BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17235
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R613|SNX6_PONAB Sorting nexin-6 OS=Pongo abelii GN=SNX6 PE=2 SV=1
Length = 406
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 54/68 (79%)
Query: 99 QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
++V++AE QQ C KFE++S+ AK+EL DFK RRV AF+KNL+ELAELE+KHA+ + +
Sbjct: 335 KDVLQAETSQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQL 394
Query: 159 LKKCLAEL 166
L+ CLA L
Sbjct: 395 LQNCLAVL 402
>sp|Q6P8X1|SNX6_MOUSE Sorting nexin-6 OS=Mus musculus GN=Snx6 PE=1 SV=2
Length = 406
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 54/68 (79%)
Query: 99 QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
++V++AE QQ C KFE++S+ AK+EL DFK RRV AF+KNL+ELAELE+KHA+ + +
Sbjct: 335 KDVLQAETSQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQL 394
Query: 159 LKKCLAEL 166
L+ CLA L
Sbjct: 395 LQNCLAVL 402
>sp|Q9UNH7|SNX6_HUMAN Sorting nexin-6 OS=Homo sapiens GN=SNX6 PE=1 SV=1
Length = 406
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 54/68 (79%)
Query: 99 QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
++V++AE QQ C KFE++S+ AK+EL DFK RRV AF+KNL+ELAELE+KHA+ + +
Sbjct: 335 KDVLQAETSQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQL 394
Query: 159 LKKCLAEL 166
L+ CLA L
Sbjct: 395 LQNCLAVL 402
>sp|Q86XE0|SNX32_HUMAN Sorting nexin-32 OS=Homo sapiens GN=SNX32 PE=2 SV=1
Length = 403
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 51/69 (73%)
Query: 99 QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
+EV AE QQ C +FE++SD AK+EL DFK RRV +F+KNL+ELAELE+KHA++ I
Sbjct: 332 REVRPAESHQQLCCQRFERLSDSAKQELMDFKSRRVSSFRKNLIELAELELKHAKASTLI 391
Query: 159 LKKCLAELK 167
L+ L LK
Sbjct: 392 LRNTLVALK 400
>sp|Q9D8U8|SNX5_MOUSE Sorting nexin-5 OS=Mus musculus GN=Snx5 PE=1 SV=1
Length = 404
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 54/68 (79%)
Query: 96 VEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQ 155
++ ++V AE QQE C KFEQ+S+ AKEEL +FK +RV AF+KNL+E++ELEIKHA +
Sbjct: 331 LKSKDVKLAETHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNN 390
Query: 156 VNILKKCL 163
V++L+ C+
Sbjct: 391 VSLLQSCI 398
>sp|B1H267|SNX5_RAT Sorting nexin-5 OS=Rattus norvegicus GN=Snx5 PE=1 SV=1
Length = 404
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 54/68 (79%)
Query: 96 VEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQ 155
++ ++V AE QQE C KFEQ+S+ AKEEL +FK +RV AF+KNL+E++ELEIKHA +
Sbjct: 331 LKSKDVKLAETHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNN 390
Query: 156 VNILKKCL 163
V++L+ C+
Sbjct: 391 VSLLQSCI 398
>sp|Q9Y5X3|SNX5_HUMAN Sorting nexin-5 OS=Homo sapiens GN=SNX5 PE=1 SV=1
Length = 404
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 56/74 (75%)
Query: 96 VEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQ 155
++ ++V AE QQE C KFEQ+S+ AKEEL +FK +RV AF+KNL+E++ELEIKHA +
Sbjct: 331 LKSKDVKLAEAHQQECCQKFEQLSESAKEELINFKRKRVAAFRKNLIEMSELEIKHARNN 390
Query: 156 VNILKKCLAELKTS 169
V++L+ C+ K +
Sbjct: 391 VSLLQSCIDLFKNN 404
>sp|Q80ZJ7|SNX32_MOUSE Sorting nexin-32 OS=Mus musculus GN=Snx32 PE=2 SV=1
Length = 404
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 51/69 (73%)
Query: 99 QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
+EV AE QQ C +FE++SD AK+EL DFK RRV +F+KNL+ELAELE+KHA++ +
Sbjct: 333 REVRPAESRQQLCCQRFERLSDSAKQELMDFKSRRVSSFRKNLIELAELELKHAKASTLL 392
Query: 159 LKKCLAELK 167
L+ L LK
Sbjct: 393 LQNTLVALK 401
>sp|Q3ZBM5|SNX5_BOVIN Sorting nexin-5 OS=Bos taurus GN=SNX5 PE=2 SV=1
Length = 404
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 56/74 (75%)
Query: 96 VEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQ 155
++ ++V AE QQE C KFEQ+S+ AK+EL +FK +RV AF+KNL+E++ELEIKHA +
Sbjct: 331 LKSRDVKLAEAHQQECCQKFEQLSESAKDELINFKRKRVAAFRKNLIEMSELEIKHARNN 390
Query: 156 VNILKKCLAELKTS 169
V++L+ C+ K +
Sbjct: 391 VSLLQSCIDLFKNN 404
>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Length = 203
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLL 118
Query: 60 CGNKSDLEG 68
GNKSDL G
Sbjct: 119 VGNKSDLTG 127
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1
Length = 205
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 62 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 121
Query: 60 CGNKSDLEGTTPQVTE 75
GNKSDL TT +V +
Sbjct: 122 VGNKSDL--TTKKVVD 135
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1
PE=3 SV=1
Length = 203
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLL 118
Query: 60 CGNKSDLEGTTPQVTE 75
GNKSDL T+ +V E
Sbjct: 119 VGNKSDL--TSKKVVE 132
>sp|Q01890|YPT1_PHYIN Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1
PE=3 SV=1
Length = 201
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLL 118
Query: 60 CGNKSDLEGTTPQVTEAD 77
GNKSDL T +V D
Sbjct: 119 VGNKSDL--TAKRVVSTD 134
>sp|Q6IQ22|RAB12_HUMAN Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=1 SV=3
Length = 244
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER SITS+YY+ A+ ILV+ + +F L + + I YA E+A++ L
Sbjct: 93 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 152
Query: 60 CGNKSDLEGTTPQVTEADMENFWSRRSSRRF 90
GNK D E T ++T E F + + RF
Sbjct: 153 VGNKLDCE-TDREITRQQGEKFAQQITGMRF 182
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 62 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLL 121
Query: 60 CGNKSDLEGTTPQVTE 75
GNK DL TT +V +
Sbjct: 122 VGNKCDL--TTKKVVD 135
>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
Length = 203
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA +N L
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLL 118
Query: 60 CGNKSDLEGTTPQVTE 75
GNKSDL TE
Sbjct: 119 VGNKSDLTANKVVATE 134
>sp|P28188|RAD2A_ARATH Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1
SV=3
Length = 203
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA +N L
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLL 118
Query: 60 CGNKSDL 66
GNKSDL
Sbjct: 119 VGNKSDL 125
>sp|P23640|RB27A_RAT Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1
SV=1
Length = 221
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL--LEIVTYAENAKIF 58
+QLWDT G ER S+T+++++ A +L+F L N SF + + L++ Y EN I
Sbjct: 70 LQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV 129
Query: 59 LCGNKSDLE 67
LCGNKSDLE
Sbjct: 130 LCGNKSDLE 138
>sp|P62824|RAB3C_RAT Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1
Length = 227
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 81 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVIL 140
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 141 AGNKCDME 148
>sp|P62823|RAB3C_MOUSE Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1
Length = 227
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 81 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVIL 140
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 141 AGNKCDME 148
>sp|Q96E17|RAB3C_HUMAN Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1
Length = 227
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 81 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVIL 140
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 141 VGNKCDME 148
>sp|Q4LE85|RB27A_PIG Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27A PE=2 SV=1
Length = 221
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHL--LEIVTYAENAKIF 58
+QLWDT G ER S+T+++++ A +L+F L N SF + + L++ Y EN I
Sbjct: 70 LQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV 129
Query: 59 LCGNKSDLE 67
LCGNKSDLE
Sbjct: 130 LCGNKSDLE 138
>sp|Q94986|RAB3_CAEEL Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2
SV=1
Length = 219
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ ENA++ L
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVL 132
Query: 60 CGNKSDLE 67
GNK D++
Sbjct: 133 VGNKCDMD 140
>sp|Q9ERI2|RB27A_MOUSE Ras-related protein Rab-27A OS=Mus musculus GN=Rab27a PE=1 SV=1
Length = 221
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF----HVLSQHLLEIVTYAENAK 56
+QLWDT G ER S+T+++++ A +L+F L N SF + +SQ L++ Y EN
Sbjct: 70 LQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQ--LQMHAYCENPD 127
Query: 57 IFLCGNKSDLE 67
I LCGNKSDLE
Sbjct: 128 IVLCGNKSDLE 138
>sp|P25228|RAB3_DROME Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1
SV=1
Length = 220
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + + +I TY+ +NA++ L
Sbjct: 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVIL 131
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 132 VGNKCDME 139
>sp|P10949|RAB3C_BOVIN Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3
Length = 227
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 81 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVIL 140
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 141 VGNKCDME 148
>sp|Q1HE58|RB27A_CANFA Ras-related protein Rab-27A OS=Canis familiaris GN=RAB27A PE=2 SV=1
Length = 221
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF----HVLSQHLLEIVTYAENAK 56
+QLWDT G ER S+T+++++ A +L+F L N SF + +SQ L++ Y EN
Sbjct: 70 LQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQ--LQMHAYCENPD 127
Query: 57 IFLCGNKSDLE 67
I LCGNKSDLE
Sbjct: 128 IVLCGNKSDLE 138
>sp|Q68EK7|RAB4B_DANRE Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1
Length = 213
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFL 59
+Q+WDT G ER S+T SYY+ A A+LV+ + + +++ L+ L + T A N I L
Sbjct: 59 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIIL 118
Query: 60 CGNKSDLE 67
CGNK DL+
Sbjct: 119 CGNKKDLD 126
>sp|P51159|RB27A_HUMAN Ras-related protein Rab-27A OS=Homo sapiens GN=RAB27A PE=1 SV=3
Length = 221
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF----HVLSQHLLEIVTYAENAK 56
+QLWDT G ER S+T+++++ A +L+F L N SF + +SQ L++ Y EN
Sbjct: 70 LQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQ--LQMHAYCENPD 127
Query: 57 IFLCGNKSDLE 67
I LCGNKSDLE
Sbjct: 128 IVLCGNKSDLE 138
>sp|Q54NU2|RAB1D_DICDI Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D
PE=1 SV=1
Length = 204
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A+ ILV+ + SF + Q + EI YA EN L
Sbjct: 61 LQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLL 120
Query: 60 CGNKSDL 66
GNK+DL
Sbjct: 121 VGNKTDL 127
>sp|P11023|RAB3A_BOVIN Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3
Length = 220
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 132
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 133 VGNKCDME 140
>sp|P63012|RAB3A_RAT Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1
Length = 220
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 132
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 133 VGNKCDME 140
>sp|Q06AU3|RAB3A_PIG Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1
Length = 220
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 132
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 133 VGNKCDME 140
>sp|P63011|RAB3A_MOUSE Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1
Length = 220
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 132
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 133 VGNKCDME 140
>sp|Q9CZT8|RAB3B_MOUSE Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1
Length = 219
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVIL 132
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 133 VGNKCDME 140
>sp|P20337|RAB3B_HUMAN Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2
Length = 219
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVIL 132
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 133 VGNKCDME 140
>sp|Q4R4R9|RAB3A_MACFA Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2
SV=1
Length = 220
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 132
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 133 VGNKCDME 140
>sp|P20336|RAB3A_HUMAN Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1
Length = 220
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 132
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 133 VGNKCDME 140
>sp|P51152|RAB12_CANFA Ras-related protein Rab-12 (Fragment) OS=Canis familiaris GN=RAB12
PE=2 SV=1
Length = 208
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER SITS+YY+ A+ ILV+ + +F L + + I YA E+A++ L
Sbjct: 57 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 116
Query: 60 CGNKSDLEGTTPQVTEADMENFWSRRSSRRF 90
GNK D E T ++T E F + RF
Sbjct: 117 VGNKLDCE-TDREITRQQGEKFAHEITGMRF 146
>sp|Q5KTJ7|RAB3B_MESAU Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2
SV=1
Length = 219
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVIL 132
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 133 VGNKCDME 140
>sp|Q63941|RAB3B_RAT Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2
Length = 219
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVIL 132
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 133 VGNKCDME 140
>sp|P10948|RAB3B_BOVIN Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1
Length = 219
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVIL 132
Query: 60 CGNKSDLE 67
GNK D+E
Sbjct: 133 VGNKCDME 140
>sp|Q2HJH2|RAB1B_BOVIN Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1
Length = 201
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + S+ + Q L EI YA EN L
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLL 118
Query: 60 CGNKSDLEGTTPQVTE 75
GNKSDL TT +V +
Sbjct: 119 VGNKSDL--TTKKVVD 132
>sp|P22125|RAB1_DIPOM Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1
Length = 202
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 118
Query: 60 CGNKSDLEGTTPQVTE 75
GNK DL TT +V +
Sbjct: 119 VGNKCDL--TTKKVVD 132
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3
Length = 205
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 62 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 121
Query: 60 CGNKSDLEGTTPQVTE 75
GNK DL TT +V +
Sbjct: 122 VGNKCDL--TTKKVVD 135
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 62 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 121
Query: 60 CGNKSDLEGTTPQVTE 75
GNK DL TT +V +
Sbjct: 122 VGNKCDL--TTKKVVD 135
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 62 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 121
Query: 60 CGNKSDLEGTTPQVTE 75
GNK DL TT +V +
Sbjct: 122 VGNKCDL--TTKKVVD 135
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 62 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 121
Query: 60 CGNKSDLEGTTPQVTE 75
GNK DL TT +V +
Sbjct: 122 VGNKCDL--TTKKVVD 135
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1
Length = 201
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + S+ + Q L EI YA EN L
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLL 118
Query: 60 CGNKSDLEGTTPQVTE 75
GNKSDL TT +V +
Sbjct: 119 VGNKSDL--TTKKVVD 132
>sp|Q4R8X3|RAB1B_MACFA Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2
SV=1
Length = 201
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + S+ + Q L EI YA EN L
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLL 118
Query: 60 CGNKSDLEGTTPQVTE 75
GNKSDL TT +V +
Sbjct: 119 VGNKSDL--TTKKVVD 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,580,142
Number of Sequences: 539616
Number of extensions: 2082161
Number of successful extensions: 13612
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 475
Number of HSP's that attempted gapping in prelim test: 12604
Number of HSP's gapped (non-prelim): 1279
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 57 (26.6 bits)