: 60 CGNKSDLEGTTPQVTE 75
GNK DL TT +V +
Sbjct: 127 VGNKCDL--TTKKVVD 140
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126
Query: 60 CGNKSDLEGTTPQVTE 75
GNK DL TT +V +
Sbjct: 127 VGNKCDL--TTKKVVD 140
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 76 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 135
Query: 60 CGNKSDLEGTTPQVTE 75
GNK DL TT +V +
Sbjct: 136 VGNKCDL--TTKKVVD 149
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + S+ + Q L EI YA EN L
Sbjct: 60 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLL 119
Query: 60 CGNKSDLEGTTPQVTE 75
GNKSDL TT +V +
Sbjct: 120 VGNKSDL--TTKKVVD 133
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 74 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVIL 133
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 134 VGNKCDME 141
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G+ER +IT++YY+ A IL + + N SF+ + +I TY+ +NA++ L
Sbjct: 59 LQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 118
Query: 60 CGNKSDLE 67
GNK D E
Sbjct: 119 VGNKCDXE 126
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 56 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 115
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 116 VGNKCDME 123
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 49 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 108
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 109 VGNKCDL 115
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G+ER S+T SYY+ A A+LV+ + + +++ L+ L + A +N I L
Sbjct: 59 LQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 118
Query: 60 CGNKSDLE 67
CGNK DL+
Sbjct: 119 CGNKKDLD 126
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF + Q + EI YA EN L
Sbjct: 60 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLL 119
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 120 VGNKCDL 126
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FL 59
+Q+WDT G ER SIT SYY+ A A IL + + SF L + L EI YA N I L
Sbjct: 77 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 137 VGNKIDL 143
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A +L++ + N SF + +I TY+ +NA++ L
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVIL 132
Query: 60 CGNKSDLE 67
GNK DLE
Sbjct: 133 VGNKCDLE 140
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
Q+WDT G+ER +ITS+YY+ A A+LVF L ++ V+ + L E+ +AE + L
Sbjct: 77 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 136
Query: 61 GNKSDL 66
GNKSDL
Sbjct: 137 GNKSDL 142
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
Q+WDT G+ER +ITS+YY+ A A+LVF L ++ V+ + L E+ +AE + L
Sbjct: 62 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV 121
Query: 61 GNKSDL 66
GNKSDL
Sbjct: 122 GNKSDL 127
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER S+T SYY+ A A+LV+ + + +++ L+ L + T A N + L
Sbjct: 76 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVIL 135
Query: 60 CGNKSDLE 67
CGNK DL+
Sbjct: 136 CGNKKDLD 143
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER S+T SYY+ A A+LV+ + + +++ L+ L + A +N I L
Sbjct: 61 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 120
Query: 60 CGNKSDLE 67
CGNK DL+
Sbjct: 121 CGNKKDLD 128
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER S+T SYY+ A A+LV+ + + +++ L+ L + A +N I L
Sbjct: 62 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 121
Query: 60 CGNKSDLE 67
CGNK DL+
Sbjct: 122 CGNKKDLD 129
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 118
Query: 60 CGNKSDLEGTTPQVTE 75
G K DL TT +V +
Sbjct: 119 VGIKCDL--TTKKVVD 132
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
Q+WDT G ER +ITS+YY+ A A+LV+ + SF + + L E+ A+ N I L
Sbjct: 60 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLV 119
Query: 61 GNKSDLE 67
GNKSDL+
Sbjct: 120 GNKSDLK 126
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FL 59
+Q+WDT G ER +ITSSYY+ + I+V+ + + SF+ + L EI YA + + L
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 118
Query: 60 CGNKSDLEGTTPQVTEADM 78
GNK DL+ +V E D+
Sbjct: 119 VGNKCDLK--DKRVVEYDV 135
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FL 59
+Q+WDT G ER +ITSSYY+ + I+V+ + + SF+ + L EI YA + + L
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 118
Query: 60 CGNKSDLEGTTPQVTEADM 78
GNK DL+ +V E D+
Sbjct: 119 VGNKCDLK--DKRVVEYDV 135
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFL 59
+QLWDT G ER +IT++YY+ A ILV+ + + +F + Q + +A + A++ L
Sbjct: 71 LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLL 130
Query: 60 CGNKSDLEGTTPQVTEAD 77
GNKSD+E +V AD
Sbjct: 131 VGNKSDME---TRVVTAD 145
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFL 59
+Q+WDT G ER S+T +YY+ A A +L++ + N ASF + L EI YA+ + + L
Sbjct: 62 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 121
Query: 60 CGNKSD 65
GNK D
Sbjct: 122 LGNKVD 127
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFL 59
+QLWDT G ER +IT++YY+ A ILV+ + + +F + Q + +A + A++ L
Sbjct: 58 LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLL 117
Query: 60 CGNKSDLE 67
GNKSD+E
Sbjct: 118 VGNKSDME 125
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
Q+WDT G+ER +ITS+YY+ A A+LV+ + ++ + + L E+ +A+ N I L
Sbjct: 81 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 140
Query: 61 GNKSDL 66
GNKSDL
Sbjct: 141 GNKSDL 146
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FL 59
+Q+WDT G ER +ITSSYY+ + I+V+ + + SF+ + L EI YA + + L
Sbjct: 72 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 131
Query: 60 CGNKSDLEGTTPQVTEADM 78
GNK DL+ +V E D+
Sbjct: 132 VGNKCDLK--DKRVVEYDV 148
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFL 59
+Q+WDT G ER +IT++YY+ A ILV+ + + +F + Q + +A + A++ L
Sbjct: 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLL 113
Query: 60 CGNKSDLEGTTPQVTEAD 77
GNKSD+E +V AD
Sbjct: 114 VGNKSDME---TRVVTAD 128
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
Q+WDT G+ER +ITS+YY+ A A+LV+ + ++ + + L E+ +A+ N I L
Sbjct: 60 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 119
Query: 61 GNKSDL 66
GNKSDL
Sbjct: 120 GNKSDL 125
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
Q+WDT G+ER +ITS+YY+ A A++V+ + ++S+ + L E+ A +N + L
Sbjct: 62 QIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLI 121
Query: 61 GNKSDL 66
GNKSDL
Sbjct: 122 GNKSDL 127
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFL 59
+QLWDT G ER +IT++YY+ A ILV+ + + +F + Q + +A + A++ L
Sbjct: 54 LQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLL 113
Query: 60 CGNKSDLE 67
GNKSD E
Sbjct: 114 VGNKSDXE 121
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
Q+WDT G+ER +ITS+YY+ A A+LV+ + ++ + + L E+ +A+ N I L
Sbjct: 63 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLV 122
Query: 61 GNKSDL 66
GNKSDL
Sbjct: 123 GNKSDL 128
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFL 59
+Q+WDT G ER +IT++YY+ A ILV+ + + +F + Q + +A + A++ L
Sbjct: 54 LQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLL 113
Query: 60 CGNKSDLE 67
GNKSD E
Sbjct: 114 VGNKSDXE 121
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT SYY+ A AIL + + +SF + + ++ YA N L
Sbjct: 80 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 139
Query: 60 CGNKSDL 66
GNKSDL
Sbjct: 140 IGNKSDL 146
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
Q+WDT G ER +ITS+YY+ A A++V+ + ++S+ + L E+ A +N + L
Sbjct: 65 QIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLI 124
Query: 61 GNKSDL 66
GNKSDL
Sbjct: 125 GNKSDL 130
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
Q+WDT G+ER +ITS+YY+ A A+LV+ + ++ + + L E+ +A+ N I L
Sbjct: 57 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLV 116
Query: 61 GNKSDL 66
GNKSDL
Sbjct: 117 GNKSDL 122
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
Q+WDT G ER +ITS+YY+ A A+LV+ + ++ + + L E+ +A+ N I L
Sbjct: 81 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 140
Query: 61 GNKSDL 66
GNKSDL
Sbjct: 141 GNKSDL 146
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
MQ+WDT G ER S+ + +Y+ ++ +L FS+D++ SF LS E + YA E+
Sbjct: 62 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 121
Query: 56 KIFLCGNKSDLE 67
+ GNK+D++
Sbjct: 122 PFVILGNKTDIK 133
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
Q+WDT G ER ITS+YY+ A A+LV+ + ++ + + L E+ +A+ N I L
Sbjct: 57 QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 116
Query: 61 GNKSDL 66
GNKSDL
Sbjct: 117 GNKSDL 122
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLC 60
Q+WDT G ER +ITS+YY+ A A+LV+ + ++ + + L E+ +A+ N I L
Sbjct: 72 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 131
Query: 61 GNKSDL 66
GNKSDL
Sbjct: 132 GNKSDL 137
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
+QLWDT G ER S+ SY + + A++V+ + N SFH S+ + ++ T + I L
Sbjct: 65 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIML 124
Query: 60 CGNKSDL 66
GNK+DL
Sbjct: 125 VGNKTDL 131
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-AENAKIFL 59
+Q+WDT G E SIT SYY+ A A+LV+ + +F+ L+ L + + + N I L
Sbjct: 72 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIML 131
Query: 60 CGNKSDLE 67
GNKSDLE
Sbjct: 132 IGNKSDLE 139
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER ++T SYY+ A A++V+ + ++++ LS L + N I L
Sbjct: 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 125
Query: 60 CGNKSDLE 67
GNK+DLE
Sbjct: 126 IGNKADLE 133
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF----HVLSQHLLEIVTYAENAK 56
+QLWDT G+ER S+T+++++ A +L+F L + SF + +SQ L+ Y EN
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ--LQANAYCENPD 129
Query: 57 IFLCGNKSDL 66
I L GNK+DL
Sbjct: 130 IVLIGNKADL 139
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF----HVLSQHLLEIVTYAENAK 56
+QLWDT G+ER S+T+++++ A +L+F L + SF + +SQ L+ Y EN
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ--LQANAYCENPD 129
Query: 57 IFLCGNKSDL 66
I L GNK+DL
Sbjct: 130 IVLIGNKADL 139
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G E SIT SYY+ A A+LV+ + +F+ L+ L + ++ N I L
Sbjct: 61 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIML 120
Query: 60 CGNKSDLE 67
GNKSDLE
Sbjct: 121 IGNKSDLE 128
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
+QLWDT G+ER S+ SY + + AA++V+ + N SF ++ + ++ T + I L
Sbjct: 64 LQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 123
Query: 60 CGNKSDL 66
GNK+DL
Sbjct: 124 VGNKTDL 130
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
MQ+WDT G ER S+ + +Y+ ++ +L FS+D++ SF LS E + YA E+
Sbjct: 58 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 117
Query: 56 KIFLCGNKSDL 66
+ GNK D+
Sbjct: 118 PFVILGNKIDI 128
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
MQ+WDT G ER S+ + +Y+ ++ +L FS+D++ SF LS E + YA E+
Sbjct: 60 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 119
Query: 56 KIFLCGNKSDL 66
+ GNK D+
Sbjct: 120 PFVILGNKIDI 130
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF----HVLSQHLLEIVTYAENAK 56
+QLWDT G ER S+T+++++ A +L+F L + SF + +SQ L+ Y EN
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ--LQANAYCENPD 143
Query: 57 IFLCGNKSDLE 67
I L GNK+DL
Sbjct: 144 IVLIGNKADLP 154
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ--HLLEIVTYAENAKIF 58
+QLWDT G+ER S+T+++++ A +L F L + SF + L+ Y EN I
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 59 LCGNKSDL 66
L GNK+DL
Sbjct: 132 LIGNKADL 139
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ--HLLEIVTYAENAKIF 58
+QLWDT G+ER S+T+++++ A +L F L + SF + L+ Y EN I
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 59 LCGNKSDL 66
L GNK+DL
Sbjct: 132 LIGNKADL 139
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+Q+WDT G ER +ITS+YY+ I+V+ + +A SF + + L EI ++ L
Sbjct: 60 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILV 119
Query: 61 GNKSD 65
GNK+D
Sbjct: 120 GNKND 124
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
++WDT G ER S+ YY+ A AAI+VF + N ASF + + E+ N + L
Sbjct: 64 EIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALA 123
Query: 61 GNKSDL 66
GNKSDL
Sbjct: 124 GNKSDL 129
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
+QLWDT G+ER S+ SY + + A++V+ + N SF ++ + ++ T + I L
Sbjct: 57 LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 116
Query: 60 CGNKSDL 66
GNK+DL
Sbjct: 117 VGNKTDL 123
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
+QLWDT G+ER S+ SY + + A++V+ + N SF ++ + ++ T + I L
Sbjct: 67 LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 126
Query: 60 CGNKSDL 66
GNK+DL
Sbjct: 127 VGNKTDL 133
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G R ++T SYY+ A A++V+ + ++++ LS L + N I L
Sbjct: 81 LQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 140
Query: 60 CGNKSDLE 67
GNK+DLE
Sbjct: 141 IGNKADLE 148
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
+QLWDT G ER S+ SY + + AA++V+ + N SF ++ + ++ T + I L
Sbjct: 57 LQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 116
Query: 60 CGNKSDL 66
GNK+DL
Sbjct: 117 VGNKTDL 123
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+WDT G+E+ + YY A+ AI++F + + ++ + ++V EN I LC
Sbjct: 57 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 116
Query: 61 GNKSDLE 67
GNK D++
Sbjct: 117 GNKVDIK 123
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
+WDT G+E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 63 VWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 122
Query: 63 KSDLE 67
K D++
Sbjct: 123 KVDIK 127
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+WDT G+E+ + YY A+ AI++F + + ++ + ++V EN I LC
Sbjct: 63 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 122
Query: 61 GNKSDLE 67
GNK D++
Sbjct: 123 GNKVDIK 129
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 1 MQLWDTGGMERV-ASITSSYYKFAEAAILVFSLDNAASFHVLS-------QHLLEIVTYA 52
+QLWDT G ER S+ YY+ A + V+ + N ASFH L QHLL A
Sbjct: 71 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-----A 125
Query: 53 ENAKIFLCGNKSDL 66
+ L GNK DL
Sbjct: 126 NDIPRILVGNKCDL 139
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
+Q+WDT G ER S+ + +Y+ A+ +L FS+D+ SF L E + YA E+
Sbjct: 58 LQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHF 117
Query: 56 KIFLCGNKSDLEGTTPQVTEAD---MEN 80
+ GNK D E EA MEN
Sbjct: 118 PFVVLGNKVDKEDRQVTTEEAQTWCMEN 145
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
+QLWDT G ER S+ SY + + AAI+V+ + N SF ++ + +I+ ++ I L
Sbjct: 52 LQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIAL 111
Query: 60 CGNKSDL 66
GNK+DL
Sbjct: 112 VGNKTDL 118
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
+QLWDT G ER S+ SY + + A++V+ + N SF S+ + ++ T + I L
Sbjct: 53 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIML 112
Query: 60 CGNKSDL 66
GNK+DL
Sbjct: 113 VGNKTDL 119
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
+QLWDT G ER S+ SY + + A++V+ + N SF ++ + ++ T + I L
Sbjct: 52 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 111
Query: 60 CGNKSDL 66
GNK+DL
Sbjct: 112 VGNKTDL 118
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-- 58
+ +WDT G ER ++T SYY+ A+ ILV+ + +F L L E+ TY I
Sbjct: 66 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNX 125
Query: 59 LCGNKSDLE 67
L GNK D E
Sbjct: 126 LVGNKIDKE 134
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
MQ+WDT G+ER S+ ++Y+ A+ +LVF + +F L E + A EN
Sbjct: 59 MQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 56 KIFLCGNKSDLE 67
+ GNK DLE
Sbjct: 119 PFVVLGNKIDLE 130
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
+WDT G E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 63 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 122
Query: 63 KSDLE 67
K D++
Sbjct: 123 KVDIK 127
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
+WDT G+E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 65 VWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGN 124
Query: 63 KSDLE 67
K D++
Sbjct: 125 KVDVK 129
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+WDT G+E+ + YY A+ AI++F + + ++ + ++V EN I LC
Sbjct: 55 FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 114
Query: 61 GNKSDLE 67
GNK D++
Sbjct: 115 GNKVDVK 121
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+WDT G E+ + YY A+ AI++F + + ++ + ++V EN I LC
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120
Query: 61 GNKSDLE 67
GNK D++
Sbjct: 121 GNKVDIK 127
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
++WDT G+ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L
Sbjct: 57 EIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 116
Query: 61 GNKSDL 66
GNK+DL
Sbjct: 117 GNKADL 122
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
+WDT G E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 63 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 122
Query: 63 KSDLE 67
K D++
Sbjct: 123 KVDIK 127
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+WDT G E+ + YY A+ AI++F + + ++ + ++V EN I LC
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120
Query: 61 GNKSDLE 67
GNK D++
Sbjct: 121 GNKVDIK 127
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+WDT G+E+ + YY A+ AI++F + + ++ + ++V EN I LC
Sbjct: 56 FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 115
Query: 61 GNKSDLE 67
GNK D++
Sbjct: 116 GNKVDVK 122
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
+WDT G E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 63 VWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 122
Query: 63 KSDLE 67
K D++
Sbjct: 123 KVDIK 127
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
+WDT G E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 63 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 122
Query: 63 KSDLE 67
K D++
Sbjct: 123 KVDIK 127
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
+WDT G E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 68 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 127
Query: 63 KSDLE 67
K D++
Sbjct: 128 KVDIK 132
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
+WDT G E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 63 VWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 122
Query: 63 KSDLE 67
K D++
Sbjct: 123 KVDIK 127
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
+WDT G E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 68 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 127
Query: 63 KSDLE 67
K D++
Sbjct: 128 KVDIK 132
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
+WDT G E+ + YY A+ AI++F + + ++ + ++V EN I LCGN
Sbjct: 56 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 115
Query: 63 KSDLE 67
K D++
Sbjct: 116 KVDIK 120
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
++WDT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L
Sbjct: 58 FEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIAL 117
Query: 60 CGNKSDL 66
GNK+DL
Sbjct: 118 SGNKADL 124
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 1 MQLWDTGGMERV-ASITSSYYKFAEAAILVFSLDNAASFHVLS-------QHLLEIVTYA 52
+QLWDT G ER S+ YY+ A + V+ N ASFH L QHLL A
Sbjct: 80 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLL-----A 134
Query: 53 ENAKIFLCGNKSDL 66
+ L GNK DL
Sbjct: 135 NDIPRILVGNKCDL 148
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
++WDT G+ER S+ YY+ A+AAI+V+ + N +F + E+ A N I L
Sbjct: 57 EIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALA 116
Query: 61 GNKSDL 66
GNK+DL
Sbjct: 117 GNKADL 122
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+WDT G E+ + YY A+ AI+ F + + ++ + ++V EN I LC
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120
Query: 61 GNKSDLE 67
GNK D++
Sbjct: 121 GNKVDIK 127
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
++WDT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L
Sbjct: 58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 117
Query: 61 GNKSDL 66
GNK+DL
Sbjct: 118 GNKADL 123
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
++WDT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L
Sbjct: 58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 117
Query: 61 GNKSDL 66
GNK+DL
Sbjct: 118 GNKADL 123
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
++WDT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L
Sbjct: 58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 117
Query: 61 GNKSDL 66
GNK+DL
Sbjct: 118 GNKADL 123
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
++WDT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L
Sbjct: 58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 117
Query: 61 GNKSDL 66
GNK+DL
Sbjct: 118 GNKADL 123
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
++WDT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L
Sbjct: 59 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 118
Query: 61 GNKSDL 66
GNK+DL
Sbjct: 119 GNKADL 124
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
++WDT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L
Sbjct: 58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 117
Query: 61 GNKSDL 66
GNK+DL
Sbjct: 118 GNKADL 123
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
MQ+WDT G ER S+ ++Y+ A+ +LVF + +F L E + A EN
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 56 KIFLCGNKSDLE 67
+ GNK DLE
Sbjct: 119 PFVVLGNKIDLE 130
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
++WDT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L
Sbjct: 58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 117
Query: 61 GNKSDL 66
GNK+DL
Sbjct: 118 GNKADL 123
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+ LWDT G E +IT +YY+ A+A +LVFS + SF +S ++V + L
Sbjct: 56 LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALV 115
Query: 61 GNKSDL 66
NK DL
Sbjct: 116 QNKIDL 121
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
MQ+WDT G ER S+ ++Y+ A+ +LVF + +F L E + A EN
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 56 KIFLCGNKSDLE 67
+ GNK DLE
Sbjct: 119 PFVVLGNKIDLE 130
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
MQ+WDT G ER S+ ++Y+ A+ +LV+ + NA+SF + E + +A E
Sbjct: 60 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119
Query: 56 KIFLCGNKSDLEGTTPQVTE 75
+ GNK D E + V+E
Sbjct: 120 PFVILGNKIDAEESKKIVSE 139
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
++WDT G ER S+ YY+ A+AAI+V+ + N +F + E+ A N I L
Sbjct: 57 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALA 116
Query: 61 GNKSDL 66
GNK+DL
Sbjct: 117 GNKADL 122
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
++WDT G ER S+ YY+ A+AAI+V+ + N +F + E+ A N I L
Sbjct: 55 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALA 114
Query: 61 GNKSDL 66
GNK+DL
Sbjct: 115 GNKADL 120
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
MQ+WDT G ER S+ ++Y+ A+ +LVF + +F L E + A EN
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 56 KIFLCGNKSDLE 67
+ GNK D E
Sbjct: 119 PFVVLGNKIDFE 130
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCG 61
+WDT G ER S+ YY+ + AA++V+ + SF+ L + + E+ + EN + + G
Sbjct: 76 IWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAG 135
Query: 62 NKSDL 66
NK DL
Sbjct: 136 NKCDL 140
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFL 59
+Q+WDT G ER +IT++YY+ A +LV+ + N SF + + I +A + + +
Sbjct: 57 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMI 116
Query: 60 CGNKSDL 66
GNK D+
Sbjct: 117 LGNKCDV 123
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFL 59
+Q+WDT G ER +IT++YY+ A +LV+ + N SF + + I +A + + +
Sbjct: 59 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMI 118
Query: 60 CGNKSDL 66
GNK D+
Sbjct: 119 LGNKCDV 125
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LC 60
++WDT G ER S+ YY+ A+AAI+V+ + N +F + E+ A + + L
Sbjct: 60 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALA 119
Query: 61 GNKSDL 66
GNK+DL
Sbjct: 120 GNKADL 125
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+QLWDT G ER SI SY++ A+ +L++ + SF + + + I A E I L
Sbjct: 79 LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIML 138
Query: 60 CGNKSDLEGT 69
GNK+D+ T
Sbjct: 139 VGNKADIRDT 148
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + + Y+ A+ +L FSL + AS+ +VL + + E+ +A N I L
Sbjct: 59 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVL 118
Query: 60 CGNKSDLE 67
G K DL
Sbjct: 119 VGTKLDLR 126
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCG 61
+WDT G+ER ++ YY+ + AAI+V+ + +F L + E+ + + + + G
Sbjct: 59 IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG 118
Query: 62 NKSDLEGTTPQVTEADMENF 81
NK DL +V E D +++
Sbjct: 119 NKCDLTDVR-EVMERDAKDY 137
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G+E A+I +Y++ E + VFS+ SF + +I V EN
Sbjct: 56 IDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 115
Query: 59 LCGNKSDLE 67
L GNKSDLE
Sbjct: 116 LVGNKSDLE 124
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIV--TYAENAKIF 58
++WDT G ER AS+ YY+ A+AA++V+ + SF + ++H ++ + +++ I
Sbjct: 54 FEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSF-IKARHWVKELHEQASKDIIIA 112
Query: 59 LCGNKSD 65
L GNK D
Sbjct: 113 LVGNKID 119
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DTGG E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKI 57
+ + DT G+E A+I +Y++ E +LVFS+ SF + + +L + + +
Sbjct: 57 IDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPL 116
Query: 58 FLCGNKSDLE 67
+ GNKSDLE
Sbjct: 117 LVVGNKSDLE 126
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKI 57
+ + DT G+E A+I +Y++ E +LVFS+ SF + + +L + + +
Sbjct: 53 IDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPL 112
Query: 58 FLCGNKSDLE 67
+ GNKSDLE
Sbjct: 113 LVVGNKSDLE 122
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E A+I +Y++ E + VFS+ SF + +I V EN
Sbjct: 64 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 123
Query: 59 LCGNKSDLE 67
L GNKSDLE
Sbjct: 124 LVGNKSDLE 132
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCG 61
+WDT G ER ++ YY+ + AAI+V+ + +F L + E+ + + + + G
Sbjct: 58 IWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG 117
Query: 62 NKSDLEGTTPQVTEADMENF 81
NK DL +V E D +++
Sbjct: 118 NKCDLTDVR-EVMERDAKDY 136
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+ +WDT G ER ++ YY+ + AILV+ + + SF + + E+ N +I LC
Sbjct: 57 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-EICLC 115
Query: 61 --GNKSDLE 67
GNK DLE
Sbjct: 116 IVGNKIDLE 124
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNKSDL T + +A
Sbjct: 113 LVGNKSDLAARTVESRQA 130
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL G T + +A
Sbjct: 113 LVGNKCDLAGRTVESRQA 130
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+ +WDT G ER ++ YY+ + AILV+ + + SF + + E+ N +I LC
Sbjct: 71 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-EICLC 129
Query: 61 --GNKSDLE 67
GNK DLE
Sbjct: 130 IVGNKIDLE 138
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E A+I +Y++ E + VFS+ SF + +I V EN
Sbjct: 68 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 127
Query: 59 LCGNKSDLE 67
L GNKSDLE
Sbjct: 128 LVGNKSDLE 136
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E A+I +Y++ E + VFS+ SF + +I V EN
Sbjct: 56 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 115
Query: 59 LCGNKSDLE 67
L GNKSDLE
Sbjct: 116 LVGNKSDLE 124
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+ +WDT G ER ++ YY+ + AILV+ + + SF + + E+ N +I LC
Sbjct: 57 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-EICLC 115
Query: 61 --GNKSDLE 67
GNK DLE
Sbjct: 116 IVGNKIDLE 124
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNKSDL T + +A
Sbjct: 113 LVGNKSDLAARTVESRQA 130
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + + +I V +E+ +
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNKSDL T +A
Sbjct: 114 LVGNKSDLPSRTVDTKQA 131
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + + +I V +E+ +
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNKSDL T +A
Sbjct: 114 LVGNKSDLPSRTVDTKQA 131
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E A+I +Y++ E + VFS+ SF + +I V EN
Sbjct: 54 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 113
Query: 59 LCGNKSDLE 67
L GNKSDLE
Sbjct: 114 LVGNKSDLE 122
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH---VLSQHLLEIVTYAENAKI 57
+++ DT G E+ AS+ Y K + ILV+SL N SF + ++ + Y E +
Sbjct: 53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPV 111
Query: 58 FLCGNKSDL 66
L GNK DL
Sbjct: 112 ILVGNKVDL 120
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G+E + Y + ++ FSL + ASF HV ++ E+ + N I L
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL 264
Query: 60 CGNKSDL 66
G K DL
Sbjct: 265 VGTKLDL 271
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G+E + Y + ++ FSL + ASF HV ++ E+ + N I L
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL 264
Query: 60 CGNKSDL 66
G K DL
Sbjct: 265 VGTKLDL 271
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G+E + Y + ++ FSL + ASF HV ++ E+ + N I L
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL 264
Query: 60 CGNKSDL 66
G K DL
Sbjct: 265 VGTKLDL 271
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + + +I V +E+ +
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNKSDL T +A
Sbjct: 114 LVGNKSDLPSRTVDTKQA 131
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62
+WDT G ER ASI YY+ A AI+VF + N+ + ++ + + + N I L N
Sbjct: 97 IWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLD-RAKTWVNQLKISSNYIIILVAN 155
Query: 63 KSD 65
K D
Sbjct: 156 KID 158
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G+E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y+ A+ IL FSL + AS+ +V + + E+ YA I L
Sbjct: 56 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIIL 115
Query: 60 CGNKSDL 66
G K DL
Sbjct: 116 VGTKLDL 122
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G+E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G+E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 58 LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 118 LVGNKCDLAARTVESRQA 135
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G+E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 58 LALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 117
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 118 VGNKKDL 124
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G+E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQH-LLEIVTYAENAKIFL 59
+ LWDT G E + Y+ A+ IL FSL + AS+ +S+ + E+ YA I L
Sbjct: 58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVL 117
Query: 60 CGNKSDL 66
G K DL
Sbjct: 118 VGTKLDL 124
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 115 VGNKKDL 121
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 59 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 118
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 119 LVGNKCDLAARTVESRQA 136
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 118 LVGNKCDLAARTVESRQA 135
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 118 LVGNKCDLAARTVESRQA 135
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 53 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 112
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 113 VGNKKDL 119
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 53 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 112
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 113 VGNKKDL 119
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 115 VGNKKDL 121
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 115 VGNKKDL 121
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 115 VGNKKDL 121
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + + +I V +E+ +
Sbjct: 71 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 130
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T +A
Sbjct: 131 LVGNKCDLPSRTVDTKQA 148
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 55 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 115 VGNKKDL 121
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 60 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 119
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 120 LVGNKCDLAARTVESRQA 137
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 56 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 115
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 116 VGNKKDL 122
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 58 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 117
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 118 VGNKKDL 124
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 57 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 116
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 117 VGNKKDL 123
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 56 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 115
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 116 VGNKKDL 122
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 57 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 116
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 117 VGNKKDL 123
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 59 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 118
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 119 VGNKKDL 125
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 57 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 116
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 117 VGNKKDL 123
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GN+ DL T + +A
Sbjct: 113 LVGNRCDLAARTVESRQA 130
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + + +I V +E+ +
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T +A
Sbjct: 114 LVGNKCDLPSRTVDTKQA 131
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKCDLAARTVESRQA 130
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y+ A+ +L FSL + AS+ ++ + L E+ YA I L
Sbjct: 56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVL 115
Query: 60 CGNKSDLE 67
G K DL
Sbjct: 116 VGTKLDLR 123
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 134
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 135 VGNKKDL 141
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIIL 134
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 135 VGNKKDL 141
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + +++ FSL + ASF +V ++ E+ + N I L
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
Query: 60 CGNKSDL 66
G K DL
Sbjct: 113 VGTKLDL 119
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G+E + Y + ++ FSL + ASF +V ++ E+ + N I L
Sbjct: 53 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
Query: 60 CGNKSDL 66
G K DL
Sbjct: 113 VGTKLDL 119
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G+E + Y + ++ FSL + ASF +V ++ E+ + N I L
Sbjct: 53 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
Query: 60 CGNKSDL 66
G K DL
Sbjct: 113 VGTKLDL 119
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + +++ FSL + ASF +V ++ E+ + N I L
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
Query: 60 CGNKSDL 66
G K DL
Sbjct: 113 VGTKLDL 119
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + +++ FSL + ASF +V ++ E+ + N I L
Sbjct: 55 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 114
Query: 60 CGNKSDL 66
G K DL
Sbjct: 115 VGTKLDL 121
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + +++ FSL + ASF +V ++ E+ + N I L
Sbjct: 57 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 116
Query: 60 CGNKSDL 66
G K DL
Sbjct: 117 VGTKLDL 123
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E Y + ++ FS+D+ S ++ + E+ + N I L
Sbjct: 55 LALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 114
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 115 VGNKKDL 121
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFL 59
+WDT G E+ A + YY A AIL F + + + L++ + E N A I +
Sbjct: 63 FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122
Query: 60 CGNKSDLE 67
C NK D++
Sbjct: 123 CANKIDIK 130
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKXDLAARTVESRQA 130
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT E +++ Y + E + VF+++N SF + Q+ +I V +++ +
Sbjct: 53 LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T + +A
Sbjct: 113 LVGNKXDLAARTVESRQA 130
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G+E + Y + ++ FSL + ASF +V ++ E+ + N I L
Sbjct: 56 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 115
Query: 60 CGNKSDL 66
G K DL
Sbjct: 116 VGTKLDL 122
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E +++ Y + E + VF+++N+ SF ++ + +I V +++ +
Sbjct: 71 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130
Query: 59 LCGNKSDLEGTTPQVTEA 76
L GNK DL T +A
Sbjct: 131 LVGNKCDLPTRTVDTKQA 148
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G+E + Y + ++ FSL + ASF +V ++ E+ + N I L
Sbjct: 80 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 139
Query: 60 CGNKSDL 66
G K DL
Sbjct: 140 VGTKLDL 146
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL-LEIVTYAENAKIFL 59
+ LWDT G E + Y ++ +L F+++N SF +S EI Y + AK L
Sbjct: 73 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVL 132
Query: 60 CGNKSDL 66
G K DL
Sbjct: 133 VGLKVDL 139
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + ASF +V ++ E+ + N I L
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
Query: 60 CGNKSDL 66
G K DL
Sbjct: 113 VGTKLDL 119
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S ++ + + E+ + N I L
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIIL 134
Query: 60 CGNKSDL 66
NK DL
Sbjct: 135 VANKKDL 141
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL-LEIVTYAENAKIFL 59
+ LWDT G E + Y ++ +L F+++N SF +S EI Y + AK L
Sbjct: 72 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVL 131
Query: 60 CGNKSDL 66
G K DL
Sbjct: 132 VGLKVDL 138
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E ++ Y + +LVF++++ SF+ + + +I V ++ +
Sbjct: 59 LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV 118
Query: 59 LCGNKSDLEGTTPQVTEADMENFWS 83
L GNK+DLE QV ++ F +
Sbjct: 119 LVGNKADLESQR-QVPRSEASAFGA 142
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + ASF +V ++ E+ + N I L
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
Query: 60 CGNKSDL 66
G K DL
Sbjct: 113 VGTKLDL 119
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + ASF +V ++ E+ + N I L
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
Query: 60 CGNKSDL 66
G K DL
Sbjct: 113 VGTKLDL 119
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + ASF +V ++ E+ + N I L
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
Query: 60 CGNKSDL 66
G K DL
Sbjct: 113 VGTKLDL 119
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + ASF +V ++ E+ + N I L
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
Query: 60 CGNKSDL 66
G K DL
Sbjct: 113 VGTKLDL 119
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + ASF +V ++ E+ + N I L
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
Query: 60 CGNKSDL 66
G K DL
Sbjct: 113 VGTKLDL 119
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + ASF +V ++ E+ + N I L
Sbjct: 80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 139
Query: 60 CGNKSDL 66
G K DL
Sbjct: 140 VGTKLDL 146
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + ASF +V ++ E+ + N I L
Sbjct: 80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 139
Query: 60 CGNKSDL 66
G K DL
Sbjct: 140 VGTKLDL 146
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + ASF +V ++ E+ + N I L
Sbjct: 63 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 122
Query: 60 CGNKSDL 66
G K DL
Sbjct: 123 VGTKLDL 129
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + ASF +V ++ E+ + N I L
Sbjct: 60 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 119
Query: 60 CGNKSDL 66
G K DL
Sbjct: 120 VGTKLDL 126
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + ASF +V ++ E+ + N I L
Sbjct: 72 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 131
Query: 60 CGNKSDL 66
G K DL
Sbjct: 132 VGTKLDL 138
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK--IF 58
+ + DT G E ++ Y + E +LVFS+ + SF + + +I+ + + +
Sbjct: 55 LDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMI 114
Query: 59 LCGNKSDLEGTTPQVTE 75
L GNK+DL+ QVT+
Sbjct: 115 LIGNKADLDHQR-QVTQ 130
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D S +V + + E++ + + I L
Sbjct: 60 LALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIIL 119
Query: 60 CGNKSDLEGTTPQVTE 75
G K DL PQ E
Sbjct: 120 VGCKVDLR-NDPQTIE 134
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ L+DT G E + Y + ++ FS+ N ASF +V + + E+ YA N L
Sbjct: 68 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLL 127
Query: 60 CGNKSDL 66
G + DL
Sbjct: 128 IGTQIDL 134
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G ++ Y ++A ++ F + + VL + EI + N K+ L
Sbjct: 73 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 132
Query: 60 CGNKSDL 66
G KSDL
Sbjct: 133 VGCKSDL 139
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK---- 56
+Q+WD GG + Y A+ +LV+ + N SF L + +E ++
Sbjct: 58 LQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL 117
Query: 57 IFLCGNKSDLE 67
+ L GNK DLE
Sbjct: 118 VALVGNKIDLE 128
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+++ DT G E+ ++ Y K + LV+S+ ++F+ L +I V E+ +
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI 112
Query: 59 LCGNKSDLE 67
L GNK DLE
Sbjct: 113 LVGNKCDLE 121
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+++ DT G E+ ++ Y K + LV+S+ ++F+ L +I V E+ +
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI 112
Query: 59 LCGNKSDLE 67
L GNK DLE
Sbjct: 113 LVGNKCDLE 121
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + ASF +V ++ E+ + + I L
Sbjct: 54 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILL 113
Query: 60 CGNKSDL 66
G K DL
Sbjct: 114 VGTKLDL 120
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + ASF +V ++ E+ + + I L
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILL 112
Query: 60 CGNKSDL 66
G K DL
Sbjct: 113 VGTKLDL 119
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + ASF +V ++ E+ + + I L
Sbjct: 54 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILL 113
Query: 60 CGNKSDL 66
G K DL
Sbjct: 114 VGTKLDL 120
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G ++ Y ++A ++ F + + VL + EI + N K+ L
Sbjct: 78 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 137
Query: 60 CGNKSDL 66
G KSDL
Sbjct: 138 VGCKSDL 144
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQH-LLEIVTYAENAKIFL 59
+QL DT G + + Y + +L FS+ + +SF +S+ + EI + A I L
Sbjct: 70 LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIIL 129
Query: 60 CGNKSDL 66
G +SDL
Sbjct: 130 VGTQSDL 136
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G ++ Y ++A ++ F + + VL + EI + N K+ L
Sbjct: 57 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 116
Query: 60 CGNKSDL 66
G KSDL
Sbjct: 117 VGCKSDL 123
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G ++ Y ++A +L F + + L + EI+ Y + ++ L
Sbjct: 61 LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLL 120
Query: 60 CGNKSDL 66
G K+DL
Sbjct: 121 IGCKTDL 127
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + AS+ +V ++ E+ + + I L
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIIL 112
Query: 60 CGNKSDL 66
G K DL
Sbjct: 113 VGTKLDL 119
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G ++ Y ++A +L F + + L + EI+ Y + ++ L
Sbjct: 60 LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLL 119
Query: 60 CGNKSDL 66
G K+DL
Sbjct: 120 IGCKTDL 126
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G ++ Y ++A +L F + + L + EI+ Y + ++ L
Sbjct: 77 LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLL 136
Query: 60 CGNKSDL 66
G K+DL
Sbjct: 137 IGCKTDL 143
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+++ DT G E+ ++ Y K + LV+S+ ++F+ L +I V ++ +
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMI 112
Query: 59 LCGNKSDLE 67
L GNK DLE
Sbjct: 113 LVGNKCDLE 121
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLS-QHLLEIVTYAENAKIF 58
M++ DT G E + ++ E +LV+ + + SF VL +++L+ + +N +
Sbjct: 78 MEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI 136
Query: 59 LCGNKSDLEGTTPQVTE 75
L GNK+DL+ + TE
Sbjct: 137 LVGNKADLDHSRQVSTE 153
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + AS+ +V ++ E+ + + I L
Sbjct: 59 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIIL 118
Query: 60 CGNKSDL 66
G K DL
Sbjct: 119 VGTKLDL 125
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+++ DT G E+ ++ Y K + LV+S+ ++F+ L +I V ++ +
Sbjct: 55 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMI 114
Query: 59 LCGNKSDLE 67
L GNK DLE
Sbjct: 115 LVGNKCDLE 123
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + AS+ +V ++ E+ + + I L
Sbjct: 60 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIIL 119
Query: 60 CGNKSDL 66
G K DL
Sbjct: 120 VGTKLDL 126
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKI 57
+QL DT G + + +Y ILV+S+ + SF V+ LL++V + I
Sbjct: 56 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IPI 114
Query: 58 FLCGNKSDL 66
L GNK DL
Sbjct: 115 MLVGNKKDL 123
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKI 57
+QL DT G + + +Y ILV+S+ + SF V+ LL++V + I
Sbjct: 56 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IPI 114
Query: 58 FLCGNKSDL 66
L GNK DL
Sbjct: 115 MLVGNKKDL 123
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKI 57
+QL DT G + + +Y ILV+S+ + SF V+ LL++V + I
Sbjct: 54 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IPI 112
Query: 58 FLCGNKSDL 66
L GNK DL
Sbjct: 113 MLVGNKKDL 121
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEI-VTYAENAKIF 58
+ + DT G E +++ Y + + ++V+S+ + ASF HV H L + V E+ +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 59 LCGNKSDL 66
L NK DL
Sbjct: 128 LVANKVDL 135
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKI 57
+QL DT G + + +Y ILV+S+ + SF V+ LL++V + I
Sbjct: 51 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IPI 109
Query: 58 FLCGNKSDL 66
L GNK DL
Sbjct: 110 MLVGNKKDL 118
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEI-VTYAENAKIF 58
+ + DT G E +++ Y + + ++V+S+ + ASF HV H L + V E+ +
Sbjct: 63 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 122
Query: 59 LCGNKSDL 66
L NK DL
Sbjct: 123 LVANKVDL 130
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEI-VTYAENAKIF 58
+ + DT G E +++ Y + + ++V+S+ + ASF HV H L + V E+ +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 59 LCGNKSDL 66
L NK DL
Sbjct: 128 LVANKVDL 135
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEI-VTYAENAKIF 58
+ + DT G E +++ Y + + ++V+S+ + ASF HV H L + V E+ +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 59 LCGNKSDL 66
L NK DL
Sbjct: 128 LVANKVDL 135
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ +WDT G + + +Y A +L F + + SF ++ ++ E+ + + I +
Sbjct: 84 LHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIV 143
Query: 60 CGNKSDL 66
G K+DL
Sbjct: 144 VGCKTDL 150
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG++++ + YY + I V + Q L I+ E +A I +
Sbjct: 50 VWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 109
Query: 61 GNKSDLE 67
NK DL
Sbjct: 110 ANKQDLP 116
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG++++ + YY + I V + Q L I+ E +A I +
Sbjct: 61 VWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 61 GNKSDLE 67
NK DL
Sbjct: 121 ANKQDLP 127
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG++++ + YY + I V + Q L I+ E +A I +
Sbjct: 51 VWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 110
Query: 61 GNKSDLE 67
NK DL
Sbjct: 111 ANKQDLP 117
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +R+ S+ YY+ E I V ++ + + + ++ E NA +
Sbjct: 48 VWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVF 107
Query: 61 GNKSDL 66
NK DL
Sbjct: 108 ANKQDL 113
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +R+ S+ YY+ E I V ++ + + + ++ E NA +
Sbjct: 65 VWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVF 124
Query: 61 GNKSDL 66
NK DL
Sbjct: 125 ANKQDL 130
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +++ + YY+ +A I V ++ + L++++ E NA + +
Sbjct: 65 VWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVF 124
Query: 61 GNKSDLEGTTPQ 72
NK DL PQ
Sbjct: 125 ANKHDL----PQ 132
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +R+ S+ YY+ E I V ++ + + + ++ E NA +
Sbjct: 65 VWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVF 124
Query: 61 GNKSDL 66
NK DL
Sbjct: 125 ANKQDL 130
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG E + S ++YY E ILV + + + L ++ + + A + +
Sbjct: 64 MWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIF 123
Query: 61 GNKSDLEG 68
NK D++G
Sbjct: 124 ANKQDMKG 131
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +++ + YY + I V + Q L I+ E +A I +
Sbjct: 48 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 107
Query: 61 GNKSDLE 67
NK DL
Sbjct: 108 ANKQDLP 114
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +++ + YY + I V + Q L I+ E +A I +
Sbjct: 60 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 119
Query: 61 GNKSDLE 67
NK DL
Sbjct: 120 ANKQDLP 126
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +++ + YY + I V + Q L I+ E +A I +
Sbjct: 48 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIF 107
Query: 61 GNKSDLE 67
NK DL
Sbjct: 108 ANKQDLP 114
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +++ + YY + I V + Q L I+ E +A I +
Sbjct: 61 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 61 GNKSDLE 67
NK DL
Sbjct: 121 ANKQDLP 127
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +++ + YY + I V + Q L I+ E +A I +
Sbjct: 48 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 107
Query: 61 GNKSDLE 67
NK DL
Sbjct: 108 ANKQDLP 114
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 21 KFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNKSDL 66
+ +A ++V+S+ + ASF S+ +++ E+ I L GNKSDL
Sbjct: 79 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 126
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 21 KFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNKSDL 66
+ +A ++V+S+ + ASF S+ +++ E+ I L GNKSDL
Sbjct: 79 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 126
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +++ + YY + I V + Q L I+ E +A I +
Sbjct: 370 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 429
Query: 61 GNKSDLE 67
NK DL
Sbjct: 430 ANKQDLP 436
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ----HLLEIVTYAENAK 56
++LWD GG R S+ Y + A +V+ +D A + + H L +
Sbjct: 69 IKLWDIGGQPRFRSMWERYCRGVSA--IVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 126
Query: 57 IFLCGNKSDLEG 68
+ + GNK DL G
Sbjct: 127 VLVLGNKRDLPG 138
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +R+ + Y++ + I V ++ ++ L +++ E +A + L
Sbjct: 65 VWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLF 124
Query: 61 GNKSDLE 67
NK DL
Sbjct: 125 ANKQDLP 131
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 30.0 bits (66), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKI 57
+Q+ DT G + ++ A ILVFS+ + S L + +++I E+ +
Sbjct: 58 LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117
Query: 58 FLCGNKSD 65
L GNK D
Sbjct: 118 MLVGNKCD 125
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ----HLLEIVTYAENAK 56
++LWD GG R S+ Y + A +V+ +D A + + H L +
Sbjct: 78 IKLWDIGGQPRFRSMWERYCRGVSA--IVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 135
Query: 57 IFLCGNKSDLEG 68
+ + GNK DL G
Sbjct: 136 VLVLGNKRDLPG 147
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 21 KFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNKSDL 66
+ +A ++V+S+ + ASF S+ +++ E+ I L GNKSDL
Sbjct: 110 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 157
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG E + S ++YY E I+V + V + L +++ + + A + +
Sbjct: 64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 123
Query: 61 GNKSDLE 67
NK D++
Sbjct: 124 ANKQDVK 130
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG E + S ++YY E I+V + V + L +++ + + A + +
Sbjct: 70 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 129
Query: 61 GNKSDLE 67
NK D++
Sbjct: 130 ANKQDVK 136
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG E + S ++YY E I+V + V + L +++ + + A + +
Sbjct: 64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 123
Query: 61 GNKSDLE 67
NK D++
Sbjct: 124 ANKQDVK 130
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG E + S ++YY E I+V + V + L +++ + + A + +
Sbjct: 69 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 128
Query: 61 GNKSDLE 67
NK D++
Sbjct: 129 ANKQDVK 135
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 21 KFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNKSDL 66
+ +A ++V+S+ + ASF S+ +++ E+ I L GNKSDL
Sbjct: 79 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 126
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILV 29
+WD GG +R+ S+ YY E I V
Sbjct: 65 VWDVGGQDRIRSLWRHYYCNTEGVIFV 91
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 51 YAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRF 90
+ N K+ L GNK+DL P+ + D W R S+++
Sbjct: 93 FVGNNKVLLVGNKADL---IPKSVKHDKVKHWXRYSAKQL 129
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHV---LSQHLLEIVTYAENAKI 57
+ L DT G + + + S+ +LV+S+ + SF V L Q L E +
Sbjct: 74 LHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPV 132
Query: 58 FLCGNKSDL 66
L GNK+DL
Sbjct: 133 VLVGNKADL 141
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ L+DT G+E + Y + ++ FS+ + +SF +V + + EI + L
Sbjct: 53 LGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL 112
Query: 60 CGNKSDL 66
G + DL
Sbjct: 113 VGTQIDL 119
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +++ + YY + I V ++ + L ++ E +A I +
Sbjct: 65 VWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVF 124
Query: 61 GNKSDLEG--TTPQVTE 75
NK DL + +VTE
Sbjct: 125 ANKQDLPNAMSAAEVTE 141
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +++ + Y++ + I V ++ + + L+ ++ E +A + +
Sbjct: 213 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF 272
Query: 61 GNKSDL 66
NK DL
Sbjct: 273 ANKQDL 278
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG++++ + Y++ + I V ++ + + L+ ++ E +A + +
Sbjct: 50 VWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF 109
Query: 61 GNKSDL 66
NK DL
Sbjct: 110 ANKQDL 115
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ L+DT G+E + Y + ++ FS+ + +SF +V + + EI + L
Sbjct: 57 LGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL 116
Query: 60 CGNKSDL 66
G + DL
Sbjct: 117 VGTQIDL 123
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA 35
+ +WD GG+ ++ SY F IL++ +D+A
Sbjct: 50 LNVWDIGGLRKIRPYWRSY--FENTDILIYVIDSA 82
>pdb|1KQF|A Chain A, Formate Dehydrogenase N From E. Coli
pdb|1KQG|A Chain A, Formate Dehydrogenase N From E. Coli
Length = 1015
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 63 KSDLEGTTPQVTEADMENFWS 83
+S LE TP+ T AD N+WS
Sbjct: 479 QSYLEANTPKATLADQVNYWS 499
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +++ + Y++ + I V ++ + + L+ ++ E +A + +
Sbjct: 48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF 107
Query: 61 GNKSDL 66
NK DL
Sbjct: 108 ANKQDL 113
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +++ + Y++ + I V ++ + + L+ ++ E +A + +
Sbjct: 64 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF 123
Query: 61 GNKSDL 66
NK DL
Sbjct: 124 ANKQDL 129
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 18 SYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNKSDL 66
S + A ++V+S+ + SF S+ +++ A++ I L GNK+DL
Sbjct: 73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA------ASFHVLSQHLLEIVTYAEN 54
+++WD GG R S+ Y + A +V+ +D A AS + L H L +
Sbjct: 69 IKIWDIGGQPRFRSMWERYCRGVNA--IVYMIDAADREKIEASRNEL--HNLLDKPQLQG 124
Query: 55 AKIFLCGNKSDLE 67
+ + GNK DL
Sbjct: 125 IPVLVLGNKRDLP 137
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +++ + Y++ + I V ++ + + L+ ++ E +A + +
Sbjct: 65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVF 124
Query: 61 GNKSDL 66
NK DL
Sbjct: 125 ANKQDL 130
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA 35
+ +WD GG ++ SY F IL++ +D+A
Sbjct: 62 LNVWDIGGQRKIRPYWRSY--FENTDILIYVIDSA 94
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
Length = 189
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA 35
+ +WD GG ++ SY F IL++ +D+A
Sbjct: 63 LNVWDIGGQRKIRPYWRSY--FENTDILIYVIDSA 95
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC- 60
Q+WD GG+ + YY +A I V + + L+ ++ E K L
Sbjct: 51 QVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVV 110
Query: 61 -GNKSDLEGTTPQVTEADMEN 80
NK D+E +T ++M N
Sbjct: 111 FANKQDME---QAMTSSEMAN 128
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA 35
+ +WD GG ++ SY F IL++ +D+A
Sbjct: 50 LNVWDIGGQRKIRPYWRSY--FENTDILIYVIDSA 82
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLC 60
+WD GG +++ + Y++ + I V ++ + L +++ E +A + +
Sbjct: 77 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVF 136
Query: 61 GNKSDLEGTTP 71
NK D+ P
Sbjct: 137 ANKQDMPNAMP 147
>pdb|2AH6|A Chain A, Crystal Structure Of A Putative Cobalamin
Adenosyltransferase (Bh1595) From Bacillus Halodurans
C-125 At 1.60 A Resolution
pdb|2AH6|B Chain B, Crystal Structure Of A Putative Cobalamin
Adenosyltransferase (Bh1595) From Bacillus Halodurans
C-125 At 1.60 A Resolution
pdb|2AH6|C Chain C, Crystal Structure Of A Putative Cobalamin
Adenosyltransferase (Bh1595) From Bacillus Halodurans
C-125 At 1.60 A Resolution
Length = 208
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 121 KAKEELNDFKERRVEAFKKNLMEL 144
KAK+E+ DF E+R++A+ K EL
Sbjct: 97 KAKQEIVDFLEQRIDAYIKEAPEL 120
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT--YAENAKIF 58
+ +WD GG++ + S +Y++ + I V + + L ++ A +
Sbjct: 47 LNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL 106
Query: 59 LCGNKSDLEG 68
+ NK DL G
Sbjct: 107 IFANKQDLPG 116
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC- 60
Q+WD GG + YY +A I V + + L+ ++ E K L
Sbjct: 49 QVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVV 108
Query: 61 -GNKSDLEGTTPQVTEADMEN 80
NK D+E +T ++M N
Sbjct: 109 FANKQDME---QAMTPSEMAN 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.128 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,908,099
Number of Sequences: 62578
Number of extensions: 118149
Number of successful extensions: 866
Number of sequences better than 100.0: 315
Number of HSP's better than 100.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 315
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)