Query psy17235
Match_columns 170
No_of_seqs 216 out of 1594
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 16:47:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 8.8E-34 1.9E-38 208.4 11.2 103 1-104 60-163 (205)
2 KOG0078|consensus 100.0 3.1E-32 6.8E-37 202.5 11.2 111 1-115 63-174 (207)
3 KOG0098|consensus 100.0 4.9E-31 1.1E-35 192.4 10.0 102 1-104 57-159 (216)
4 KOG0092|consensus 100.0 2E-30 4.3E-35 190.1 10.8 102 1-104 56-158 (200)
5 KOG0093|consensus 100.0 2.3E-30 4.9E-35 182.5 9.3 102 1-104 72-174 (193)
6 KOG0087|consensus 100.0 7.7E-30 1.7E-34 189.4 11.0 119 2-124 66-185 (222)
7 KOG0091|consensus 100.0 1.6E-29 3.6E-34 181.0 10.7 113 1-115 60-176 (213)
8 KOG0094|consensus 100.0 2.6E-29 5.6E-34 184.6 10.1 102 1-104 73-176 (221)
9 KOG0081|consensus 100.0 4.7E-29 1E-33 178.0 9.6 120 1-122 69-191 (219)
10 KOG0080|consensus 100.0 3.3E-29 7.1E-34 179.0 8.0 102 1-104 62-165 (209)
11 KOG0083|consensus 100.0 2.9E-29 6.3E-34 174.6 6.7 102 1-104 49-151 (192)
12 KOG0079|consensus 100.0 7.9E-29 1.7E-33 174.9 8.8 104 1-106 59-162 (198)
13 KOG0086|consensus 100.0 1.3E-28 2.8E-33 174.8 9.5 112 1-116 60-172 (214)
14 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.4E-28 9.6E-33 180.9 12.6 105 1-105 55-172 (182)
15 KOG0394|consensus 100.0 3.4E-28 7.3E-33 177.2 10.5 105 1-105 60-170 (210)
16 cd04133 Rop_like Rop subfamily 100.0 1.4E-27 3E-32 177.4 12.8 104 1-105 51-165 (176)
17 cd04121 Rab40 Rab40 subfamily. 99.9 2.4E-27 5.3E-32 177.9 12.7 102 1-104 57-158 (189)
18 KOG0088|consensus 99.9 5.2E-28 1.1E-32 172.6 8.5 103 1-105 64-167 (218)
19 cd04131 Rnd Rnd subfamily. Th 99.9 2.4E-27 5.3E-32 176.2 12.5 105 1-105 51-168 (178)
20 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 3.6E-27 7.8E-32 182.0 13.1 105 1-105 63-180 (232)
21 cd04120 Rab12 Rab12 subfamily. 99.9 5.7E-27 1.2E-31 177.6 13.2 103 1-104 51-154 (202)
22 cd01875 RhoG RhoG subfamily. 99.9 6.2E-27 1.3E-31 175.7 12.0 104 1-104 53-168 (191)
23 cd01873 RhoBTB RhoBTB subfamil 99.9 1.1E-25 2.4E-30 169.7 11.9 102 1-105 68-188 (195)
24 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.5E-25 3.3E-30 166.0 12.2 105 1-105 51-167 (175)
25 PTZ00099 rab6; Provisional 99.9 3.3E-25 7.2E-30 164.6 12.9 102 1-104 31-133 (176)
26 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 3.1E-25 6.7E-30 170.3 12.9 108 1-108 51-171 (222)
27 KOG0095|consensus 99.9 7E-26 1.5E-30 160.4 7.7 113 1-117 58-171 (213)
28 KOG0097|consensus 99.9 1.8E-25 3.9E-30 157.2 9.3 102 1-104 62-164 (215)
29 KOG0393|consensus 99.9 2.1E-25 4.5E-30 166.3 10.1 105 1-105 55-171 (198)
30 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 5.8E-25 1.2E-29 162.4 12.3 102 1-104 52-155 (172)
31 cd04122 Rab14 Rab14 subfamily. 99.9 9.7E-25 2.1E-29 159.6 12.9 102 1-104 53-155 (166)
32 cd01871 Rac1_like Rac1-like su 99.9 7.2E-25 1.6E-29 162.2 11.8 105 1-105 51-167 (174)
33 cd04126 Rab20 Rab20 subfamily. 99.9 2E-24 4.3E-29 165.6 14.3 104 1-104 46-181 (220)
34 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 2.5E-24 5.5E-29 162.5 13.6 103 1-104 52-159 (201)
35 cd04127 Rab27A Rab27a subfamil 99.9 2.1E-24 4.5E-29 159.5 12.3 102 1-104 65-168 (180)
36 smart00176 RAN Ran (Ras-relate 99.9 2.3E-24 4.9E-29 163.1 12.5 100 1-104 46-145 (200)
37 cd04134 Rho3 Rho3 subfamily. 99.9 3.4E-24 7.3E-29 160.4 12.3 103 1-104 50-165 (189)
38 PF00071 Ras: Ras family; Int 99.9 4.5E-24 9.8E-29 155.0 12.0 102 1-104 50-152 (162)
39 smart00174 RHO Rho (Ras homolo 99.9 4.7E-24 1E-28 156.7 11.4 104 1-104 48-163 (174)
40 cd04117 Rab15 Rab15 subfamily. 99.9 7.1E-24 1.5E-28 154.7 12.0 102 1-104 51-153 (161)
41 KOG0395|consensus 99.9 9.3E-24 2E-28 159.2 12.1 102 1-104 53-156 (196)
42 cd04136 Rap_like Rap-like subf 99.9 1.7E-23 3.7E-28 151.8 11.9 102 1-104 51-154 (163)
43 cd04144 Ras2 Ras2 subfamily. 99.9 2.2E-23 4.7E-28 156.1 12.3 102 1-104 49-154 (190)
44 PTZ00369 Ras-like protein; Pro 99.9 3.8E-23 8.1E-28 154.7 13.3 102 1-104 55-158 (189)
45 cd01865 Rab3 Rab3 subfamily. 99.9 2.8E-23 6E-28 151.9 12.2 102 1-104 52-154 (165)
46 cd04132 Rho4_like Rho4-like su 99.9 4.1E-23 9E-28 153.7 12.9 104 1-104 51-158 (187)
47 PLN03071 GTP-binding nuclear p 99.9 2.9E-23 6.2E-28 159.1 12.1 101 1-105 64-164 (219)
48 cd04175 Rap1 Rap1 subgroup. T 99.9 3.4E-23 7.3E-28 150.9 11.8 102 1-104 51-154 (164)
49 cd04130 Wrch_1 Wrch-1 subfamil 99.9 3.3E-23 7.2E-28 152.6 11.7 104 1-104 50-165 (173)
50 cd04103 Centaurin_gamma Centau 99.9 3.1E-23 6.8E-28 151.3 11.5 100 1-105 49-151 (158)
51 cd04176 Rap2 Rap2 subgroup. T 99.9 4.4E-23 9.5E-28 150.0 11.9 102 1-104 51-154 (163)
52 cd04109 Rab28 Rab28 subfamily. 99.9 6.6E-23 1.4E-27 156.5 12.8 102 1-104 52-157 (215)
53 cd01864 Rab19 Rab19 subfamily. 99.9 5E-23 1.1E-27 150.3 11.6 103 1-104 54-157 (165)
54 cd04106 Rab23_lke Rab23-like s 99.9 5.3E-23 1.2E-27 149.2 11.3 102 1-104 53-154 (162)
55 cd01867 Rab8_Rab10_Rab13_like 99.9 1.1E-22 2.3E-27 149.0 12.6 102 1-104 54-156 (167)
56 cd04111 Rab39 Rab39 subfamily. 99.9 1E-22 2.3E-27 155.1 13.0 103 1-105 54-158 (211)
57 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.5E-22 3.2E-27 147.8 12.4 102 1-104 53-155 (166)
58 cd04116 Rab9 Rab9 subfamily. 99.9 1.4E-22 3E-27 148.4 12.1 102 1-104 56-162 (170)
59 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.8E-22 3.8E-27 150.5 12.0 102 1-104 51-157 (182)
60 cd04140 ARHI_like ARHI subfami 99.9 1.5E-22 3.3E-27 147.9 11.2 102 1-104 51-156 (165)
61 cd04110 Rab35 Rab35 subfamily. 99.9 3.2E-22 6.9E-27 150.9 13.1 102 1-104 57-158 (199)
62 cd04125 RabA_like RabA-like su 99.9 3.7E-22 7.9E-27 149.0 13.1 102 1-104 51-153 (188)
63 cd04112 Rab26 Rab26 subfamily. 99.9 3.3E-22 7.2E-27 149.8 12.6 102 1-104 52-154 (191)
64 PLN03110 Rab GTPase; Provision 99.9 4.1E-22 8.9E-27 152.3 12.8 102 1-104 63-165 (216)
65 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 4.2E-22 9E-27 146.8 12.3 102 1-104 51-156 (170)
66 cd04145 M_R_Ras_like M-Ras/R-R 99.9 4.2E-22 9.1E-27 144.6 11.8 102 1-104 52-155 (164)
67 PLN03108 Rab family protein; P 99.9 6.9E-22 1.5E-26 150.4 13.4 102 1-104 57-159 (210)
68 cd01866 Rab2 Rab2 subfamily. 99.9 6.3E-22 1.4E-26 145.1 12.8 102 1-104 55-157 (168)
69 cd01868 Rab11_like Rab11-like. 99.9 4.8E-22 1E-26 144.8 11.8 102 1-104 54-156 (165)
70 cd04115 Rab33B_Rab33A Rab33B/R 99.9 5.8E-22 1.3E-26 145.6 11.8 102 1-104 53-160 (170)
71 cd04135 Tc10 TC10 subfamily. 99.9 6.2E-22 1.3E-26 145.4 11.8 104 1-104 50-165 (174)
72 cd04113 Rab4 Rab4 subfamily. 99.9 5.7E-22 1.2E-26 143.9 11.5 102 1-104 51-153 (161)
73 cd00877 Ran Ran (Ras-related n 99.9 8.3E-22 1.8E-26 144.6 12.3 100 1-104 51-150 (166)
74 smart00173 RAS Ras subfamily o 99.9 1.1E-21 2.3E-26 142.7 12.4 102 1-104 50-153 (164)
75 cd04119 RJL RJL (RabJ-Like) su 99.9 8.7E-22 1.9E-26 143.0 11.7 102 1-104 51-158 (168)
76 cd04177 RSR1 RSR1 subgroup. R 99.9 1.5E-21 3.3E-26 143.0 12.7 103 1-104 51-155 (168)
77 cd04101 RabL4 RabL4 (Rab-like4 99.9 1.2E-21 2.6E-26 142.4 12.0 102 1-104 54-155 (164)
78 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.8E-21 3.8E-26 140.6 12.0 101 1-104 51-153 (162)
79 cd04149 Arf6 Arf6 subfamily. 99.9 1E-21 2.2E-26 144.5 10.2 102 1-105 55-162 (168)
80 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 5.9E-22 1.3E-26 145.2 8.2 102 1-104 46-157 (164)
81 PLN00223 ADP-ribosylation fact 99.9 2.2E-21 4.8E-26 144.5 11.2 98 1-104 63-169 (181)
82 cd04143 Rhes_like Rhes_like su 99.9 3.7E-21 8E-26 149.9 12.7 104 1-105 50-163 (247)
83 cd04146 RERG_RasL11_like RERG/ 99.9 3.5E-21 7.6E-26 140.5 11.8 102 1-104 49-155 (165)
84 cd04124 RabL2 RabL2 subfamily. 99.9 4.8E-21 1E-25 139.6 12.1 99 1-104 51-149 (161)
85 cd04102 RabL3 RabL3 (Rab-like3 99.9 3.6E-21 7.9E-26 145.8 11.3 102 1-104 56-181 (202)
86 cd04118 Rab24 Rab24 subfamily. 99.9 7.4E-21 1.6E-25 142.3 12.8 103 1-104 52-157 (193)
87 cd01870 RhoA_like RhoA-like su 99.9 6.4E-21 1.4E-25 140.1 12.3 105 1-105 51-167 (175)
88 cd04148 RGK RGK subfamily. Th 99.9 3.1E-21 6.7E-26 148.0 10.7 101 1-105 52-155 (221)
89 cd04129 Rho2 Rho2 subfamily. 99.9 8E-21 1.7E-25 141.9 12.6 104 1-104 51-164 (187)
90 smart00175 RAB Rab subfamily o 99.9 8E-21 1.7E-25 137.7 12.1 102 1-104 51-153 (164)
91 cd04158 ARD1 ARD1 subfamily. 99.9 7.7E-21 1.7E-25 139.6 11.8 101 1-104 45-152 (169)
92 cd04150 Arf1_5_like Arf1-Arf5- 99.9 6.2E-21 1.3E-25 139.0 11.1 101 1-104 46-152 (159)
93 smart00177 ARF ARF-like small 99.9 8.3E-21 1.8E-25 140.4 11.4 101 1-104 59-165 (175)
94 cd04142 RRP22 RRP22 subfamily. 99.9 1.3E-20 2.9E-25 142.3 12.5 102 1-104 51-165 (198)
95 PLN03118 Rab family protein; P 99.8 2.1E-20 4.6E-25 142.1 12.9 102 1-104 64-168 (211)
96 cd01860 Rab5_related Rab5-rela 99.8 2.2E-20 4.7E-25 135.6 12.3 102 1-104 52-154 (163)
97 cd04123 Rab21 Rab21 subfamily. 99.8 3.2E-20 7E-25 134.0 12.1 102 1-104 51-153 (162)
98 cd01892 Miro2 Miro2 subfamily. 99.8 1.3E-20 2.8E-25 138.7 10.0 102 1-104 56-157 (169)
99 cd01861 Rab6 Rab6 subfamily. 99.8 3.9E-20 8.3E-25 134.0 12.3 102 1-104 51-153 (161)
100 cd01862 Rab7 Rab7 subfamily. 99.8 4.9E-20 1.1E-24 134.7 12.4 103 1-104 51-158 (172)
101 PTZ00133 ADP-ribosylation fact 99.8 3.9E-20 8.5E-25 137.8 11.1 101 1-104 63-169 (182)
102 cd01863 Rab18 Rab18 subfamily. 99.8 7.8E-20 1.7E-24 132.5 12.3 101 1-104 51-153 (161)
103 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.1E-20 2.4E-25 138.7 7.1 103 1-104 45-160 (167)
104 cd01893 Miro1 Miro1 subfamily. 99.8 9E-20 2E-24 133.4 11.5 105 1-106 49-157 (166)
105 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 1.6E-19 3.4E-24 134.5 12.5 101 1-104 54-161 (183)
106 cd04154 Arl2 Arl2 subfamily. 99.8 1.3E-19 2.7E-24 133.5 10.9 101 1-104 60-166 (173)
107 cd04114 Rab30 Rab30 subfamily. 99.8 2.9E-19 6.2E-24 130.5 12.4 102 1-104 58-160 (169)
108 cd00157 Rho Rho (Ras homology) 99.8 2.3E-19 5.1E-24 131.0 10.9 104 1-104 50-164 (171)
109 cd04147 Ras_dva Ras-dva subfam 99.8 5.4E-19 1.2E-23 133.1 12.4 103 1-104 49-154 (198)
110 cd04139 RalA_RalB RalA/RalB su 99.8 8.1E-19 1.7E-23 127.0 12.7 102 1-104 50-153 (164)
111 PLN00023 GTP-binding protein; 99.8 2E-19 4.3E-24 143.8 9.7 87 1-88 85-190 (334)
112 cd04157 Arl6 Arl6 subfamily. 99.8 1.9E-19 4.2E-24 130.3 8.4 101 1-104 47-155 (162)
113 cd04156 ARLTS1 ARLTS1 subfamil 99.8 6.8E-19 1.5E-23 127.4 10.3 100 1-104 46-153 (160)
114 KOG4252|consensus 99.8 1.5E-19 3.2E-24 131.8 5.9 102 2-105 72-173 (246)
115 cd04137 RheB Rheb (Ras Homolog 99.8 1.9E-18 4.2E-23 127.7 12.1 102 1-104 51-154 (180)
116 cd00876 Ras Ras family. The R 99.8 2.3E-18 5E-23 124.0 10.9 102 1-104 49-152 (160)
117 cd00154 Rab Rab family. Rab G 99.8 3E-18 6.5E-23 122.6 11.3 102 1-104 51-153 (159)
118 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2.1E-18 4.6E-23 127.3 10.8 100 1-104 61-167 (174)
119 cd00879 Sar1 Sar1 subfamily. 99.8 2.7E-18 5.9E-23 128.0 10.3 102 1-105 65-183 (190)
120 cd04160 Arfrp1 Arfrp1 subfamil 99.8 4.2E-18 9E-23 124.1 10.6 101 1-104 52-160 (167)
121 cd04151 Arl1 Arl1 subfamily. 99.8 6.3E-18 1.4E-22 122.5 11.1 100 1-104 45-151 (158)
122 PTZ00132 GTP-binding nuclear p 99.8 1E-17 2.3E-22 127.6 12.7 100 1-104 60-159 (215)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.1E-17 2.4E-22 120.9 10.7 101 1-104 45-151 (158)
124 smart00178 SAR Sar1p-like memb 99.8 7.3E-18 1.6E-22 125.7 10.0 101 1-104 63-176 (184)
125 PF00025 Arf: ADP-ribosylation 99.7 6.5E-17 1.4E-21 119.8 13.1 105 1-108 60-172 (175)
126 cd01890 LepA LepA subfamily. 99.7 3.3E-17 7.1E-22 120.7 10.8 98 1-104 69-168 (179)
127 KOG4423|consensus 99.7 4.3E-18 9.4E-23 124.7 4.6 104 1-104 77-185 (229)
128 KOG0070|consensus 99.7 8.6E-17 1.9E-21 117.8 11.1 101 1-104 63-169 (181)
129 KOG0073|consensus 99.7 1.2E-15 2.6E-20 109.8 10.8 105 1-109 62-175 (185)
130 cd04159 Arl10_like Arl10-like 99.7 1.2E-15 2.6E-20 109.2 10.6 101 1-104 46-152 (159)
131 COG1100 GTPase SAR1 and relate 99.6 2.4E-15 5.2E-20 114.3 11.6 104 1-104 56-176 (219)
132 TIGR02528 EutP ethanolamine ut 99.6 4.5E-16 9.8E-21 110.7 6.9 94 2-104 38-136 (142)
133 cd04155 Arl3 Arl3 subfamily. 99.6 2.5E-15 5.3E-20 110.1 10.5 98 1-104 60-166 (173)
134 cd01898 Obg Obg subfamily. Th 99.6 3.5E-15 7.6E-20 108.8 10.6 102 1-104 50-162 (170)
135 KOG0075|consensus 99.6 2.9E-15 6.4E-20 106.1 9.3 100 1-104 67-173 (186)
136 cd01897 NOG NOG1 is a nucleola 99.6 3.1E-15 6.7E-20 109.0 9.0 100 1-104 49-159 (168)
137 cd04171 SelB SelB subfamily. 99.6 4.6E-15 9.9E-20 107.2 8.4 98 1-104 53-157 (164)
138 KOG3883|consensus 99.6 9.3E-15 2E-19 104.2 9.4 102 1-104 62-166 (198)
139 cd01891 TypA_BipA TypA (tyrosi 99.6 7.3E-15 1.6E-19 110.2 8.6 99 1-104 67-173 (194)
140 KOG0076|consensus 99.6 3.1E-15 6.8E-20 108.6 5.9 101 1-104 71-178 (197)
141 KOG1673|consensus 99.6 2.2E-14 4.7E-19 102.6 9.0 104 1-106 71-179 (205)
142 PRK12299 obgE GTPase CgtA; Rev 99.6 4.2E-14 9.2E-19 114.6 11.0 102 1-104 208-319 (335)
143 PF08477 Miro: Miro-like prote 99.5 1E-14 2.2E-19 100.7 6.2 65 1-65 52-119 (119)
144 KOG0071|consensus 99.5 6.5E-14 1.4E-18 98.6 9.4 101 1-104 63-169 (180)
145 KOG0096|consensus 99.5 7.8E-15 1.7E-19 107.9 4.4 100 1-104 61-160 (216)
146 cd01879 FeoB Ferrous iron tran 99.5 1.7E-13 3.6E-18 98.5 10.7 96 1-104 45-148 (158)
147 TIGR00231 small_GTP small GTP- 99.5 1.3E-13 2.8E-18 97.9 9.8 102 1-105 52-156 (161)
148 cd00882 Ras_like_GTPase Ras-li 99.5 2.4E-13 5.2E-18 95.3 11.0 103 1-104 47-151 (157)
149 TIGR01393 lepA GTP-binding pro 99.5 7.8E-14 1.7E-18 120.7 10.1 98 1-104 72-171 (595)
150 cd01878 HflX HflX subfamily. 99.5 9.2E-14 2E-18 104.8 8.3 96 1-104 91-196 (204)
151 TIGR00157 ribosome small subun 99.5 1.4E-13 3E-18 107.2 9.3 91 10-105 24-115 (245)
152 PRK04213 GTP-binding protein; 99.5 2.4E-14 5.3E-19 107.7 3.9 94 1-104 54-183 (201)
153 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 2.3E-13 5E-18 98.9 8.7 97 1-104 52-157 (168)
154 PRK15467 ethanolamine utilizat 99.5 2.6E-13 5.7E-18 98.9 8.4 92 3-104 41-138 (158)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.4 6.2E-12 1.3E-16 105.5 15.9 91 1-104 253-351 (442)
156 cd01881 Obg_like The Obg-like 99.4 6E-13 1.3E-17 97.2 8.5 102 1-104 46-168 (176)
157 TIGR02729 Obg_CgtA Obg family 99.4 1E-12 2.3E-17 106.4 9.9 101 1-104 207-320 (329)
158 KOG0074|consensus 99.4 3.5E-13 7.5E-18 95.1 6.0 101 1-104 64-170 (185)
159 TIGR00487 IF-2 translation ini 99.4 1.1E-12 2.5E-17 113.2 10.5 94 1-104 137-241 (587)
160 PRK03003 GTP-binding protein D 99.4 1.3E-12 2.7E-17 110.6 10.5 102 1-105 261-374 (472)
161 COG2229 Predicted GTPase [Gene 99.4 2.3E-12 4.9E-17 94.6 10.3 99 1-104 70-169 (187)
162 TIGR03156 GTP_HflX GTP-binding 99.4 1E-12 2.2E-17 107.3 8.8 95 1-104 239-343 (351)
163 PRK05291 trmE tRNA modificatio 99.4 6E-12 1.3E-16 105.9 13.6 89 1-104 265-361 (449)
164 KOG1660|consensus 99.4 1.5E-12 3.2E-17 103.2 9.1 73 97-169 327-399 (399)
165 PRK05433 GTP-binding protein L 99.4 2.6E-12 5.6E-17 111.4 10.5 98 1-104 76-175 (600)
166 TIGR00491 aIF-2 translation in 99.4 2.9E-12 6.2E-17 110.6 10.4 62 1-68 71-135 (590)
167 cd01894 EngA1 EngA1 subfamily. 99.4 2.4E-12 5.3E-17 92.1 8.4 95 1-104 47-149 (157)
168 cd00881 GTP_translation_factor 99.4 3.4E-12 7.5E-17 94.1 9.1 100 1-104 64-178 (189)
169 cd01888 eIF2_gamma eIF2-gamma 99.4 2.3E-12 5E-17 97.5 7.8 98 1-104 85-190 (203)
170 KOG0072|consensus 99.4 5E-12 1.1E-16 89.5 8.9 106 1-109 64-176 (182)
171 PRK03003 GTP-binding protein D 99.4 4E-12 8.7E-17 107.6 9.6 95 1-104 88-190 (472)
172 CHL00189 infB translation init 99.4 3.9E-12 8.3E-17 111.9 9.7 94 1-104 297-401 (742)
173 PRK12297 obgE GTPase CgtA; Rev 99.3 1.2E-11 2.6E-16 103.0 11.9 98 1-104 208-318 (424)
174 TIGR00483 EF-1_alpha translati 99.3 1.7E-12 3.7E-17 108.5 6.9 103 1-104 87-198 (426)
175 cd04105 SR_beta Signal recogni 99.3 3.5E-12 7.6E-17 96.6 7.9 68 1-68 50-123 (203)
176 PRK05306 infB translation init 99.3 7.5E-12 1.6E-16 110.9 10.3 94 1-104 339-443 (787)
177 TIGR00475 selB selenocysteine- 99.3 8.1E-12 1.7E-16 108.0 9.3 97 1-104 52-157 (581)
178 TIGR00436 era GTP-binding prot 99.3 1.3E-11 2.8E-16 97.3 9.8 98 1-104 50-155 (270)
179 TIGR03594 GTPase_EngA ribosome 99.3 2E-11 4.2E-16 102.0 11.2 100 1-105 222-336 (429)
180 KOG1707|consensus 99.3 2.1E-12 4.6E-17 108.7 5.0 137 2-141 59-201 (625)
181 PRK15494 era GTPase Era; Provi 99.3 1.9E-11 4E-16 99.5 10.3 96 1-104 102-207 (339)
182 PRK11058 GTPase HflX; Provisio 99.3 2.2E-11 4.8E-16 101.7 10.5 97 2-104 248-353 (426)
183 cd04164 trmE TrmE (MnmE, ThdF, 99.3 2.5E-11 5.4E-16 86.7 9.2 90 1-104 51-148 (157)
184 cd01895 EngA2 EngA2 subfamily. 99.3 4.9E-11 1.1E-15 86.4 9.9 101 1-105 52-167 (174)
185 TIGR00437 feoB ferrous iron tr 99.3 4.1E-11 8.8E-16 103.9 10.9 97 1-105 43-147 (591)
186 PRK12317 elongation factor 1-a 99.3 1.6E-11 3.5E-16 102.6 7.6 103 1-104 86-196 (425)
187 cd04166 CysN_ATPS CysN_ATPS su 99.3 2.5E-11 5.4E-16 92.2 8.0 101 1-104 79-185 (208)
188 cd01889 SelB_euk SelB subfamil 99.2 3E-11 6.5E-16 90.4 8.0 101 1-104 70-177 (192)
189 cd00880 Era_like Era (E. coli 99.2 6.9E-11 1.5E-15 83.7 9.3 100 1-104 47-155 (163)
190 PRK04004 translation initiatio 99.2 6.8E-11 1.5E-15 102.3 10.5 61 1-67 73-136 (586)
191 TIGR03598 GTPase_YsxC ribosome 99.2 3.6E-11 7.9E-16 89.0 6.8 99 1-102 66-179 (179)
192 PRK00093 GTP-binding protein D 99.2 9.2E-11 2E-15 98.2 9.4 93 1-104 51-153 (435)
193 cd04163 Era Era subfamily. Er 99.2 2.2E-10 4.8E-15 82.1 9.2 100 1-104 53-160 (168)
194 cd01883 EF1_alpha Eukaryotic e 99.2 5.1E-11 1.1E-15 91.2 6.1 100 1-104 79-196 (219)
195 cd01885 EF2 EF2 (for archaea a 99.2 1.2E-10 2.7E-15 89.4 8.1 74 1-77 75-148 (222)
196 PRK14845 translation initiatio 99.2 2.8E-10 6E-15 103.3 11.0 62 1-68 528-592 (1049)
197 PF00009 GTP_EFTU: Elongation 99.1 2.1E-10 4.5E-15 85.7 7.5 100 1-104 72-178 (188)
198 PRK10512 selenocysteinyl-tRNA- 99.1 3E-10 6.6E-15 98.8 9.4 97 1-104 53-157 (614)
199 PRK12298 obgE GTPase CgtA; Rev 99.1 6.7E-10 1.5E-14 91.9 10.4 102 1-104 209-324 (390)
200 PRK09518 bifunctional cytidyla 99.1 4.1E-10 8.9E-15 99.7 9.6 99 1-105 500-613 (712)
201 PRK00089 era GTPase Era; Revie 99.1 4.5E-10 9.8E-15 89.4 8.8 100 1-104 55-162 (292)
202 TIGR03594 GTPase_EngA ribosome 99.1 5.8E-10 1.2E-14 93.2 9.7 93 1-104 49-151 (429)
203 TIGR03680 eif2g_arch translati 99.1 4.7E-10 1E-14 93.4 8.3 98 1-104 82-187 (406)
204 PRK00454 engB GTP-binding prot 99.1 6.7E-10 1.5E-14 82.8 8.2 98 1-105 72-186 (196)
205 PRK12296 obgE GTPase CgtA; Rev 99.1 8.7E-10 1.9E-14 93.4 9.5 101 1-104 208-331 (500)
206 PRK00093 GTP-binding protein D 99.1 7.4E-10 1.6E-14 92.7 9.1 100 1-105 223-336 (435)
207 PRK04000 translation initiatio 99.1 8E-10 1.7E-14 92.1 9.1 98 1-104 87-192 (411)
208 PRK09518 bifunctional cytidyla 99.0 1.2E-09 2.6E-14 96.7 10.1 95 1-104 325-427 (712)
209 COG0532 InfB Translation initi 99.0 2.3E-09 5E-14 90.1 10.8 98 1-108 57-165 (509)
210 TIGR01394 TypA_BipA GTP-bindin 99.0 8.8E-10 1.9E-14 95.6 8.6 95 1-100 66-168 (594)
211 cd07621 BAR_SNX5_6 The Bin/Amp 99.0 2.3E-09 5E-14 81.7 9.8 70 98-167 150-219 (219)
212 cd07662 BAR_SNX6 The Bin/Amphi 99.0 3.7E-09 8E-14 80.1 10.0 70 98-167 149-218 (218)
213 cd04167 Snu114p Snu114p subfam 99.0 2.4E-09 5.2E-14 81.5 8.6 64 1-67 73-136 (213)
214 cd01896 DRG The developmentall 99.0 4.3E-09 9.4E-14 81.4 9.9 95 1-104 49-217 (233)
215 PLN00043 elongation factor 1-a 99.0 5.6E-10 1.2E-14 93.9 4.9 98 1-103 87-203 (447)
216 cd07663 BAR_SNX5 The Bin/Amphi 99.0 6.4E-09 1.4E-13 79.1 9.8 70 98-167 149-218 (218)
217 cd00066 G-alpha G protein alph 99.0 6.6E-09 1.4E-13 83.9 10.1 67 1-67 163-241 (317)
218 PRK10218 GTP-binding protein; 98.9 4.1E-09 9E-14 91.5 9.2 97 1-101 70-173 (607)
219 cd04168 TetM_like Tet(M)-like 98.9 4.6E-09 1E-13 81.5 8.4 65 1-68 66-130 (237)
220 PRK09554 feoB ferrous iron tra 98.9 1.2E-08 2.7E-13 90.8 10.6 97 1-105 52-160 (772)
221 cd04169 RF3 RF3 subfamily. Pe 98.9 8.9E-09 1.9E-13 81.2 8.6 65 1-68 73-137 (267)
222 cd01855 YqeH YqeH. YqeH is an 98.9 1.2E-08 2.7E-13 76.2 8.5 86 12-104 24-116 (190)
223 cd04165 GTPBP1_like GTPBP1-lik 98.9 2.1E-08 4.6E-13 77.2 9.7 100 1-104 86-214 (224)
224 TIGR00485 EF-Tu translation el 98.8 7.1E-09 1.5E-13 86.0 7.1 93 1-100 77-180 (394)
225 cd01876 YihA_EngB The YihA (En 98.8 1.3E-08 2.8E-13 73.1 7.6 99 1-104 47-162 (170)
226 TIGR03597 GTPase_YqeH ribosome 98.8 9.7E-09 2.1E-13 84.3 7.7 90 9-105 50-145 (360)
227 smart00275 G_alpha G protein a 98.8 5.9E-09 1.3E-13 85.0 6.3 67 1-67 186-264 (342)
228 cd01884 EF_Tu EF-Tu subfamily. 98.8 4.4E-08 9.5E-13 73.9 8.0 98 1-102 67-172 (195)
229 PRK12736 elongation factor Tu; 98.7 3.6E-08 7.7E-13 81.9 7.5 92 1-99 77-179 (394)
230 TIGR02034 CysN sulfate adenyly 98.7 3.5E-08 7.7E-13 82.2 7.2 101 1-104 82-188 (406)
231 cd01886 EF-G Elongation factor 98.7 3.9E-08 8.5E-13 77.7 6.8 93 1-96 66-158 (270)
232 KOG0077|consensus 98.7 3.7E-08 8E-13 71.5 5.7 76 1-79 66-143 (193)
233 smart00010 small_GTPase Small 98.7 8.4E-08 1.8E-12 66.0 7.1 78 13-102 37-115 (124)
234 PRK05124 cysN sulfate adenylyl 98.7 6.5E-08 1.4E-12 82.1 7.2 101 1-104 109-216 (474)
235 PF09439 SRPRB: Signal recogni 98.7 9E-08 2E-12 71.2 7.1 68 1-68 51-126 (181)
236 PRK13351 elongation factor G; 98.7 4.2E-08 9.2E-13 86.7 6.3 65 1-68 75-139 (687)
237 PRK12289 GTPase RsgA; Reviewed 98.7 1.5E-07 3.2E-12 77.0 9.0 84 15-104 82-166 (352)
238 PRK00741 prfC peptide chain re 98.7 8.9E-08 1.9E-12 82.2 7.9 65 1-68 81-145 (526)
239 KOG1145|consensus 98.6 2.9E-07 6.2E-12 78.0 10.5 94 1-104 203-307 (683)
240 cd01854 YjeQ_engC YjeQ/EngC. 98.6 1.1E-07 2.3E-12 75.8 7.7 80 19-104 75-155 (287)
241 COG0481 LepA Membrane GTPase L 98.6 2.3E-07 5E-12 77.4 9.7 98 1-104 78-177 (603)
242 PRK12735 elongation factor Tu; 98.6 8.7E-08 1.9E-12 79.6 7.3 98 1-102 77-182 (396)
243 PRK00098 GTPase RsgA; Reviewed 98.6 1.2E-07 2.5E-12 76.0 7.8 80 20-104 78-158 (298)
244 KOG0462|consensus 98.6 2.1E-07 4.5E-12 78.7 9.2 99 1-104 127-226 (650)
245 TIGR00484 EF-G translation elo 98.6 9.2E-08 2E-12 84.6 7.5 65 1-68 77-141 (689)
246 cd04170 EF-G_bact Elongation f 98.6 2.2E-07 4.8E-12 73.2 8.9 81 1-87 66-146 (268)
247 PRK13768 GTPase; Provisional 98.6 1.6E-07 3.6E-12 73.5 8.0 100 2-104 100-238 (253)
248 PRK12288 GTPase RsgA; Reviewed 98.6 3.3E-07 7.1E-12 74.9 9.2 80 21-104 119-199 (347)
249 PF02421 FeoB_N: Ferrous iron 98.6 5.3E-08 1.2E-12 70.8 3.9 96 1-104 49-152 (156)
250 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 2.3E-07 5E-12 71.7 7.1 103 1-104 50-167 (232)
251 PRK05506 bifunctional sulfate 98.5 2.1E-07 4.6E-12 81.6 7.2 102 1-104 106-212 (632)
252 cd01859 MJ1464 MJ1464. This f 98.5 4.1E-07 8.8E-12 65.8 7.3 86 12-104 2-87 (156)
253 TIGR00503 prfC peptide chain r 98.5 3E-07 6.6E-12 78.9 7.6 65 1-68 82-146 (527)
254 PRK09866 hypothetical protein; 98.5 1.8E-06 3.9E-11 75.0 11.4 101 2-104 233-344 (741)
255 PTZ00141 elongation factor 1- 98.5 3.9E-07 8.5E-12 76.8 6.6 101 1-103 87-203 (446)
256 PF10662 PduV-EutP: Ethanolami 98.4 9.1E-07 2E-11 63.3 7.2 95 2-104 39-137 (143)
257 PTZ00327 eukaryotic translatio 98.4 1.6E-06 3.5E-11 73.3 9.1 100 2-104 120-224 (460)
258 KOG1489|consensus 98.4 2.4E-06 5.2E-11 68.2 9.4 100 1-104 246-358 (366)
259 PLN03126 Elongation factor Tu; 98.4 9.2E-07 2E-11 75.1 7.5 97 1-101 146-250 (478)
260 CHL00071 tufA elongation facto 98.4 1.1E-06 2.4E-11 73.3 7.4 97 2-102 78-182 (409)
261 COG1159 Era GTPase [General fu 98.4 2.6E-06 5.7E-11 67.4 8.9 98 2-104 57-163 (298)
262 PRK12740 elongation factor G; 98.4 1.9E-06 4.1E-11 76.1 8.6 81 1-87 62-142 (668)
263 cd01899 Ygr210 Ygr210 subfamil 98.3 5.6E-06 1.2E-10 66.9 9.1 34 1-34 71-111 (318)
264 KOG1144|consensus 98.3 4.3E-06 9.3E-11 73.1 8.6 60 1-66 542-604 (1064)
265 PRK00049 elongation factor Tu; 98.3 3.9E-06 8.5E-11 69.8 7.9 95 2-100 78-180 (396)
266 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 3E-06 6.5E-11 60.4 6.3 76 18-100 7-84 (141)
267 TIGR00490 aEF-2 translation el 98.2 2.7E-06 5.9E-11 75.7 7.1 65 1-68 88-152 (720)
268 COG1160 Predicted GTPases [Gen 98.2 1E-05 2.2E-10 67.4 8.8 93 1-104 53-156 (444)
269 PRK12739 elongation factor G; 98.2 3.7E-06 8.1E-11 74.5 6.6 65 1-68 75-139 (691)
270 cd04104 p47_IIGP_like p47 (47- 98.2 2.7E-05 5.8E-10 58.6 10.3 61 1-67 54-120 (197)
271 COG0486 ThdF Predicted GTPase 98.2 2.2E-05 4.8E-10 65.6 10.6 93 1-104 267-367 (454)
272 PRK13796 GTPase YqeH; Provisio 98.1 1.6E-05 3.4E-10 65.5 8.4 77 21-104 67-150 (365)
273 KOG1532|consensus 98.0 0.00017 3.8E-09 56.9 12.2 66 2-68 119-195 (366)
274 cd01858 NGP_1 NGP-1. Autoanti 98.0 2.3E-05 4.9E-10 56.7 6.9 77 19-104 5-86 (157)
275 cd07630 BAR_SNX_like The Bin/A 98.0 6.2E-05 1.4E-09 56.9 9.4 63 102-164 135-197 (198)
276 cd01850 CDC_Septin CDC/Septin. 98.0 4.6E-06 1E-10 66.2 3.4 69 18-90 108-180 (276)
277 COG2895 CysN GTPases - Sulfate 98.0 4.1E-05 9E-10 62.1 8.0 101 1-104 88-194 (431)
278 PLN03127 Elongation factor Tu; 98.0 2.7E-05 5.8E-10 65.8 7.3 64 2-68 127-191 (447)
279 PF03029 ATP_bind_1: Conserved 97.9 1.7E-05 3.6E-10 61.7 5.3 101 2-105 94-229 (238)
280 PF00503 G-alpha: G-protein al 97.9 1.4E-05 3E-10 66.4 5.2 66 1-66 238-315 (389)
281 cd01849 YlqF_related_GTPase Yl 97.9 0.0001 2.2E-09 53.2 9.1 73 24-104 1-76 (155)
282 KOG3886|consensus 97.9 1.8E-05 3.9E-10 60.8 5.2 68 1-68 55-130 (295)
283 COG1160 Predicted GTPases [Gen 97.9 0.00012 2.5E-09 61.2 10.3 108 2-113 229-351 (444)
284 TIGR00101 ureG urease accessor 97.9 7.9E-05 1.7E-09 56.3 8.2 90 3-105 96-188 (199)
285 COG0536 Obg Predicted GTPase [ 97.9 0.00015 3.3E-09 58.6 9.8 98 2-104 210-324 (369)
286 COG5256 TEF1 Translation elong 97.8 6.3E-05 1.4E-09 62.1 6.8 102 1-104 87-202 (428)
287 cd01856 YlqF YlqF. Proteins o 97.8 5.2E-05 1.1E-09 55.7 5.8 84 12-104 9-92 (171)
288 KOG0082|consensus 97.8 3.8E-05 8.3E-10 62.6 5.3 68 1-68 197-276 (354)
289 PRK00007 elongation factor G; 97.8 6.1E-05 1.3E-09 66.9 7.0 92 1-98 77-171 (693)
290 COG1084 Predicted GTPase [Gene 97.8 0.00016 3.6E-09 58.1 8.6 100 1-104 217-327 (346)
291 KOG0090|consensus 97.7 0.00019 4.1E-09 54.5 7.9 68 1-68 84-159 (238)
292 COG2262 HflX GTPases [General 97.7 0.00035 7.5E-09 57.7 9.6 77 21-104 270-347 (411)
293 PLN00116 translation elongatio 97.7 7E-05 1.5E-09 67.9 5.3 63 2-67 101-163 (843)
294 PRK07560 elongation factor EF- 97.6 0.00012 2.5E-09 65.5 6.5 64 2-68 90-153 (731)
295 COG4917 EutP Ethanolamine util 97.6 0.00013 2.8E-09 51.0 5.2 93 3-104 41-137 (148)
296 KOG1707|consensus 97.6 0.00029 6.2E-09 60.4 8.0 75 21-97 494-568 (625)
297 COG0370 FeoB Fe2+ transport sy 97.6 0.00029 6.3E-09 61.4 7.8 96 1-104 52-155 (653)
298 KOG1423|consensus 97.5 0.00035 7.5E-09 55.9 7.0 65 2-68 123-199 (379)
299 TIGR03596 GTPase_YlqF ribosome 97.5 0.00054 1.2E-08 54.3 8.3 77 16-104 15-94 (276)
300 PF06858 NOG1: Nucleolar GTP-b 97.5 0.00045 9.7E-09 41.6 5.9 44 22-65 13-58 (58)
301 COG1217 TypA Predicted membran 97.5 0.00048 1E-08 57.9 7.8 93 1-101 70-173 (603)
302 KOG0468|consensus 97.5 0.00011 2.4E-09 63.9 4.2 63 1-66 199-261 (971)
303 PTZ00416 elongation factor 2; 97.5 0.00013 2.9E-09 66.0 5.0 64 1-67 94-157 (836)
304 PRK09435 membrane ATPase/prote 97.5 0.004 8.8E-08 50.7 12.7 92 2-105 152-252 (332)
305 KOG0705|consensus 97.5 0.00042 9.2E-09 59.2 7.1 89 16-104 89-180 (749)
306 PRK09602 translation-associate 97.5 0.00092 2E-08 55.7 9.0 33 1-33 74-113 (396)
307 COG0218 Predicted GTPase [Gene 97.4 0.0013 2.9E-08 49.5 8.5 96 2-104 73-188 (200)
308 PRK01889 GTPase RsgA; Reviewed 97.4 0.0013 2.7E-08 54.2 8.9 78 20-104 110-188 (356)
309 PF01926 MMR_HSR1: 50S ribosom 97.4 0.00073 1.6E-08 46.1 6.4 58 1-63 49-116 (116)
310 TIGR00750 lao LAO/AO transport 97.4 0.008 1.7E-07 48.2 13.2 92 2-104 130-229 (300)
311 COG0480 FusA Translation elong 97.3 0.00049 1.1E-08 61.0 6.0 65 1-68 78-142 (697)
312 TIGR00073 hypB hydrogenase acc 97.3 0.0022 4.8E-08 48.5 8.8 75 22-104 123-198 (207)
313 PRK09563 rbgA GTPase YlqF; Rev 97.3 0.0014 3E-08 52.3 7.6 79 17-104 19-97 (287)
314 COG1163 DRG Predicted GTPase [ 97.2 0.0036 7.9E-08 50.5 9.1 40 56-104 241-280 (365)
315 KOG1490|consensus 97.1 0.0036 7.8E-08 53.2 8.8 80 24-104 249-332 (620)
316 KOG0458|consensus 97.1 0.002 4.4E-08 55.3 7.2 102 1-104 257-373 (603)
317 PF00350 Dynamin_N: Dynamin fa 97.1 0.0011 2.3E-08 48.0 4.7 62 1-64 103-168 (168)
318 cd03110 Fer4_NifH_child This p 97.0 0.0088 1.9E-07 43.9 9.4 81 2-91 96-176 (179)
319 cd01882 BMS1 Bms1. Bms1 is an 96.9 0.011 2.5E-07 45.3 9.5 98 1-104 85-187 (225)
320 COG3276 SelB Selenocysteine-sp 96.9 0.0044 9.5E-08 51.8 7.5 97 1-104 52-153 (447)
321 KOG0099|consensus 96.7 0.0026 5.7E-08 50.0 4.6 67 1-67 204-282 (379)
322 COG1162 Predicted GTPases [Gen 96.7 0.016 3.4E-07 46.5 8.8 86 15-104 72-158 (301)
323 COG0050 TufB GTPases - transla 96.7 0.0026 5.7E-08 50.8 4.3 88 3-96 79-176 (394)
324 COG5258 GTPBP1 GTPase [General 96.7 0.012 2.6E-07 48.8 8.1 100 2-104 204-330 (527)
325 COG4108 PrfC Peptide chain rel 96.6 0.0056 1.2E-07 51.3 6.1 93 1-102 83-182 (528)
326 KOG3905|consensus 96.5 0.032 7E-07 45.4 9.6 102 2-104 103-281 (473)
327 smart00053 DYNc Dynamin, GTPas 96.4 0.012 2.6E-07 45.8 6.5 66 1-68 127-206 (240)
328 cd01852 AIG1 AIG1 (avrRpt2-ind 96.4 0.07 1.5E-06 39.8 10.5 85 1-88 51-155 (196)
329 COG5257 GCD11 Translation init 96.3 0.008 1.7E-07 48.6 5.0 96 1-104 88-193 (415)
330 KOG1954|consensus 96.0 0.15 3.3E-06 42.2 11.2 66 1-68 149-225 (532)
331 KOG3887|consensus 95.9 0.16 3.5E-06 39.8 10.1 67 1-68 77-149 (347)
332 PF05783 DLIC: Dynein light in 95.8 0.033 7.2E-07 47.5 6.9 103 1-104 75-255 (472)
333 TIGR00991 3a0901s02IAP34 GTP-b 95.5 0.061 1.3E-06 43.5 7.1 67 1-67 88-166 (313)
334 COG3596 Predicted GTPase [Gene 95.5 0.021 4.5E-07 45.2 4.2 67 1-68 89-162 (296)
335 KOG1191|consensus 95.4 0.038 8.2E-07 47.0 5.5 103 1-104 318-441 (531)
336 KOG0460|consensus 95.3 0.044 9.4E-07 44.8 5.4 80 4-88 122-206 (449)
337 COG1161 Predicted GTPases [Gen 95.2 0.05 1.1E-06 44.2 5.8 89 7-103 18-107 (322)
338 TIGR02836 spore_IV_A stage IV 95.2 0.31 6.8E-06 41.2 10.2 65 19-88 140-211 (492)
339 KOG1143|consensus 95.1 0.11 2.5E-06 43.1 7.5 101 1-104 251-379 (591)
340 cd04178 Nucleostemin_like Nucl 95.1 0.049 1.1E-06 40.2 4.8 44 24-68 1-44 (172)
341 KOG0467|consensus 94.7 0.046 1E-06 48.7 4.5 58 1-65 74-135 (887)
342 KOG0465|consensus 94.6 0.058 1.3E-06 47.1 4.8 65 1-68 106-170 (721)
343 TIGR03348 VI_IcmF type VI secr 94.3 0.37 8E-06 45.7 9.8 66 3-68 165-257 (1169)
344 cd02038 FleN-like FleN is a me 94.1 0.19 4.2E-06 35.4 5.9 63 2-67 48-110 (139)
345 PF05049 IIGP: Interferon-indu 93.8 1.8 3.8E-05 36.1 11.7 96 1-102 88-205 (376)
346 COG1149 MinD superfamily P-loo 93.6 1 2.3E-05 35.7 9.5 79 2-92 167-245 (284)
347 KOG0461|consensus 93.5 0.37 8E-06 39.7 7.1 89 1-98 72-174 (522)
348 cd07623 BAR_SNX1_2 The Bin/Amp 93.3 1.1 2.5E-05 34.4 9.3 60 101-160 158-217 (224)
349 PF11111 CENP-M: Centromere pr 93.1 0.65 1.4E-05 34.4 7.2 69 22-91 64-132 (176)
350 cd01853 Toc34_like Toc34-like 92.4 0.41 8.8E-06 37.5 5.8 66 1-67 81-162 (249)
351 KOG4273|consensus 92.3 0.17 3.6E-06 39.9 3.4 45 23-68 79-123 (418)
352 COG0378 HypB Ni2+-binding GTPa 92.2 0.27 5.9E-06 37.1 4.4 47 57-104 145-192 (202)
353 PF03308 ArgK: ArgK protein; 91.9 1.4 3.1E-05 34.8 8.2 75 21-104 141-221 (266)
354 cd02036 MinD Bacterial cell di 91.9 2.1 4.6E-05 30.7 8.9 81 2-89 66-146 (179)
355 KOG0085|consensus 91.7 0.031 6.6E-07 43.5 -1.2 68 1-68 201-280 (359)
356 KOG0459|consensus 91.6 0.19 4.2E-06 42.0 3.3 104 1-104 159-277 (501)
357 PHA02518 ParA-like protein; Pr 91.6 1.4 3.1E-05 32.7 7.8 80 2-88 80-163 (211)
358 KOG0469|consensus 91.5 0.29 6.2E-06 42.2 4.2 81 1-84 100-181 (842)
359 PF14331 ImcF-related_N: ImcF- 91.4 1.1 2.3E-05 35.5 7.2 47 22-68 25-83 (266)
360 KOG1424|consensus 91.1 0.37 8E-06 41.4 4.5 75 12-97 165-244 (562)
361 PRK10463 hydrogenase nickel in 90.8 0.48 1E-05 38.0 4.7 49 55-104 231-280 (290)
362 cd07627 BAR_Vps5p The Bin/Amph 90.6 3 6.5E-05 31.8 8.8 57 101-157 152-208 (216)
363 PTZ00258 GTP-binding protein; 90.6 1.5 3.3E-05 36.6 7.6 44 54-98 220-265 (390)
364 KOG0464|consensus 90.6 0.075 1.6E-06 44.6 -0.1 65 1-68 104-168 (753)
365 KOG0447|consensus 90.5 8 0.00017 34.1 11.9 69 12-84 438-508 (980)
366 KOG2484|consensus 90.3 0.44 9.4E-06 39.8 4.2 50 16-68 140-191 (435)
367 cd03111 CpaE_like This protein 90.2 1.3 2.9E-05 29.6 5.9 59 2-63 46-106 (106)
368 PF04548 AIG1: AIG1 family; I 89.8 1.2 2.6E-05 33.7 6.1 93 1-96 51-163 (212)
369 COG3640 CooC CO dehydrogenase 89.7 1.3 2.7E-05 34.6 5.9 73 3-87 138-211 (255)
370 COG4963 CpaE Flp pilus assembl 89.2 3.1 6.7E-05 34.5 8.3 78 2-88 221-299 (366)
371 KOG2423|consensus 88.1 2.9 6.3E-05 35.2 7.4 81 14-100 202-287 (572)
372 TIGR03371 cellulose_yhjQ cellu 88.0 3.9 8.5E-05 31.2 7.9 81 2-88 118-199 (246)
373 cd02117 NifH_like This family 87.3 10 0.00022 28.4 9.7 84 2-91 120-207 (212)
374 PF01656 CbiA: CobQ/CobB/MinD/ 85.4 2.1 4.5E-05 31.3 4.9 64 2-68 98-162 (195)
375 PRK13185 chlL protochlorophyll 83.7 11 0.00024 29.3 8.6 79 2-90 121-202 (270)
376 PF09325 Vps5: Vps5 C terminal 82.9 18 0.00039 27.5 9.3 59 102-160 173-231 (236)
377 KOG0466|consensus 81.9 0.85 1.8E-05 37.1 1.6 95 2-104 128-232 (466)
378 cd07664 BAR_SNX2 The Bin/Amphi 81.8 18 0.00039 28.1 8.9 53 101-153 168-220 (234)
379 TIGR01968 minD_bact septum sit 81.6 9.7 0.00021 29.1 7.5 61 2-66 115-175 (261)
380 TIGR00064 ftsY signal recognit 81.6 11 0.00023 29.9 7.8 88 2-103 158-258 (272)
381 PRK13505 formate--tetrahydrofo 81.5 10 0.00022 33.2 8.0 48 37-89 357-404 (557)
382 cd02037 MRP-like MRP (Multiple 79.9 20 0.00043 25.7 9.2 84 2-90 71-162 (169)
383 COG3523 IcmF Type VI protein s 79.6 30 0.00065 33.3 10.9 48 21-68 213-270 (1188)
384 cd02042 ParA ParA and ParB of 79.5 7.9 0.00017 25.3 5.6 42 2-46 43-84 (104)
385 cd02067 B12-binding B12 bindin 79.5 5 0.00011 27.2 4.7 58 22-92 50-108 (119)
386 cd02033 BchX Chlorophyllide re 79.5 20 0.00044 29.3 8.9 79 2-91 151-236 (329)
387 cd02032 Bchl_like This family 78.4 9.6 0.00021 29.6 6.6 79 2-90 119-200 (267)
388 KOG3929|consensus 77.5 1.1 2.3E-05 35.6 0.9 36 2-38 95-135 (363)
389 KOG2485|consensus 77.2 12 0.00027 30.4 6.8 61 17-84 41-101 (335)
390 CHL00175 minD septum-site dete 76.6 18 0.0004 28.3 7.7 62 2-67 130-191 (281)
391 cd03115 SRP The signal recogni 76.4 17 0.00038 26.1 7.1 78 2-89 86-169 (173)
392 PF03709 OKR_DC_1_N: Orn/Lys/A 76.3 11 0.00024 25.6 5.7 42 22-64 36-77 (115)
393 KOG0463|consensus 75.8 4.2 9.1E-05 34.1 3.9 65 1-68 221-287 (641)
394 TIGR01007 eps_fam capsular exo 74.8 17 0.00037 26.9 6.8 63 2-68 131-194 (204)
395 cd07596 BAR_SNX The Bin/Amphip 74.8 32 0.00068 25.5 9.3 60 104-163 157-216 (218)
396 TIGR01281 DPOR_bchL light-inde 73.0 34 0.00073 26.5 8.4 79 2-90 119-200 (268)
397 PRK13849 putative crown gall t 72.6 14 0.00029 28.5 5.9 61 2-65 87-151 (231)
398 TIGR00993 3a0901s04IAP86 chlor 72.6 8.6 0.00019 34.7 5.3 67 1-67 168-249 (763)
399 PRK10416 signal recognition pa 72.3 28 0.0006 28.3 7.9 88 2-103 200-300 (318)
400 PF10087 DUF2325: Uncharacteri 72.2 16 0.00035 23.9 5.5 16 76-91 65-80 (97)
401 cd02040 NifH NifH gene encodes 71.6 44 0.00095 25.7 9.0 83 2-90 120-206 (270)
402 PRK00771 signal recognition pa 71.1 65 0.0014 27.5 11.7 88 2-103 179-273 (437)
403 PRK10818 cell division inhibit 70.2 20 0.00044 27.8 6.6 83 2-88 117-206 (270)
404 PF00735 Septin: Septin; Inte 69.7 16 0.00035 29.1 5.9 44 22-68 113-156 (281)
405 COG1703 ArgK Putative periplas 69.4 61 0.0013 26.4 11.7 75 21-104 163-245 (323)
406 PF08438 MMR_HSR1_C: GTPase of 68.2 5.4 0.00012 27.2 2.5 32 60-96 1-32 (109)
407 TIGR02016 BchX chlorophyllide 65.7 66 0.0014 25.7 8.7 81 2-91 126-211 (296)
408 cd02071 MM_CoA_mut_B12_BD meth 64.5 42 0.00092 22.9 7.1 60 21-93 49-109 (122)
409 PRK14974 cell division protein 63.6 49 0.0011 27.1 7.7 89 2-104 226-321 (336)
410 cd01900 YchF YchF subfamily. 63.5 5.7 0.00012 31.6 2.2 33 1-33 64-103 (274)
411 TIGR01969 minD_arch cell divis 63.1 32 0.0007 26.0 6.3 61 2-67 112-173 (251)
412 TIGR00640 acid_CoA_mut_C methy 62.5 30 0.00064 24.3 5.5 59 22-93 53-112 (132)
413 PRK11670 antiporter inner memb 61.9 88 0.0019 25.9 9.0 86 2-90 219-310 (369)
414 PF14784 ECIST_Cterm: C-termin 60.2 20 0.00043 25.1 4.2 40 20-59 81-123 (126)
415 cd03114 ArgK-like The function 58.5 23 0.0005 25.2 4.5 29 2-33 95-123 (148)
416 CHL00072 chlL photochlorophyll 57.7 55 0.0012 26.0 6.9 63 2-66 119-184 (290)
417 TIGR00959 ffh signal recogniti 57.2 1.2E+02 0.0026 25.8 10.1 89 2-103 186-280 (428)
418 cd07665 BAR_SNX1 The Bin/Amphi 57.2 90 0.002 24.3 8.7 46 108-153 175-220 (234)
419 cd03112 CobW_like The function 56.6 25 0.00054 25.2 4.4 59 3-66 91-158 (158)
420 PF08468 MTS_N: Methyltransfer 55.8 37 0.0008 24.5 5.2 42 21-66 68-110 (155)
421 TIGR03815 CpaE_hom_Actino heli 55.2 1E+02 0.0023 24.6 8.3 78 2-91 208-285 (322)
422 COG1010 CobJ Precorrin-3B meth 54.4 37 0.00081 26.5 5.2 44 21-64 153-197 (249)
423 PF05852 DUF848: Gammaherpesvi 53.6 82 0.0018 22.7 7.1 44 119-162 40-83 (146)
424 PRK13230 nitrogenase reductase 53.1 1.1E+02 0.0023 23.9 8.6 83 2-90 120-206 (279)
425 TIGR03029 EpsG chain length de 53.0 55 0.0012 25.4 6.2 58 2-63 216-274 (274)
426 PF02310 B12-binding: B12 bind 52.7 41 0.00089 22.4 4.8 41 22-64 51-91 (121)
427 KOG0410|consensus 51.4 16 0.00034 30.2 2.8 73 20-104 255-332 (410)
428 TIGR01287 nifH nitrogenase iro 51.4 1.1E+02 0.0025 23.7 8.8 81 2-88 119-203 (275)
429 COG4502 5'(3')-deoxyribonucleo 51.4 29 0.00062 25.1 3.8 42 23-64 84-125 (180)
430 PF07015 VirC1: VirC1 protein; 50.3 54 0.0012 25.5 5.5 62 2-65 87-151 (231)
431 PF00072 Response_reg: Respons 50.0 34 0.00075 21.9 4.0 57 22-92 43-99 (112)
432 KOG2486|consensus 50.0 17 0.00037 29.2 2.8 97 2-104 186-307 (320)
433 cd01844 SGNH_hydrolase_like_6 49.3 62 0.0013 23.2 5.6 43 22-64 57-103 (177)
434 KOG1534|consensus 49.1 24 0.00053 27.4 3.4 67 2-68 101-178 (273)
435 PF09419 PGP_phosphatase: Mito 48.9 1.1E+02 0.0023 22.6 9.7 81 20-104 36-123 (168)
436 cd00954 NAL N-Acetylneuraminic 48.3 1.3E+02 0.0028 23.8 7.6 60 21-83 95-154 (288)
437 KOG0448|consensus 47.5 2.2E+02 0.0049 26.0 15.6 64 2-68 209-275 (749)
438 cd02070 corrinoid_protein_B12- 46.7 47 0.001 24.8 4.7 56 22-92 133-190 (201)
439 PRK13235 nifH nitrogenase redu 46.7 1.4E+02 0.003 23.3 9.4 62 2-64 121-186 (274)
440 PRK13232 nifH nitrogenase redu 46.6 1.4E+02 0.003 23.2 9.0 81 2-88 120-203 (273)
441 PF06490 FleQ: Flagellar regul 45.3 67 0.0014 21.5 4.9 27 40-66 55-81 (109)
442 PF06730 FAM92: FAM92 protein; 44.6 1.2E+02 0.0026 23.4 6.5 62 100-166 19-80 (219)
443 PRK12727 flagellar biosynthesi 44.1 2.2E+02 0.0047 25.3 8.7 87 2-102 432-524 (559)
444 cd02035 ArsA ArsA ATPase funct 44.1 92 0.002 23.4 6.0 65 2-68 117-184 (217)
445 PF14606 Lipase_GDSL_3: GDSL-l 43.8 47 0.001 24.7 4.2 56 6-61 41-100 (178)
446 COG0523 Putative GTPases (G3E 43.7 69 0.0015 26.1 5.5 67 22-95 116-184 (323)
447 PRK13507 formate--tetrahydrofo 43.0 1.7E+02 0.0036 26.1 7.8 48 38-90 387-434 (587)
448 TIGR03018 pepcterm_TyrKin exop 42.6 79 0.0017 23.5 5.4 46 2-49 152-197 (207)
449 COG2813 RsmC 16S RNA G1207 met 42.5 70 0.0015 25.9 5.2 44 21-68 36-80 (300)
450 PRK09601 GTP-binding protein Y 41.8 50 0.0011 27.5 4.5 33 1-33 68-107 (364)
451 PRK13233 nifH nitrogenase redu 40.8 1.7E+02 0.0037 22.7 8.2 61 22-88 143-206 (275)
452 cd05294 LDH-like_MDH_nadp A la 40.2 72 0.0016 25.7 5.1 49 18-66 68-126 (309)
453 cd00477 FTHFS Formyltetrahydro 39.7 1.9E+02 0.0041 25.4 7.6 48 38-90 342-389 (524)
454 TIGR01005 eps_transp_fam exopo 39.5 89 0.0019 28.4 6.1 64 2-68 659-722 (754)
455 PRK02261 methylaspartate mutas 39.4 1.3E+02 0.0029 21.0 8.0 66 22-94 54-120 (137)
456 PRK13660 hypothetical protein; 39.1 1.6E+02 0.0034 22.0 6.3 16 20-35 127-142 (182)
457 cd01832 SGNH_hydrolase_like_1 38.9 78 0.0017 22.5 4.8 39 21-61 66-112 (185)
458 PRK13869 plasmid-partitioning 38.8 1.4E+02 0.0031 25.0 6.8 63 2-67 255-327 (405)
459 TIGR01425 SRP54_euk signal rec 38.1 2.6E+02 0.0055 23.9 12.1 88 2-103 186-280 (429)
460 PF01268 FTHFS: Formate--tetra 37.8 37 0.00081 29.8 3.2 60 38-103 357-418 (557)
461 PRK13705 plasmid-partitioning 36.8 1.7E+02 0.0037 24.4 6.9 62 2-66 238-306 (388)
462 cd02069 methionine_synthase_B1 36.7 78 0.0017 24.1 4.6 59 22-91 139-199 (213)
463 TIGR00381 cdhD CO dehydrogenas 36.7 1.1E+02 0.0024 25.7 5.7 41 21-62 152-196 (389)
464 TIGR02370 pyl_corrinoid methyl 36.1 83 0.0018 23.5 4.6 55 22-91 135-191 (197)
465 PF07801 DUF1647: Protein of u 35.1 1.2E+02 0.0025 21.8 4.9 69 3-84 42-110 (142)
466 cd01339 LDH-like_MDH L-lactate 34.7 87 0.0019 24.9 4.8 48 19-66 63-120 (300)
467 PF09827 CRISPR_Cas2: CRISPR a 34.1 43 0.00093 20.8 2.4 24 25-48 3-26 (78)
468 TIGR03488 cas_Cas5p CRISPR-ass 34.0 41 0.00089 24.9 2.5 77 5-93 109-187 (237)
469 PRK13231 nitrogenase reductase 33.8 2.2E+02 0.0048 21.9 10.7 80 2-88 117-197 (264)
470 PHA02277 hypothetical protein 33.8 91 0.002 21.8 4.0 47 37-87 13-64 (150)
471 TIGR03566 FMN_reduc_MsuE FMN r 33.4 59 0.0013 23.5 3.4 46 18-63 64-110 (174)
472 PF12098 DUF3574: Protein of u 33.4 73 0.0016 21.5 3.5 37 1-38 38-74 (104)
473 PRK13957 indole-3-glycerol-pho 33.2 2.4E+02 0.0052 22.1 7.3 71 14-86 116-200 (247)
474 TIGR01763 MalateDH_bact malate 32.9 89 0.0019 25.1 4.5 47 20-66 67-123 (305)
475 cd02068 radical_SAM_B12_BD B12 32.8 1E+02 0.0022 20.9 4.3 43 21-66 38-80 (127)
476 cd01833 XynB_like SGNH_hydrola 32.2 1.5E+02 0.0034 20.4 5.3 41 21-61 39-86 (157)
477 KOG1486|consensus 32.2 1.6E+02 0.0035 23.7 5.6 41 54-103 238-278 (364)
478 cd00959 DeoC 2-deoxyribose-5-p 32.0 2.1E+02 0.0047 21.2 6.8 69 21-94 81-151 (203)
479 PF00205 TPP_enzyme_M: Thiamin 32.0 88 0.0019 21.4 3.9 40 53-97 11-50 (137)
480 cd01828 sialate_O-acetylestera 31.4 1.8E+02 0.004 20.3 5.9 42 21-62 47-95 (169)
481 cd02072 Glm_B12_BD B12 binding 31.3 1.8E+02 0.0038 20.4 5.3 65 22-93 50-115 (128)
482 TIGR01303 IMP_DH_rel_1 IMP deh 30.7 1E+02 0.0022 26.6 4.7 55 21-89 236-290 (475)
483 PLN02759 Formate--tetrahydrofo 30.5 3E+02 0.0065 24.8 7.5 43 40-87 438-480 (637)
484 cd00952 CHBPH_aldolase Trans-o 30.5 2.7E+02 0.0058 22.3 7.0 60 21-83 102-161 (309)
485 TIGR01319 glmL_fam conserved h 30.4 3.6E+02 0.0078 23.3 8.3 85 22-118 120-206 (463)
486 PF00056 Ldh_1_N: lactate/mala 30.2 56 0.0012 23.0 2.7 50 17-66 64-123 (141)
487 TIGR01771 L-LDH-NAD L-lactate 29.9 71 0.0015 25.6 3.5 49 18-66 60-118 (299)
488 cd01840 SGNH_hydrolase_yrhL_li 29.6 2E+02 0.0042 20.0 6.5 62 21-87 49-111 (150)
489 cd01338 MDH_choloroplast_like 29.5 1.1E+02 0.0024 24.8 4.6 49 18-66 74-133 (322)
490 PRK13234 nifH nitrogenase redu 29.2 2.9E+02 0.0063 21.9 8.8 81 2-88 123-207 (295)
491 TIGR01772 MDH_euk_gproteo mala 29.1 1.5E+02 0.0032 24.0 5.3 49 18-66 63-121 (312)
492 COG0329 DapA Dihydrodipicolina 28.9 3E+02 0.0066 22.0 7.2 65 22-90 99-163 (299)
493 cd05291 HicDH_like L-2-hydroxy 28.9 98 0.0021 24.7 4.2 48 19-66 65-122 (306)
494 cd00650 LDH_MDH_like NAD-depen 28.8 70 0.0015 24.9 3.3 49 18-66 66-124 (263)
495 PF00532 Peripla_BP_1: Peripla 28.8 89 0.0019 24.4 3.9 41 18-67 52-92 (279)
496 PRK06756 flavodoxin; Provision 28.7 1.2E+02 0.0027 21.0 4.3 44 19-62 46-91 (148)
497 PRK13506 formate--tetrahydrofo 28.5 3.8E+02 0.0082 23.9 7.7 68 39-115 380-450 (578)
498 cd00300 LDH_like L-lactate deh 28.3 92 0.002 24.9 3.9 49 18-66 62-120 (300)
499 PLN00135 malate dehydrogenase 28.2 1.2E+02 0.0027 24.5 4.6 49 18-66 54-113 (309)
500 COG5400 Uncharacterized protei 28.0 57 0.0012 24.1 2.4 17 22-38 131-147 (205)
No 1
>KOG0084|consensus
Probab=100.00 E-value=8.8e-34 Score=208.42 Aligned_cols=103 Identities=34% Similarity=0.541 Sum_probs=100.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
||||||+|||+|+++..+|||+|||+|+|||+|+.+||+++..|+.++.++. +++|.+|||||||+.+ .+.|+.++++
T Consensus 60 lQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~-~~~v~~~~a~ 138 (205)
T KOG0084|consen 60 LQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE-KRVVSTEEAQ 138 (205)
T ss_pred EEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh-heecCHHHHH
Confidence 6899999999999999999999999999999999999999999999999999 7889999999999999 9999999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.|+.+++++.|+|+|||++.||+++
T Consensus 139 ~fa~~~~~~~f~ETSAK~~~NVe~~ 163 (205)
T KOG0084|consen 139 EFADELGIPIFLETSAKDSTNVEDA 163 (205)
T ss_pred HHHHhcCCcceeecccCCccCHHHH
Confidence 9999999998999999999999987
No 2
>KOG0078|consensus
Probab=99.98 E-value=3.1e-32 Score=202.48 Aligned_cols=111 Identities=31% Similarity=0.440 Sum_probs=102.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+|+|||+||++|..+...||++|+|+++|||+|+..||+++..|+..|.++. +++|++|||||+|+.+ .|+|+.+.++
T Consensus 63 lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~-~R~V~~e~ge 141 (207)
T KOG0078|consen 63 LQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE-KRQVSKERGE 141 (207)
T ss_pred EEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc-cccccHHHHH
Confidence 5899999999999999999999999999999999999999999999999998 6999999999999999 9999999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhHHHHHHHHHHHH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKF 115 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~~~~~ 115 (170)
++|.++|++ |+|+||++|.||+++ |..++.+..
T Consensus 142 ~lA~e~G~~-F~EtSAk~~~NI~ea--F~~La~~i~ 174 (207)
T KOG0078|consen 142 ALAREYGIK-FFETSAKTNFNIEEA--FLSLARDIL 174 (207)
T ss_pred HHHHHhCCe-EEEccccCCCCHHHH--HHHHHHHHH
Confidence 999999995 778999999999988 444444444
No 3
>KOG0098|consensus
Probab=99.97 E-value=4.9e-31 Score=192.36 Aligned_cols=102 Identities=36% Similarity=0.536 Sum_probs=98.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
|+||||+|||.|.++...||++|.|+|||||+++++||..+..|+.+++++. +|..++|+|||+||.. .|.|+.+|++
T Consensus 57 lqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~-rR~Vs~EEGe 135 (216)
T KOG0098|consen 57 LQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA-RREVSKEEGE 135 (216)
T ss_pred EEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc-cccccHHHHH
Confidence 6899999999999999999999999999999999999999999999999997 9999999999999999 9999999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.||+++|.+ |+++||++++||+|+
T Consensus 136 aFA~ehgLi-fmETSakt~~~VEEa 159 (216)
T KOG0098|consen 136 AFAREHGLI-FMETSAKTAENVEEA 159 (216)
T ss_pred HHHHHcCce-eehhhhhhhhhHHHH
Confidence 999999986 559999999999999
No 4
>KOG0092|consensus
Probab=99.97 E-value=2e-30 Score=190.11 Aligned_cols=102 Identities=29% Similarity=0.435 Sum_probs=96.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
|+||||+|||+|.++.++|||+|+++|+|||+|+.+||..+++|+.++.+.. +++-+.|||||+||.+ .|.|..+++.
T Consensus 56 feIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~-~R~V~~~ea~ 134 (200)
T KOG0092|consen 56 FEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE-RREVEFEEAQ 134 (200)
T ss_pred EEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh-cccccHHHHH
Confidence 5799999999999999999999999999999999999999999999998887 7788889999999999 8999999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+|.+.|.+ |+|+|||++.||.+.
T Consensus 135 ~yAe~~gll-~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 135 AYAESQGLL-FFETSAKTGENVNEI 158 (200)
T ss_pred HHHHhcCCE-EEEEecccccCHHHH
Confidence 999999985 778999999999964
No 5
>KOG0093|consensus
Probab=99.97 E-value=2.3e-30 Score=182.50 Aligned_cols=102 Identities=29% Similarity=0.526 Sum_probs=98.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+|||||+|||+|+.+...||++++|+|+|||+|+.+||..++.|.-.|..++ .++|+||||||||+.+ +|.|+.+.++
T Consensus 72 lQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~-eRvis~e~g~ 150 (193)
T KOG0093|consen 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS-ERVISHERGR 150 (193)
T ss_pred EEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc-ceeeeHHHHH
Confidence 6899999999999999999999999999999999999999999999999988 8999999999999999 9999999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++.++|+. |+|+|||.+.||..+
T Consensus 151 ~l~~~LGfe-fFEtSaK~NinVk~~ 174 (193)
T KOG0093|consen 151 QLADQLGFE-FFETSAKENINVKQV 174 (193)
T ss_pred HHHHHhChH-HhhhcccccccHHHH
Confidence 999999995 668999999999977
No 6
>KOG0087|consensus
Probab=99.96 E-value=7.7e-30 Score=189.41 Aligned_cols=119 Identities=31% Similarity=0.475 Sum_probs=107.8
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
|||||+|||+|+.+...||++|.|+++|||+|.+.||+++.+|+.+++.+. ++++++|||||+||.+ .|.|+.+++..
T Consensus 66 qIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~-lraV~te~~k~ 144 (222)
T KOG0087|consen 66 QIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH-LRAVPTEDGKA 144 (222)
T ss_pred eeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh-ccccchhhhHh
Confidence 799999999999999999999999999999999999999999999999999 8999999999999999 99999999999
Q ss_pred HHHhcCCCeEEEcccCCcchhhhHHHHHHHHHHHHHHhhHHHHH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKE 124 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 124 (170)
+|...+. +|+++||.++.||+.+ |...+-+++..++++...
T Consensus 145 ~Ae~~~l-~f~EtSAl~~tNVe~a--F~~~l~~I~~~vs~k~~~ 185 (222)
T KOG0087|consen 145 FAEKEGL-FFLETSALDATNVEKA--FERVLTEIYKIVSKKQLD 185 (222)
T ss_pred HHHhcCc-eEEEecccccccHHHH--HHHHHHHHHHHHHHHhhh
Confidence 9998887 6889999999999999 455555565555555443
No 7
>KOG0091|consensus
Probab=99.96 E-value=1.6e-29 Score=180.99 Aligned_cols=113 Identities=32% Similarity=0.467 Sum_probs=100.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--C-CCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--E-NAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~-~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
||+|||+|||+|+++.++||+++-|+++|||+||+.||+.+..|+.+...+. | .+.+.|||+|+||.. .|+|+.+|
T Consensus 60 lqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S-qRqVt~EE 138 (213)
T KOG0091|consen 60 LQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS-QRQVTAEE 138 (213)
T ss_pred EEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh-hccccHHH
Confidence 6899999999999999999999999999999999999999999999987666 4 445679999999999 99999999
Q ss_pred HHHHHHhcCCCeEEEcccCCcchhhhHHHH-HHHHHHHH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEPQEVVEAEQV-QQEACDKF 115 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~~~~-~~~~~~~~ 115 (170)
++.+|+.+|+ .|+|+||++|.||+++|.+ .+.++..+
T Consensus 139 aEklAa~hgM-~FVETSak~g~NVeEAF~mlaqeIf~~i 176 (213)
T KOG0091|consen 139 AEKLAASHGM-AFVETSAKNGCNVEEAFDMLAQEIFQAI 176 (213)
T ss_pred HHHHHHhcCc-eEEEecccCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999 6889999999999999544 44444444
No 8
>KOG0094|consensus
Probab=99.96 E-value=2.6e-29 Score=184.63 Aligned_cols=102 Identities=28% Similarity=0.453 Sum_probs=97.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
||+|||+|||+|+++.+.|++++.++|+|||++|..||+++..|++.++... .++-++|||||.||.+ .|+++.+|+
T Consensus 73 LQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d-krqvs~eEg 151 (221)
T KOG0094|consen 73 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD-KRQVSIEEG 151 (221)
T ss_pred EEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc-hhhhhHHHH
Confidence 6899999999999999999999999999999999999999999999999887 3588899999999999 999999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
...|++++. .|+++||+.|.||.+.
T Consensus 152 ~~kAkel~a-~f~etsak~g~NVk~l 176 (221)
T KOG0094|consen 152 ERKAKELNA-EFIETSAKAGENVKQL 176 (221)
T ss_pred HHHHHHhCc-EEEEecccCCCCHHHH
Confidence 999999999 7889999999999955
No 9
>KOG0081|consensus
Probab=99.96 E-value=4.7e-29 Score=178.03 Aligned_cols=120 Identities=32% Similarity=0.493 Sum_probs=106.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
||+|||+|||+|+++...++++|-|++++||+|+.+||-++++|+.++..+. .++-+|++|||+|+.+ .|+|+.+++
T Consensus 69 LQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~-~R~Vs~~qa 147 (219)
T KOG0081|consen 69 LQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED-QRVVSEDQA 147 (219)
T ss_pred EeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh-hhhhhHHHH
Confidence 6899999999999999999999999999999999999999999999987655 8888999999999999 999999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH-HHHHHHHHHHHHHhhHHH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA-EQVQQEACDKFEQMSDKA 122 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~-~~~~~~~~~~~~~~~~~~ 122 (170)
.++|..+|+| |+|+||-+|.||+++ +-+...+.+.+++..++.
T Consensus 148 ~~La~kyglP-YfETSA~tg~Nv~kave~LldlvM~Rie~~v~~s 191 (219)
T KOG0081|consen 148 AALADKYGLP-YFETSACTGTNVEKAVELLLDLVMKRIEQCVEKS 191 (219)
T ss_pred HHHHHHhCCC-eeeeccccCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998 558999999999998 545556666665555443
No 10
>KOG0080|consensus
Probab=99.96 E-value=3.3e-29 Score=179.00 Aligned_cols=102 Identities=28% Similarity=0.427 Sum_probs=97.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
|.||||+|||+|+.+.++||++|.|+|+|||+|.++||..+..|+.++..|+ +++..++||||+|... .|.|+.+|+
T Consensus 62 laiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes-~R~V~reEG 140 (209)
T KOG0080|consen 62 LAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES-ERVVDREEG 140 (209)
T ss_pred EEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh-cccccHHHH
Confidence 4699999999999999999999999999999999999999999999999998 7888899999999988 899999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..||+.+++ .|+||||++.+||+.+
T Consensus 141 ~kfAr~h~~-LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 141 LKFARKHRC-LFIECSAKTRENVQCC 165 (209)
T ss_pred HHHHHhhCc-EEEEcchhhhccHHHH
Confidence 999999998 5889999999999966
No 11
>KOG0083|consensus
Probab=99.96 E-value=2.9e-29 Score=174.58 Aligned_cols=102 Identities=35% Similarity=0.494 Sum_probs=98.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
||+|||+|||+|++....||+.+|+.+++||++++.||++++.|+.+|.++. ..+.+.++|||||+.. +|.|..++++
T Consensus 49 lqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~-er~v~~ddg~ 127 (192)
T KOG0083|consen 49 LQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH-ERAVKRDDGE 127 (192)
T ss_pred EEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch-hhccccchHH
Confidence 5899999999999999999999999999999999999999999999999998 7889999999999988 8999999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+|+.+++| |+|+||++|-||+.+
T Consensus 128 kla~~y~ip-fmetsaktg~nvd~a 151 (192)
T KOG0083|consen 128 KLAEAYGIP-FMETSAKTGFNVDLA 151 (192)
T ss_pred HHHHHHCCC-ceeccccccccHhHH
Confidence 999999997 779999999999977
No 12
>KOG0079|consensus
Probab=99.96 E-value=7.9e-29 Score=174.91 Aligned_cols=104 Identities=29% Similarity=0.425 Sum_probs=99.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
|+||||+|||+|+.+...||++.+|+++|||+|+.+||.+++.|++++.+.++.+|-||||||+|.++ .+.|..++++.
T Consensus 59 LqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~-RrvV~t~dAr~ 137 (198)
T KOG0079|consen 59 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPE-RRVVDTEDARA 137 (198)
T ss_pred EEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCcc-ceeeehHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHhcCCCeEEEcccCCcchhhhHHH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEAEQ 106 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~~~ 106 (170)
||...|+. ++|+|||.++|+++.|.
T Consensus 138 ~A~~mgie-~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 138 FALQMGIE-LFETSAKENENVEAMFH 162 (198)
T ss_pred HHHhcCch-heehhhhhcccchHHHH
Confidence 99999996 55899999999997743
No 13
>KOG0086|consensus
Probab=99.96 E-value=1.3e-28 Score=174.79 Aligned_cols=112 Identities=34% Similarity=0.522 Sum_probs=103.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
||||||+|||+|++..+.||++|-|.++|||+|+++||+.+.+|+..++... +++.+||+|||.||.. .|+|+..++.
T Consensus 60 LQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~-~R~VtflEAs 138 (214)
T KOG0086|consen 60 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEAS 138 (214)
T ss_pred EEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh-hhhhhHHHHH
Confidence 6899999999999999999999999999999999999999999999998877 8999999999999999 9999999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhHHHHHHHHHHHHH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFE 116 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~~~~~~ 116 (170)
+||++..+ .|.|+||.+|+||+|+ |.+.+..++.
T Consensus 139 ~FaqEnel-~flETSa~TGeNVEEa--Fl~c~~tIl~ 172 (214)
T KOG0086|consen 139 RFAQENEL-MFLETSALTGENVEEA--FLKCARTILN 172 (214)
T ss_pred hhhcccce-eeeeecccccccHHHH--HHHHHHHHHH
Confidence 99999998 7889999999999999 4544444443
No 14
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.96 E-value=4.4e-28 Score=180.89 Aligned_cols=105 Identities=20% Similarity=0.345 Sum_probs=96.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
|+||||+|++.|..+++.||+++|++|+|||++++.||+.+ ..|++.+....+++|++|||||+|+.++
T Consensus 55 l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~ 134 (182)
T cd04172 55 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNH 134 (182)
T ss_pred EEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhc
Confidence 57999999999999999999999999999999999999997 7999999988889999999999999641
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcch-hhhHH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQE-VVEAE 105 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~-v~~~~ 105 (170)
.++|+.++++++|+++++..|+||||++|.| |.++|
T Consensus 135 ~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F 172 (182)
T cd04172 135 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 172 (182)
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHH
Confidence 3579999999999999987788999999998 99874
No 15
>KOG0394|consensus
Probab=99.95 E-value=3.4e-28 Score=177.18 Aligned_cols=105 Identities=30% Similarity=0.500 Sum_probs=97.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCC-CCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEG-TTPQVT 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~-~~~~v~ 74 (170)
||||||+|||+|.++.-.+||+||++++|||++++.||+++.+|..++..+. ...|+||+|||+|+.+ ..|+|+
T Consensus 60 lQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS 139 (210)
T KOG0394|consen 60 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVS 139 (210)
T ss_pred EEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceee
Confidence 5899999999999999999999999999999999999999999999988776 3689999999999976 249999
Q ss_pred HHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 75 EADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 75 ~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
...++.||++.|-..|+|+|||+..||.++|
T Consensus 140 ~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AF 170 (210)
T KOG0394|consen 140 EKKAQTWCKSKGNIPYFETSAKEATNVDEAF 170 (210)
T ss_pred HHHHHHHHHhcCCceeEEecccccccHHHHH
Confidence 9999999999988788899999999999773
No 16
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=1.4e-27 Score=177.36 Aligned_cols=104 Identities=28% Similarity=0.387 Sum_probs=96.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCCC---------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGTT--------- 70 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~--------- 70 (170)
|+||||+|+++|..+++.|++++|++|+|||+++++||+.+ ..|+.++....+++|++|||||+|+.+ .
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~-~~~~~~~~~~ 129 (176)
T cd04133 51 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD-DKQYLADHPG 129 (176)
T ss_pred EEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc-ChhhhhhccC
Confidence 57999999999999999999999999999999999999998 689999988778899999999999965 3
Q ss_pred -CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 71 -PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 71 -~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
+.|+.+++.++++..++..|+||||++|.||+++|
T Consensus 130 ~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F 165 (176)
T cd04133 130 ASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165 (176)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHH
Confidence 35999999999999998778899999999999873
No 17
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.95 E-value=2.4e-27 Score=177.90 Aligned_cols=102 Identities=28% Similarity=0.389 Sum_probs=96.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
|+||||+|+++|..+++.|++++|++|+|||++++.||+.+..|++++..+.+++|+||||||+|+.+ .+.|+.++++.
T Consensus 57 l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~-~~~v~~~~~~~ 135 (189)
T cd04121 57 LQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF-KRQVATEQAQA 135 (189)
T ss_pred EEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchh-ccCCCHHHHHH
Confidence 57999999999999999999999999999999999999999999999988778999999999999988 78999999999
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++..++ .|++|||++|.||+++
T Consensus 136 ~a~~~~~-~~~e~SAk~g~~V~~~ 158 (189)
T cd04121 136 YAERNGM-TFFEVSPLCNFNITES 158 (189)
T ss_pred HHHHcCC-EEEEecCCCCCCHHHH
Confidence 9999987 4779999999999987
No 18
>KOG0088|consensus
Probab=99.95 E-value=5.2e-28 Score=172.59 Aligned_cols=103 Identities=26% Similarity=0.486 Sum_probs=97.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
|.||||+|||+|..+.+.||++++|+++|||+||++||+.+++|..+++... ..+.+++||||+||.. .|.|+..++.
T Consensus 64 L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe-eR~Vt~qeAe 142 (218)
T KOG0088|consen 64 LHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE-ERQVTRQEAE 142 (218)
T ss_pred eeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH-hhhhhHHHHH
Confidence 5799999999999999999999999999999999999999999999999887 6788999999999999 9999999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+|...|+. |+++||+.+.||.+.|
T Consensus 143 ~YAesvGA~-y~eTSAk~N~Gi~elF 167 (218)
T KOG0088|consen 143 AYAESVGAL-YMETSAKDNVGISELF 167 (218)
T ss_pred HHHHhhchh-heecccccccCHHHHH
Confidence 999999995 6689999999999873
No 19
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=2.4e-27 Score=176.23 Aligned_cols=105 Identities=18% Similarity=0.312 Sum_probs=96.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
++||||+|++.|..+++.+++++|++|+|||+++++||+.+ ..|+..+.++.+++|++|||||+|+.++
T Consensus 51 l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~ 130 (178)
T cd04131 51 LSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQ 130 (178)
T ss_pred EEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhc
Confidence 57999999999999999999999999999999999999996 7999999988889999999999999641
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcch-hhhHH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQE-VVEAE 105 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~-v~~~~ 105 (170)
.++|+.+++.++|+++++..|+||||++|.| |+++|
T Consensus 131 ~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F 168 (178)
T cd04131 131 RQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIF 168 (178)
T ss_pred CCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHH
Confidence 3579999999999999987789999999995 99874
No 20
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=3.6e-27 Score=181.98 Aligned_cols=105 Identities=17% Similarity=0.312 Sum_probs=96.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
|+||||+|++.|..+++.||+++|++|+|||+++++||+++ ..|+.++....+++|+||||||+|+..+
T Consensus 63 l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~ 142 (232)
T cd04174 63 LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQ 142 (232)
T ss_pred EEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccc
Confidence 57999999999999999999999999999999999999985 8999999887788999999999999641
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcc-hhhhHH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQ-EVVEAE 105 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~-~v~~~~ 105 (170)
.+.|+.++++++|+++++..|+||||++|. ||+++|
T Consensus 143 ~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F 180 (232)
T cd04174 143 KQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIF 180 (232)
T ss_pred cCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHH
Confidence 268999999999999999778899999997 799884
No 21
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.95 E-value=5.7e-27 Score=177.58 Aligned_cols=103 Identities=35% Similarity=0.557 Sum_probs=94.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
|+||||+|+++|..+++.||+++||+|+|||+++++||+.+..|+..+.+.. +++|++|||||+|+.. .+.|+.++++
T Consensus 51 l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~ 129 (202)
T cd04120 51 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREISRQQGE 129 (202)
T ss_pred EEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHH
Confidence 5799999999999999999999999999999999999999999999887765 6899999999999987 7899999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++++.....|++|||++|.||+++
T Consensus 130 ~~a~~~~~~~~~etSAktg~gV~e~ 154 (202)
T cd04120 130 KFAQQITGMRFCEASAKDNFNVDEI 154 (202)
T ss_pred HHHHhcCCCEEEEecCCCCCCHHHH
Confidence 9998863335789999999999987
No 22
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.94 E-value=6.2e-27 Score=175.69 Aligned_cols=104 Identities=21% Similarity=0.363 Sum_probs=94.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCC---------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTT--------- 70 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~--------- 70 (170)
|+||||+|+++|..+++.||+++|++|+|||++++.||+.+. .|+..+....+++|++|||||+|+.+..
T Consensus 53 l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~ 132 (191)
T cd01875 53 LNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQ 132 (191)
T ss_pred EEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhc
Confidence 579999999999999999999999999999999999999997 6998888776889999999999997521
Q ss_pred --CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 71 --PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 --~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+.|+.+++..+|+.++...|++|||++|.||.++
T Consensus 133 ~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~ 168 (191)
T cd01875 133 GQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEV 168 (191)
T ss_pred cCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHH
Confidence 4588899999999999777889999999999987
No 23
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=1.1e-25 Score=169.66 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=91.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
|+||||+|++. .+++.||+++|++|+|||++++.||+.+. .|+..+....+++|++|||||+|+.+.
T Consensus 68 l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~ 145 (195)
T cd01873 68 LRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARR 145 (195)
T ss_pred EEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccc
Confidence 57999999986 46778999999999999999999999997 599999877788999999999998641
Q ss_pred --------CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 70 --------TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 70 --------~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+.|+.++++++|+++|+ .|+||||++|.||+++|
T Consensus 146 ~~~~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F 188 (195)
T cd01873 146 PLARPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVF 188 (195)
T ss_pred ccccccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHH
Confidence 378999999999999998 68899999999999873
No 24
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.93 E-value=1.5e-25 Score=165.96 Aligned_cols=105 Identities=17% Similarity=0.273 Sum_probs=95.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
|+||||+|+++|..+++.+++++|++|+|||+++++||+.+. .|+..+....+++|++|||||+|+.++
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~ 130 (175)
T cd01874 51 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN 130 (175)
T ss_pred EEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhc
Confidence 479999999999999999999999999999999999999997 599998877788999999999998652
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+.|+.+++++++++.+...|++|||++|.||.+++
T Consensus 131 ~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f 167 (175)
T cd01874 131 KQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167 (175)
T ss_pred cCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHH
Confidence 268999999999999987778999999999999873
No 25
>PTZ00099 rab6; Provisional
Probab=99.93 E-value=3.3e-25 Score=164.56 Aligned_cols=102 Identities=28% Similarity=0.415 Sum_probs=94.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||+|+++|..+++.|+++||++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.. .+.++.+++.
T Consensus 31 l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~-~~~v~~~e~~ 109 (176)
T PTZ00099 31 LQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD-LRKVTYEEGM 109 (176)
T ss_pred EEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999987765 6899999999999987 7789999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++.++. .|+++||++|.||.++
T Consensus 110 ~~~~~~~~-~~~e~SAk~g~nV~~l 133 (176)
T PTZ00099 110 QKAQEYNT-MFHETSAKAGHNIKVL 133 (176)
T ss_pred HHHHHcCC-EEEEEECCCCCCHHHH
Confidence 99998887 5789999999999987
No 26
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.93 E-value=3.1e-25 Score=170.26 Aligned_cols=108 Identities=18% Similarity=0.283 Sum_probs=95.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
|+||||+|++.|..+++.+|+++|++|+|||+++++||+.+ ..|...+....+++|+||||||+|+..+
T Consensus 51 L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~ 130 (222)
T cd04173 51 LNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQ 130 (222)
T ss_pred EEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhc
Confidence 57999999999999999999999999999999999999999 5788888777789999999999999652
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcch-hhhHHHHH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQE-VVEAEQVQ 108 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~-v~~~~~~~ 108 (170)
..+|+.+++..+|++.|+..|+||||+++.+ |.++|...
T Consensus 131 ~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~ 171 (222)
T cd04173 131 RLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVA 171 (222)
T ss_pred cCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHH
Confidence 1258999999999999987899999999985 99885443
No 27
>KOG0095|consensus
Probab=99.93 E-value=7e-26 Score=160.37 Aligned_cols=113 Identities=35% Similarity=0.515 Sum_probs=101.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
||||||+|||+|+++..+||+.|+++|+|||++-..||+.+..|+.+|.++. ..+-.|+||||.|+.+ .|+|+..-++
T Consensus 58 lqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d-rrevp~qige 136 (213)
T KOG0095|consen 58 LQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD-RREVPQQIGE 136 (213)
T ss_pred EEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh-hhhhhHHHHH
Confidence 6899999999999999999999999999999999999999999999999998 6788899999999998 8999999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhHHHHHHHHHHHHHH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQ 117 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~~~~~~~ 117 (170)
+|+.... .+|.|+||+...||+.. |.+..+....+
T Consensus 137 efs~~qd-myfletsakea~nve~l--f~~~a~rli~~ 171 (213)
T KOG0095|consen 137 EFSEAQD-MYFLETSAKEADNVEKL--FLDLACRLISE 171 (213)
T ss_pred HHHHhhh-hhhhhhcccchhhHHHH--HHHHHHHHHHH
Confidence 9998854 48999999999999976 45555555443
No 28
>KOG0097|consensus
Probab=99.93 E-value=1.8e-25 Score=157.18 Aligned_cols=102 Identities=33% Similarity=0.546 Sum_probs=97.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
|+||||+|||+|+...++||+++-|.+.|||++.+.+++.+..|+...+... |+..++++|||.|+.. .|.|+.+++.
T Consensus 62 lqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~-qrdv~yeeak 140 (215)
T KOG0097|consen 62 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES-QRDVTYEEAK 140 (215)
T ss_pred EEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh-cccCcHHHHH
Confidence 5899999999999999999999999999999999999999999999988776 8999999999999999 9999999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+|+.+.|. .|.++||++|+||+++
T Consensus 141 ~faeengl-~fle~saktg~nveda 164 (215)
T KOG0097|consen 141 EFAEENGL-MFLEASAKTGQNVEDA 164 (215)
T ss_pred HHHhhcCe-EEEEecccccCcHHHH
Confidence 99999998 5889999999999987
No 29
>KOG0393|consensus
Probab=99.93 E-value=2.1e-25 Score=166.28 Aligned_cols=105 Identities=24% Similarity=0.326 Sum_probs=98.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
|.+|||+||+.|..+++..|.++|+|++||++.+++||+++. .|++++.+++|++|+||||+|.||.++
T Consensus 55 L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~ 134 (198)
T KOG0393|consen 55 LGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQ 134 (198)
T ss_pred EeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhc
Confidence 579999999999999999999999999999999999999985 899999999999999999999999863
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
...|+.+++..+|++.|+..|+||||++..|+.++|
T Consensus 135 ~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF 171 (198)
T KOG0393|consen 135 GLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVF 171 (198)
T ss_pred cCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHH
Confidence 247999999999999999999999999999999873
No 30
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.93 E-value=5.8e-25 Score=162.38 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=94.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||+|++.|..+++.+++++|++|+|||++++.||+.+..|+..+.+.. +++|++|||||+|+.+ .+.++.+++
T Consensus 52 l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~ 130 (172)
T cd04141 52 LDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES-QRQVTTEEG 130 (172)
T ss_pred EEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh-cCccCHHHH
Confidence 4799999999999999999999999999999999999999999988877653 6899999999999987 788999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.++++ |++|||++|.||+++
T Consensus 131 ~~~a~~~~~~-~~e~Sa~~~~~v~~~ 155 (172)
T cd04141 131 RNLAREFNCP-FFETSAALRHYIDDA 155 (172)
T ss_pred HHHHHHhCCE-EEEEecCCCCCHHHH
Confidence 9999999984 779999999999987
No 31
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.92 E-value=9.7e-25 Score=159.60 Aligned_cols=102 Identities=32% Similarity=0.535 Sum_probs=94.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... ++.|+++||||+|+.. .+.++.+++.
T Consensus 53 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~-~~~~~~~~~~ 131 (166)
T cd04122 53 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA-QRDVTYEEAK 131 (166)
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCcCHHHHH
Confidence 4799999999999999999999999999999999999999999999987765 7899999999999988 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++++..++ .|+++||++|.||.++
T Consensus 132 ~~~~~~~~-~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 132 QFADENGL-LFLECSAKTGENVEDA 155 (166)
T ss_pred HHHHHcCC-EEEEEECCCCCCHHHH
Confidence 99999887 4778999999999987
No 32
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.92 E-value=7.2e-25 Score=162.20 Aligned_cols=105 Identities=21% Similarity=0.294 Sum_probs=94.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
|+||||+|++.|..+++.+++++|++|+|||+++++||+.+. .|+..+....+++|++|||||+|+.+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~ 130 (174)
T cd01871 51 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEK 130 (174)
T ss_pred EEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhc
Confidence 479999999999999999999999999999999999999996 699888777688999999999999641
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+.|+.+++..+++.++...|++|||++|.||++++
T Consensus 131 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 167 (174)
T cd01871 131 KLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVF 167 (174)
T ss_pred cCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHH
Confidence 246899999999999997678899999999999873
No 33
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.92 E-value=2e-24 Score=165.59 Aligned_cols=104 Identities=29% Similarity=0.416 Sum_probs=93.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCC-----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEG----------- 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~----------- 68 (170)
|.||||+|++.|..++..|++++|++|+|||+++++||+.+..|+..+.+.. +++|+||||||+|+.+
T Consensus 46 l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~ 125 (220)
T cd04126 46 ISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDA 125 (220)
T ss_pred EEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccc
Confidence 4799999999999999999999999999999999999999999888777654 6799999999999864
Q ss_pred -------CCCCCCHHHHHHHHHhcCC-------------CeEEEcccCCcchhhhH
Q psy17235 69 -------TTPQVTEADMENFWSRRSS-------------RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 69 -------~~~~v~~~~~~~~a~~~~~-------------~~~~e~Sa~~~~~v~~~ 104 (170)
..+.|+.+++..+|++.+. ..|+||||++|.||+++
T Consensus 126 ~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~el 181 (220)
T cd04126 126 GDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDEL 181 (220)
T ss_pred cccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHH
Confidence 1588999999999999872 35889999999999987
No 34
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.92 E-value=2.5e-24 Score=162.50 Aligned_cols=103 Identities=26% Similarity=0.406 Sum_probs=94.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE 75 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~ 75 (170)
++||||+|++.|..+++.+++++|++|+|||++++.||+.+..|+..+.... .++|++|||||+|+.. .+.++.
T Consensus 52 l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~ 130 (201)
T cd04107 52 LQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK-RLAKDG 130 (201)
T ss_pred EEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc-ccccCH
Confidence 4799999999999999999999999999999999999999999998886542 5789999999999986 678999
Q ss_pred HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++.++++..++..|+++||++|.||+++
T Consensus 131 ~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 131 EQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred HHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 99999999999767889999999999987
No 35
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.92 E-value=2.1e-24 Score=159.53 Aligned_cols=102 Identities=34% Similarity=0.555 Sum_probs=94.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||+++|..++..+++++|++++|||+++++||..+..|+..+.... +++|+++||||+|+.+ .+.++.+++
T Consensus 65 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~v~~~~~ 143 (180)
T cd04127 65 LQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED-QRQVSEEQA 143 (180)
T ss_pred EEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh-cCccCHHHH
Confidence 4799999999999999999999999999999999999999999999987764 6899999999999987 788999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++++.++++ |+++||++|.|++++
T Consensus 144 ~~~~~~~~~~-~~e~Sak~~~~v~~l 168 (180)
T cd04127 144 KALADKYGIP-YFETSAATGTNVEKA 168 (180)
T ss_pred HHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 9999999975 779999999999987
No 36
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.92 E-value=2.3e-24 Score=163.14 Aligned_cols=100 Identities=22% Similarity=0.479 Sum_probs=89.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
++||||+|+++|..+++.||+++|++|+|||++++.||+.+..|+.++.+..+++|++|||||+|+.. +.+..++ ..
T Consensus 46 l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~--~~v~~~~-~~ 122 (200)
T smart00176 46 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD--RKVKAKS-IT 122 (200)
T ss_pred EEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc--ccCCHHH-HH
Confidence 57999999999999999999999999999999999999999999999998878999999999999964 4566555 46
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++..++. |++|||++|.||.++
T Consensus 123 ~~~~~~~~-~~e~SAk~~~~v~~~ 145 (200)
T smart00176 123 FHRKKNLQ-YYDISAKSNYNFEKP 145 (200)
T ss_pred HHHHcCCE-EEEEeCCCCCCHHHH
Confidence 78877774 778999999999988
No 37
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=3.4e-24 Score=160.45 Aligned_cols=103 Identities=25% Similarity=0.322 Sum_probs=93.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCCC--------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTTP-------- 71 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~-------- 71 (170)
++||||+|++.|..+++.+++++|++++|||+++++||+.+. .|+..+....+++|++|||||+|+.+ .+
T Consensus 50 l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~-~~~~~~~~~~ 128 (189)
T cd04134 50 LSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLRE-ARNERDDLQR 128 (189)
T ss_pred EEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc-ChhhHHHHhh
Confidence 579999999999999999999999999999999999999986 69999987778999999999999976 32
Q ss_pred ----CCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 72 ----QVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 72 ----~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++.+++..+++..+...|+++||++|.||+++
T Consensus 129 ~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~ 165 (189)
T cd04134 129 YGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEA 165 (189)
T ss_pred ccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHH
Confidence 477888999999888667899999999999987
No 38
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.91 E-value=4.5e-24 Score=154.99 Aligned_cols=102 Identities=29% Similarity=0.514 Sum_probs=96.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCC-CCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~-~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
|+|||++|++.|..++..+++++|++|+|||+++++||+.+..|++.+....+ ++|++|||||+|+.+ .+.|+.++++
T Consensus 50 l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~-~~~v~~~~~~ 128 (162)
T PF00071_consen 50 LEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD-EREVSVEEAQ 128 (162)
T ss_dssp EEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG-GSSSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccc-cccchhhHHH
Confidence 57999999999999999999999999999999999999999999999999986 799999999999988 8999999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++++++ ..|+++||+++.||.++
T Consensus 129 ~~~~~~~-~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 129 EFAKELG-VPYFEVSAKNGENVKEI 152 (162)
T ss_dssp HHHHHTT-SEEEEEBTTTTTTHHHH
T ss_pred HHHHHhC-CEEEEEECCCCCCHHHH
Confidence 9999999 56889999999999987
No 39
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.91 E-value=4.7e-24 Score=156.72 Aligned_cols=104 Identities=26% Similarity=0.397 Sum_probs=94.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
+++|||+|++.|..+++.+++++|++|+|||+++++||+.+. .|+..+....+++|++|||||+|+..+
T Consensus 48 ~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 127 (174)
T smart00174 48 LGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQ 127 (174)
T ss_pred EEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcc
Confidence 479999999999999999999999999999999999999996 699999887789999999999998651
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.|+.+++.++++..++..|+++||++|.||+++
T Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 163 (174)
T smart00174 128 KQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREV 163 (174)
T ss_pred cCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHH
Confidence 23488999999999999867889999999999987
No 40
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.91 E-value=7.1e-24 Score=154.69 Aligned_cols=102 Identities=27% Similarity=0.480 Sum_probs=94.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||+|++.|..++..+++++|++++|||+++++||+.+..|+..+.... .++|+++||||+|+.+ .+.++.+++.
T Consensus 51 l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~~~~~ 129 (161)
T cd04117 51 IQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ-KRQVGDEQGN 129 (161)
T ss_pred EEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999988776 5799999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++.++++ |++|||++|.||+++
T Consensus 130 ~~~~~~~~~-~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 130 KLAKEYGMD-FFETSACTNSNIKES 153 (161)
T ss_pred HHHHHcCCE-EEEEeCCCCCCHHHH
Confidence 999999864 789999999999976
No 41
>KOG0395|consensus
Probab=99.91 E-value=9.3e-24 Score=159.18 Aligned_cols=102 Identities=25% Similarity=0.374 Sum_probs=96.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
|+|+||+|++.|..|...|++++||+++||+++|+.||+.+..++..|.+.. .++|+++||||+|+.. .|.|+.+++
T Consensus 53 l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~-~R~V~~eeg 131 (196)
T KOG0395|consen 53 LEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER-ERQVSEEEG 131 (196)
T ss_pred EEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh-ccccCHHHH
Confidence 4699999999999999999999999999999999999999999999995544 6789999999999998 899999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+|..++++ |+|+||+.+.||+++
T Consensus 132 ~~la~~~~~~-f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 132 KALARSWGCA-FIETSAKLNYNVDEV 156 (196)
T ss_pred HHHHHhcCCc-EEEeeccCCcCHHHH
Confidence 9999999998 999999999999987
No 42
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.91 E-value=1.7e-23 Score=151.83 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=93.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||+++|..+++.|++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ .+.++.+++
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~ 129 (163)
T cd04136 51 LEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED-ERVVSREEG 129 (163)
T ss_pred EEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceecHHHH
Confidence 4689999999999999999999999999999999999999999999987764 6899999999999987 678888899
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.++. .|+++||++|.||.++
T Consensus 130 ~~~~~~~~~-~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 130 QALARQWGC-PFYETSAKSKINVDEV 154 (163)
T ss_pred HHHHHHcCC-eEEEecCCCCCCHHHH
Confidence 999998885 5789999999999976
No 43
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.90 E-value=2.2e-23 Score=156.12 Aligned_cols=102 Identities=21% Similarity=0.309 Sum_probs=93.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEGTTPQVTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~~~~~v~~~ 76 (170)
++||||+|+++|..++..|++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++..
T Consensus 49 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~-~~~v~~~ 127 (190)
T cd04144 49 LEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY-EREVSTE 127 (190)
T ss_pred EEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc-cCccCHH
Confidence 4789999999999999999999999999999999999999999998887653 5799999999999987 7889999
Q ss_pred HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++..+++.+++ .|+++||++|.||+++
T Consensus 128 ~~~~~~~~~~~-~~~e~SAk~~~~v~~l 154 (190)
T cd04144 128 EGAALARRLGC-EFIEASAKTNVNVERA 154 (190)
T ss_pred HHHHHHHHhCC-EEEEecCCCCCCHHHH
Confidence 99999999987 4789999999999976
No 44
>PTZ00369 Ras-like protein; Provisional
Probab=99.90 E-value=3.8e-23 Score=154.70 Aligned_cols=102 Identities=22% Similarity=0.365 Sum_probs=93.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||+|++.|..++..|++++|++++|||+++++||+.+..|+..+.+.. +++|+++||||+|+.+ .+.++.+++
T Consensus 55 l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~i~~~~~ 133 (189)
T PTZ00369 55 LDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS-ERQVSTGEG 133 (189)
T ss_pred EEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHH
Confidence 4689999999999999999999999999999999999999999999987765 5899999999999987 788999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.++.+ |+++||++|.||.++
T Consensus 134 ~~~~~~~~~~-~~e~Sak~~~gi~~~ 158 (189)
T PTZ00369 134 QELAKSFGIP-FLETSAKQRVNVDEA 158 (189)
T ss_pred HHHHHHhCCE-EEEeeCCCCCCHHHH
Confidence 9999988874 779999999999976
No 45
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.90 E-value=2.8e-23 Score=151.85 Aligned_cols=102 Identities=31% Similarity=0.515 Sum_probs=94.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++|||+|++.|..++..+++++|++++|||+++++||+.+..|+..+.... +++|+++||||+|+.. .+.++.+++.
T Consensus 52 ~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~ 130 (165)
T cd01865 52 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED-ERVVSSERGR 130 (165)
T ss_pred EEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999998776 6899999999999987 7788889999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++++.++.+ |+++||++|.|+.+.
T Consensus 131 ~~~~~~~~~-~~~~Sa~~~~gv~~l 154 (165)
T cd01865 131 QLADQLGFE-FFEASAKENINVKQV 154 (165)
T ss_pred HHHHHcCCE-EEEEECCCCCCHHHH
Confidence 999988885 778999999999976
No 46
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.90 E-value=4.1e-23 Score=153.67 Aligned_cols=104 Identities=22% Similarity=0.382 Sum_probs=93.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC---CCCCCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---TPQVTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---~~~v~~~ 76 (170)
++||||||++.|..+++.+++++|++++|||++++.||+.+. .|+..+....+++|+++||||+|+... .+.++.+
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~ 130 (187)
T cd04132 51 LALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPA 130 (187)
T ss_pred EEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHH
Confidence 479999999999999999999999999999999999999996 599888776688999999999998652 2468889
Q ss_pred HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++.+++..++...|+++||++|.||.++
T Consensus 131 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 131 QAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred HHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999867889999999999987
No 47
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.90 E-value=2.9e-23 Score=159.08 Aligned_cols=101 Identities=22% Similarity=0.454 Sum_probs=90.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
++||||+|++.|..++..||+++|++|+|||++++.||+.+..|+..+....+++|++|||||+|+.. +.++.+++ .
T Consensus 64 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~--~~v~~~~~-~ 140 (219)
T PLN03071 64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--RQVKAKQV-T 140 (219)
T ss_pred EEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh--ccCCHHHH-H
Confidence 57999999999999999999999999999999999999999999999988778999999999999964 56666666 7
Q ss_pred HHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
+++..+++ |++|||++|.||.++|
T Consensus 141 ~~~~~~~~-~~e~SAk~~~~i~~~f 164 (219)
T PLN03071 141 FHRKKNLQ-YYEISAKSNYNFEKPF 164 (219)
T ss_pred HHHhcCCE-EEEcCCCCCCCHHHHH
Confidence 77777764 7789999999999873
No 48
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.90 E-value=3.4e-23 Score=150.91 Aligned_cols=102 Identities=25% Similarity=0.374 Sum_probs=93.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++.|..+++.+++++|++++|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~ 129 (164)
T cd04175 51 LEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQG 129 (164)
T ss_pred EEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh-ccEEcHHHH
Confidence 4699999999999999999999999999999999999999999999987654 7899999999999987 778888889
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.+++ .|+++||++|.|+.++
T Consensus 130 ~~~~~~~~~-~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 130 QNLARQWGC-AFLETSAKAKINVNEI 154 (164)
T ss_pred HHHHHHhCC-EEEEeeCCCCCCHHHH
Confidence 999988886 5779999999999986
No 49
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.90 E-value=3.3e-23 Score=152.60 Aligned_cols=104 Identities=22% Similarity=0.350 Sum_probs=94.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
+++|||||++.|..+++.+++++|++|+|||++++.||+.+. .|+..+....+++|+++||||+|+...
T Consensus 50 ~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 129 (173)
T cd04130 50 LQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARY 129 (173)
T ss_pred EEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhc
Confidence 478999999999999999999999999999999999999985 799888876678999999999998641
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.|+.+++..+++..+...|+++||++|.||+++
T Consensus 130 ~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~l 165 (173)
T cd04130 130 GEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEV 165 (173)
T ss_pred CCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 46889999999999999978999999999999987
No 50
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.90 E-value=3.1e-23 Score=151.28 Aligned_cols=100 Identities=18% Similarity=0.328 Sum_probs=87.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC-CCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG-TTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~-~~~~v~~~~ 77 (170)
++||||+|++. ..|++++|++++|||++++.||+.+..|++++..+. +++|++|||||+|+.. ..+.|+.++
T Consensus 49 l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~ 123 (158)
T cd04103 49 LLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDAR 123 (158)
T ss_pred EEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHH
Confidence 47999999975 457899999999999999999999999999998775 6799999999999853 268899999
Q ss_pred HHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
+.+++++.+...|++|||++|.||+++|
T Consensus 124 ~~~~~~~~~~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 124 ARQLCADMKRCSYYETCATYGLNVERVF 151 (158)
T ss_pred HHHHHHHhCCCcEEEEecCCCCCHHHHH
Confidence 9999988764568899999999999873
No 51
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.90 E-value=4.4e-23 Score=150.04 Aligned_cols=102 Identities=29% Similarity=0.382 Sum_probs=93.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||+|+++|..+++.|++++|++++|||++++.||+.+..|+..+.+.. .++|+++||||+|+.. .+.++..++
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~-~~~~~~~~~ 129 (163)
T cd04176 51 LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES-EREVSSAEG 129 (163)
T ss_pred EEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cCccCHHHH
Confidence 4689999999999999999999999999999999999999999999887764 6899999999999977 678888889
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++..+. .|+++||+++.|+.++
T Consensus 130 ~~~~~~~~~-~~~~~Sa~~~~~v~~l 154 (163)
T cd04176 130 RALAEEWGC-PFMETSAKSKTMVNEL 154 (163)
T ss_pred HHHHHHhCC-EEEEecCCCCCCHHHH
Confidence 999988887 5779999999999977
No 52
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.90 E-value=6.6e-23 Score=156.47 Aligned_cols=102 Identities=24% Similarity=0.304 Sum_probs=93.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEGTTPQVTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~~~~~v~~~ 76 (170)
++||||+|++.|..+++.|++++|++|+|||+++++||+.+..|+..+.+.. .++|+++||||+|+.+ .+.++.+
T Consensus 52 ~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~-~~~v~~~ 130 (215)
T cd04109 52 LQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH-NRTVKDD 130 (215)
T ss_pred EEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc-ccccCHH
Confidence 4799999999999999999999999999999999999999999999988765 3578999999999987 7899999
Q ss_pred HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++..+++.++++ ++++||++|.||++.
T Consensus 131 ~~~~~~~~~~~~-~~~iSAktg~gv~~l 157 (215)
T cd04109 131 KHARFAQANGME-SCLVSAKTGDRVNLL 157 (215)
T ss_pred HHHHHHHHcCCE-EEEEECCCCCCHHHH
Confidence 999999999874 668999999999987
No 53
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=5e-23 Score=150.28 Aligned_cols=103 Identities=32% Similarity=0.515 Sum_probs=96.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.. .+.+..+++.
T Consensus 54 l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~ 132 (165)
T cd01864 54 LQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE-QREVLFEEAC 132 (165)
T ss_pred EEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999998765 6899999999999987 7788999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++.++...++++||++|.|++++
T Consensus 133 ~~~~~~~~~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 133 TLAEKNGMLAVLETSAKESQNVEEA 157 (165)
T ss_pred HHHHHcCCcEEEEEECCCCCCHHHH
Confidence 9999999888899999999999976
No 54
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.90 E-value=5.3e-23 Score=149.19 Aligned_cols=102 Identities=28% Similarity=0.403 Sum_probs=94.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
++||||||++.|..++..+++++|++++|||+++++||+.+..|+..+....+++|+++||||+|+.. .+.++.+++..
T Consensus 53 ~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~v~~~~~~~ 131 (162)
T cd04106 53 LMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLD-QAVITNEEAEA 131 (162)
T ss_pred EEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccc-ccCCCHHHHHH
Confidence 47999999999999999999999999999999999999999999999887778999999999999987 77889999999
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++..+++ |+++||++|.|+++.
T Consensus 132 ~~~~~~~~-~~~~Sa~~~~~v~~l 154 (162)
T cd04106 132 LAKRLQLP-LFRTSVKDDFNVTEL 154 (162)
T ss_pred HHHHcCCe-EEEEECCCCCCHHHH
Confidence 99999985 778999999999976
No 55
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.89 E-value=1.1e-22 Score=149.00 Aligned_cols=102 Identities=31% Similarity=0.493 Sum_probs=94.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++|||+|++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ .+.+..+++.
T Consensus 54 l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~ 132 (167)
T cd01867 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE-KRVVSKEEGE 132 (167)
T ss_pred EEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999998765 6899999999999987 7888999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++..++.+ |+++||++|.||+++
T Consensus 133 ~~~~~~~~~-~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 133 ALADEYGIK-FLETSAKANINVEEA 156 (167)
T ss_pred HHHHHcCCE-EEEEeCCCCCCHHHH
Confidence 999998885 789999999999976
No 56
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=1e-22 Score=155.12 Aligned_cols=103 Identities=34% Similarity=0.486 Sum_probs=94.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
|++|||+|++.|..++..+++++|++++|||+++++||+.+..|+.++.... ..+|++|||||+|+.. .+.++.+++
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~-~~~v~~~~~ 132 (211)
T cd04111 54 LQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES-QRQVTREEA 132 (211)
T ss_pred EEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc-ccccCHHHH
Confidence 5799999999999999999999999999999999999999999999988765 4688999999999987 788999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
..+++.+++ .|+++||++|.||++++
T Consensus 133 ~~~~~~~~~-~~~e~Sak~g~~v~e~f 158 (211)
T cd04111 133 EKLAKDLGM-KYIETSARTGDNVEEAF 158 (211)
T ss_pred HHHHHHhCC-EEEEEeCCCCCCHHHHH
Confidence 999999995 58899999999999873
No 57
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.89 E-value=1.5e-22 Score=147.80 Aligned_cols=102 Identities=36% Similarity=0.555 Sum_probs=94.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++|||||+++|..++..+++++|++++|||+++++||..+..|+..+.... ++.|+++||||+|+.. .+.++.+++.
T Consensus 53 ~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~ 131 (166)
T cd01869 53 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD-KRVVDYSEAQ 131 (166)
T ss_pred EEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc-ccCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999998776 6899999999999987 7789999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++.++++ |+++||++|.||++.
T Consensus 132 ~~~~~~~~~-~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 132 EFADELGIP-FLETSAKNATNVEQA 155 (166)
T ss_pred HHHHHcCCe-EEEEECCCCcCHHHH
Confidence 999998885 778999999999976
No 58
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.89 E-value=1.4e-22 Score=148.45 Aligned_cols=102 Identities=27% Similarity=0.529 Sum_probs=93.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE 75 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~ 75 (170)
++||||||+++|..++..+++++|++++|||+++++||+.+..|+.++.... +++|++|||||+|+. .+.++.
T Consensus 56 l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~ 133 (170)
T cd04116 56 LQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP--ERQVST 133 (170)
T ss_pred EEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc--ccccCH
Confidence 4799999999999999999999999999999999999999999999887654 468999999999986 468889
Q ss_pred HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++++++++++...|+++||++|.|+.++
T Consensus 134 ~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 134 EEAQAWCRENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred HHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence 99999999999777899999999999976
No 59
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.89 E-value=1.8e-22 Score=150.55 Aligned_cols=102 Identities=14% Similarity=0.230 Sum_probs=87.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCC----CCCCCH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGT----TPQVTE 75 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~----~~~v~~ 75 (170)
|+||||+|++.|..+++.+++++|++++|||++++.||+.+..|+..+.+.. ..+| ++||||+|+..+ .+.+..
T Consensus 51 l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~ 129 (182)
T cd04128 51 FSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEIT 129 (182)
T ss_pred EEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhH
Confidence 5799999999999999999999999999999999999999999999998765 4567 688999998521 122234
Q ss_pred HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++++++++..++ .|+++||++|.||++.
T Consensus 130 ~~~~~~a~~~~~-~~~e~SAk~g~~v~~l 157 (182)
T cd04128 130 KQARKYAKAMKA-PLIFCSTSHSINVQKI 157 (182)
T ss_pred HHHHHHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 678889999996 5778999999999987
No 60
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.89 E-value=1.5e-22 Score=147.88 Aligned_cols=102 Identities=23% Similarity=0.245 Sum_probs=92.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEGTTPQVTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~~~~~v~~~ 76 (170)
+++|||+|+++|..++..+++++|++++|||+++++||+.+..|+..+.+.. +++|++|||||+|+.. .+.+..+
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~ 129 (165)
T cd04140 51 LQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH-KREVSSN 129 (165)
T ss_pred EEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc-cCeecHH
Confidence 4799999999999999999999999999999999999999999988776643 6799999999999987 6789999
Q ss_pred HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++..++..+++ .|+++||++|.||.+.
T Consensus 130 ~~~~~~~~~~~-~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 130 EGAACATEWNC-AFMETSAKTNHNVQEL 156 (165)
T ss_pred HHHHHHHHhCC-cEEEeecCCCCCHHHH
Confidence 99999998887 4789999999999976
No 61
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.89 E-value=3.2e-22 Score=150.93 Aligned_cols=102 Identities=30% Similarity=0.431 Sum_probs=94.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
++||||||++.|..++..++++++++++|||+++++||+.+..|+..+....+++|++|||||+|+.. .+.++.+++..
T Consensus 57 l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~-~~~~~~~~~~~ 135 (199)
T cd04110 57 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE-RKVVETEDAYK 135 (199)
T ss_pred EEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc-ccccCHHHHHH
Confidence 46999999999999999999999999999999999999999999999988778899999999999987 77889999999
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++..+.+ |+++||++|.||.+.
T Consensus 136 ~~~~~~~~-~~e~Sa~~~~gi~~l 158 (199)
T cd04110 136 FAGQMGIS-LFETSAKENINVEEM 158 (199)
T ss_pred HHHHcCCE-EEEEECCCCcCHHHH
Confidence 99988864 779999999999987
No 62
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=3.7e-22 Score=148.98 Aligned_cols=102 Identities=33% Similarity=0.472 Sum_probs=94.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++|||+|++.|..++..+++++|++++|||+++++||..+..|+.++.... .++|+++||||+|+.+ .+.++.+++.
T Consensus 51 ~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~-~~~v~~~~~~ 129 (188)
T cd04125 51 LQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN-NKVVDSNIAK 129 (188)
T ss_pred EEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc-cccCCHHHHH
Confidence 4799999999999999999999999999999999999999999999998776 5799999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++..++ .|+++||++|.|++++
T Consensus 130 ~~~~~~~~-~~~evSa~~~~~i~~~ 153 (188)
T cd04125 130 SFCDSLNI-PFFETSAKQSINVEEA 153 (188)
T ss_pred HHHHHcCC-eEEEEeCCCCCCHHHH
Confidence 99998888 5779999999999987
No 63
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=3.3e-22 Score=149.79 Aligned_cols=102 Identities=36% Similarity=0.544 Sum_probs=94.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||+++|..++..+++++|++|+|||++++.||+++..|+..+.... .++|+++||||+|+.. .+.++.+++.
T Consensus 52 ~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~ 130 (191)
T cd04112 52 LQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG-ERVVKREDGE 130 (191)
T ss_pred EEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999998876 5899999999999987 6888999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++.++. .|+++||++|.||.++
T Consensus 131 ~l~~~~~~-~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 131 RLAKEYGV-PFMETSAKTGLNVELA 154 (191)
T ss_pred HHHHHcCC-eEEEEeCCCCCCHHHH
Confidence 99999887 4789999999999976
No 64
>PLN03110 Rab GTPase; Provisional
Probab=99.88 E-value=4.1e-22 Score=152.31 Aligned_cols=102 Identities=34% Similarity=0.522 Sum_probs=94.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||+|+++|..++..++++++++|+|||++++.||+.+..|+..+.... .++|+++||||+|+.. .+.++.+++.
T Consensus 63 l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~ 141 (216)
T PLN03110 63 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH-LRSVAEEDGQ 141 (216)
T ss_pred EEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc-ccCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999988776 5899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++..+++ .|+++||++|.|++++
T Consensus 142 ~l~~~~~~-~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 142 ALAEKEGL-SFLETSALEATNVEKA 165 (216)
T ss_pred HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 99998877 4778999999999987
No 65
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.88 E-value=4.2e-22 Score=146.83 Aligned_cols=102 Identities=31% Similarity=0.489 Sum_probs=89.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCC--CCCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTP--QVTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~--~v~~~ 76 (170)
++||||+|+++|..++..+++++|++++|||+++++||+.+..|+..+.+.. .++|+++||||+|+.. .+ .+..+
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~-~~~~~~~~~ 129 (170)
T cd04108 51 LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS-PAQYALMEQ 129 (170)
T ss_pred EEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc-cccccccHH
Confidence 5799999999999999999999999999999999999999999999987654 4588999999999965 33 34677
Q ss_pred HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++..+++.++.+ |+++||++|.||+++
T Consensus 130 ~~~~~~~~~~~~-~~e~Sa~~g~~v~~l 156 (170)
T cd04108 130 DAIKLAAEMQAE-YWSVSALSGENVREF 156 (170)
T ss_pred HHHHHHHHcCCe-EEEEECCCCCCHHHH
Confidence 888899888875 678999999999977
No 66
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.88 E-value=4.2e-22 Score=144.62 Aligned_cols=102 Identities=23% Similarity=0.392 Sum_probs=93.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.+.. .++|++|||||+|+.. .+.++.+++
T Consensus 52 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~ 130 (164)
T cd04145 52 LDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH-QRKVSREEG 130 (164)
T ss_pred EEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc-cceecHHHH
Confidence 4689999999999999999999999999999999999999999999887654 6899999999999987 678888899
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++++..++ .|+++||++|.||.++
T Consensus 131 ~~~~~~~~~-~~~~~Sa~~~~~i~~l 155 (164)
T cd04145 131 QELARKLKI-PYIETSAKDRLNVDKA 155 (164)
T ss_pred HHHHHHcCC-cEEEeeCCCCCCHHHH
Confidence 999998887 4679999999999976
No 67
>PLN03108 Rab family protein; Provisional
Probab=99.88 E-value=6.9e-22 Score=150.42 Aligned_cols=102 Identities=35% Similarity=0.506 Sum_probs=94.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++|||+|++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ .+.++.++++
T Consensus 57 l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~ 135 (210)
T PLN03108 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-RRAVSTEEGE 135 (210)
T ss_pred EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999887665 6899999999999988 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++++.+++ .|+++||+++.||.++
T Consensus 136 ~~~~~~~~-~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 136 QFAKEHGL-IFMEASAKTAQNVEEA 159 (210)
T ss_pred HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 99999987 5789999999999988
No 68
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.88 E-value=6.3e-22 Score=145.12 Aligned_cols=102 Identities=34% Similarity=0.508 Sum_probs=94.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||+|+++|..++..+++++|++++|||++++.||+.+..|+.++..+. +++|++|||||.|+.. .+.++.+++.
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~~~~~~~~ 133 (168)
T cd01866 55 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES-RREVSYEEGE 133 (168)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999998775 7899999999999987 6789999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++...++ .|+++||+++.|++++
T Consensus 134 ~~~~~~~~-~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 134 AFAKEHGL-IFMETSAKTASNVEEA 157 (168)
T ss_pred HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 99999887 4789999999999987
No 69
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.88 E-value=4.8e-22 Score=144.82 Aligned_cols=102 Identities=34% Similarity=0.524 Sum_probs=93.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++|||||++.|..+++.++++++++++|||++++.||+.+..|+..+.... .++|++|||||+|+.. .+.+..++..
T Consensus 54 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~-~~~~~~~~~~ 132 (165)
T cd01868 54 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTEEAK 132 (165)
T ss_pred EEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cccCCHHHHH
Confidence 4799999999999999999999999999999999999999999999998877 4699999999999987 7888999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++...++ .|+++||++|.|+.+.
T Consensus 133 ~~~~~~~~-~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 133 AFAEKNGL-SFIETSALDGTNVEEA 156 (165)
T ss_pred HHHHHcCC-EEEEEECCCCCCHHHH
Confidence 99998876 5789999999999976
No 70
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.88 E-value=5.8e-22 Score=145.59 Aligned_cols=102 Identities=30% Similarity=0.446 Sum_probs=91.2
Q ss_pred CeEEecCCccccc-cchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVA-SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~-~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
++||||+|++.|. .+++.+++++|++++|||++++.||..+..|+..+.... .++|+++||||+|+.+ .+.++.++
T Consensus 53 ~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~ 131 (170)
T cd04115 53 VQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE-QIQVPTDL 131 (170)
T ss_pred EEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh-hcCCCHHH
Confidence 4799999999986 589999999999999999999999999999999988765 6899999999999988 78899999
Q ss_pred HHHHHHhcCCCeEEEcccCC---cchhhhH
Q psy17235 78 MENFWSRRSSRRFKPQEVVE---PQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~---~~~v~~~ 104 (170)
+.++++..+++ |+++||++ +.++.++
T Consensus 132 ~~~~~~~~~~~-~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 132 AQRFADAHSMP-LFETSAKDPSENDHVEAI 160 (170)
T ss_pred HHHHHHHcCCc-EEEEeccCCcCCCCHHHH
Confidence 99999998865 67899999 6666654
No 71
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.88 E-value=6.2e-22 Score=145.40 Aligned_cols=104 Identities=21% Similarity=0.341 Sum_probs=93.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
+++|||+|++.|..+++.+++++|++++|||++++.||+.+. .|++.+....+++|+++||||+|+.++
T Consensus 50 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~ 129 (174)
T cd04135 50 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDM 129 (174)
T ss_pred EEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhc
Confidence 468999999999999999999999999999999999999995 688888766688999999999998652
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.++.+++..+++..++..|++|||++|.||+++
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~ 165 (174)
T cd04135 130 KEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTV 165 (174)
T ss_pred cCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHH
Confidence 24788999999999999877999999999999976
No 72
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.88 E-value=5.7e-22 Score=143.90 Aligned_cols=102 Identities=36% Similarity=0.541 Sum_probs=94.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
|++|||||++.|..++..+++++|++++|||++++.||..+..|+..+.... +++|++|||||+|+.. .+.++.+++.
T Consensus 51 l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~ 129 (161)
T cd04113 51 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD-QREVTFLEAS 129 (161)
T ss_pred EEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch-hccCCHHHHH
Confidence 5799999999999999999999999999999999999999999999887665 7899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++..++ .|+++||+++.|+.+.
T Consensus 130 ~~~~~~~~-~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 130 RFAQENGL-LFLETSALTGENVEEA 153 (161)
T ss_pred HHHHHcCC-EEEEEECCCCCCHHHH
Confidence 99999995 6889999999999976
No 73
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.88 E-value=8.3e-22 Score=144.58 Aligned_cols=100 Identities=21% Similarity=0.461 Sum_probs=87.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
|++|||+|++.|..++..+++++|++|+|||+++++||..+..|+..+....+++|+++||||+|+.. +.+.. +..+
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~--~~~~~-~~~~ 127 (166)
T cd00877 51 FNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD--RKVKA-KQIT 127 (166)
T ss_pred EEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc--ccCCH-HHHH
Confidence 47999999999999999999999999999999999999999999999988877899999999999974 34443 3456
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++..++ .|+++||++|.||+++
T Consensus 128 ~~~~~~~-~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 128 FHRKKNL-QYYEISAKSNYNFEKP 150 (166)
T ss_pred HHHHcCC-EEEEEeCCCCCChHHH
Confidence 7766554 5779999999999987
No 74
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.88 E-value=1.1e-21 Score=142.70 Aligned_cols=102 Identities=25% Similarity=0.410 Sum_probs=92.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||+++|..++..+++++|++++|||+++++||+.+..|+..+.+.. .+.|+++||||+|+.. .+.++.+++
T Consensus 50 l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~-~~~~~~~~~ 128 (164)
T smart00173 50 LDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES-ERVVSTEEG 128 (164)
T ss_pred EEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceEcHHHH
Confidence 4789999999999999999999999999999999999999999998887654 5799999999999987 678888999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++..+. .|+++||++|.|+++.
T Consensus 129 ~~~~~~~~~-~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 129 KELARQWGC-PFLETSAKERVNVDEA 153 (164)
T ss_pred HHHHHHcCC-EEEEeecCCCCCHHHH
Confidence 999998886 5789999999999976
No 75
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.87 E-value=8.7e-22 Score=143.03 Aligned_cols=102 Identities=22% Similarity=0.380 Sum_probs=93.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC------CCCeEEEEeeCCCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA------ENAKIFLCGNKSDLEGTTPQVT 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~------~~~pvvlvgnK~Dl~~~~~~v~ 74 (170)
++||||+|++.|..+++.+++++|++|+|||++++.||+.+..|+.++.... .+.|+++||||+|+.+ .+.++
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~ 129 (168)
T cd04119 51 VNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK-HRAVS 129 (168)
T ss_pred EEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc-ccccC
Confidence 4799999999999999999999999999999999999999999999998765 3689999999999976 67889
Q ss_pred HHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 75 EADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 75 ~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++..++...+++ |+++||++|.|+.++
T Consensus 130 ~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l 158 (168)
T cd04119 130 EDEGRLWAESKGFK-YFETSACTGEGVNEM 158 (168)
T ss_pred HHHHHHHHHHcCCe-EEEEECCCCCCHHHH
Confidence 99999999998865 779999999999987
No 76
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.87 E-value=1.5e-21 Score=142.98 Aligned_cols=103 Identities=25% Similarity=0.384 Sum_probs=93.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.|..+++.++++++++++|||++++++|+.+..|...+.+.. .++|++++|||.|+.. .+.++.+++
T Consensus 51 ~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~ 129 (168)
T cd04177 51 LEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED-DRQVSREDG 129 (168)
T ss_pred EEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc-cCccCHHHH
Confidence 4799999999999999999999999999999999999999999999887643 6899999999999987 788899999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.++...|+++||+++.||.++
T Consensus 130 ~~~~~~~~~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 130 VSLSQQWGNVPFYETSARKRTNVDEV 155 (168)
T ss_pred HHHHHHcCCceEEEeeCCCCCCHHHH
Confidence 99999988545789999999999976
No 77
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.87 E-value=1.2e-21 Score=142.44 Aligned_cols=102 Identities=25% Similarity=0.375 Sum_probs=93.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
+++|||||++.+..++..+++++|++++|||++++.||+.+..|+..+....+++|+++||||+|+.+ .+.++..++..
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~ 132 (164)
T cd04101 54 LFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD-KAEVTDAQAQA 132 (164)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc-ccCCCHHHHHH
Confidence 46999999999999999999999999999999999999999999999887767899999999999977 67888888888
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++...+++ |+++||+++.|+.+.
T Consensus 133 ~~~~~~~~-~~~~Sa~~~~gi~~l 155 (164)
T cd04101 133 FAQANQLK-FFKTSALRGVGYEEP 155 (164)
T ss_pred HHHHcCCe-EEEEeCCCCCChHHH
Confidence 88888875 778999999999986
No 78
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.87 E-value=1.8e-21 Score=140.64 Aligned_cols=101 Identities=22% Similarity=0.339 Sum_probs=91.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||+|+++|..++..|++++|++++|||++++.||+.+..|+..+.+.. .++|++|||||+|+.. +.+...++
T Consensus 51 ~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~ 128 (162)
T cd04138 51 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVSSRQG 128 (162)
T ss_pred EEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc--ceecHHHH
Confidence 4689999999999999999999999999999999999999999999988765 5899999999999975 57788889
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++..+.+ |+++||++|.|++++
T Consensus 129 ~~~~~~~~~~-~~~~Sa~~~~gi~~l 153 (162)
T cd04138 129 QDLAKSYGIP-YIETSAKTRQGVEEA 153 (162)
T ss_pred HHHHHHhCCe-EEEecCCCCCCHHHH
Confidence 9999888875 778999999999986
No 79
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.87 E-value=1e-21 Score=144.47 Aligned_cols=102 Identities=18% Similarity=0.334 Sum_probs=85.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
|++|||||+++|..+|+.+|+++|++|+|||++++.+|..+..|+.++.... +++|++|||||+|+.+ .++.+++
T Consensus 55 ~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i 131 (168)
T cd04149 55 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD---AMKPHEI 131 (168)
T ss_pred EEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc---CCCHHHH
Confidence 5799999999999999999999999999999999999999998887776532 6899999999999965 4677777
Q ss_pred HHHHHhc---CC-CeEEEcccCCcchhhhHH
Q psy17235 79 ENFWSRR---SS-RRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 79 ~~~a~~~---~~-~~~~e~Sa~~~~~v~~~~ 105 (170)
..+.... +. ..++++||++|.||.+++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~ 162 (168)
T cd04149 132 QEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 162 (168)
T ss_pred HHHcCCCccCCCcEEEEEeeCCCCCChHHHH
Confidence 7765321 11 257899999999999873
No 80
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.86 E-value=5.9e-22 Score=145.16 Aligned_cols=102 Identities=18% Similarity=0.273 Sum_probs=85.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH----H
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE----A 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~----~ 76 (170)
|++|||||++.|..+|..+++++|++++|||.+++.+|..++.|+.++....+++|+++||||+|+.. .+.++. .
T Consensus 46 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~~ 124 (164)
T cd04162 46 MELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA-ARSVQEIHKEL 124 (164)
T ss_pred EEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC-CCCHHHHHHHh
Confidence 57999999999999999999999999999999999999999999998876557899999999999977 554442 2
Q ss_pred HHHHHHHhcCCCeEEEcccCC------cchhhhH
Q psy17235 77 DMENFWSRRSSRRFKPQEVVE------PQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~~~~e~Sa~~------~~~v~~~ 104 (170)
++..++++.++ .|++|||++ ++||+++
T Consensus 125 ~~~~~~~~~~~-~~~~~Sa~~~~s~~~~~~v~~~ 157 (164)
T cd04162 125 ELEPIARGRRW-ILQGTSLDDDGSPSRMEAVKDL 157 (164)
T ss_pred CChhhcCCCce-EEEEeeecCCCChhHHHHHHHH
Confidence 35667776665 467788887 8887766
No 81
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=2.2e-21 Score=144.46 Aligned_cols=98 Identities=15% Similarity=0.336 Sum_probs=81.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++.|..+|..||+++|++|+|||++++++|..+..|+..+.... +++|++|||||+|+++ .++.++
T Consensus 63 ~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~---~~~~~~- 138 (181)
T PLN00223 63 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN---AMNAAE- 138 (181)
T ss_pred EEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC---CCCHHH-
Confidence 5799999999999999999999999999999999999999988888775432 6899999999999976 344444
Q ss_pred HHHHHhcCCC-------eEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSR-------RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~-------~~~e~Sa~~~~~v~~~ 104 (170)
+....++. +++++||++|+||.++
T Consensus 139 --~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~ 169 (181)
T PLN00223 139 --ITDKLGLHSLRQRHWYIQSTCATSGEGLYEG 169 (181)
T ss_pred --HHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence 33334432 4668999999999987
No 82
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.86 E-value=3.7e-21 Score=149.95 Aligned_cols=104 Identities=21% Similarity=0.294 Sum_probs=91.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh----------CCCCeEEEEeeCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY----------AENAKIFLCGNKSDLEGTT 70 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~----------~~~~pvvlvgnK~Dl~~~~ 70 (170)
|+||||+|++.|..++..++.++|++|+|||+++++||+.+..|+.++... ..++|+||||||+|+.. .
T Consensus 50 l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~-~ 128 (247)
T cd04143 50 LDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF-P 128 (247)
T ss_pred EEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh-c
Confidence 479999999999999999999999999999999999999999999998754 15799999999999987 6
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
+.++.+++.+++.......|+++||++|.||++.+
T Consensus 129 ~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf 163 (247)
T cd04143 129 REVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF 163 (247)
T ss_pred cccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 78999999888875544468899999999999873
No 83
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.86 E-value=3.5e-21 Score=140.49 Aligned_cols=102 Identities=25% Similarity=0.323 Sum_probs=89.8
Q ss_pred CeEEecCCcccc-ccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235 1 MQLWDTGGMERV-ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEGTTPQVTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~-~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~~~~~v~~~ 76 (170)
++||||||++.+ ...+..+++++|++|+|||++++.||+.+..|+..+.... .++|+++||||+|+.. .+.++.+
T Consensus 49 ~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~ 127 (165)
T cd04146 49 LEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH-YRQVSTE 127 (165)
T ss_pred EEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH-hCccCHH
Confidence 479999999863 5567889999999999999999999999999998887654 4899999999999977 7889999
Q ss_pred HHHHHHHhcCCCeEEEcccCCc-chhhhH
Q psy17235 77 DMENFWSRRSSRRFKPQEVVEP-QEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~~~~e~Sa~~~-~~v~~~ 104 (170)
++.++++..++ .|+++||+++ .||+++
T Consensus 128 ~~~~~~~~~~~-~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 128 EGEKLASELGC-LFFEVSAAEDYDGVHSV 155 (165)
T ss_pred HHHHHHHHcCC-EEEEeCCCCCchhHHHH
Confidence 99999999996 4779999999 589976
No 84
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.86 E-value=4.8e-21 Score=139.61 Aligned_cols=99 Identities=28% Similarity=0.452 Sum_probs=86.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
+++|||+|++.|..+++.+++++|++|+|||++++.||+.+..|+..+.+..+++|+++||||+|+.. .+ ..+...
T Consensus 51 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~---~~-~~~~~~ 126 (161)
T cd04124 51 VDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDP---SV-TQKKFN 126 (161)
T ss_pred EEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCch---hH-HHHHHH
Confidence 47999999999999999999999999999999999999999999999987777899999999999854 22 345667
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++...+++ ++++||++|.|+++.
T Consensus 127 ~~~~~~~~-~~~~Sa~~~~gv~~l 149 (161)
T cd04124 127 FAEKHNLP-LYYVSAADGTNVVKL 149 (161)
T ss_pred HHHHcCCe-EEEEeCCCCCCHHHH
Confidence 77777765 667999999999976
No 85
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.86 E-value=3.6e-21 Score=145.79 Aligned_cols=102 Identities=21% Similarity=0.290 Sum_probs=86.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-------------------C-CCCeEEEE
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-------------------A-ENAKIFLC 60 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~-------------------~-~~~pvvlv 60 (170)
|+||||+|++.|..+++.||+++|++|+|||+++++||+++..|+.++... . +++|++||
T Consensus 56 l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilV 135 (202)
T cd04102 56 VELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVI 135 (202)
T ss_pred EEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEE
Confidence 579999999999999999999999999999999999999999999998763 1 47999999
Q ss_pred eeCCCCCCCCCCCCHHH----HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 61 GNKSDLEGTTPQVTEAD----MENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 61 gnK~Dl~~~~~~v~~~~----~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
|||+|+.+ .|.++.++ ...+|.+.|++.. +.++.++..+-..
T Consensus 136 GnK~Dl~~-~r~~~~~~~~~~~~~ia~~~~~~~i-~~~c~~~~~~~~~ 181 (202)
T cd04102 136 GTKLDQIP-EKESSGNLVLTARGFVAEQGNAEEI-NLNCTNGRLLAAG 181 (202)
T ss_pred EECccchh-hcccchHHHhhHhhhHHHhcCCceE-EEecCCcccccCC
Confidence 99999987 67777764 5567888999844 5588877666554
No 86
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.86 E-value=7.4e-21 Score=142.29 Aligned_cols=103 Identities=32% Similarity=0.501 Sum_probs=91.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC---CCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT---TPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~---~~~v~~~~ 77 (170)
|+||||+|+++|..++..+++++|++++|||++++.||+.+..|+..+....+++|+++||||+|+... .+.++.++
T Consensus 52 l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~ 131 (193)
T cd04118 52 LGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHD 131 (193)
T ss_pred EEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHH
Confidence 469999999999999999999999999999999999999999999998877678999999999998541 35677788
Q ss_pred HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+..++..++++ ++++||+++.||++.
T Consensus 132 ~~~~~~~~~~~-~~~~Sa~~~~gv~~l 157 (193)
T cd04118 132 VQDFADEIKAQ-HFETSSKTGQNVDEL 157 (193)
T ss_pred HHHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 89999888875 668999999999976
No 87
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.86 E-value=6.4e-21 Score=140.12 Aligned_cols=105 Identities=22% Similarity=0.359 Sum_probs=92.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
+++|||+|++.|..+++.+++++|++++|||+++++||+.+. .|+..+....+++|+++||||+|+...
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~ 130 (175)
T cd01870 51 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKM 130 (175)
T ss_pred EEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhc
Confidence 479999999999999999999999999999999999999985 698888876678999999999998642
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+.++..+++++++..+...|++|||++|.||++++
T Consensus 131 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 167 (175)
T cd01870 131 KQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVF 167 (175)
T ss_pred cCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHH
Confidence 245778899999999988789999999999999873
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.86 E-value=3.1e-21 Score=148.02 Aligned_cols=101 Identities=22% Similarity=0.224 Sum_probs=88.8
Q ss_pred CeEEecCCccccccchhhhcc-CCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYK-FAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~-~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
++||||+|++ ..+...+++ ++|++++|||++++.||+.+..|+..+.... .++|+++||||+|+.. .+.++.++
T Consensus 52 l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~ 128 (221)
T cd04148 52 LVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR-SREVSVQE 128 (221)
T ss_pred EEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc-cceecHHH
Confidence 4799999998 334566777 9999999999999999999999999887765 6899999999999987 78899999
Q ss_pred HHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
+..++...+++ |+++||+++.||++.+
T Consensus 129 ~~~~a~~~~~~-~~e~SA~~~~gv~~l~ 155 (221)
T cd04148 129 GRACAVVFDCK-FIETSAGLQHNVDELL 155 (221)
T ss_pred HHHHHHHcCCe-EEEecCCCCCCHHHHH
Confidence 99999988874 7789999999999873
No 89
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.86 E-value=8e-21 Score=141.86 Aligned_cols=104 Identities=20% Similarity=0.342 Sum_probs=93.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC---------C
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---------T 70 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------~ 70 (170)
+.+|||+|++.|..+++.+++++|++++|||+++++||+.+. .|+..+....+++|+++||||+|+.++ .
T Consensus 51 l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~ 130 (187)
T cd04129 51 LALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQ 130 (187)
T ss_pred EEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccC
Confidence 468999999999888888999999999999999999999996 699999877788999999999998541 3
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+.++.+++..+++.++...|++|||++|.||+++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 164 (187)
T cd04129 131 RFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDV 164 (187)
T ss_pred CcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHH
Confidence 5677889999999999878899999999999977
No 90
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.86 E-value=8e-21 Score=137.72 Aligned_cols=102 Identities=43% Similarity=0.608 Sum_probs=94.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++||+||++.|..++..+++++|++++|||++++.||+.+..|+..+..+. +++|+++|+||+|+.. .+.+..+++.
T Consensus 51 ~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~-~~~~~~~~~~ 129 (164)
T smart00175 51 LQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED-QRQVSREEAE 129 (164)
T ss_pred EEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc-ccCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999988877 7899999999999987 6788999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++..+++ |+++||++|.|++++
T Consensus 130 ~~~~~~~~~-~~e~Sa~~~~~i~~l 153 (164)
T smart00175 130 AFAEEHGLP-FFETSAKTNTNVEEA 153 (164)
T ss_pred HHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 999988886 789999999999976
No 91
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.85 E-value=7.7e-21 Score=139.64 Aligned_cols=101 Identities=18% Similarity=0.344 Sum_probs=87.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.+..+|..+++++|++++|||++++++|..+..|+..+.... .+.|++|||||+|+.+ .++.+++
T Consensus 45 i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~ 121 (169)
T cd04158 45 FTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG---ALSVEEM 121 (169)
T ss_pred EEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc---CCCHHHH
Confidence 4799999999999999999999999999999999999999999998887543 5689999999999965 5788888
Q ss_pred HHHHHhcCC-----CeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSS-----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~-----~~~~e~Sa~~~~~v~~~ 104 (170)
..+++..+. ..|++|||++|.||.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 122 TELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred HHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 888754432 25889999999999987
No 92
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.85 E-value=6.2e-21 Score=138.99 Aligned_cols=101 Identities=15% Similarity=0.341 Sum_probs=80.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH-
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD- 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~- 77 (170)
+++|||||+++|..+|+.||+++|++|+|||++++.||+.+..|+..+.... .++|++|+|||+|+.+ .++.++
T Consensus 46 ~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i 122 (159)
T cd04150 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN---AMSAAEV 122 (159)
T ss_pred EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC---CCCHHHH
Confidence 4799999999999999999999999999999999999999998888775432 5799999999999965 333433
Q ss_pred HHHHHHh---cCCCeEEEcccCCcchhhhH
Q psy17235 78 MENFWSR---RSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~---~~~~~~~e~Sa~~~~~v~~~ 104 (170)
...++.. .....++++||++|.||+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 123 TDKLGLHSLRNRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred HHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence 2333211 01125779999999999987
No 93
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.85 E-value=8.3e-21 Score=140.43 Aligned_cols=101 Identities=19% Similarity=0.374 Sum_probs=81.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.+..+|+.|++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .++.++.
T Consensus 59 l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i 135 (175)
T smart00177 59 FTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD---AMKAAEI 135 (175)
T ss_pred EEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc---CCCHHHH
Confidence 4799999999999999999999999999999999999999999988876442 6799999999999975 3344443
Q ss_pred HHHHHhcC----CCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRS----SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~----~~~~~e~Sa~~~~~v~~~ 104 (170)
........ ..+|+++||++|.||.++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 165 (175)
T smart00177 136 TEKLGLHSIRDRNWYIQPTCATSGDGLYEG 165 (175)
T ss_pred HHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence 33221111 124778999999999987
No 94
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.85 E-value=1.3e-20 Score=142.27 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=84.9
Q ss_pred CeEEecCCcccccc--------chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVAS--------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~--------~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~ 68 (170)
++||||||++.|.. ....+++++|++|+|||+++++||+.+..|+..+.+.. +++|++|||||+|+..
T Consensus 51 l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 51 LHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred EEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 46999999765532 23455889999999999999999999999999887653 6799999999999987
Q ss_pred CCCCCCHHHHHHHHH-hcCCCeEEEcccCCcchhhhH
Q psy17235 69 TTPQVTEADMENFWS-RRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 69 ~~~~v~~~~~~~~a~-~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.++.++++.++. .++++ |+++||++|.||++.
T Consensus 131 -~~~~~~~~~~~~~~~~~~~~-~~e~Sak~g~~v~~l 165 (198)
T cd04142 131 -HRFAPRHVLSVLVRKSWKCG-YLECSAKYNWHILLL 165 (198)
T ss_pred -cccccHHHHHHHHHHhcCCc-EEEecCCCCCCHHHH
Confidence 67888888888765 45664 779999999999976
No 95
>PLN03118 Rab family protein; Provisional
Probab=99.85 E-value=2.1e-20 Score=142.09 Aligned_cols=102 Identities=28% Similarity=0.455 Sum_probs=90.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ-HLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~-~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+.||||||++.|..++..+++++|++|+|||+++++||+.+.. |...+.... .+.|++|||||+|+.. .+.++.++
T Consensus 64 l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~-~~~i~~~~ 142 (211)
T PLN03118 64 LTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES-ERDVSREE 142 (211)
T ss_pred EEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHH
Confidence 4799999999999999999999999999999999999999975 666665443 5789999999999987 77888899
Q ss_pred HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+..++...++ .|+++||+++.|+++.
T Consensus 143 ~~~~~~~~~~-~~~e~SAk~~~~v~~l 168 (211)
T PLN03118 143 GMALAKEHGC-LFLECSAKTRENVEQC 168 (211)
T ss_pred HHHHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 9999998887 4789999999999986
No 96
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.85 E-value=2.2e-20 Score=135.57 Aligned_cols=102 Identities=31% Similarity=0.475 Sum_probs=94.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++||+||+++|..++..+++++|++++|||+++++||..+..|+..+.... +++|+++++||+|+.. .+.++.++..
T Consensus 52 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~ 130 (163)
T cd01860 52 FEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES-KRQVSTEEAQ 130 (163)
T ss_pred EEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cCcCCHHHHH
Confidence 4799999999999999999999999999999999999999999999988776 7899999999999987 6788889999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++...+. .++++||++|.|+.+.
T Consensus 131 ~~~~~~~~-~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 131 EYADENGL-LFFETSAKTGENVNEL 154 (163)
T ss_pred HHHHHcCC-EEEEEECCCCCCHHHH
Confidence 99999886 5889999999999976
No 97
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.84 E-value=3.2e-20 Score=133.98 Aligned_cols=102 Identities=26% Similarity=0.483 Sum_probs=93.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++|||+|++.+..+++.+++++|++++|||++++++|+.+..|+.++.... .++|+++||||+|+.. .+.+..++..
T Consensus 51 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~ 129 (162)
T cd04123 51 LAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER-QRVVSKSEAE 129 (162)
T ss_pred EEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHH
Confidence 4789999999999999999999999999999999999999999999988776 5799999999999987 7788888999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++++..+.+ ++++||+++.|+++.
T Consensus 130 ~~~~~~~~~-~~~~s~~~~~gi~~~ 153 (162)
T cd04123 130 EYAKSVGAK-HFETSAKTGKGIEEL 153 (162)
T ss_pred HHHHHcCCE-EEEEeCCCCCCHHHH
Confidence 999888876 568999999999987
No 98
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=1.3e-20 Score=138.69 Aligned_cols=102 Identities=15% Similarity=0.126 Sum_probs=89.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
+.+||++|++.+..++..||+++|++++|||++++.||+.+..|+..+... .++|+++||||+|+.+ .+.+...+..+
T Consensus 56 l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~-~~~~~~~~~~~ 133 (169)
T cd01892 56 LILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDE-QQQRYEVQPDE 133 (169)
T ss_pred EEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccc-cccccccCHHH
Confidence 468999999999999999999999999999999999999999998876432 4799999999999976 56666667788
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++.+++..++++||+++.|+.+.
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~~v~~l 157 (169)
T cd01892 134 FCRKLGLPPPLHFSSKLGDSSNEL 157 (169)
T ss_pred HHHHcCCCCCEEEEeccCccHHHH
Confidence 898888876788999999999976
No 99
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.84 E-value=3.9e-20 Score=134.00 Aligned_cols=102 Identities=28% Similarity=0.426 Sum_probs=93.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++|||||++.|..++..+++++|++++|||+++++||+.+..|+..+.... .++|++++|||+|+.. .+.++.++..
T Consensus 51 l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~-~~~~~~~~~~ 129 (161)
T cd01861 51 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD-KRQVSTEEGE 129 (161)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc-cCccCHHHHH
Confidence 4799999999999999999999999999999999999999999999987665 4799999999999976 6788989999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++..+++ ++++||+++.|+++.
T Consensus 130 ~~~~~~~~~-~~~~Sa~~~~~v~~l 153 (161)
T cd01861 130 KKAKELNAM-FIETSAKAGHNVKEL 153 (161)
T ss_pred HHHHHhCCE-EEEEeCCCCCCHHHH
Confidence 999988865 778999999999976
No 100
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.84 E-value=4.9e-20 Score=134.69 Aligned_cols=103 Identities=30% Similarity=0.473 Sum_probs=92.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE 75 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~ 75 (170)
|++||+||++.|..++..+++++|++|+|||++++.+|+.+..|...+.... .++|+++||||+|+.. .+.++.
T Consensus 51 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~ 129 (172)
T cd01862 51 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE-KRQVST 129 (172)
T ss_pred EEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc-ccccCH
Confidence 4699999999999999999999999999999999999999999998876654 3799999999999986 567888
Q ss_pred HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++...+++..+...++++||++|.|+.++
T Consensus 130 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 130 KKAQQWCQSNGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred HHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence 89999999888667889999999999976
No 101
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.83 E-value=3.9e-20 Score=137.80 Aligned_cols=101 Identities=17% Similarity=0.327 Sum_probs=79.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.+..+|+.|++++|++|+|||+++++||..+..|+..+.... .++|++|||||.|+.+ .++.++.
T Consensus 63 ~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i 139 (182)
T PTZ00133 63 FTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN---AMSTTEV 139 (182)
T ss_pred EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC---CCCHHHH
Confidence 4789999999999999999999999999999999999999988887775432 5799999999999865 3444443
Q ss_pred HHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSS----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~----~~~~e~Sa~~~~~v~~~ 104 (170)
........+ .+++++||++|.|++++
T Consensus 140 ~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~ 169 (182)
T PTZ00133 140 TEKLGLHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred HHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence 222211111 24668999999999987
No 102
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.83 E-value=7.8e-20 Score=132.51 Aligned_cols=101 Identities=33% Similarity=0.505 Sum_probs=91.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+..+. +++|+++||||+|+.. +.+..++.
T Consensus 51 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~--~~~~~~~~ 128 (161)
T cd01863 51 LAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN--REVTREEG 128 (161)
T ss_pred EEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc--cccCHHHH
Confidence 4799999999999999999999999999999999999999999999998776 6899999999999974 56778889
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++..+++ |+++||++|.|+.+.
T Consensus 129 ~~~~~~~~~~-~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 129 LKFARKHNML-FIETSAKTRDGVQQA 153 (161)
T ss_pred HHHHHHcCCE-EEEEecCCCCCHHHH
Confidence 9999988875 788999999999976
No 103
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.83 E-value=1.1e-20 Score=138.67 Aligned_cols=103 Identities=19% Similarity=0.294 Sum_probs=83.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCC----C
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQV----T 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v----~ 74 (170)
+++|||||++.+..+|..|++++|++|+|||++++.+|..+..|+..+.... .++|++|||||+|+.+ .+.. .
T Consensus 45 ~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~-~~~~~~i~~ 123 (167)
T cd04161 45 VCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKN-ALLGADVIE 123 (167)
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcC-CCCHHHHHH
Confidence 4799999999999999999999999999999999999999999999987654 6899999999999976 3321 1
Q ss_pred HHHHHHHHHhcCCC-eEEEcccCCc------chhhhH
Q psy17235 75 EADMENFWSRRSSR-RFKPQEVVEP------QEVVEA 104 (170)
Q Consensus 75 ~~~~~~~a~~~~~~-~~~e~Sa~~~------~~v~~~ 104 (170)
...+..++++.+.+ ++++|||++| .|+.++
T Consensus 124 ~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 124 YLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred hcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 11223445444443 6777999998 889987
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.83 E-value=9e-20 Score=133.42 Aligned_cols=105 Identities=20% Similarity=0.167 Sum_probs=85.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC--CHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTTPQV--TEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v--~~~~ 77 (170)
+++|||+|++.+...+..+++++|++++|||++++.||+.+. .|++.+....+++|+++||||+|+.+ .+.. ..++
T Consensus 49 ~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~-~~~~~~~~~~ 127 (166)
T cd01893 49 TTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD-GSSQAGLEEE 127 (166)
T ss_pred EEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc-ccchhHHHHH
Confidence 469999999998888888899999999999999999999985 68888877667899999999999976 4432 2334
Q ss_pred HHHHHHhcC-CCeEEEcccCCcchhhhHHH
Q psy17235 78 MENFWSRRS-SRRFKPQEVVEPQEVVEAEQ 106 (170)
Q Consensus 78 ~~~~a~~~~-~~~~~e~Sa~~~~~v~~~~~ 106 (170)
+..++..++ ...|+++||+++.|+++.+.
T Consensus 128 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 128 MLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred HHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 444555443 34688999999999998743
No 105
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.82 E-value=1.6e-19 Score=134.51 Aligned_cols=101 Identities=17% Similarity=0.389 Sum_probs=84.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
|++|||+|++.|..+|+.+++++|++++|||.+++.+++.+..|+.++.... .+.|++||+||+|+.+ .++.++.
T Consensus 54 l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~---~~~~~~~ 130 (183)
T cd04152 54 FHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN---ALSVSEV 130 (183)
T ss_pred EEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc---cCCHHHH
Confidence 4789999999999999999999999999999999999999999998887654 5799999999999865 4556666
Q ss_pred HHHHHhcCC-----CeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSS-----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~-----~~~~e~Sa~~~~~v~~~ 104 (170)
..+....+. ..++++||++|.|+++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 131 EKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred HHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 655532211 24779999999999976
No 106
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.82 E-value=1.3e-19 Score=133.48 Aligned_cols=101 Identities=20% Similarity=0.411 Sum_probs=84.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.+..+|..+++++|++++|||++++.+|..+..|+..+.... .++|++|||||+|+.+ ....+++
T Consensus 60 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~---~~~~~~~ 136 (173)
T cd04154 60 LNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG---ALSEEEI 136 (173)
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc---CCCHHHH
Confidence 4789999999999999999999999999999999999999999988876533 6899999999999965 3355666
Q ss_pred HHHHHhc----CCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRR----SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~----~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+.+.. ....|+++||++|.|+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 137 REALELDKISSHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred HHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence 6655432 1235889999999999976
No 107
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=2.9e-19 Score=130.50 Aligned_cols=102 Identities=35% Similarity=0.546 Sum_probs=91.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++||++|++.|...+..+++.+|++++|||++++.||+.+..|+..+.... .++|+++||||+|+.+ .+.+..+...
T Consensus 58 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~-~~~i~~~~~~ 136 (169)
T cd04114 58 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE-RREVSQQRAE 136 (169)
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHH
Confidence 4689999999999999999999999999999999999999999999887766 5799999999999987 7788888888
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.+... ..++++||++|.|+.++
T Consensus 137 ~~~~~~~-~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 137 EFSDAQD-MYYLETSAKESDNVEKL 160 (169)
T ss_pred HHHHHcC-CeEEEeeCCCCCCHHHH
Confidence 8887776 46889999999999976
No 108
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.81 E-value=2.3e-19 Score=130.96 Aligned_cols=104 Identities=25% Similarity=0.413 Sum_probs=91.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCC---------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTT--------- 70 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~--------- 70 (170)
+++|||||++.|..+++.+++.+|++++|||++++.||.... .|+..+....++.|+++||||+|+....
T Consensus 50 l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 129 (171)
T cd00157 50 LGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKG 129 (171)
T ss_pred EEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccC
Confidence 479999999999999999999999999999999999998774 6888888777889999999999987622
Q ss_pred -CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 71 -PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 -~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..++.+++..++..++...|+++||++|.|+.+.
T Consensus 130 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (171)
T cd00157 130 KEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEV 164 (171)
T ss_pred CCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHH
Confidence 2457888999999999867899999999999976
No 109
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.81 E-value=5.4e-19 Score=133.13 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=87.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||+|++.|..++..++.++|++|+|||++++.+|+.+..|+..+.... .++|++||+||+|+....+.+..++.
T Consensus 49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~ 128 (198)
T cd04147 49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDA 128 (198)
T ss_pred EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHH
Confidence 4789999999999999999999999999999999999999999999888765 57999999999998653466777666
Q ss_pred HHHHH-hcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWS-RRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~-~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.+. ..+. .|+++||++|.|+.+.
T Consensus 129 ~~~~~~~~~~-~~~~~Sa~~g~gv~~l 154 (198)
T cd04147 129 LSTVELDWNC-GFVETSAKDNENVLEV 154 (198)
T ss_pred HHHHHhhcCC-cEEEecCCCCCCHHHH
Confidence 65554 3344 4778999999999987
No 110
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.80 E-value=8.1e-19 Score=127.02 Aligned_cols=102 Identities=28% Similarity=0.432 Sum_probs=92.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||+|++.|..++..+++++|++++|||++++.||..+..|+..+.... .++|+++|+||+|+.. .+.+...+.
T Consensus 50 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~-~~~~~~~~~ 128 (164)
T cd04139 50 LNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED-KRQVSSEEA 128 (164)
T ss_pred EEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc-ccccCHHHH
Confidence 4789999999999999999999999999999999999999999999888764 6899999999999976 567788888
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.++.+ ++++||+++.|+.+.
T Consensus 129 ~~~~~~~~~~-~~~~Sa~~~~gi~~l 153 (164)
T cd04139 129 ANLARQWGVP-YVETSAKTRQNVEKA 153 (164)
T ss_pred HHHHHHhCCe-EEEeeCCCCCCHHHH
Confidence 8899988874 778999999999976
No 111
>PLN00023 GTP-binding protein; Provisional
Probab=99.80 E-value=2e-19 Score=143.83 Aligned_cols=87 Identities=20% Similarity=0.304 Sum_probs=77.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-------------CCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-------------ENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-------------~~~pvvlvgnK~Dl~ 67 (170)
++||||+|++.|..+++.||+++||+|+|||++++.||+++..|+.++.... .++|++|||||+||.
T Consensus 85 LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~ 164 (334)
T PLN00023 85 VELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA 164 (334)
T ss_pred EEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc
Confidence 4799999999999999999999999999999999999999999999998763 258999999999997
Q ss_pred CCC---CC---CCHHHHHHHHHhcCCC
Q psy17235 68 GTT---PQ---VTEADMENFWSRRSSR 88 (170)
Q Consensus 68 ~~~---~~---v~~~~~~~~a~~~~~~ 88 (170)
. . +. +..+++++||+.+|+.
T Consensus 165 ~-~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 165 P-KEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred c-cccccccccccHHHHHHHHHHcCCC
Confidence 5 3 23 3689999999999974
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.80 E-value=1.9e-19 Score=130.30 Aligned_cols=101 Identities=16% Similarity=0.277 Sum_probs=80.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEGTTPQVTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~~~~~v~~~ 76 (170)
+++|||||++.|..+|..+++++|++|+|||++++.+|..+..|+..+.+.. .++|+++||||+|+.+ ....+
T Consensus 47 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~---~~~~~ 123 (162)
T cd04157 47 FTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD---ALTAV 123 (162)
T ss_pred EEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC---CCCHH
Confidence 4799999999999999999999999999999999999999999988876542 5799999999999865 22333
Q ss_pred HHHHHHHh---cCCC-eEEEcccCCcchhhhH
Q psy17235 77 DMENFWSR---RSSR-RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~---~~~~-~~~e~Sa~~~~~v~~~ 104 (170)
+....... .+.+ .++++||++|.|+++.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~ 155 (162)
T cd04157 124 KITQLLGLENIKDKPWHIFASNALTGEGLDEG 155 (162)
T ss_pred HHHHHhCCccccCceEEEEEeeCCCCCchHHH
Confidence 32222111 1112 4789999999999987
No 113
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.79 E-value=6.8e-19 Score=127.41 Aligned_cols=100 Identities=23% Similarity=0.430 Sum_probs=81.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.+..+|..+++++|++++|||.+++.+|..+..|+.++.+.. .++|+++|+||+|+.. .++.++.
T Consensus 46 l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~i 122 (160)
T cd04156 46 LTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG---ALTAEEI 122 (160)
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc---CcCHHHH
Confidence 5799999999999999999999999999999999999999999988876543 6899999999999865 3344443
Q ss_pred HHHH------HhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFW------SRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a------~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.... ...+. .+++|||++|.||+++
T Consensus 123 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 123 TRRFKLKKYCSDRDW-YVQPCSAVTGEGLAEA 153 (160)
T ss_pred HHHcCCcccCCCCcE-EEEecccccCCChHHH
Confidence 3222 11222 4789999999999976
No 114
>KOG4252|consensus
Probab=99.79 E-value=1.5e-19 Score=131.79 Aligned_cols=102 Identities=28% Similarity=0.403 Sum_probs=95.7
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF 81 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~ 81 (170)
.+|||+||++|..+...||++|.+.++||+.||+.||+.+..|++++......+|.|+|-||+|+.+ ..++...+++.+
T Consensus 72 mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlve-ds~~~~~evE~l 150 (246)
T KOG4252|consen 72 MLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVE-DSQMDKGEVEGL 150 (246)
T ss_pred HHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhH-hhhcchHHHHHH
Confidence 5799999999999999999999999999999999999999999999999989999999999999998 889999999999
Q ss_pred HHhcCCCeEEEcccCCcchhhhHH
Q psy17235 82 WSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 82 a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
|+.++.. ++.+|++..-||.++|
T Consensus 151 ak~l~~R-lyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 151 AKKLHKR-LYRTSVKEDFNVMHVF 173 (246)
T ss_pred HHHhhhh-hhhhhhhhhhhhHHHH
Confidence 9999986 4478999999998873
No 115
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.79 E-value=1.9e-18 Score=127.65 Aligned_cols=102 Identities=27% Similarity=0.359 Sum_probs=91.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.|..++..++..++++++|||+++..+|+.+..|+..+.+.. .+.|+++|+||+|+.. .+.++.++.
T Consensus 51 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~ 129 (180)
T cd04137 51 LEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT-QRQVSTEEG 129 (180)
T ss_pred EEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh-cCccCHHHH
Confidence 4789999999999999999999999999999999999999999988887754 5789999999999987 677888888
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.++. .++++||+++.|+.+.
T Consensus 130 ~~~~~~~~~-~~~~~Sa~~~~gv~~l 154 (180)
T cd04137 130 KELAESWGA-AFLESSARENENVEEA 154 (180)
T ss_pred HHHHHHcCC-eEEEEeCCCCCCHHHH
Confidence 888888886 4678999999999976
No 116
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.78 E-value=2.3e-18 Score=124.01 Aligned_cols=102 Identities=25% Similarity=0.385 Sum_probs=92.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++||+||++.+..++..+++++|++++|||+++++|+..+..|+..+.... ..+|+++||||+|+.. .+.++.+++
T Consensus 49 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~ 127 (160)
T cd00876 49 LDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN-ERQVSKEEG 127 (160)
T ss_pred EEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc-cceecHHHH
Confidence 4789999999999999999999999999999999999999999998887766 4899999999999987 678888999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.++. .|+++||+++.|+.+.
T Consensus 128 ~~~~~~~~~-~~~~~S~~~~~~i~~l 152 (160)
T cd00876 128 KALAKEWGC-PFIETSAKDNINIDEV 152 (160)
T ss_pred HHHHHHcCC-cEEEeccCCCCCHHHH
Confidence 999998885 5779999999999976
No 117
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.78 E-value=3e-18 Score=122.55 Aligned_cols=102 Identities=41% Similarity=0.599 Sum_probs=92.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+.+||+||++.+..++..+++++|++++|||++++++++.+..|+..+.... ++.|+++++||+|+.. ...+..++..
T Consensus 51 ~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~ 129 (159)
T cd00154 51 LQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLED-QRQVSTEEAQ 129 (159)
T ss_pred EEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccc-cccccHHHHH
Confidence 4689999999999999999999999999999999999999999999998887 7899999999999975 5678889999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++...+. .++++||+++.|+.+.
T Consensus 130 ~~~~~~~~-~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 130 QFAKENGL-LFFETSAKTGENVEEL 153 (159)
T ss_pred HHHHHcCC-eEEEEecCCCCCHHHH
Confidence 99998776 4778999999999976
No 118
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.78 E-value=2.1e-18 Score=127.28 Aligned_cols=100 Identities=23% Similarity=0.413 Sum_probs=81.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+.+|||||++.|..+|..+++++|++++|||++++++|..+..|+..+.+.. .++|+++++||+|+.+ .++.++.
T Consensus 61 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~---~~~~~~i 137 (174)
T cd04153 61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG---AMTPAEI 137 (174)
T ss_pred EEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC---CCCHHHH
Confidence 4799999999999999999999999999999999999999888888776543 5799999999999865 3444443
Q ss_pred -HHHH----HhcCCCeEEEcccCCcchhhhH
Q psy17235 79 -ENFW----SRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 -~~~a----~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+. +..++ .++++||++|.||+++
T Consensus 138 ~~~l~~~~~~~~~~-~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 138 SESLGLTSIRDHTW-HIQGCCALTGEGLPEG 167 (174)
T ss_pred HHHhCcccccCCce-EEEecccCCCCCHHHH
Confidence 2222 12233 4789999999999987
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.77 E-value=2.7e-18 Score=127.97 Aligned_cols=102 Identities=21% Similarity=0.310 Sum_probs=86.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.+..+|..+++++|++++|||++++.+|.....|+..+.+.. .+.|++++|||+|+.. .++.++.
T Consensus 65 ~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~---~~~~~~~ 141 (190)
T cd00879 65 FKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG---AVSEEEL 141 (190)
T ss_pred EEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC---CcCHHHH
Confidence 4689999999999999999999999999999999999998888988877544 5799999999999854 6777888
Q ss_pred HHHHHhcC---------------CCeEEEcccCCcchhhhHH
Q psy17235 79 ENFWSRRS---------------SRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 79 ~~~a~~~~---------------~~~~~e~Sa~~~~~v~~~~ 105 (170)
+.+.+... ...+++|||++|.||++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~ 183 (190)
T cd00879 142 RQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAF 183 (190)
T ss_pred HHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHH
Confidence 77775421 1248899999999999873
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.77 E-value=4.2e-18 Score=124.10 Aligned_cols=101 Identities=22% Similarity=0.408 Sum_probs=84.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.|..++..+++++|++++|||.+++.++..+..|+..+.+.. .++|+++++||+|+.. .++.++.
T Consensus 52 ~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~---~~~~~~~ 128 (167)
T cd04160 52 LKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD---ALSVEEI 128 (167)
T ss_pred EEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc---CCCHHHH
Confidence 4799999999999999999999999999999999999999999988876653 6899999999999865 4555666
Q ss_pred HHHHHhc----C--CCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRR----S--SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~----~--~~~~~e~Sa~~~~~v~~~ 104 (170)
..+.... + ...++++||++|.|+++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 129 KEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred HHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 6555432 1 125889999999999976
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.76 E-value=6.3e-18 Score=122.52 Aligned_cols=100 Identities=20% Similarity=0.371 Sum_probs=77.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.|..+|..+++++|++++|||.+++.++.....|+..+.+.. .+.|+++|+||+|+.+ .....+.
T Consensus 45 ~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~---~~~~~~i 121 (158)
T cd04151 45 FQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPG---ALSEAEI 121 (158)
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCC---CCCHHHH
Confidence 4799999999999999999999999999999999999988777766554332 5799999999999865 2233332
Q ss_pred HH-HHH----hcCCCeEEEcccCCcchhhhH
Q psy17235 79 EN-FWS----RRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~-~a~----~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.. +.. ..+. .++++||++|.||++.
T Consensus 122 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 151 (158)
T cd04151 122 SEKLGLSELKDRTW-SIFKTSAIKGEGLDEG 151 (158)
T ss_pred HHHhCccccCCCcE-EEEEeeccCCCCHHHH
Confidence 22 211 1112 4889999999999976
No 122
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.76 E-value=1e-17 Score=127.57 Aligned_cols=100 Identities=23% Similarity=0.448 Sum_probs=87.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
+++|||+|++.|..++..++++++++++|||++++.||..+..|+..+....+++|++++|||+|+.+ +.+..+. ..
T Consensus 60 i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~--~~~~~~~-~~ 136 (215)
T PTZ00132 60 FNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD--RQVKARQ-IT 136 (215)
T ss_pred EEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc--ccCCHHH-HH
Confidence 47899999999999999999999999999999999999999999999987778899999999999865 3454444 45
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++..++ .|+++||++|.|+++.
T Consensus 137 ~~~~~~~-~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 137 FHRKKNL-QYYDISAKSNYNFEKP 159 (215)
T ss_pred HHHHcCC-EEEEEeCCCCCCHHHH
Confidence 7777776 5789999999999987
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.75 E-value=1.1e-17 Score=120.91 Aligned_cols=101 Identities=17% Similarity=0.384 Sum_probs=82.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+.+||+||++.|..++..+++++|++++|||++++.+|..+..|+..+.... ++.|+++++||+|+.. . .+.++.
T Consensus 45 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~--~~~~~~ 121 (158)
T cd00878 45 FTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG-A--LSVSEL 121 (158)
T ss_pred EEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc-c--cCHHHH
Confidence 4799999999999999999999999999999999999999999988876654 6899999999999876 2 244444
Q ss_pred HHHHHhc----CCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRR----SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~----~~~~~~e~Sa~~~~~v~~~ 104 (170)
....... ....++++||++|.|+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 151 (158)
T cd00878 122 IEKLGLEKILGRRWHIQPCSAVTGDGLDEG 151 (158)
T ss_pred HHhhChhhccCCcEEEEEeeCCCCCCHHHH
Confidence 4433321 1235889999999999976
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.75 E-value=7.3e-18 Score=125.65 Aligned_cols=101 Identities=14% Similarity=0.185 Sum_probs=84.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+.+|||||++.+..+|..|++++|++++|+|.+++.+|.....|+.++.+.. .+.|+++|+||+|+.. .++.++.
T Consensus 63 ~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~---~~~~~~i 139 (184)
T smart00178 63 FTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY---AASEDEL 139 (184)
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CCCHHHH
Confidence 4689999999999999999999999999999999999999998888876543 6899999999999864 5677776
Q ss_pred HHHHHhc-----------CCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRR-----------SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~-----------~~~~~~e~Sa~~~~~v~~~ 104 (170)
.....-. +...+++|||+++.|++++
T Consensus 140 ~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~ 176 (184)
T smart00178 140 RYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEG 176 (184)
T ss_pred HHHcCCCcccccccccCCceeEEEEeecccCCChHHH
Confidence 5443211 2345899999999999987
No 125
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.74 E-value=6.5e-17 Score=119.81 Aligned_cols=105 Identities=20% Similarity=0.371 Sum_probs=87.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++||.+|+..++.+|+.||.++||+|+|+|.++++.+......+..+.... .++|++|++||+|+++ .++.++.
T Consensus 60 ~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~---~~~~~~i 136 (175)
T PF00025_consen 60 LTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD---AMSEEEI 136 (175)
T ss_dssp EEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT---SSTHHHH
T ss_pred EEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC---cchhhHH
Confidence 4799999999999999999999999999999999999999998888887654 7899999999999876 6777776
Q ss_pred HHHHHhcC-----CCeEEEcccCCcchhhhH-HHHH
Q psy17235 79 ENFWSRRS-----SRRFKPQEVVEPQEVVEA-EQVQ 108 (170)
Q Consensus 79 ~~~a~~~~-----~~~~~e~Sa~~~~~v~~~-~~~~ 108 (170)
.....-.. -...+.|||.+|+|+.++ .|+.
T Consensus 137 ~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~ 172 (175)
T PF00025_consen 137 KEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLI 172 (175)
T ss_dssp HHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHH
T ss_pred HhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHH
Confidence 65443222 224778999999999988 4444
No 126
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.73 E-value=3.3e-17 Score=120.73 Aligned_cols=98 Identities=18% Similarity=0.113 Sum_probs=79.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
++||||||++.|..++..+++++|++|+|||+++..++.....|.... . .++|+++|+||+|+.+ . ...+...+
T Consensus 69 ~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~--~~~~iiiv~NK~Dl~~-~--~~~~~~~~ 142 (179)
T cd01890 69 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E--NNLEIIPVINKIDLPS-A--DPERVKQQ 142 (179)
T ss_pred EEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H--cCCCEEEEEECCCCCc-C--CHHHHHHH
Confidence 469999999999999999999999999999999988887777665432 1 4789999999999864 2 22334556
Q ss_pred HHHhcCCC--eEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSR--RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~--~~~e~Sa~~~~~v~~~ 104 (170)
+++.++++ .++++||++|.|+++.
T Consensus 143 ~~~~~~~~~~~~~~~Sa~~g~gi~~l 168 (179)
T cd01890 143 IEDVLGLDPSEAILVSAKTGLGVEDL 168 (179)
T ss_pred HHHHhCCCcccEEEeeccCCCCHHHH
Confidence 77777764 4889999999999976
No 127
>KOG4423|consensus
Probab=99.72 E-value=4.3e-18 Score=124.70 Aligned_cols=104 Identities=26% Similarity=0.423 Sum_probs=91.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE 75 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~ 75 (170)
+++||++||++|..|...||+.++|..+|||+|+..+|+.+..|.+++..-. ..+|+|+.+||||.......-.+
T Consensus 77 lqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~ 156 (229)
T KOG4423|consen 77 LQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEAT 156 (229)
T ss_pred HHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhH
Confidence 4799999999999999999999999999999999999999999999876443 46889999999998762222235
Q ss_pred HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
....++++++|+..++++|+|.+.|+.|+
T Consensus 157 ~~~d~f~kengf~gwtets~Kenkni~Ea 185 (229)
T KOG4423|consen 157 RQFDNFKKENGFEGWTETSAKENKNIPEA 185 (229)
T ss_pred HHHHHHHhccCccceeeeccccccChhHH
Confidence 77889999999999999999999999987
No 128
>KOG0070|consensus
Probab=99.72 E-value=8.6e-17 Score=117.77 Aligned_cols=101 Identities=20% Similarity=0.397 Sum_probs=85.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
|++||.+||++++.+|++||++++++|+|.|.+|++.+..++..+..+.... .++|+++.+||.|+++ ..+..+.
T Consensus 63 f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~---als~~ei 139 (181)
T KOG0070|consen 63 FTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG---ALSAAEI 139 (181)
T ss_pred EEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc---cCCHHHH
Confidence 5799999999999999999999999999999999999999998888887766 5899999999999987 5665555
Q ss_pred HHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSS----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~----~~~~e~Sa~~~~~v~~~ 104 (170)
.+.-.-..+ .++..|+|.+|+++.++
T Consensus 140 ~~~L~l~~l~~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 140 TNKLGLHSLRSRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred HhHhhhhccCCCCcEEeeccccccccHHHH
Confidence 444433332 46888999999999977
No 129
>KOG0073|consensus
Probab=99.66 E-value=1.2e-15 Score=109.75 Aligned_cols=105 Identities=20% Similarity=0.387 Sum_probs=85.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH-
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD- 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~- 77 (170)
|+|||++||..+++.|+.||..+||+|+|+|++|+..|+.....+..+.... ...|++|++||.|+++ .++.++
T Consensus 62 L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~---~l~~~~i 138 (185)
T KOG0073|consen 62 LNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG---ALSLEEI 138 (185)
T ss_pred EEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc---ccCHHHH
Confidence 5799999999999999999999999999999999999998887777665433 5789999999999975 444443
Q ss_pred -----HHHHHHhcCCCeEEEcccCCcchhhhH-HHHHH
Q psy17235 78 -----MENFWSRRSSRRFKPQEVVEPQEVVEA-EQVQQ 109 (170)
Q Consensus 78 -----~~~~a~~~~~~~~~e~Sa~~~~~v~~~-~~~~~ 109 (170)
...++++..++ .+.|||.+|+++.++ .|+..
T Consensus 139 ~~~~~L~~l~ks~~~~-l~~cs~~tge~l~~gidWL~~ 175 (185)
T KOG0073|consen 139 SKALDLEELAKSHHWR-LVKCSAVTGEDLLEGIDWLCD 175 (185)
T ss_pred HHhhCHHHhccccCce-EEEEeccccccHHHHHHHHHH
Confidence 34555666664 668999999999988 44443
No 130
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.66 E-value=1.2e-15 Score=109.15 Aligned_cols=101 Identities=18% Similarity=0.313 Sum_probs=78.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+.+|||||++.|..++..+++++|++++|+|++++.++.....|+..+.... .+.|+++|+||+|+.+ ... ..+.
T Consensus 46 ~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~-~~~--~~~~ 122 (159)
T cd04159 46 LKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG-ALS--VDEL 122 (159)
T ss_pred EEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC-CcC--HHHH
Confidence 4799999999999999999999999999999999999998888888776533 6889999999999865 322 2222
Q ss_pred HHHHH--h--cCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWS--R--RSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~--~--~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..... . .....++++|++++.|+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 152 (159)
T cd04159 123 IEQMNLKSITDREVSCYSISCKEKTNIDIV 152 (159)
T ss_pred HHHhCcccccCCceEEEEEEeccCCChHHH
Confidence 21111 0 11135778999999999976
No 131
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.64 E-value=2.4e-15 Score=114.32 Aligned_cols=104 Identities=25% Similarity=0.320 Sum_probs=83.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCC--------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN-AASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTT-------- 70 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~-~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~-------- 70 (170)
+.+|||+||++|..+++.|+.+++++++|||.++ ..+++....|...+.... .+.|+++||||+|+....
T Consensus 56 ~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~ 135 (219)
T COG1100 56 LQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILN 135 (219)
T ss_pred EEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHh
Confidence 4689999999999999999999999999999999 566677789999998887 479999999999998731
Q ss_pred ---CCCCHHHHHHHHHhc--CCCeEEEcccC--CcchhhhH
Q psy17235 71 ---PQVTEADMENFWSRR--SSRRFKPQEVV--EPQEVVEA 104 (170)
Q Consensus 71 ---~~v~~~~~~~~a~~~--~~~~~~e~Sa~--~~~~v~~~ 104 (170)
+.+........+... ..+.++++|++ ++.+|.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~ 176 (219)
T COG1100 136 QLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNEL 176 (219)
T ss_pred hhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHH
Confidence 344444444444433 23348899999 99999976
No 132
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.64 E-value=4.5e-16 Score=110.73 Aligned_cols=94 Identities=15% Similarity=0.020 Sum_probs=73.7
Q ss_pred eEEecCCcc-----ccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235 2 QLWDTGGME-----RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEA 76 (170)
Q Consensus 2 ~iwDt~G~e-----~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~ 76 (170)
.+|||||+. .|..+.+ .++++|++++|||++++.|+.. ..|.... ..|+++|+||+|+.+ +.+..+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~~--~~~~~~ 108 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLAE--ADVDIE 108 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccCC--cccCHH
Confidence 479999982 3444544 5899999999999999999865 3454321 249999999999864 355677
Q ss_pred HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++.++++..+...++++||++|.|+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 136 (142)
T TIGR02528 109 RAKELLETAGAEPIFEISSVDEQGLEAL 136 (142)
T ss_pred HHHHHHHHcCCCcEEEEecCCCCCHHHH
Confidence 8888888888766889999999999976
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.64 E-value=2.5e-15 Score=110.12 Aligned_cols=98 Identities=14% Similarity=0.297 Sum_probs=78.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+.+||++|+..+...+..+++++|++++|||++++.+|.....|+..+.... .++|+++++||+|+.+ ....+
T Consensus 60 ~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~~~~-- 134 (173)
T cd04155 60 LNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT---AAPAE-- 134 (173)
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc---CCCHH--
Confidence 4689999999999999999999999999999999999998888877765543 5799999999999865 22222
Q ss_pred HHHHHhcCCC-------eEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSR-------RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~-------~~~e~Sa~~~~~v~~~ 104 (170)
.+....+.. .++++||++|+|++++
T Consensus 135 -~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~ 166 (173)
T cd04155 135 -EIAEALNLHDLRDRTWHIQACSAKTGEGLQEG 166 (173)
T ss_pred -HHHHHcCCcccCCCeEEEEEeECCCCCCHHHH
Confidence 333334432 4679999999999987
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.63 E-value=3.5e-15 Score=108.79 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=76.6
Q ss_pred CeEEecCCcc----ccccchhhhcc---CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCCC
Q psy17235 1 MQLWDTGGME----RVASITSSYYK---FAEAAILVFSLDNA-ASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEGT 69 (170)
Q Consensus 1 l~iwDt~G~e----~~~~~~~~~~~---~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~~ 69 (170)
+.+|||||+. .+..++..+++ .+|++++|+|.+++ ++++.+..|.+.+.... .+.|+++|+||+|+.+
T Consensus 50 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~- 128 (170)
T cd01898 50 FVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD- 128 (170)
T ss_pred EEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC-
Confidence 4799999973 22334445444 59999999999999 89999999999887764 4789999999999976
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 70 TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 ~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
...+ .+....+........++++||+++.|+.+.
T Consensus 129 ~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 162 (170)
T cd01898 129 EEEL-FELLKELLKELWGKPVFPISALTGEGLDEL 162 (170)
T ss_pred chhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHH
Confidence 3333 344445555532335778999999999976
No 135
>KOG0075|consensus
Probab=99.62 E-value=2.9e-15 Score=106.09 Aligned_cols=100 Identities=19% Similarity=0.307 Sum_probs=79.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+.+||.|||++|++||..|+++++++++|+|..|++.+...+..+..+.... ..+|+++.|||.|+++ ..+..+.
T Consensus 67 iklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~---AL~~~~l 143 (186)
T KOG0075|consen 67 IKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG---ALSKIAL 143 (186)
T ss_pred EEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc---cccHHHH
Confidence 3589999999999999999999999999999999999998887777765444 7899999999999987 4554443
Q ss_pred HHHHH-----hcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWS-----RRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~-----~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+-.. +... ..+..|+++..|++..
T Consensus 144 i~rmgL~sitdREv-cC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 144 IERMGLSSITDREV-CCFSISCKEKVNIDIT 173 (186)
T ss_pred HHHhCccccccceE-EEEEEEEcCCccHHHH
Confidence 32221 1122 3556799999999966
No 136
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.61 E-value=3.1e-15 Score=109.01 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=71.1
Q ss_pred CeEEecCCcccccc---------chhhhccCCcEEEEEEeCCChhhH--HHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235 1 MQLWDTGGMERVAS---------ITSSYYKFAEAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNKSDLEGT 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~---------~~~~~~~~ad~iilv~D~t~~~Sf--~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~ 69 (170)
++||||||+..... ........+|++++|+|.+++.++ +....|+..+....++.|+++|+||+|+.+
T Consensus 49 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~- 127 (168)
T cd01897 49 WQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT- 127 (168)
T ss_pred EEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc-
Confidence 47999999843110 001112346899999999998754 666788888876556899999999999976
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 70 TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 ~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.+.. ..++++..+. .++++||++|.|+++.
T Consensus 128 ~~~~~~--~~~~~~~~~~-~~~~~Sa~~~~gi~~l 159 (168)
T cd01897 128 FEDLSE--IEEEEELEGE-EVLKISTLTEEGVDEV 159 (168)
T ss_pred hhhHHH--HHHhhhhccC-ceEEEEecccCCHHHH
Confidence 444443 4555554444 5789999999999986
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.60 E-value=4.6e-15 Score=107.24 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=68.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC--CCCH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTP--QVTE 75 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~--~v~~ 75 (170)
+++|||||++.|......+++++|++++|+|+++ +++++.+. + +... ...|+++|+||+|+.+ .. ....
T Consensus 53 ~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~-~---~~~~-~~~~~ilv~NK~Dl~~-~~~~~~~~ 126 (164)
T cd04171 53 LGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE-I---LELL-GIKRGLVVLTKADLVD-EDWLELVE 126 (164)
T ss_pred EEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH-H---HHHh-CCCcEEEEEECccccC-HHHHHHHH
Confidence 4799999999997777778999999999999987 45554432 1 1111 2349999999999975 21 1222
Q ss_pred HHHHHHHHhc--CCCeEEEcccCCcchhhhH
Q psy17235 76 ADMENFWSRR--SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 76 ~~~~~~a~~~--~~~~~~e~Sa~~~~~v~~~ 104 (170)
++..++.+.. ....++++||+++.|+++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 127 EEIRELLAGTFLADAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred HHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence 3444444442 2235788999999999976
No 138
>KOG3883|consensus
Probab=99.59 E-value=9.3e-15 Score=104.23 Aligned_cols=102 Identities=22% Similarity=0.337 Sum_probs=88.2
Q ss_pred CeEEecCCcccc-ccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERV-ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~-~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
|.|+||+|...+ ..+-.+|+.-+|++++|||..|++||+.+.-.-.+|.+.. ..+|+|++|||+|+.+ .+.+..+-
T Consensus 62 l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~-p~~vd~d~ 140 (198)
T KOG3883|consen 62 LRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE-PREVDMDV 140 (198)
T ss_pred EEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc-chhcCHHH
Confidence 579999998877 6688999999999999999999999998866555565554 6899999999999988 89999999
Q ss_pred HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++.||+.-....| +.+|.+..++.+.
T Consensus 141 A~~Wa~rEkvkl~-eVta~dR~sL~ep 166 (198)
T KOG3883|consen 141 AQIWAKREKVKLW-EVTAMDRPSLYEP 166 (198)
T ss_pred HHHHHhhhheeEE-EEEeccchhhhhH
Confidence 9999999888666 6788888888876
No 139
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.58 E-value=7.3e-15 Score=110.21 Aligned_cols=99 Identities=9% Similarity=0.047 Sum_probs=72.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-CCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ-VTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~-v~~~~~~ 79 (170)
+++|||||++.|..++..+++++|++++|||+++. .+.....|+..+.. .++|+++|+||+|+.. .+. ...++..
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~-~~~~~~~~~~~ 142 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE--LGLKPIVVINKIDRPD-ARPEEVVDEVF 142 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH--cCCCEEEEEECCCCCC-CCHHHHHHHHH
Confidence 47999999999999999999999999999999874 23333445544433 4789999999999965 222 2234455
Q ss_pred HHHHhc-------CCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRR-------SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~-------~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.... ++ .++++||++|.|+.+-
T Consensus 143 ~~~~~~~~~~~~~~~-~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 143 DLFIELGATEEQLDF-PVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHhCCccccCcc-CEEEeehhcccccccc
Confidence 554332 44 4778999999999765
No 140
>KOG0076|consensus
Probab=99.58 E-value=3.1e-15 Score=108.55 Aligned_cols=101 Identities=24% Similarity=0.458 Sum_probs=84.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+.+||.+||+..+++|..||..+||+|+++|.+|++.|+....-++.+.... .++|+++.+||.|+.+ .++..+.
T Consensus 71 l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~---~~~~~El 147 (197)
T KOG0076|consen 71 LSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQN---AMEAAEL 147 (197)
T ss_pred eEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhh---hhhHHHH
Confidence 4689999999999999999999999999999999999998888777776655 8999999999999977 5555554
Q ss_pred HHHHH---hcC--CCeEEEcccCCcchhhhH
Q psy17235 79 ENFWS---RRS--SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~---~~~--~~~~~e~Sa~~~~~v~~~ 104 (170)
..... ..+ -..|..+||.+|+||.++
T Consensus 148 ~~~~~~~e~~~~rd~~~~pvSal~gegv~eg 178 (197)
T KOG0076|consen 148 DGVFGLAELIPRRDNPFQPVSALTGEGVKEG 178 (197)
T ss_pred HHHhhhhhhcCCccCccccchhhhcccHHHH
Confidence 44333 222 135889999999999987
No 141
>KOG1673|consensus
Probab=99.56 E-value=2.2e-14 Score=102.61 Aligned_cols=104 Identities=15% Similarity=0.231 Sum_probs=85.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCC----CCCH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTP----QVTE 75 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~----~v~~ 75 (170)
+.|||.+||+++..+.+..+.++-+++++||+|.+.++.++..|+++.+..+ ..+| |+||+|.|+--+.. .--.
T Consensus 71 fSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~ 149 (205)
T KOG1673|consen 71 FSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETIS 149 (205)
T ss_pred EEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999988887 4455 67899999743111 1112
Q ss_pred HHHHHHHHhcCCCeEEEcccCCcchhhhHHH
Q psy17235 76 ADMENFWSRRSSRRFKPQEVVEPQEVVEAEQ 106 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~~ 106 (170)
.+++.+|+..+++.|+ ||+..+.||+..|.
T Consensus 150 ~qar~YAk~mnAsL~F-~Sts~sINv~KIFK 179 (205)
T KOG1673|consen 150 RQARKYAKVMNASLFF-CSTSHSINVQKIFK 179 (205)
T ss_pred HHHHHHHHHhCCcEEE-eeccccccHHHHHH
Confidence 4578899999998775 79989989886543
No 142
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.55 E-value=4.2e-14 Score=114.64 Aligned_cols=102 Identities=13% Similarity=0.052 Sum_probs=79.1
Q ss_pred CeEEecCCccc----cccchhh---hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCCCC
Q psy17235 1 MQLWDTGGMER----VASITSS---YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEGTT 70 (170)
Q Consensus 1 l~iwDt~G~e~----~~~~~~~---~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~~~ 70 (170)
+.+|||||... ...+... +++.++++++|+|++++++++.+..|..++..+. .+.|++||+||+|+.+ .
T Consensus 208 ~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~-~ 286 (335)
T PRK12299 208 FVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD-E 286 (335)
T ss_pred EEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC-c
Confidence 47899999632 2234444 4557999999999999889999999999998775 3789999999999976 4
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+..++...++...+.+ ++++||+++.||++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~-i~~iSAktg~GI~eL 319 (335)
T PRK12299 287 EEEREKRAALELAALGGP-VFLISAVTGEGLDEL 319 (335)
T ss_pred hhHHHHHHHHHHHhcCCC-EEEEEcCCCCCHHHH
Confidence 445555566666656554 678999999999976
No 143
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.55 E-value=1e-14 Score=100.72 Aligned_cols=65 Identities=42% Similarity=0.609 Sum_probs=56.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH---HHHHHHHhhCCCCeEEEEeeCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKIFLCGNKSD 65 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~---~~~~~i~~~~~~~pvvlvgnK~D 65 (170)
+++||++|++.+...+...+.++|++++|||++++.||+.+. .|+..+....+++|++|||||.|
T Consensus 52 ~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 52 LQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 479999999999888888899999999999999999999874 56777776667899999999998
No 144
>KOG0071|consensus
Probab=99.54 E-value=6.5e-14 Score=98.62 Aligned_cols=101 Identities=19% Similarity=0.371 Sum_probs=83.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
|.+||.+||++.+.+|++||.++.|+|||.|..+++..+.+++.+..+.+.. .++|++|.+||.|+++ ..++.|+
T Consensus 63 fNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~---A~~pqei 139 (180)
T KOG0071|consen 63 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD---AMKPQEI 139 (180)
T ss_pred EeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc---ccCHHHH
Confidence 5789999999999999999999999999999999999999988877776555 7899999999999987 5666666
Q ss_pred HHHHHh---cCC-CeEEEcccCCcchhhhH
Q psy17235 79 ENFWSR---RSS-RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~---~~~-~~~~e~Sa~~~~~v~~~ 104 (170)
..+..- .+- .....|+|.+|.++.+.
T Consensus 140 ~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 140 QDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred HHHhccccccCCccEeeccccccchhHHHH
Confidence 554422 121 35678899999998876
No 145
>KOG0096|consensus
Probab=99.53 E-value=7.8e-15 Score=107.89 Aligned_cols=100 Identities=23% Similarity=0.476 Sum_probs=84.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
|..|||+|||.+..+++-||-++.+.|++||++.+-++.++.+|..++.+.+.++|+|++|||.|..+ +.+. .....
T Consensus 61 f~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~--r~~k-~k~v~ 137 (216)
T KOG0096|consen 61 FNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA--RKVK-AKPVS 137 (216)
T ss_pred EEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc--cccc-cccce
Confidence 46899999999999999999999999999999999999999999999999999999999999999876 2321 22222
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+-+..++ .|++.||+++-|....
T Consensus 138 ~~rkknl-~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 138 FHRKKNL-QYYEISAKSNYNFERP 160 (216)
T ss_pred eeecccc-eeEEeecccccccccc
Confidence 3344454 4668899999999877
No 146
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.52 E-value=1.7e-13 Score=98.54 Aligned_cols=96 Identities=9% Similarity=0.095 Sum_probs=72.6
Q ss_pred CeEEecCCcccccc------chhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVAS------ITSSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~~------~~~~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+.+|||||++.+.. ++..++. ++|++++|+|.+++.+.. .|...+.. .+.|+++|+||+|+.+ ...
T Consensus 45 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~--~~~~~iiv~NK~Dl~~-~~~ 118 (158)
T cd01879 45 IEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE--LGLPVVVALNMIDEAE-KRG 118 (158)
T ss_pred EEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH--cCCCEEEEEehhhhcc-ccc
Confidence 46999999987764 4666775 999999999999865533 34444443 3689999999999976 444
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+..+ ...++..++.+ ++++||.++.|+.+.
T Consensus 119 ~~~~-~~~~~~~~~~~-~~~iSa~~~~~~~~l 148 (158)
T cd01879 119 IKID-LDKLSELLGVP-VVPTSARKGEGIDEL 148 (158)
T ss_pred chhh-HHHHHHhhCCC-eEEEEccCCCCHHHH
Confidence 4433 45777777775 668999999999976
No 147
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.51 E-value=1.3e-13 Score=97.89 Aligned_cols=102 Identities=25% Similarity=0.306 Sum_probs=81.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhhCC-CCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA-ASFHVLS-QHLLEIVTYAE-NAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~-~Sf~~~~-~~~~~i~~~~~-~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+.+|||||++.+..++..+++.+++++.++|++.. .++.... .|...+..... +.|+++++||+|+.. .. +....
T Consensus 52 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~-~~~~~ 129 (161)
T TIGR00231 52 FNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD-AK-LKTHV 129 (161)
T ss_pred EEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc-ch-hhHHH
Confidence 46899999999999999999999999999999988 8887775 78777776664 899999999999976 33 34344
Q ss_pred HHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
...+.. .+...++++||+++.|+.+.+
T Consensus 130 ~~~~~~-~~~~~~~~~sa~~~~gv~~~~ 156 (161)
T TIGR00231 130 AFLFAK-LNGEPIIPLSAETGKNIDSAF 156 (161)
T ss_pred HHHHhh-ccCCceEEeecCCCCCHHHHH
Confidence 444444 444458899999999999763
No 148
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.51 E-value=2.4e-13 Score=95.31 Aligned_cols=103 Identities=31% Similarity=0.477 Sum_probs=78.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHH--HhhCCCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i--~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+.+||++|+..+...+..+++.+|++++|||++++.++.....|.... .....+.|+++++||+|+.. .........
T Consensus 47 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~-~~~~~~~~~ 125 (157)
T cd00882 47 LQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPE-ERVVSEEEL 125 (157)
T ss_pred EEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc-ccchHHHHH
Confidence 469999999998888888999999999999999999999998873222 22237899999999999876 333332221
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
...........++++|+.++.++.+.
T Consensus 126 ~~~~~~~~~~~~~~~s~~~~~~i~~~ 151 (157)
T cd00882 126 AEQLAKELGVPYFETSAKTGENVEEL 151 (157)
T ss_pred HHHHHhhcCCcEEEEecCCCCChHHH
Confidence 23333344456889999999999876
No 149
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.51 E-value=7.8e-14 Score=120.68 Aligned_cols=98 Identities=17% Similarity=0.095 Sum_probs=78.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
|+||||||++.|...+..+++.+|++|+|||.++..+++....|...+. .++|+++|+||+|+.+ . .......+
T Consensus 72 l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~-~--~~~~~~~e 145 (595)
T TIGR01393 72 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPS-A--DPERVKKE 145 (595)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCc-c--CHHHHHHH
Confidence 4799999999999999999999999999999999877777777754432 3689999999999865 2 22333456
Q ss_pred HHHhcCCC--eEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSR--RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~--~~~e~Sa~~~~~v~~~ 104 (170)
++..++.. .++++||++|.||++.
T Consensus 146 l~~~lg~~~~~vi~vSAktG~GI~~L 171 (595)
T TIGR01393 146 IEEVIGLDASEAILASAKTGIGIEEI 171 (595)
T ss_pred HHHHhCCCcceEEEeeccCCCCHHHH
Confidence 66666764 4788999999999975
No 150
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.50 E-value=9.2e-14 Score=104.82 Aligned_cols=96 Identities=16% Similarity=0.040 Sum_probs=71.1
Q ss_pred CeEEecCCccc---------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCC
Q psy17235 1 MQLWDTGGMER---------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTT 70 (170)
Q Consensus 1 l~iwDt~G~e~---------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~ 70 (170)
+.+|||||... |...+ ..+.++|++++|+|.+++.++..+..|...+.... .+.|+++|+||+|+.. .
T Consensus 91 ~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~-~ 168 (204)
T cd01878 91 VLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD-D 168 (204)
T ss_pred EEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC-h
Confidence 47999999732 22222 23678999999999999999998888887776654 5789999999999865 2
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+. ..+...+. .++++||+++.|+.++
T Consensus 169 ~~~~-----~~~~~~~~-~~~~~Sa~~~~gi~~l 196 (204)
T cd01878 169 EELE-----ERLEAGRP-DAVFISAKTGEGLDEL 196 (204)
T ss_pred HHHH-----HHhhcCCC-ceEEEEcCCCCCHHHH
Confidence 2221 33444444 4778999999999976
No 151
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.49 E-value=1.4e-13 Score=107.25 Aligned_cols=91 Identities=15% Similarity=0.137 Sum_probs=75.7
Q ss_pred cccccchhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy17235 10 ERVASITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSR 88 (170)
Q Consensus 10 e~~~~~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~ 88 (170)
++|..+.+.+++++|++++|||+++|. ||+.+..|+..+.. .++|++||+||+||.+ .+.+..+.+..+. ..|.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~-~~~~~~~~~~~~~-~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLD-DEDMEKEQLDIYR-NIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCC-CHHHHHHHHHHHH-HCCCe
Confidence 678899999999999999999999988 99999999976643 5899999999999976 5566555565555 46764
Q ss_pred eEEEcccCCcchhhhHH
Q psy17235 89 RFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 89 ~~~e~Sa~~~~~v~~~~ 105 (170)
++++||++|.|+++.+
T Consensus 100 -v~~~SAktg~gi~eLf 115 (245)
T TIGR00157 100 -VLMTSSKNQDGLKELI 115 (245)
T ss_pred -EEEEecCCchhHHHHH
Confidence 6789999999999763
No 152
>PRK04213 GTP-binding protein; Provisional
Probab=99.48 E-value=2.4e-14 Score=107.65 Aligned_cols=94 Identities=18% Similarity=0.137 Sum_probs=64.5
Q ss_pred CeEEecCC-----------ccccccchhhhcc-CC---cEEEEEEeCCChhhHHHH-HHH------------HHHHHhhC
Q psy17235 1 MQLWDTGG-----------MERVASITSSYYK-FA---EAAILVFSLDNAASFHVL-SQH------------LLEIVTYA 52 (170)
Q Consensus 1 l~iwDt~G-----------~e~~~~~~~~~~~-~a---d~iilv~D~t~~~Sf~~~-~~~------------~~~i~~~~ 52 (170)
+++||||| ++.|..++..|+. ++ +++++|+|.++ +..+ ..| +..+..
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~-- 128 (201)
T PRK04213 54 FILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKS---FIEIIERWEGRGEIPIDVEMFDFLRE-- 128 (201)
T ss_pred eEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCcc---ccccccccccCCCcHHHHHHHHHHHH--
Confidence 47999999 6778888888875 44 56666666543 3322 223 111111
Q ss_pred CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCC--C------eEEEcccCCcchhhhH
Q psy17235 53 ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSS--R------RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 53 ~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~--~------~~~e~Sa~~~~~v~~~ 104 (170)
.++|+++|+||+|+.+ .+ .+...++++.++. + .++++||++| |+++.
T Consensus 129 ~~~p~iiv~NK~Dl~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l 183 (201)
T PRK04213 129 LGIPPIVAVNKMDKIK-NR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEEL 183 (201)
T ss_pred cCCCeEEEEECccccC-cH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHH
Confidence 4799999999999965 22 4566777777776 2 3789999999 99976
No 153
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.47 E-value=2.3e-13 Score=98.87 Aligned_cols=97 Identities=14% Similarity=0.206 Sum_probs=67.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC-HH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT-EA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~-~~ 76 (170)
+.+|||||++.|..++..+++.+|++++|+|.++. +++..+. .+.. .+.|+++|+||+|+.. ...-. .+
T Consensus 52 ~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~----~~~~--~~~p~ivv~NK~Dl~~-~~~~~~~~ 124 (168)
T cd01887 52 ITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIK----LAKA--ANVPFIVALNKIDKPN-ANPERVKN 124 (168)
T ss_pred EEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHH----HHHH--cCCCEEEEEEceeccc-ccHHHHHH
Confidence 47999999999999999999999999999999984 4443332 2222 4789999999999865 21100 01
Q ss_pred HHHHHHH----hcC-CCeEEEcccCCcchhhhH
Q psy17235 77 DMENFWS----RRS-SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~----~~~-~~~~~e~Sa~~~~~v~~~ 104 (170)
....+.. ..+ ...++++||++|.|+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 125 ELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred HHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 1111111 111 235789999999999976
No 154
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.47 E-value=2.6e-13 Score=98.91 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=69.4
Q ss_pred EEecCCcc-----ccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 3 LWDTGGME-----RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 3 iwDt~G~e-----~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+|||||+. .+..+. ..++++|++++|||.++..++. ..|+..+ ..+.|+++++||+|+.+ ...+.
T Consensus 41 ~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~~~~~ii~v~nK~Dl~~----~~~~~ 110 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRL--PAGLLDI---GVSKRQIAVISKTDMPD----ADVAA 110 (158)
T ss_pred cccCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCccccc--CHHHHhc---cCCCCeEEEEEccccCc----ccHHH
Confidence 69999973 222222 2378999999999999998873 3455443 24679999999999854 34567
Q ss_pred HHHHHHhcCC-CeEEEcccCCcchhhhH
Q psy17235 78 MENFWSRRSS-RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~-~~~~e~Sa~~~~~v~~~ 104 (170)
..+++...++ ..++++||++++|+++.
T Consensus 111 ~~~~~~~~~~~~p~~~~Sa~~g~gi~~l 138 (158)
T PRK15467 111 TRKLLLETGFEEPIFELNSHDPQSVQQL 138 (158)
T ss_pred HHHHHHHcCCCCCEEEEECCCccCHHHH
Confidence 7788888876 35778999999999976
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.44 E-value=6.2e-12 Score=105.51 Aligned_cols=91 Identities=19% Similarity=0.217 Sum_probs=69.2
Q ss_pred CeEEecCCccccccc--------hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASI--------TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~~~--------~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+++|||||+..+... ...+++++|++++|||.+++.+++.. |+..+.. .+.|+++|+||+|+.. .
T Consensus 253 v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~-~-- 325 (442)
T TIGR00450 253 IKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKI-N-- 325 (442)
T ss_pred EEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCC-c--
Confidence 469999998665432 24678999999999999999998875 7766543 4789999999999965 2
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+...+++.++.+ ++++||++ .||++.
T Consensus 326 ----~~~~~~~~~~~~-~~~vSak~-~gI~~~ 351 (442)
T TIGR00450 326 ----SLEFFVSSKVLN-SSNLSAKQ-LKIKAL 351 (442)
T ss_pred ----chhhhhhhcCCc-eEEEEEec-CCHHHH
Confidence 223456666765 55789998 588876
No 156
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.43 E-value=6e-13 Score=97.24 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=73.4
Q ss_pred CeEEecCCccc----cccch---hhhccCCcEEEEEEeCCCh------hhHHHHHHHHHHHHhhC--------CCCeEEE
Q psy17235 1 MQLWDTGGMER----VASIT---SSYYKFAEAAILVFSLDNA------ASFHVLSQHLLEIVTYA--------ENAKIFL 59 (170)
Q Consensus 1 l~iwDt~G~e~----~~~~~---~~~~~~ad~iilv~D~t~~------~Sf~~~~~~~~~i~~~~--------~~~pvvl 59 (170)
+.||||||... ...++ ..+++++|++++|+|.+++ .++.....|...+.... .+.|+++
T Consensus 46 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 125 (176)
T cd01881 46 IQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIY 125 (176)
T ss_pred EEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEE
Confidence 47999999732 22332 3357889999999999998 57888888888776543 3789999
Q ss_pred EeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 60 CGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 60 vgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
|+||+|+.. ...+............+ ..++++||+++.|+++.
T Consensus 126 v~NK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gl~~l 168 (176)
T cd01881 126 VLNKIDLDD-AEELEEELVRELALEEG-AEVVPISAKTEEGLDEL 168 (176)
T ss_pred EEEchhcCc-hhHHHHHHHHHHhcCCC-CCEEEEehhhhcCHHHH
Confidence 999999976 44433332233333333 45788999999999976
No 157
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.42 E-value=1e-12 Score=106.37 Aligned_cols=101 Identities=12% Similarity=0.107 Sum_probs=76.7
Q ss_pred CeEEecCCccc----cccchhhhcc---CCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMER----VASITSSYYK---FAEAAILVFSLDNA---ASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~----~~~~~~~~~~---~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~ 67 (170)
++||||||... ...+...+++ .++++++|+|+++. ++++.+..|..++..+. .+.|++||+||+|+.
T Consensus 207 ~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 207 FVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL 286 (329)
T ss_pred EEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence 47899999753 2234555544 69999999999987 78888888988887664 478999999999997
Q ss_pred CCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 68 GTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 68 ~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+ ... ..+..+.+++..+. .++++||+++.||++.
T Consensus 287 ~-~~~-~~~~~~~l~~~~~~-~vi~iSAktg~GI~eL 320 (329)
T TIGR02729 287 D-EEE-LAELLKELKKALGK-PVFPISALTGEGLDEL 320 (329)
T ss_pred C-hHH-HHHHHHHHHHHcCC-cEEEEEccCCcCHHHH
Confidence 6 322 23445566666665 4778999999999976
No 158
>KOG0074|consensus
Probab=99.42 E-value=3.5e-13 Score=95.10 Aligned_cols=101 Identities=18% Similarity=0.344 Sum_probs=80.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
|.+||++||...+..|..||.+.|++|+|.|.+|...|+.+...+-++.... ..+|+.+.+||.|+.. ..+.++.
T Consensus 64 LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt---aa~~eei 140 (185)
T KOG0074|consen 64 LNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT---AAKVEEI 140 (185)
T ss_pred EEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh---hcchHHH
Confidence 5799999999999999999999999999999999999999988777776555 6899999999999865 3333333
Q ss_pred HHHHHhcC----CCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRS----SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~----~~~~~e~Sa~~~~~v~~~ 104 (170)
..-+.-.+ ..+..+|||.+++++...
T Consensus 141 a~klnl~~lrdRswhIq~csals~eg~~dg 170 (185)
T KOG0074|consen 141 ALKLNLAGLRDRSWHIQECSALSLEGSTDG 170 (185)
T ss_pred HHhcchhhhhhceEEeeeCccccccCccCc
Confidence 22222222 246889999999999876
No 159
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.42 E-value=1.1e-12 Score=113.18 Aligned_cols=94 Identities=20% Similarity=0.248 Sum_probs=70.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+.|||||||+.|..++..++..+|++++|||.++ +++++.+. .... .++|+++++||+|+.+ ...++
T Consensus 137 i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~----~~~~--~~vPiIVviNKiDl~~----~~~e~ 206 (587)
T TIGR00487 137 ITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAIS----HAKA--ANVPIIVAINKIDKPE----ANPDR 206 (587)
T ss_pred EEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHH----HHHH--cCCCEEEEEECccccc----CCHHH
Confidence 4799999999999999999999999999999987 44554332 1111 4799999999999864 23344
Q ss_pred HHHHHHhcCC--------CeEEEcccCCcchhhhH
Q psy17235 78 MENFWSRRSS--------RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~--------~~~~e~Sa~~~~~v~~~ 104 (170)
........+. ..|+++||++|.|+++.
T Consensus 207 v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eL 241 (587)
T TIGR00487 207 VKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDEL 241 (587)
T ss_pred HHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHH
Confidence 4444443332 35889999999999976
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=1.3e-12 Score=110.63 Aligned_cols=102 Identities=18% Similarity=0.120 Sum_probs=68.7
Q ss_pred CeEEecCCc----------cccccch-hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235 1 MQLWDTGGM----------ERVASIT-SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT 69 (170)
Q Consensus 1 l~iwDt~G~----------e~~~~~~-~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~ 69 (170)
++||||||. +.|..+. ..+++++|++++|||.+++.|+..+. ++..+.. .+.|+|||+||+|+.+.
T Consensus 261 ~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 261 WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDE 337 (472)
T ss_pred EEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCCh
Confidence 368999995 3444443 34678999999999999999988774 4444443 47999999999999651
Q ss_pred CC-CCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 70 TP-QVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 70 ~~-~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.. .....+............++++||++|.||++.+
T Consensus 338 ~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf 374 (472)
T PRK03003 338 DRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLV 374 (472)
T ss_pred hHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHH
Confidence 11 1111222221222233356789999999999864
No 161
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=2.3e-12 Score=94.61 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=78.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
+.++|||||++|..||..+.+++.|.|++.|.+.+..| .....+..+... ..+|++|..||.|+.+ .-++++.++
T Consensus 70 v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~-~~ip~vVa~NK~DL~~---a~ppe~i~e 144 (187)
T COG2229 70 VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR-NPIPVVVAINKQDLFD---ALPPEKIRE 144 (187)
T ss_pred EEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc-cCCCEEEEeeccccCC---CCCHHHHHH
Confidence 46899999999999999999999999999999999999 444444443333 2399999999999987 667777776
Q ss_pred HHHhcC-CCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRS-SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~-~~~~~e~Sa~~~~~v~~~ 104 (170)
+.+... -...++.+|..+.++.+.
T Consensus 145 ~l~~~~~~~~vi~~~a~e~~~~~~~ 169 (187)
T COG2229 145 ALKLELLSVPVIEIDATEGEGARDQ 169 (187)
T ss_pred HHHhccCCCceeeeecccchhHHHH
Confidence 666552 234668899999888876
No 162
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.40 E-value=1e-12 Score=107.31 Aligned_cols=95 Identities=15% Similarity=0.059 Sum_probs=68.9
Q ss_pred CeEEecCCc---------cccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCC
Q psy17235 1 MQLWDTGGM---------ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTT 70 (170)
Q Consensus 1 l~iwDt~G~---------e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~ 70 (170)
+.||||+|. +.|...+. .+.+||++++|||.+++.+++.+..|...+.... .+.|+++|+||+|+.. .
T Consensus 239 i~l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~-~ 316 (351)
T TIGR03156 239 VLLTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD-E 316 (351)
T ss_pred EEEEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC-h
Confidence 469999997 22333222 4789999999999999999988877766655544 5789999999999865 2
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+ ..... +.+.++.+||++|.|+++.
T Consensus 317 ~~v-----~~~~~--~~~~~i~iSAktg~GI~eL 343 (351)
T TIGR03156 317 PRI-----ERLEE--GYPEAVFVSAKTGEGLDLL 343 (351)
T ss_pred HhH-----HHHHh--CCCCEEEEEccCCCCHHHH
Confidence 222 11111 2234778999999999975
No 163
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.40 E-value=6e-12 Score=105.87 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=67.0
Q ss_pred CeEEecCCccccccc--------hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASI--------TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~~~--------~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+.+|||||.+.+... ...+++++|++++|||.+++.+++....|.. ..+.|+++|+||+|+.. ...
T Consensus 265 i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~-~~~ 338 (449)
T PRK05291 265 LRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTG-EID 338 (449)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccc-cch
Confidence 478999998765432 2346889999999999999999887655543 35789999999999975 332
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+. ...+ ..++++||++|.|+++.
T Consensus 339 ~~--------~~~~-~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 339 LE--------EENG-KPVIRISAKTGEGIDEL 361 (449)
T ss_pred hh--------hccC-CceEEEEeeCCCCHHHH
Confidence 22 2223 35778999999999986
No 164
>KOG1660|consensus
Probab=99.40 E-value=1.5e-12 Score=103.17 Aligned_cols=73 Identities=58% Similarity=0.861 Sum_probs=68.2
Q ss_pred CcchhhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhhhhcC
Q psy17235 97 EPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELKTS 169 (170)
Q Consensus 97 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 169 (170)
.+..|..++.-++.+|+.|+++++.+++++.+|+.||+.||+|||.+++|||+||+|.+++.|++|+..||++
T Consensus 327 knkdv~~ae~~q~e~c~kfe~~s~~~k~eli~fk~rrvaaf~knl~el~eleikhak~~~~ll~~~~~~lk~~ 399 (399)
T KOG1660|consen 327 KNKDVHAAEAAQQEACQKFESISESAKEELIGFKTRRVAAFKKNLVELSELEIKHAKTNYSLLRQCLLALKEI 399 (399)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHhhcC
Confidence 3556777777899999999999999999999999999999999999999999999999999999999999974
No 165
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.38 E-value=2.6e-12 Score=111.39 Aligned_cols=98 Identities=18% Similarity=0.115 Sum_probs=75.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
|+||||||++.|...+..+++.+|++|+|+|.++....+....|..... .++|+++|+||+|+.+ .. ......+
T Consensus 76 lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~-a~--~~~v~~e 149 (600)
T PRK05433 76 LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPA-AD--PERVKQE 149 (600)
T ss_pred EEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCc-cc--HHHHHHH
Confidence 4799999999999999999999999999999999766666666654322 4789999999999865 21 2223344
Q ss_pred HHHhcCCC--eEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSR--RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~--~~~e~Sa~~~~~v~~~ 104 (170)
+...+++. .++.+||++|.|+.+.
T Consensus 150 i~~~lg~~~~~vi~iSAktG~GI~~L 175 (600)
T PRK05433 150 IEDVIGIDASDAVLVSAKTGIGIEEV 175 (600)
T ss_pred HHHHhCCCcceEEEEecCCCCCHHHH
Confidence 55555654 3788999999999865
No 166
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.38 E-value=2.9e-12 Score=110.64 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=52.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.|||||||+.|..++..+++.+|++++|||.++ +++++.+..+ .. .++|+++++||+|+..
T Consensus 71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~--~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YKTPFVVAANKIDRIP 135 (590)
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH--cCCCEEEEEECCCccc
Confidence 3589999999999999999999999999999997 6777665432 11 3789999999999864
No 167
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.38 E-value=2.4e-12 Score=92.14 Aligned_cols=95 Identities=14% Similarity=0.031 Sum_probs=66.8
Q ss_pred CeEEecCCcccccc--------chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVAS--------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~~--------~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+.+|||||+..+.. .+..+++++|++++|+|.+++.+.... .....+.. .+.|+++|+||+|+.+ ...
T Consensus 47 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~--~~~piiiv~nK~D~~~-~~~ 122 (157)
T cd01894 47 FILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRK--SKKPVILVVNKVDNIK-EED 122 (157)
T ss_pred EEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHh--cCCCEEEEEECcccCC-hHH
Confidence 46999999987544 334568899999999999887655442 12222222 3699999999999876 222
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
. .......+...++++|++++.|+++.
T Consensus 123 ~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 123 E-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred H-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 2 22334466656789999999999976
No 168
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.37 E-value=3.4e-12 Score=94.15 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=74.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC--CCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ--VTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~--v~~~~~ 78 (170)
+.+|||||+..+...+..+++.+|++++|+|.+++.+.... .++..+.. .+.|+++|+||+|+.. ... ...++.
T Consensus 64 ~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~i~iv~nK~D~~~-~~~~~~~~~~~ 139 (189)
T cd00881 64 VNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE--GGLPIIVAINKIDRVG-EEDLEEVLREI 139 (189)
T ss_pred EEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH--CCCCeEEEEECCCCcc-hhcHHHHHHHH
Confidence 46899999999989999999999999999999987665432 34444333 5799999999999865 222 123344
Q ss_pred HHHHHhcC-------------CCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRS-------------SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~-------------~~~~~e~Sa~~~~~v~~~ 104 (170)
.+..+..+ ...++++||++|.|+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l 178 (189)
T cd00881 140 KELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEEL 178 (189)
T ss_pred HHHHccccccchhhhhcccCCcceEEEEecccCcCHHHH
Confidence 44444433 345789999999999976
No 169
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.36 E-value=2.3e-12 Score=97.54 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=67.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC--C
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV--T 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v--~ 74 (170)
+.||||||++.|...+...+.++|++++|+|.+++ ++++.+..| ... ...|+++|+||+|+.+ .... .
T Consensus 85 i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~-~~~~iiivvNK~Dl~~-~~~~~~~ 158 (203)
T cd01888 85 VSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM-GLKHIIIVQNKIDLVK-EEQALEN 158 (203)
T ss_pred EEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc-CCCcEEEEEEchhccC-HHHHHHH
Confidence 46999999999877777778889999999999973 445444333 111 2357999999999865 2111 1
Q ss_pred HHHHHHHHHhcC--CCeEEEcccCCcchhhhH
Q psy17235 75 EADMENFWSRRS--SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 75 ~~~~~~~a~~~~--~~~~~e~Sa~~~~~v~~~ 104 (170)
.++.+.+...+. ...++++||++|.|+++.
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L 190 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVL 190 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHH
Confidence 233444444331 224778999999999976
No 170
>KOG0072|consensus
Probab=99.36 E-value=5e-12 Score=89.49 Aligned_cols=106 Identities=20% Similarity=0.367 Sum_probs=79.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++||.+||-..+..|+.||.+.|++|+|+|.+|+.........+-.+.+.. ....++|++||.|... ..+..|+
T Consensus 64 ~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~---~~t~~E~ 140 (182)
T KOG0072|consen 64 FQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG---ALTRSEV 140 (182)
T ss_pred ceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh---hhhHHHH
Confidence 5899999999999999999999999999999999988776665554444333 5788999999999876 3333332
Q ss_pred HHHH----HhcCCCeEEEcccCCcchhhhH-HHHHH
Q psy17235 79 ENFW----SRRSSRRFKPQEVVEPQEVVEA-EQVQQ 109 (170)
Q Consensus 79 ~~~a----~~~~~~~~~e~Sa~~~~~v~~~-~~~~~ 109 (170)
.... -.......+++||.+|+|++++ .|++.
T Consensus 141 ~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~ 176 (182)
T KOG0072|consen 141 LKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQR 176 (182)
T ss_pred HHHhChHHHhhheeEEEeeccccccCCcHHHHHHHH
Confidence 2111 0112245789999999999998 55543
No 171
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.35 E-value=4e-12 Score=107.59 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=67.2
Q ss_pred CeEEecCCccc--------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMER--------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~--------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+.+|||||++. +...+..+++++|++|+|||.++..++.. ..|...+.. .+.|+++|+||+|+.. .
T Consensus 88 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~-~-- 161 (472)
T PRK03003 88 FTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDER-G-- 161 (472)
T ss_pred EEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCc-c--
Confidence 46899999863 34456778999999999999999877643 234444433 4799999999999864 1
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+....+ ..+....+++||++|.|+.+.
T Consensus 162 -~~~~~~~~--~~g~~~~~~iSA~~g~gi~eL 190 (472)
T PRK03003 162 -EADAAALW--SLGLGEPHPVSALHGRGVGDL 190 (472)
T ss_pred -chhhHHHH--hcCCCCeEEEEcCCCCCcHHH
Confidence 12222223 344434458999999999976
No 172
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.35 E-value=3.9e-12 Score=111.90 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=69.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+.||||||++.|..++..+++.+|++|+|+|.++ +++++.+.. +.. .++|+||++||+|+.+ . ..++
T Consensus 297 ItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~----~k~--~~iPiIVViNKiDl~~-~---~~e~ 366 (742)
T CHL00189 297 IVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINY----IQA--ANVPIIVAINKIDKAN-A---NTER 366 (742)
T ss_pred EEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHH----HHh--cCceEEEEEECCCccc-c---CHHH
Confidence 4799999999999999999999999999999988 455554432 221 4799999999999865 2 1222
Q ss_pred HHHH-------HHhcC-CCeEEEcccCCcchhhhH
Q psy17235 78 MENF-------WSRRS-SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~-------a~~~~-~~~~~e~Sa~~~~~v~~~ 104 (170)
..+. ...++ ...|+++||++|.|+++.
T Consensus 367 v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeL 401 (742)
T CHL00189 367 IKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKL 401 (742)
T ss_pred HHHHHHHhccchHhhCCCceEEEEECCCCCCHHHH
Confidence 2222 22233 245889999999999976
No 173
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.35 E-value=1.2e-11 Score=103.02 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=75.5
Q ss_pred CeEEecCCccc----cccchhhhcc---CCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMER----VASITSSYYK---FAEAAILVFSLDNA---ASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~----~~~~~~~~~~---~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~ 67 (170)
|.||||||... ...+...|++ .++++++|+|+++. +++++...|..++..+. .+.|++||+||+|+.
T Consensus 208 ~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 208 FVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred EEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 47999999642 3345555544 59999999999875 67888888888887765 478999999999985
Q ss_pred CCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 68 GTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 68 ~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
. ..+....+++.++. .++++||+++.|+++.
T Consensus 288 ~-----~~e~l~~l~~~l~~-~i~~iSA~tgeGI~eL 318 (424)
T PRK12297 288 E-----AEENLEEFKEKLGP-KVFPISALTGQGLDEL 318 (424)
T ss_pred C-----CHHHHHHHHHHhCC-cEEEEeCCCCCCHHHH
Confidence 4 23456667777774 5778999999999987
No 174
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.35 E-value=1.7e-12 Score=108.49 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=73.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhCCCCeEEEEeeCCCCCCCCCC----CCH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ-HLLEIVTYAENAKIFLCGNKSDLEGTTPQ----VTE 75 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~-~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~----v~~ 75 (170)
+.||||||++.|.......++++|++++|+|.++.+++..... +...+.......|++|++||+|+.+ ... ...
T Consensus 87 i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~-~~~~~~~~~~ 165 (426)
T TIGR00483 87 VTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVN-YDEEEFEAIK 165 (426)
T ss_pred EEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccC-ccHHHHHHHH
Confidence 4799999999987666667889999999999999865422211 1112223334468999999999864 111 224
Q ss_pred HHHHHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235 76 ADMENFWSRRSS----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 76 ~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~~ 104 (170)
+++..+++..++ ..|+++||++|.|+.++
T Consensus 166 ~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 166 KEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred HHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 567778877764 35889999999999875
No 175
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.34 E-value=3.5e-12 Score=96.64 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=58.7
Q ss_pred CeEEecCCccccccchhhhccCC-cEEEEEEeCCCh-hhHHHHHHHHHHHHhh----CCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFA-EAAILVFSLDNA-ASFHVLSQHLLEIVTY----AENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~a-d~iilv~D~t~~-~Sf~~~~~~~~~i~~~----~~~~pvvlvgnK~Dl~~ 68 (170)
++||||||++++..++..+++++ +++|+|+|.++. .++..+..|+..+... .+.+|++|++||+|+..
T Consensus 50 ~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 50 FRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred EEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 47999999999999999999999 999999999998 7888887777665432 26899999999999865
No 176
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.33 E-value=7.5e-12 Score=110.87 Aligned_cols=94 Identities=16% Similarity=0.229 Sum_probs=69.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+.||||||++.|..++..+++.+|++|+|||.++ +++++.+. .... .++|+||++||+|+.+ . ..+.
T Consensus 339 ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~----~a~~--~~vPiIVviNKiDl~~-a---~~e~ 408 (787)
T PRK05306 339 ITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAIN----HAKA--AGVPIIVAINKIDKPG-A---NPDR 408 (787)
T ss_pred EEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHH----HHHh--cCCcEEEEEECccccc-c---CHHH
Confidence 4799999999999999999999999999999988 45555432 1111 4799999999999965 2 1121
Q ss_pred HH-------HHHHhcC-CCeEEEcccCCcchhhhH
Q psy17235 78 ME-------NFWSRRS-SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~-------~~a~~~~-~~~~~e~Sa~~~~~v~~~ 104 (170)
.. .++..++ ...|+++||++|.||++.
T Consensus 409 V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eL 443 (787)
T PRK05306 409 VKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDEL 443 (787)
T ss_pred HHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHH
Confidence 11 1233333 235888999999999976
No 177
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.31 E-value=8.1e-12 Score=108.05 Aligned_cols=97 Identities=19% Similarity=0.094 Sum_probs=73.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCC--C
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQV--T 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v--~ 74 (170)
+.||||||++.|......++.++|++++|+|.++ +++++.+. ++ .. .++| +++|+||+|+.+ ...+ .
T Consensus 52 v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~-il---~~--lgi~~iIVVlNK~Dlv~-~~~~~~~ 124 (581)
T TIGR00475 52 LGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA-VL---DL--LGIPHTIVVITKADRVN-EEEIKRT 124 (581)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH-HH---HH--cCCCeEEEEEECCCCCC-HHHHHHH
Confidence 4699999999998888888999999999999998 56666543 22 21 2577 999999999976 3322 2
Q ss_pred HHHHHHHHHhcCC---CeEEEcccCCcchhhhH
Q psy17235 75 EADMENFWSRRSS---RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 75 ~~~~~~~a~~~~~---~~~~e~Sa~~~~~v~~~ 104 (170)
.+++..+.+..+. ..++++||++|.|+++.
T Consensus 125 ~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL 157 (581)
T TIGR00475 125 EMFMKQILNSYIFLKNAKIFKTSAKTGQGIGEL 157 (581)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhH
Confidence 3456666666542 35789999999999976
No 178
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.31 E-value=1.3e-11 Score=97.34 Aligned_cols=98 Identities=13% Similarity=0.044 Sum_probs=69.4
Q ss_pred CeEEecCCcccc-cc-------chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERV-AS-------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~-~~-------~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+.+|||||.... .. ....+++++|++++|+|.++..+++ ..++..+.. .+.|+++|+||+|+.. . .
T Consensus 50 ii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~-~-~ 123 (270)
T TIGR00436 50 IIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKF-K-D 123 (270)
T ss_pred EEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCC-H-H
Confidence 368999997532 11 1345688999999999999987775 344444433 3789999999999864 2 2
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
...+....++...+...++++||++|.|+++.
T Consensus 124 ~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L 155 (270)
T TIGR00436 124 KLLPLIDKYAILEDFKDIVPISALTGDNTSFL 155 (270)
T ss_pred HHHHHHHHHHhhcCCCceEEEecCCCCCHHHH
Confidence 22234455555556556889999999999976
No 179
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.31 E-value=2e-11 Score=101.98 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=67.2
Q ss_pred CeEEecCCccccccch-----------hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235 1 MQLWDTGGMERVASIT-----------SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~-----------~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~ 69 (170)
+.+|||||+.++..+. ..+++.+|++++|+|.+++.+..... ++..+.. .+.|+++|+||+|+..
T Consensus 222 ~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~--~~~~iiiv~NK~Dl~~- 297 (429)
T TIGR03594 222 YLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE--AGKALVIVVNKWDLVK- 297 (429)
T ss_pred EEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH--cCCcEEEEEECcccCC-
Confidence 4699999976543322 24688999999999999988877653 3333333 3789999999999863
Q ss_pred CCCCCHHHHH-HHHHh---cCCCeEEEcccCCcchhhhHH
Q psy17235 70 TPQVTEADME-NFWSR---RSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 70 ~~~v~~~~~~-~~a~~---~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
. ....++.. .+... .+...++++||++|.|+.+.+
T Consensus 298 ~-~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~ 336 (429)
T TIGR03594 298 D-EKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLL 336 (429)
T ss_pred C-HHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHH
Confidence 1 11111221 12222 233457889999999999864
No 180
>KOG1707|consensus
Probab=99.30 E-value=2.1e-12 Score=108.72 Aligned_cols=137 Identities=18% Similarity=0.141 Sum_probs=103.4
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhC---CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYA---ENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~---~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
.|.||+..+.-......-++.||++.+||+++++.|++.+. .|++.+++.. .++|+||||||+|+.. ....+.+.
T Consensus 59 ~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~-~~~~s~e~ 137 (625)
T KOG1707|consen 59 SIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD-NENNSDEV 137 (625)
T ss_pred EEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc-ccccchhH
Confidence 57888755543344466789999999999999999999996 7999999888 7899999999999977 33333333
Q ss_pred -HHHHHHhc-CCCeEEEcccCCcchhhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhH
Q psy17235 78 -MENFWSRR-SSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNL 141 (170)
Q Consensus 78 -~~~~a~~~-~~~~~~e~Sa~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (170)
..-+..++ .+...++|||++-.|+.++|...|. ..+.........+..+++.+.++|..+-+
T Consensus 138 ~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqK--aVihPt~PLyda~~qelkp~~v~al~RIF 201 (625)
T KOG1707|consen 138 NTLPIMIAFAEIETCIECSALTLANVSELFYYAQK--AVIHPTSPLYDAEEQELKPRCVKALKRIF 201 (625)
T ss_pred HHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhh--eeeccCccccccccccccHHHHHHHHHHH
Confidence 33344444 5667889999999999999877765 34455666667777777778887776544
No 181
>PRK15494 era GTPase Era; Provisional
Probab=99.30 E-value=1.9e-11 Score=99.52 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=66.7
Q ss_pred CeEEecCCccc-cccchh-------hhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCCC
Q psy17235 1 MQLWDTGGMER-VASITS-------SYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTTP 71 (170)
Q Consensus 1 l~iwDt~G~e~-~~~~~~-------~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~ 71 (170)
+.||||||+.. +..+.. .+++++|++++|+|.++ +|..+. .|+..+... +.|+++|+||+|+.+ .
T Consensus 102 i~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~-~- 175 (339)
T PRK15494 102 VILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIES-K- 175 (339)
T ss_pred EEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcc-c-
Confidence 46899999843 333222 34789999999999665 555553 455555443 467788999999865 2
Q ss_pred CCCHHHHHHHHHhcC-CCeEEEcccCCcchhhhH
Q psy17235 72 QVTEADMENFWSRRS-SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 72 ~v~~~~~~~~a~~~~-~~~~~e~Sa~~~~~v~~~ 104 (170)
...++.+++...+ ...++++||++|.|+++.
T Consensus 176 --~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL 207 (339)
T PRK15494 176 --YLNDIKAFLTENHPDSLLFPISALSGKNIDGL 207 (339)
T ss_pred --cHHHHHHHHHhcCCCcEEEEEeccCccCHHHH
Confidence 2455666666554 356889999999999976
No 182
>PRK11058 GTPase HflX; Provisional
Probab=99.29 E-value=2.2e-11 Score=101.72 Aligned_cols=97 Identities=12% Similarity=-0.005 Sum_probs=67.5
Q ss_pred eEEecCCcccc--ccchh------hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCC
Q psy17235 2 QLWDTGGMERV--ASITS------SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 2 ~iwDt~G~e~~--~~~~~------~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~ 72 (170)
.+|||+|..+. ..++. ..++++|++|+|+|.+++.+++.+..|...+.... .+.|+++|+||+|+.. ...
T Consensus 248 ~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~-~~~ 326 (426)
T PRK11058 248 VLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD-DFE 326 (426)
T ss_pred EEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC-chh
Confidence 68999998432 22233 23689999999999999999888765544444333 4799999999999864 211
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.... ....+.+.++.+||++|.|+++.
T Consensus 327 -~~~~----~~~~~~~~~v~ISAktG~GIdeL 353 (426)
T PRK11058 327 -PRID----RDEENKPIRVWLSAQTGAGIPLL 353 (426)
T ss_pred -HHHH----HHhcCCCceEEEeCCCCCCHHHH
Confidence 1111 11245555677999999999976
No 183
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.29 E-value=2.5e-11 Score=86.73 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=66.4
Q ss_pred CeEEecCCccccccc--------hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASI--------TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~~~--------~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+.+|||||...+... ....+.++|++++|+|++++.+......|.. ..+.|+++|+||+|+.+ ...
T Consensus 51 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~-~~~ 124 (157)
T cd04164 51 VRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLP-DSE 124 (157)
T ss_pred EEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCC-ccc
Confidence 468999997655321 2346779999999999999888877655533 35799999999999876 332
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
. .... ....++++||+++.|+.+.
T Consensus 125 ~-------~~~~-~~~~~~~~Sa~~~~~v~~l 148 (157)
T cd04164 125 L-------LSLL-AGKPIIAISAKTGEGLDEL 148 (157)
T ss_pred c-------cccc-CCCceEEEECCCCCCHHHH
Confidence 2 2222 2346788999999999976
No 184
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.27 E-value=4.9e-11 Score=86.38 Aligned_cols=101 Identities=19% Similarity=0.137 Sum_probs=66.7
Q ss_pred CeEEecCCcccc----------ccc-hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235 1 MQLWDTGGMERV----------ASI-TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT 69 (170)
Q Consensus 1 l~iwDt~G~e~~----------~~~-~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~ 69 (170)
+.+|||||.... ..+ ....++++|++++|+|.+++.+..... ++..+.. .+.|+++++||+|+.+
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~nK~Dl~~- 127 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLILE--EGKALVIVVNKWDLVE- 127 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh--cCCCEEEEEeccccCC-
Confidence 368999997433 111 123567999999999999998876543 3333322 3689999999999876
Q ss_pred CCCCCHHHH-HHHHHhcC---CCeEEEcccCCcchhhhHH
Q psy17235 70 TPQVTEADM-ENFWSRRS---SRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 70 ~~~v~~~~~-~~~a~~~~---~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+....++. ..+.+..+ ...++++||+++.|+.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (174)
T cd01895 128 KDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLF 167 (174)
T ss_pred ccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHH
Confidence 332333322 22333332 3458899999999999863
No 185
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.26 E-value=4.1e-11 Score=103.87 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=72.2
Q ss_pred CeEEecCCccccccc------hhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASI------TSSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~~~------~~~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+++|||||++.+... +..|+. ++|++++|+|.++.+. ...+..++.+ .++|+++|+||+|+.+ .+.
T Consensus 43 i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~--~~~PiIIVlNK~Dl~~-~~~ 116 (591)
T TIGR00437 43 IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE--LGIPMILALNLVDEAE-KKG 116 (591)
T ss_pred EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh--cCCCEEEEEehhHHHH-hCC
Confidence 469999999887654 444543 7999999999987432 2233333333 4799999999999876 455
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
+. .+.+.+++..|++ ++++||++|.|+++.+
T Consensus 117 i~-~d~~~L~~~lg~p-vv~tSA~tg~Gi~eL~ 147 (591)
T TIGR00437 117 IR-IDEEKLEERLGVP-VVPTSATEGRGIERLK 147 (591)
T ss_pred Ch-hhHHHHHHHcCCC-EEEEECCCCCCHHHHH
Confidence 54 3567888888985 6689999999999983
No 186
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.25 E-value=1.6e-11 Score=102.64 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=68.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC---CCCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHV-LSQHLLEIVTYAENAKIFLCGNKSDLEGTTP---QVTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~-~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~---~v~~~ 76 (170)
+.||||||++.|.......++.+|++++|+|.+++.++.. ...++..+ ......|+++++||+|+.+... ....+
T Consensus 86 i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~~~~~iivviNK~Dl~~~~~~~~~~~~~ 164 (425)
T PRK12317 86 FTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RTLGINQLIVAINKMDAVNYDEKRYEEVKE 164 (425)
T ss_pred EEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHcCCCeEEEEEEccccccccHHHHHHHHH
Confidence 4689999999886654455789999999999997322211 11222222 2223347999999999864111 12234
Q ss_pred HHHHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRRSS----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~----~~~~e~Sa~~~~~v~~~ 104 (170)
+...+.+..++ ..++++||++|.|+.+.
T Consensus 165 ~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 165 EVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 56666666664 35889999999999874
No 187
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.25 E-value=2.5e-11 Score=92.20 Aligned_cols=101 Identities=21% Similarity=0.208 Sum_probs=68.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC----CCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ----VTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~----v~~~ 76 (170)
+.||||||++.|.......++.+|++|+|+|.++...-.. ..... +.......|+|+|.||+|+.. ... ....
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~-~~~~~~~~~iIvviNK~D~~~-~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSY-ILSLLGIRHVVVAVNKMDLVD-YSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHH-HHHHcCCCcEEEEEEchhccc-CCHHHHHHHHH
Confidence 4689999999886666667899999999999987632221 11111 122222345788999999864 211 1123
Q ss_pred HHHHHHHhcCCC--eEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRRSSR--RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~--~~~e~Sa~~~~~v~~~ 104 (170)
+...+.+.++.. .++.+||++|.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 455666777753 3889999999999864
No 188
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.24 E-value=3e-11 Score=90.42 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=62.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC-CCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT-TPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~-~~~v~~~~~~ 79 (170)
+.+|||||+..+..........+|++++|+|.++..+......|. +... .+.|+++++||+|+... .+....++..
T Consensus 70 ~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~ 146 (192)
T cd01889 70 ITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-LCKKLIVVLNKIDLIPEEERERKIEKMK 146 (192)
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-cCCCEEEEEECcccCCHHHHHHHHHHHH
Confidence 478999999665332223345689999999999865544433332 1122 26799999999998641 1112223332
Q ss_pred HHH-Hh-----cCCCeEEEcccCCcchhhhH
Q psy17235 80 NFW-SR-----RSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a-~~-----~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+.. .. .....++++||++|.|+++.
T Consensus 147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L 177 (192)
T cd01889 147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAEL 177 (192)
T ss_pred HHHHHHHHhcCcCCCCEEEEeccCCCCHHHH
Confidence 221 11 12235788999999999975
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.24 E-value=6.9e-11 Score=83.72 Aligned_cols=100 Identities=16% Similarity=0.058 Sum_probs=69.1
Q ss_pred CeEEecCCccccccch-------hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASIT-------SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV 73 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~-------~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v 73 (170)
+.+|||||+..+.... ..+++.+|++++|+|.+++.+..... |...... .+.|+++|+||+|+.. ...+
T Consensus 47 ~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~-~~~~ 122 (163)
T cd00880 47 VVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLP-EEEE 122 (163)
T ss_pred EEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCC-hhhH
Confidence 4799999987765433 34788999999999999988877654 3333332 5899999999999866 2222
Q ss_pred CHHH--HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 74 TEAD--MENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 74 ~~~~--~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.... ............++++||+++.|+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 123 EELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred HHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 2111 112222333446778899999999876
No 190
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.23 E-value=6.8e-11 Score=102.31 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=51.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~ 67 (170)
+.||||||++.|..++...++.+|++++|+|.++ +++++.+..+ .. .++|+++++||+|+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~--~~vpiIvviNK~D~~ 136 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR--RKTPFVVAANKIDRI 136 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH--cCCCEEEEEECcCCc
Confidence 3689999999999999999999999999999998 7788766432 11 378999999999985
No 191
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.21 E-value=3.6e-11 Score=89.01 Aligned_cols=99 Identities=10% Similarity=0.115 Sum_probs=66.0
Q ss_pred CeEEecCCc----------cccccchhhhccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGM----------ERVASITSSYYKF---AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~----------e~~~~~~~~~~~~---ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~ 67 (170)
+.+|||||. +.|..+...|++. ++++++|+|.+++-+..... ++..+.. .+.|+++++||+|+.
T Consensus 66 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~--~~~pviiv~nK~D~~ 142 (179)
T TIGR03598 66 FRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE--RGIPVLIVLTKADKL 142 (179)
T ss_pred EEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccC
Confidence 479999994 3344455566664 57999999999876665542 2233322 368999999999986
Q ss_pred CC-CCCCCHHHHHHHHHhcCC-CeEEEcccCCcchhh
Q psy17235 68 GT-TPQVTEADMENFWSRRSS-RRFKPQEVVEPQEVV 102 (170)
Q Consensus 68 ~~-~~~v~~~~~~~~a~~~~~-~~~~e~Sa~~~~~v~ 102 (170)
.. ......++++...+..+. ..++++||++|+|++
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 143 KKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred CHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 41 122233455555555543 268899999999974
No 192
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.19 E-value=9.2e-11 Score=98.19 Aligned_cols=93 Identities=20% Similarity=0.186 Sum_probs=66.4
Q ss_pred CeEEecCCccc--------cccchhhhccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhCCCCeEEEEeeCCCCCCCC
Q psy17235 1 MQLWDTGGMER--------VASITSSYYKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNKSDLEGTT 70 (170)
Q Consensus 1 l~iwDt~G~e~--------~~~~~~~~~~~ad~iilv~D~t~~~Sf~--~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~ 70 (170)
+.+|||||++. +......+++++|++++|+|.+++.+.. .+..|+.. .+.|+++|+||+|+.+ .
T Consensus 51 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~-----~~~piilv~NK~D~~~-~ 124 (435)
T PRK00093 51 FILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK-----SNKPVILVVNKVDGPD-E 124 (435)
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCcEEEEEECccCcc-c
Confidence 47999999986 2333456788999999999998865443 33445443 2789999999999754 1
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.....++ ...|+..++++||++|.|+.+.
T Consensus 125 ----~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l 153 (435)
T PRK00093 125 ----EADAYEF-YSLGLGEPYPISAEHGRGIGDL 153 (435)
T ss_pred ----hhhHHHH-HhcCCCCCEEEEeeCCCCHHHH
Confidence 1222333 3456665778999999999876
No 193
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.17 E-value=2.2e-10 Score=82.14 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=68.2
Q ss_pred CeEEecCCcccccc--------chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVAS--------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~~--------~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+.+|||||...... ....++..+|++++|+|.+++.+.. ...+...+... +.|+++|+||+|+.. ...
T Consensus 53 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~--~~~~iiv~nK~Dl~~-~~~ 128 (168)
T cd04163 53 IIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKKS--KTPVILVLNKIDLVK-DKE 128 (168)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHh--CCCEEEEEEchhccc-cHH
Confidence 35899999754322 3345688999999999999872221 12233333332 689999999999874 233
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
...+....+....+...++++|++++.++++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l 160 (168)
T cd04163 129 DLLPLLEKLKELGPFAEIFPISALKGENVDEL 160 (168)
T ss_pred HHHHHHHHHHhccCCCceEEEEeccCCChHHH
Confidence 33444555555555567889999999999976
No 194
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.17 E-value=5.1e-11 Score=91.24 Aligned_cols=100 Identities=14% Similarity=0.139 Sum_probs=65.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA-------SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV 73 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~-------Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v 73 (170)
+.+|||||+..|...+...++.+|++++|+|.++.. ..+....| ... ......|++++.||+|+.. . ..
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~iiivvNK~Dl~~-~-~~ 154 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLA-RTLGVKQLIVAVNKMDDVT-V-NW 154 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHH-HHcCCCeEEEEEEcccccc-c-cc
Confidence 478999999888766666678899999999999842 11222222 122 2223468999999999863 1 11
Q ss_pred C-------HHHHHHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235 74 T-------EADMENFWSRRSS----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 74 ~-------~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~~ 104 (170)
+ .++...+....+. ..++.+||++|.|+++.
T Consensus 155 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~ 196 (219)
T cd01883 155 SEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEK 196 (219)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcC
Confidence 1 1223333445554 35889999999999864
No 195
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.17 E-value=1.2e-10 Score=89.44 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=56.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+.||||||++.|......+++.+|++++|||+++..+.+....| ..... .++|+++++||+|+....+.+++++
T Consensus 75 i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~--~~~p~ilviNKiD~~~~e~~~~~~~ 148 (222)
T cd01885 75 INLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK--ERVKPVLVINKIDRLILELKLSPEE 148 (222)
T ss_pred EEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH--cCCCEEEEEECCCcchhhhcCCHHH
Confidence 46899999999999999999999999999999987766543222 22222 3689999999999863245566554
No 196
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.15 E-value=2.8e-10 Score=103.28 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=51.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.||||||++.|..++...+..+|++++|+|.++ +++++.+..+ .. .++|+++|+||+|+..
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~l----k~--~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINIL----RQ--YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHH----HH--cCCCEEEEEECCCCcc
Confidence 4799999999999998888999999999999997 6777765422 22 3689999999999864
No 197
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.12 E-value=2.1e-10 Score=85.69 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=69.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-CCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ-VTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~-v~~~~~~ 79 (170)
+.++||||+..|.......++.+|++|+|+|..+.-.-.. ...+..+.. .++|++++.||+|+.. .+. -..++..
T Consensus 72 i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~--~~~p~ivvlNK~D~~~-~~~~~~~~~~~ 147 (188)
T PF00009_consen 72 ITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE--LGIPIIVVLNKMDLIE-KELEEIIEEIK 147 (188)
T ss_dssp EEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH--TT-SEEEEEETCTSSH-HHHHHHHHHHH
T ss_pred eeecccccccceeecccceecccccceeeeeccccccccc-ccccccccc--cccceEEeeeeccchh-hhHHHHHHHHH
Confidence 4689999999998888888999999999999987644332 233333333 3788999999999863 111 1112222
Q ss_pred -HHHHhcCC-----CeEEEcccCCcchhhhH
Q psy17235 80 -NFWSRRSS-----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 -~~a~~~~~-----~~~~e~Sa~~~~~v~~~ 104 (170)
.+.+..+. ..++.+||.+|.|+.+.
T Consensus 148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~L 178 (188)
T PF00009_consen 148 EKLLKEYGENGEEIVPVIPISALTGDGIDEL 178 (188)
T ss_dssp HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHH
T ss_pred HHhccccccCccccceEEEEecCCCCCHHHH
Confidence 44445543 35888999999999964
No 198
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.12 E-value=3e-10 Score=98.82 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=69.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCC--C
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQV--T 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v--~ 74 (170)
+.||||||++.|.......+.++|++++|+|.++ +++.+.+. ++ .. -++| ++||+||+|+.+ ...+ .
T Consensus 53 i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~-il----~~-lgi~~iIVVlNKiDlv~-~~~~~~v 125 (614)
T PRK10512 53 LGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLA-IL----QL-TGNPMLTVALTKADRVD-EARIAEV 125 (614)
T ss_pred EEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHH-HH----HH-cCCCeEEEEEECCccCC-HHHHHHH
Confidence 4699999999997766777899999999999987 55655542 22 22 1355 579999999865 2222 1
Q ss_pred HHHHHHHHHhcCC--CeEEEcccCCcchhhhH
Q psy17235 75 EADMENFWSRRSS--RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 75 ~~~~~~~a~~~~~--~~~~e~Sa~~~~~v~~~ 104 (170)
.++...+....++ ..++++||++|.|+++.
T Consensus 126 ~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L 157 (614)
T PRK10512 126 RRQVKAVLREYGFAEAKLFVTAATEGRGIDAL 157 (614)
T ss_pred HHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHH
Confidence 2445556555553 35789999999999875
No 199
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.11 E-value=6.7e-10 Score=91.91 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=73.2
Q ss_pred CeEEecCCccccc----cchh---hhccCCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERVA----SITS---SYYKFAEAAILVFSLD---NAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~~----~~~~---~~~~~ad~iilv~D~t---~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~ 67 (170)
+.|+||||...-. .+.. ..++.+|++++|+|++ +.++++.+..|+.++..+. .+.|++||+||+|+.
T Consensus 209 i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 209 FVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred EEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 4689999964311 1111 2477899999999998 5677888888888887765 468999999999986
Q ss_pred CCCCCCCHHHHHHHHHhcCCC-eEEEcccCCcchhhhH
Q psy17235 68 GTTPQVTEADMENFWSRRSSR-RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 68 ~~~~~v~~~~~~~~a~~~~~~-~~~e~Sa~~~~~v~~~ 104 (170)
. ...+ .+....+.+..+.. .++.+||+++.++++.
T Consensus 289 ~-~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeL 324 (390)
T PRK12298 289 D-EEEA-EERAKAIVEALGWEGPVYLISAASGLGVKEL 324 (390)
T ss_pred C-hHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHH
Confidence 5 3222 23444555554432 4678999999999985
No 200
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.10 E-value=4.1e-10 Score=99.68 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=65.7
Q ss_pred CeEEecCCcc----------ccccch-hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235 1 MQLWDTGGME----------RVASIT-SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT 69 (170)
Q Consensus 1 l~iwDt~G~e----------~~~~~~-~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~ 69 (170)
+.+|||||.. .|..++ ..+++.+|++++|+|.++..++..+. ++..+.. .+.|++||+||+|+.+
T Consensus 500 ~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~--~~~piIiV~NK~DL~~- 575 (712)
T PRK09518 500 WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD--AGRALVLVFNKWDLMD- 575 (712)
T ss_pred EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEEchhcCC-
Confidence 3689999953 233333 33478999999999999998888765 3344433 3789999999999865
Q ss_pred CCCCCHHHHHH-HHHhc---CCCeEEEcccCCcchhhhHH
Q psy17235 70 TPQVTEADMEN-FWSRR---SSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 70 ~~~v~~~~~~~-~a~~~---~~~~~~e~Sa~~~~~v~~~~ 105 (170)
... .+.... +...+ .....+.+||++|.||.+.+
T Consensus 576 ~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~ 613 (712)
T PRK09518 576 EFR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLA 613 (712)
T ss_pred hhH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHH
Confidence 211 111211 12211 22235678999999999763
No 201
>PRK00089 era GTPase Era; Reviewed
Probab=99.10 E-value=4.5e-10 Score=89.36 Aligned_cols=100 Identities=17% Similarity=0.100 Sum_probs=67.9
Q ss_pred CeEEecCCcccc--------ccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERV--------ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~--------~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+.+|||||.... .......+.++|++++|+|.+++.+- .....+..+.. .+.|+++|+||+|+.. .+.
T Consensus 55 i~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~--~~~pvilVlNKiDl~~-~~~ 130 (292)
T PRK00089 55 IIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLKK--VKTPVILVLNKIDLVK-DKE 130 (292)
T ss_pred EEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh--cCCCEEEEEECCcCCC-CHH
Confidence 358999996432 22334467899999999999983221 11122222222 3689999999999974 233
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
........+.+..+...++++||+++.|+++.
T Consensus 131 ~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L 162 (292)
T PRK00089 131 ELLPLLEELSELMDFAEIVPISALKGDNVDEL 162 (292)
T ss_pred HHHHHHHHHHhhCCCCeEEEecCCCCCCHHHH
Confidence 33445666666667677889999999999975
No 202
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.10 E-value=5.8e-10 Score=93.16 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=67.5
Q ss_pred CeEEecCCc--------cccccchhhhccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCCCCCC
Q psy17235 1 MQLWDTGGM--------ERVASITSSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDLEGTT 70 (170)
Q Consensus 1 l~iwDt~G~--------e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~ 70 (170)
+.+|||||. +.+......+++.+|++++|+|.++..+... +..|+.+ .+.|+++|+||+|+.+ .
T Consensus 49 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~-----~~~piilVvNK~D~~~-~ 122 (429)
T TIGR03594 49 FILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK-----SGKPVILVANKIDGKK-E 122 (429)
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----hCCCEEEEEECccCCc-c
Confidence 469999996 4455566778899999999999988655443 3344432 3689999999999865 2
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
... ..+ ...+|+..++++||++|.|+.+.
T Consensus 123 ~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~l 151 (429)
T TIGR03594 123 DAV----AAE-FYSLGFGEPIPISAEHGRGIGDL 151 (429)
T ss_pred ccc----HHH-HHhcCCCCeEEEeCCcCCChHHH
Confidence 221 122 34567766889999999999876
No 203
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.07 E-value=4.7e-10 Score=93.37 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=67.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC--CC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ--VT 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~--v~ 74 (170)
+.+|||||++.|...+......+|++++|+|.++. ++.+.+. .+. .....|+++++||+|+.+ ... ..
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~----~l~-~~gi~~iIVvvNK~Dl~~-~~~~~~~ 155 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM----ALE-IIGIKNIVIVQNKIDLVS-KEKALEN 155 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH----HHH-HcCCCeEEEEEEccccCC-HHHHHHH
Confidence 46999999999988888888899999999999963 3444333 222 222346899999999865 211 12
Q ss_pred HHHHHHHHHhcC--CCeEEEcccCCcchhhhH
Q psy17235 75 EADMENFWSRRS--SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 75 ~~~~~~~a~~~~--~~~~~e~Sa~~~~~v~~~ 104 (170)
.++...+..... ...++++||++|.|+++.
T Consensus 156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L 187 (406)
T TIGR03680 156 YEEIKEFVKGTVAENAPIIPVSALHNANIDAL 187 (406)
T ss_pred HHHHHhhhhhcccCCCeEEEEECCCCCChHHH
Confidence 234444444331 224788999999999865
No 204
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.07 E-value=6.7e-10 Score=82.81 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=64.1
Q ss_pred CeEEecCCc----------cccccchhhhccCC---cEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235 1 MQLWDTGGM----------ERVASITSSYYKFA---EAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSD 65 (170)
Q Consensus 1 l~iwDt~G~----------e~~~~~~~~~~~~a---d~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~D 65 (170)
+.||||||. +.+..+...|++.+ +++++|+|.+++.+... +..|+ .. .+.|+++++||+|
T Consensus 72 l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~--~~~~~iiv~nK~D 146 (196)
T PRK00454 72 LRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---KE--YGIPVLIVLTKAD 146 (196)
T ss_pred EEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH---HH--cCCcEEEEEECcc
Confidence 468999994 45555666677755 67888999887655433 22332 21 3689999999999
Q ss_pred CCCCCCC--CCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 66 LEGTTPQ--VTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 66 l~~~~~~--v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
+.+ ... ...+++..+....+. .++++||+++.|+.+.+
T Consensus 147 l~~-~~~~~~~~~~i~~~l~~~~~-~~~~~Sa~~~~gi~~l~ 186 (196)
T PRK00454 147 KLK-KGERKKQLKKVRKALKFGDD-EVILFSSLKKQGIDELR 186 (196)
T ss_pred cCC-HHHHHHHHHHHHHHHHhcCC-ceEEEEcCCCCCHHHHH
Confidence 865 222 122334444443333 56789999999999763
No 205
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.06 E-value=8.7e-10 Score=93.41 Aligned_cols=101 Identities=12% Similarity=0.072 Sum_probs=66.9
Q ss_pred CeEEecCCccc----cccchh---hhccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhC------------CCCeE
Q psy17235 1 MQLWDTGGMER----VASITS---SYYKFAEAAILVFSLDNA----ASFHVLSQHLLEIVTYA------------ENAKI 57 (170)
Q Consensus 1 l~iwDt~G~e~----~~~~~~---~~~~~ad~iilv~D~t~~----~Sf~~~~~~~~~i~~~~------------~~~pv 57 (170)
|.||||||... ...+.. .+++++|++|+|+|+++. +.+..+..|..++..+. .+.|+
T Consensus 208 f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~ 287 (500)
T PRK12296 208 FTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPR 287 (500)
T ss_pred EEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCE
Confidence 47899999532 112222 245689999999999863 45666666666665443 36899
Q ss_pred EEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 58 FLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 58 vlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
|||+||+|+.+ .+.+.. .........+. .++++||+++.|+.+.
T Consensus 288 IVVlNKiDL~d-a~el~e-~l~~~l~~~g~-~Vf~ISA~tgeGLdEL 331 (500)
T PRK12296 288 LVVLNKIDVPD-ARELAE-FVRPELEARGW-PVFEVSAASREGLREL 331 (500)
T ss_pred EEEEECccchh-hHHHHH-HHHHHHHHcCC-eEEEEECCCCCCHHHH
Confidence 99999999975 333222 22222334455 4778999999999987
No 206
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.06 E-value=7.4e-10 Score=92.73 Aligned_cols=100 Identities=17% Similarity=0.078 Sum_probs=65.3
Q ss_pred CeEEecCCccc----------cccch-hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235 1 MQLWDTGGMER----------VASIT-SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT 69 (170)
Q Consensus 1 l~iwDt~G~e~----------~~~~~-~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~ 69 (170)
+.+|||||... |..++ ..+++.+|++|+|+|.+++.+..... +...+.. .+.|+++|+||+|+.+
T Consensus 223 ~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~--~~~~~ivv~NK~Dl~~- 298 (435)
T PRK00093 223 YTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE--AGRALVIVVNKWDLVD- 298 (435)
T ss_pred EEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCcEEEEEECccCCC-
Confidence 46899999643 22222 23678999999999999988876653 3333333 3689999999999864
Q ss_pred CCCCCHHHHHHHHH---hcCCCeEEEcccCCcchhhhHH
Q psy17235 70 TPQVTEADMENFWS---RRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 70 ~~~v~~~~~~~~a~---~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
... ..+....+.. ..+...++++||++|.|+.+.+
T Consensus 299 ~~~-~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~ 336 (435)
T PRK00093 299 EKT-MEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLL 336 (435)
T ss_pred HHH-HHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHH
Confidence 211 1111112222 2233457889999999999864
No 207
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.06 E-value=8e-10 Score=92.14 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=63.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC--C
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV--T 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v--~ 74 (170)
+.||||||++.|....-.....+|++++|+|.+++ ++.+.+..+ .. ....|+++|+||+|+.+ .... .
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l----~~-~~i~~iiVVlNK~Dl~~-~~~~~~~ 160 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL----DI-IGIKNIVIVQNKIDLVS-KERALEN 160 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH----HH-cCCCcEEEEEEeecccc-chhHHHH
Confidence 46999999998765444444567999999999953 444443322 11 12346899999999865 2221 1
Q ss_pred HHHHHHHHHhcC--CCeEEEcccCCcchhhhH
Q psy17235 75 EADMENFWSRRS--SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 75 ~~~~~~~a~~~~--~~~~~e~Sa~~~~~v~~~ 104 (170)
.++...+.+... ...++++||++|.|+++.
T Consensus 161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L 192 (411)
T PRK04000 161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDAL 192 (411)
T ss_pred HHHHHHHhccccCCCCeEEEEECCCCcCHHHH
Confidence 234445554321 235788999999999865
No 208
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.04 E-value=1.2e-09 Score=96.73 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=63.8
Q ss_pred CeEEecCCccc--------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMER--------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~--------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+.+|||||.+. +......+++.+|++|+|+|.++.-+... ..|...+.. .+.|+++|+||+|+.. ..
T Consensus 325 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~~-~~- 399 (712)
T PRK09518 325 FKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQA-SE- 399 (712)
T ss_pred EEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECccccc-ch-
Confidence 46899999763 33445667899999999999987432211 234444443 4799999999999864 21
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.....+. ..+....+++||++|.||.+.
T Consensus 400 ---~~~~~~~-~lg~~~~~~iSA~~g~GI~eL 427 (712)
T PRK09518 400 ---YDAAEFW-KLGLGEPYPISAMHGRGVGDL 427 (712)
T ss_pred ---hhHHHHH-HcCCCCeEEEECCCCCCchHH
Confidence 1222222 234434457999999999976
No 209
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.3e-09 Score=90.07 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=73.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
|.|.|||||+.|..|+..-..=+|.+|||+|.+| |++.+.+... +. .++|+++..||+|.++ ..++.
T Consensus 57 itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~ha----k~--a~vP~iVAiNKiDk~~----~np~~ 126 (509)
T COG0532 57 ITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHA----KA--AGVPIVVAINKIDKPE----ANPDK 126 (509)
T ss_pred EEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHH----HH--CCCCEEEEEecccCCC----CCHHH
Confidence 4689999999999999988899999999999998 6777665322 22 4899999999999875 22232
Q ss_pred HHHHHHhcCC--------CeEEEcccCCcchhhhHHHHH
Q psy17235 78 MENFWSRRSS--------RRFKPQEVVEPQEVVEAEQVQ 108 (170)
Q Consensus 78 ~~~~a~~~~~--------~~~~e~Sa~~~~~v~~~~~~~ 108 (170)
...-..++|+ ..|.+.||++|+|+++...+.
T Consensus 127 v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~i 165 (509)
T COG0532 127 VKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELI 165 (509)
T ss_pred HHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHH
Confidence 2222223333 468999999999999874333
No 210
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.03 E-value=8.8e-10 Score=95.58 Aligned_cols=95 Identities=9% Similarity=0.049 Sum_probs=68.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC-CHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV-TEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v-~~~~~~ 79 (170)
+.||||||+..|...+..+++.+|++++|+|.++. .......|+..+... ++|+++|+||+|+.+ .+.. ..++..
T Consensus 66 inlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~--~ip~IVviNKiD~~~-a~~~~v~~ei~ 141 (594)
T TIGR01394 66 INIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL--GLKPIVVINKIDRPS-ARPDEVVDEVF 141 (594)
T ss_pred EEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC--CCCEEEEEECCCCCC-cCHHHHHHHHH
Confidence 46999999999999999999999999999999873 234455666666553 689999999999865 3221 123344
Q ss_pred HHHHhc-------CCCeEEEcccCCcch
Q psy17235 80 NFWSRR-------SSRRFKPQEVVEPQE 100 (170)
Q Consensus 80 ~~a~~~-------~~~~~~e~Sa~~~~~ 100 (170)
.+.... .++ ++.+||++|.+
T Consensus 142 ~l~~~~g~~~e~l~~p-vl~~SA~~g~~ 168 (594)
T TIGR01394 142 DLFAELGADDEQLDFP-IVYASGRAGWA 168 (594)
T ss_pred HHHHhhccccccccCc-EEechhhcCcc
Confidence 443322 333 67789999964
No 211
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=99.03 E-value=2.3e-09 Score=81.71 Aligned_cols=70 Identities=66% Similarity=0.976 Sum_probs=66.2
Q ss_pred cchhhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q psy17235 98 PQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELK 167 (170)
Q Consensus 98 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 167 (170)
+..|.++..-++..+..|+.+++.++.++.+|+.+|+.+|+++|.+.+|++.||||.+...|++|++.||
T Consensus 150 ~~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~~Rv~~fk~~lve~aE~~ik~Ak~~~~~l~~~~~~lk 219 (219)
T cd07621 150 NKDVHAAEAAQQEACEKFESMSESAKQELLDFKTRRVAAFRKNLVELAELEIKHAKAQIQLLKNCLAALK 219 (219)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4667778778888999999999999999999999999999999999999999999999999999999987
No 212
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=99.01 E-value=3.7e-09 Score=80.05 Aligned_cols=70 Identities=56% Similarity=0.897 Sum_probs=66.4
Q ss_pred cchhhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q psy17235 98 PQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELK 167 (170)
Q Consensus 98 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 167 (170)
|..|.+++..++.+++.|+++++.++.++.+|+.+|+.+|+++|.+.+|++.||||.+...|++||++||
T Consensus 149 ~kev~~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~~~~~l~ 218 (218)
T cd07662 149 NKDVLQAETTQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQSCLAVLN 218 (218)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677777888999999999999999999999999999999999999999999999999999999999986
No 213
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.99 E-value=2.4e-09 Score=81.55 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=52.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~ 67 (170)
+.+|||||++.|...+..++..+|++++|+|.++..++.. ..|+..... .+.|+++|+||+|+.
T Consensus 73 i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 73 FNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccC
Confidence 4799999999998888899999999999999998877643 345444433 358999999999975
No 214
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.99 E-value=4.3e-09 Score=81.41 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=64.2
Q ss_pred CeEEecCCccccc-------cchhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHH------------------------
Q psy17235 1 MQLWDTGGMERVA-------SITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEI------------------------ 48 (170)
Q Consensus 1 l~iwDt~G~e~~~-------~~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i------------------------ 48 (170)
+++|||||+.... .....+++++|++++|+|.+++. ....+...+...
T Consensus 49 i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~ 128 (233)
T cd01896 49 IQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINIT 128 (233)
T ss_pred EEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEe
Confidence 4789999985432 12345789999999999998865 344333333210
Q ss_pred -----------------Hhh-------------------------CCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcC
Q psy17235 49 -----------------VTY-------------------------AENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRS 86 (170)
Q Consensus 49 -----------------~~~-------------------------~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~ 86 (170)
.++ ...+|+++|+||+|+.. .+++..++..
T Consensus 129 ~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~------~~~~~~~~~~-- 200 (233)
T cd01896 129 STVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS------IEELDLLARQ-- 200 (233)
T ss_pred ccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCC------HHHHHHHhcC--
Confidence 000 02369999999999743 4566666654
Q ss_pred CCeEEEcccCCcchhhhH
Q psy17235 87 SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 87 ~~~~~e~Sa~~~~~v~~~ 104 (170)
+.++++||+++.|+++.
T Consensus 201 -~~~~~~SA~~g~gi~~l 217 (233)
T cd01896 201 -PNSVVISAEKGLNLDEL 217 (233)
T ss_pred -CCEEEEcCCCCCCHHHH
Confidence 34778899999999975
No 215
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.97 E-value=5.6e-10 Score=93.92 Aligned_cols=98 Identities=18% Similarity=0.267 Sum_probs=70.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHH-------HHHHHHHHHHhhCCCC-eEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-------VLSQHLLEIVTYAENA-KIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~-------~~~~~~~~i~~~~~~~-pvvlvgnK~Dl~~~~~~ 72 (170)
+.|.|||||+.|.......++.+|++|+|+|.++ .+|+ ..+..+..... .++ ++|++.||+|+.+ ..
T Consensus 87 i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKmD~~~--~~ 161 (447)
T PLN00043 87 CTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT--LGVKQMICCCNKMDATT--PK 161 (447)
T ss_pred EEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcccCCc--hh
Confidence 4689999999998888888999999999999987 3343 22222222222 356 4788999999752 11
Q ss_pred C-------CHHHHHHHHHhcCC----CeEEEcccCCcchhhh
Q psy17235 73 V-------TEADMENFWSRRSS----RRFKPQEVVEPQEVVE 103 (170)
Q Consensus 73 v-------~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~ 103 (170)
. ..+++..+.+..|+ ..|+++||.+|.|+.+
T Consensus 162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 13567777887774 3588999999999875
No 216
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=98.96 E-value=6.4e-09 Score=79.11 Aligned_cols=70 Identities=53% Similarity=0.876 Sum_probs=65.9
Q ss_pred cchhhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q psy17235 98 PQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELK 167 (170)
Q Consensus 98 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 167 (170)
+..|.+++.-++.+++.|..+++.++.++.+|+.+|+.+|++++.+.+|++.||+|.+...|++|++.||
T Consensus 149 ~kev~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~~~~~~~~ 218 (218)
T cd07663 149 SKDVKQAEAHQQECCQKFEKLSESAKQELISFKRRRVAAFRKNLIEMTELEIKHAKNNVSLLQSCIDLFK 218 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5567777778888999999999999999999999999999999999999999999999999999999987
No 217
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.95 E-value=6.6e-09 Score=83.87 Aligned_cols=67 Identities=22% Similarity=0.244 Sum_probs=56.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----------~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~ 67 (170)
+.+||++||...+..|.+|+.+++++|+|+|+++. ..+......+..+.+.. .+.|++|++||.|+-
T Consensus 163 ~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f 241 (317)
T cd00066 163 FRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLF 241 (317)
T ss_pred EEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHH
Confidence 46899999999999999999999999999999974 45655556666665544 689999999999964
No 218
>PRK10218 GTP-binding protein; Provisional
Probab=98.94 E-value=4.1e-09 Score=91.51 Aligned_cols=97 Identities=10% Similarity=0.038 Sum_probs=66.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-CCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ-VTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~-v~~~~~~ 79 (170)
+.+|||||+..|...+..+++.+|++|+|+|.++....+ ...++..... .++|++++.||+|+.+ .+. -..++..
T Consensus 70 inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~--~gip~IVviNKiD~~~-a~~~~vl~ei~ 145 (607)
T PRK10218 70 INIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA--YGLKPIVVINKVDRPG-ARPDWVVDQVF 145 (607)
T ss_pred EEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH--cCCCEEEEEECcCCCC-CchhHHHHHHH
Confidence 479999999999999999999999999999998754333 2333333333 3789999999999875 222 1123333
Q ss_pred HHHHhcCC------CeEEEcccCCcchh
Q psy17235 80 NFWSRRSS------RRFKPQEVVEPQEV 101 (170)
Q Consensus 80 ~~a~~~~~------~~~~e~Sa~~~~~v 101 (170)
.+....+. ..++.+||++|.+.
T Consensus 146 ~l~~~l~~~~~~~~~PVi~~SA~~G~~~ 173 (607)
T PRK10218 146 DLFVNLDATDEQLDFPIVYASALNGIAG 173 (607)
T ss_pred HHHhccCccccccCCCEEEeEhhcCccc
Confidence 33322221 13667899999753
No 219
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.94 E-value=4.6e-09 Score=81.48 Aligned_cols=65 Identities=22% Similarity=0.144 Sum_probs=53.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.+|||||+..|...+..+++.+|++++|+|.++..+. ....|+..+... ++|+++++||+|+..
T Consensus 66 i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~~ 130 (237)
T cd04168 66 VNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRAG 130 (237)
T ss_pred EEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECccccC
Confidence 46999999999998899999999999999999987554 334555555443 789999999999865
No 220
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.89 E-value=1.2e-08 Score=90.80 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=72.0
Q ss_pred CeEEecCCccccccc----------hhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASI----------TSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~----------~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+++|||||+..+... ...|+ ..+|++++|+|.++.+.- ..|..++.+. +.|++++.||+|+.+
T Consensus 52 i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~--giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIAE 126 (772)
T ss_pred EEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc--CCCEEEEEEchhhhh
Confidence 479999999876432 23343 489999999999886542 2344555443 699999999999875
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 69 TTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 69 ~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+.+. .+.+++.+.+|++ ++++||++++|+++..
T Consensus 127 -~~~i~-id~~~L~~~LG~p-VvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 127 -KQNIR-IDIDALSARLGCP-VIPLVSTRGRGIEALK 160 (772)
T ss_pred -ccCcH-HHHHHHHHHhCCC-EEEEEeecCCCHHHHH
Confidence 45553 4567888889986 5679999999999863
No 221
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.89 E-value=8.9e-09 Score=81.24 Aligned_cols=65 Identities=22% Similarity=0.184 Sum_probs=49.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.+|||||+..|......+++.+|++|+|+|.++...-. ...++..... .++|+++++||+|+..
T Consensus 73 i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D~~~ 137 (267)
T cd04169 73 INLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLDREG 137 (267)
T ss_pred EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCccCC
Confidence 479999999999887777899999999999998754322 2334333322 4789999999999865
No 222
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.87 E-value=1.2e-08 Score=76.17 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=59.9
Q ss_pred cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHH-----HhcC
Q psy17235 12 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFW-----SRRS 86 (170)
Q Consensus 12 ~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a-----~~~~ 86 (170)
+..++..+++++|++++|+|++++.. .|...+.....+.|+++|+||+|+.. .....+....+. +..+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLLP--KDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcCC--CCCCHHHHHHHHHHHHHhhcC
Confidence 46778889999999999999998652 23333322235789999999999864 233344444444 2333
Q ss_pred C--CeEEEcccCCcchhhhH
Q psy17235 87 S--RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 87 ~--~~~~e~Sa~~~~~v~~~ 104 (170)
. ..++.+||+++.|+++.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL 116 (190)
T cd01855 97 LKPKDVILISAKKGWGVEEL 116 (190)
T ss_pred CCcccEEEEECCCCCCHHHH
Confidence 3 34778999999999976
No 223
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.86 E-value=2.1e-08 Score=77.15 Aligned_cols=100 Identities=18% Similarity=0.104 Sum_probs=62.8
Q ss_pred CeEEecCCccccccchhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC--CHH
Q psy17235 1 MQLWDTGGMERVASITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV--TEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v--~~~ 76 (170)
+.+.||||++.|.......+ ..+|++++|+|.+...+- ....++..+.. .++|+++|.||+|+.+ ...+ ..+
T Consensus 86 i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~--~~ip~ivvvNK~D~~~-~~~~~~~~~ 161 (224)
T cd04165 86 VTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALA--LNIPVFVVVTKIDLAP-ANILQETLK 161 (224)
T ss_pred EEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHH--cCCCEEEEEECccccC-HHHHHHHHH
Confidence 36899999998855333333 368999999998765432 22233333333 3689999999999854 2111 112
Q ss_pred HHHHHHHh-------------------------cCCCeEEEcccCCcchhhhH
Q psy17235 77 DMENFWSR-------------------------RSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~-------------------------~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+...+.+. .....++.+||.+|.|+++.
T Consensus 162 ~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L 214 (224)
T cd04165 162 DLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLL 214 (224)
T ss_pred HHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHH
Confidence 22222221 11336778999999999976
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.85 E-value=7.1e-09 Score=86.00 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=62.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCCeEE-EEeeCCCCCCCCCCCC--
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIF-LCGNKSDLEGTTPQVT-- 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~~~~pvv-lvgnK~Dl~~~~~~v~-- 74 (170)
+.||||||++.|..........+|++++|+|.++. ++.+.+ ..+... ++|.+ ++.||+|+.+ .....
T Consensus 77 ~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l----~~~~~~--gi~~iIvvvNK~Dl~~-~~~~~~~ 149 (394)
T TIGR00485 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHI----LLARQV--GVPYIVVFLNKCDMVD-DEELLEL 149 (394)
T ss_pred EEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHHHc--CCCEEEEEEEecccCC-HHHHHHH
Confidence 46899999999865444455678999999999873 343332 223222 56655 6899999865 22211
Q ss_pred -HHHHHHHHHhcCC----CeEEEcccCCcch
Q psy17235 75 -EADMENFWSRRSS----RRFKPQEVVEPQE 100 (170)
Q Consensus 75 -~~~~~~~a~~~~~----~~~~e~Sa~~~~~ 100 (170)
.++...+.+.++. ..++.+||.++.+
T Consensus 150 ~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~ 180 (394)
T TIGR00485 150 VEMEVRELLSEYDFPGDDTPIIRGSALKALE 180 (394)
T ss_pred HHHHHHHHHHhcCCCccCccEEECccccccc
Confidence 2456677777764 3577899998854
No 225
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.85 E-value=1.3e-08 Score=73.09 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=62.5
Q ss_pred CeEEecCCc----------cccccchhhhccC---CcEEEEEEeCCChhhH--HHHHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235 1 MQLWDTGGM----------ERVASITSSYYKF---AEAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNKSD 65 (170)
Q Consensus 1 l~iwDt~G~----------e~~~~~~~~~~~~---ad~iilv~D~t~~~Sf--~~~~~~~~~i~~~~~~~pvvlvgnK~D 65 (170)
+.+|||||. +.+..+...|+.. .+++++++|.++..+. ..+..|+... +.|+++|+||+|
T Consensus 47 ~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D 121 (170)
T cd01876 47 FRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKAD 121 (170)
T ss_pred EEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchh
Confidence 368999993 3344555666654 5788999999876332 2334555432 589999999999
Q ss_pred CCCC-CCCCCHHHHHHHHH-hcCCCeEEEcccCCcchhhhH
Q psy17235 66 LEGT-TPQVTEADMENFWS-RRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 66 l~~~-~~~v~~~~~~~~a~-~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+... .............+ ....+.++++||+++.++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l 162 (170)
T cd01876 122 KLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDEL 162 (170)
T ss_pred cCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHH
Confidence 8541 11111122222332 234456779999999999876
No 226
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.85 E-value=9.7e-09 Score=84.28 Aligned_cols=90 Identities=12% Similarity=0.096 Sum_probs=68.5
Q ss_pred ccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH----HHHh
Q psy17235 9 MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN----FWSR 84 (170)
Q Consensus 9 ~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~----~a~~ 84 (170)
.+.|..+...+++.++++++|+|+.+... .|.+++.+...+.|+++|+||+|+.. +.+..++... +++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~~~piilV~NK~DLl~--k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVGGNPVLLVGNKIDLLP--KSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhCCCCEEEEEEchhhCC--CCCCHHHHHHHHHHHHHH
Confidence 45688888899999999999999987652 46666666656789999999999864 3455555444 4666
Q ss_pred cCCC--eEEEcccCCcchhhhHH
Q psy17235 85 RSSR--RFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 85 ~~~~--~~~e~Sa~~~~~v~~~~ 105 (170)
.++. .++.+||+++.|+++.+
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~ 145 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELL 145 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHH
Confidence 7763 47789999999999763
No 227
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.84 E-value=5.9e-09 Score=84.96 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=56.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----------~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~ 67 (170)
+.+||++||...+..|.+|+.+++++|+|.|+++. ..+......+..+.+.. .++|++|++||.|+-
T Consensus 186 ~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~ 264 (342)
T smart00275 186 FRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLF 264 (342)
T ss_pred EEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhH
Confidence 46899999999999999999999999999999973 45666666666666544 789999999999974
No 228
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.75 E-value=4.4e-08 Score=73.88 Aligned_cols=98 Identities=17% Similarity=0.123 Sum_probs=66.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCC---CHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQV---TEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v---~~~ 76 (170)
+.+.||||+..|.......+..+|++++|+|.+..-+-. ....+..+... ++| +|++.||+|+.. .... ..+
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~--~~~~iIvviNK~D~~~-~~~~~~~~~~ 142 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV--GVPYIVVFLNKADMVD-DEELLELVEM 142 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCcEEEEEeCCCCCC-cHHHHHHHHH
Confidence 358999999988776667788999999999998643222 22233333332 566 778999999854 2221 223
Q ss_pred HHHHHHHhcCC----CeEEEcccCCcchhh
Q psy17235 77 DMENFWSRRSS----RRFKPQEVVEPQEVV 102 (170)
Q Consensus 77 ~~~~~a~~~~~----~~~~e~Sa~~~~~v~ 102 (170)
+...+....+. ..++.+||++|.|+.
T Consensus 143 ~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 143 EVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 45556555554 458889999999875
No 229
>PRK12736 elongation factor Tu; Reviewed
Probab=98.73 E-value=3.6e-08 Score=81.87 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=62.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCCC--
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQVT-- 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v~-- 74 (170)
+.||||||++.|....-.-...+|++++|+|.++. ++.+. +..+... ++| +|++.||+|+.+ ...+.
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~----~~~~~~~--g~~~~IvviNK~D~~~-~~~~~~~ 149 (394)
T PRK12736 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH----ILLARQV--GVPYLVVFLNKVDLVD-DEELLEL 149 (394)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHH----HHHHHHc--CCCEEEEEEEecCCcc-hHHHHHH
Confidence 36899999998866555556789999999999863 33333 2233332 577 678999999864 22221
Q ss_pred -HHHHHHHHHhcCC----CeEEEcccCCcc
Q psy17235 75 -EADMENFWSRRSS----RRFKPQEVVEPQ 99 (170)
Q Consensus 75 -~~~~~~~a~~~~~----~~~~e~Sa~~~~ 99 (170)
.++...+.+..+. ..++.+||++|.
T Consensus 150 i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 150 VEMEVRELLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence 2355566666654 357889999984
No 230
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.72 E-value=3.5e-08 Score=82.19 Aligned_cols=101 Identities=19% Similarity=0.153 Sum_probs=64.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC----CHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV----TEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v----~~~ 76 (170)
+.||||||++.|......-+..+|++++|+|.+....-+....|. .+. .....+++++.||+|+.+ ...- ..+
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~-~~~~~~iivviNK~D~~~-~~~~~~~~i~~ 158 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IAS-LLGIRHVVLAVNKMDLVD-YDEEVFENIKK 158 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHH-HcCCCcEEEEEEeccccc-chHHHHHHHHH
Confidence 468999999999665556688999999999987643221111121 112 212346889999999864 2211 112
Q ss_pred HHHHHHHhcCCC--eEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRRSSR--RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~--~~~e~Sa~~~~~v~~~ 104 (170)
+...+.+..+.. .++++||++|.|+.+.
T Consensus 159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 159 DYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 333344555542 4888999999999863
No 231
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.71 E-value=3.9e-08 Score=77.73 Aligned_cols=93 Identities=13% Similarity=0.025 Sum_probs=60.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
+.+|||||+..|...+..+++.+|++++|+|.++...-.. ...+..+.. .++|++++.||+|+.+....-..++.+.
T Consensus 66 i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~--~~~p~ivviNK~D~~~a~~~~~~~~l~~ 142 (270)
T cd01886 66 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR--YNVPRIAFVNKMDRTGADFFRVVEQIRE 142 (270)
T ss_pred EEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence 3689999999888888999999999999999987533222 223333333 3689999999999865111112233333
Q ss_pred HHHhcCCCeEEEcccC
Q psy17235 81 FWSRRSSRRFKPQEVV 96 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~ 96 (170)
......++..++.|+.
T Consensus 143 ~l~~~~~~~~~Pisa~ 158 (270)
T cd01886 143 KLGANPVPLQLPIGEE 158 (270)
T ss_pred HhCCCceEEEeccccC
Confidence 3333334555666665
No 232
>KOG0077|consensus
Probab=98.69 E-value=3.7e-08 Score=71.51 Aligned_cols=76 Identities=16% Similarity=0.317 Sum_probs=65.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++-+|.+|+..-+..|..|+..+|++++.+|..|.+.|...+..++.+.... .++|+++.|||+|.+. .+++++.
T Consensus 66 ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~---a~se~~l 142 (193)
T KOG0077|consen 66 FTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY---AASEDEL 142 (193)
T ss_pred EEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC---cccHHHH
Confidence 4678999999989999999999999999999999999999888887776555 7999999999999976 5566654
Q ss_pred H
Q psy17235 79 E 79 (170)
Q Consensus 79 ~ 79 (170)
+
T Consensus 143 ~ 143 (193)
T KOG0077|consen 143 R 143 (193)
T ss_pred H
Confidence 3
No 233
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.68 E-value=8.4e-08 Score=65.97 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=60.7
Q ss_pred ccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEE
Q psy17235 13 ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFK 91 (170)
Q Consensus 13 ~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~ 91 (170)
..+...++++++++++||+.++++|++.+ |.+.+.... .++|.+++|||.|+.+ .+.+..+++..+ .
T Consensus 37 ~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~-~~~~~~~~~~~~---------~ 104 (124)
T smart00010 37 DVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEE-ERQVATEEGLEF---------A 104 (124)
T ss_pred hhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHh-hCcCCHHHHHHH---------H
Confidence 34567788999999999999999999876 888776655 6789999999999865 446665555433 3
Q ss_pred EcccCCcchhh
Q psy17235 92 PQEVVEPQEVV 102 (170)
Q Consensus 92 e~Sa~~~~~v~ 102 (170)
++|++++.|+.
T Consensus 105 ~~s~~~~~~~~ 115 (124)
T smart00010 105 ETSAKTPEEGE 115 (124)
T ss_pred HHhCCCcchhh
Confidence 57889998874
No 234
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.66 E-value=6.5e-08 Score=82.11 Aligned_cols=101 Identities=21% Similarity=0.197 Sum_probs=62.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH----H
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE----A 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~----~ 76 (170)
+.||||||++.|......-+..+|++++|+|.+....-.....| . +.......|+||+.||+|+.+ ...-.. +
T Consensus 109 i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~-l~~~lg~~~iIvvvNKiD~~~-~~~~~~~~i~~ 185 (474)
T PRK05124 109 FIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-F-IATLLGIKHLVVAVNKMDLVD-YSEEVFERIRE 185 (474)
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-H-HHHHhCCCceEEEEEeecccc-chhHHHHHHHH
Confidence 46899999999865444457999999999998764211111111 1 111112347899999999864 222111 1
Q ss_pred HHHHHHHhcC---CCeEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRRS---SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~---~~~~~e~Sa~~~~~v~~~ 104 (170)
+...+.+..+ ...++.+||++|.|+.+.
T Consensus 186 ~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 186 DYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2223333433 245888999999999864
No 235
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.66 E-value=9e-08 Score=71.21 Aligned_cols=68 Identities=24% Similarity=0.361 Sum_probs=48.9
Q ss_pred CeEEecCCcccccc-chhh--hccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVAS-ITSS--YYKFAEAAILVFSLDN-AASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~-~~~~--~~~~ad~iilv~D~t~-~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~ 68 (170)
+++.|+||+++.+. +... +..++.|+|+|.|.+. +..+..+-.++-.+.... ..+|++|++||+|+..
T Consensus 51 ~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 51 LRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp ECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 46899999999876 3333 5889999999999974 556777766666654433 6799999999999865
No 236
>PRK13351 elongation factor G; Reviewed
Probab=98.66 E-value=4.2e-08 Score=86.71 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=54.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.+|||||+..|...+..+++.+|++++|+|.++..+......| ..+.. .++|+++++||+|+..
T Consensus 75 i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~--~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 75 INLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR--YGIPRLIFINKMDRVG 139 (687)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh--cCCCEEEEEECCCCCC
Confidence 47999999999999999999999999999999998877765555 33333 3789999999999876
No 237
>PRK12289 GTPase RsgA; Reviewed
Probab=98.66 E-value=1.5e-07 Score=76.98 Aligned_cols=84 Identities=19% Similarity=0.185 Sum_probs=60.2
Q ss_pred chhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEc
Q psy17235 15 ITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQ 93 (170)
Q Consensus 15 ~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~ 93 (170)
+....+.++|.+++|+|++++. ++..+..|+..+.. .++|++||+||+|+.+ ...+ .........+|++ ++.+
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~-~~~~--~~~~~~~~~~g~~-v~~i 155 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVS-PTEQ--QQWQDRLQQWGYQ-PLFI 155 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCC-hHHH--HHHHHHHHhcCCe-EEEE
Confidence 4455688999999999999876 56667788776532 5799999999999864 2111 1112223456774 6678
Q ss_pred ccCCcchhhhH
Q psy17235 94 EVVEPQEVVEA 104 (170)
Q Consensus 94 Sa~~~~~v~~~ 104 (170)
||+++.|+++.
T Consensus 156 SA~tg~GI~eL 166 (352)
T PRK12289 156 SVETGIGLEAL 166 (352)
T ss_pred EcCCCCCHHHH
Confidence 99999999865
No 238
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.65 E-value=8.9e-08 Score=82.17 Aligned_cols=65 Identities=22% Similarity=0.216 Sum_probs=50.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.+|||||++.|......+++.+|++|+|+|.++.-.- ....++..... .++|+++++||+|+..
T Consensus 81 inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 81 INLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL--RDTPIFTFINKLDRDG 145 (526)
T ss_pred EEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh--cCCCEEEEEECCcccc
Confidence 47899999999988777789999999999999875322 23344433332 4799999999999865
No 239
>KOG1145|consensus
Probab=98.65 E-value=2.9e-07 Score=77.95 Aligned_cols=94 Identities=14% Similarity=0.235 Sum_probs=69.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+.|.|||||..|..|+..--.-+|++++|+...| |++.+.+..- .. .++|+|+..||||.++ -+++.
T Consensus 203 iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhA----k~--A~VpiVvAinKiDkp~----a~pek 272 (683)
T KOG1145|consen 203 ITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHA----KS--ANVPIVVAINKIDKPG----ANPEK 272 (683)
T ss_pred EEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHH----Hh--cCCCEEEEEeccCCCC----CCHHH
Confidence 4689999999999999998999999999999887 5666654322 11 5899999999999765 22232
Q ss_pred HH-HHH------HhcCC-CeEEEcccCCcchhhhH
Q psy17235 78 ME-NFW------SRRSS-RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~-~~a------~~~~~-~~~~e~Sa~~~~~v~~~ 104 (170)
.. ++. .++|. -..++.||++|+|++..
T Consensus 273 v~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L 307 (683)
T KOG1145|consen 273 VKRELLSQGIVVEDLGGDVQVIPISALTGENLDLL 307 (683)
T ss_pred HHHHHHHcCccHHHcCCceeEEEeecccCCChHHH
Confidence 22 222 23333 34788999999999965
No 240
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.65 E-value=1.1e-07 Score=75.85 Aligned_cols=80 Identities=13% Similarity=-0.006 Sum_probs=60.6
Q ss_pred hccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCC
Q psy17235 19 YYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVE 97 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 97 (170)
.+.++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+ . ........+....+.+ ++.+||++
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL~~-~--~~~~~~~~~~~~~g~~-v~~vSA~~ 148 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADLLD-D--EEEELELVEALALGYP-VLAVSAKT 148 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHCCC-h--HHHHHHHHHHHhCCCe-EEEEECCC
Confidence 378999999999999998 88888889877654 3799999999999965 2 1111223334445664 56789999
Q ss_pred cchhhhH
Q psy17235 98 PQEVVEA 104 (170)
Q Consensus 98 ~~~v~~~ 104 (170)
+.|+++.
T Consensus 149 g~gi~~L 155 (287)
T cd01854 149 GEGLDEL 155 (287)
T ss_pred CccHHHH
Confidence 9999875
No 241
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.64 E-value=2.3e-07 Score=77.41 Aligned_cols=98 Identities=18% Similarity=0.106 Sum_probs=72.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
|++.|||||-.|..-....+.-+.|.++|+|.+.----+.+.+.+-.+. .+..+|-|.||+||+. .-...-.++
T Consensus 78 lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle---~~LeIiPViNKIDLP~---Adpervk~e 151 (603)
T COG0481 78 LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPA---ADPERVKQE 151 (603)
T ss_pred EEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH---cCcEEEEeeecccCCC---CCHHHHHHH
Confidence 5789999999998877778899999999999987644444445544443 4788999999999987 222233344
Q ss_pred HHHhcCCC--eEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSR--RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~--~~~e~Sa~~~~~v~~~ 104 (170)
+-.-.|++ --..+|||+|.||++.
T Consensus 152 Ie~~iGid~~dav~~SAKtG~gI~~i 177 (603)
T COG0481 152 IEDIIGIDASDAVLVSAKTGIGIEDV 177 (603)
T ss_pred HHHHhCCCcchheeEecccCCCHHHH
Confidence 44455653 4667899999999964
No 242
>PRK12735 elongation factor Tu; Reviewed
Probab=98.64 E-value=8.7e-08 Score=79.63 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=64.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEE-EEeeCCCCCCCCCC---CCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNKSDLEGTTPQ---VTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvv-lvgnK~Dl~~~~~~---v~~~ 76 (170)
+.|+||||++.|......-+..+|++++|+|.++...- ....++..+.. .++|.+ ++.||+|+.+ ... .-.+
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~--~gi~~iivvvNK~Dl~~-~~~~~~~~~~ 152 (396)
T PRK12735 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ--VGVPYIVVFLNKCDMVD-DEELLELVEM 152 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH--cCCCeEEEEEEecCCcc-hHHHHHHHHH
Confidence 36899999998866555667789999999999874322 22233333332 357855 5799999864 211 1223
Q ss_pred HHHHHHHhcCC----CeEEEcccCCcchhh
Q psy17235 77 DMENFWSRRSS----RRFKPQEVVEPQEVV 102 (170)
Q Consensus 77 ~~~~~a~~~~~----~~~~e~Sa~~~~~v~ 102 (170)
+...+.+.++. ..|+.+||.++.|..
T Consensus 153 ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~ 182 (396)
T PRK12735 153 EVRELLSKYDFPGDDTPIIRGSALKALEGD 182 (396)
T ss_pred HHHHHHHHcCCCcCceeEEecchhccccCC
Confidence 56666666654 357889999997643
No 243
>PRK00098 GTPase RsgA; Reviewed
Probab=98.64 E-value=1.2e-07 Score=76.03 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=58.5
Q ss_pred ccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCc
Q psy17235 20 YKFAEAAILVFSLDNAASFHV-LSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEP 98 (170)
Q Consensus 20 ~~~ad~iilv~D~t~~~Sf~~-~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 98 (170)
..++|++++|+|++++.++.. +..|+..+.. .++|+++|+||+|+.+ ... ...+.....+..+.+ ++.+||+++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~-~~~-~~~~~~~~~~~~g~~-v~~vSA~~g 152 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLD-DLE-EARELLALYRAIGYD-VLELSAKEG 152 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCC-CHH-HHHHHHHHHHHCCCe-EEEEeCCCC
Confidence 389999999999999876554 4678776543 4799999999999964 221 122334445556764 668899999
Q ss_pred chhhhH
Q psy17235 99 QEVVEA 104 (170)
Q Consensus 99 ~~v~~~ 104 (170)
.|+++.
T Consensus 153 ~gi~~L 158 (298)
T PRK00098 153 EGLDEL 158 (298)
T ss_pred ccHHHH
Confidence 999875
No 244
>KOG0462|consensus
Probab=98.63 E-value=2.1e-07 Score=78.73 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=67.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC-CHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV-TEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v-~~~~~~ 79 (170)
|.+.|||||-.|..-....+.-++|+|+|+|.+.----+.+-+++-.+. .+..+|.|.||+|++. .++- -..+..
T Consensus 127 LNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe---~~L~iIpVlNKIDlp~-adpe~V~~q~~ 202 (650)
T KOG0462|consen 127 LNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE---AGLAIIPVLNKIDLPS-ADPERVENQLF 202 (650)
T ss_pred EEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH---cCCeEEEeeeccCCCC-CCHHHHHHHHH
Confidence 5789999999999888888999999999999987544343434433332 3688999999999987 2221 112222
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++-...+ ...+-+|||+|.|+.+.
T Consensus 203 ~lF~~~~-~~~i~vSAK~G~~v~~l 226 (650)
T KOG0462|consen 203 ELFDIPP-AEVIYVSAKTGLNVEEL 226 (650)
T ss_pred HHhcCCc-cceEEEEeccCccHHHH
Confidence 2222222 23556799999999963
No 245
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.63 E-value=9.2e-08 Score=84.61 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=51.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.+|||||+..|...+..+++.+|++++|+|.++....+...-| ..+.. .++|+++++||+|+..
T Consensus 77 i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 77 INIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR--YEVPRIAFVNKMDKTG 141 (689)
T ss_pred EEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH--cCCCEEEEEECCCCCC
Confidence 46899999999988888999999999999999987665543333 33333 3689999999999875
No 246
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.62 E-value=2.2e-07 Score=73.17 Aligned_cols=81 Identities=17% Similarity=0.098 Sum_probs=58.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
+.+|||||+..|...+..+++.+|++++|+|.++.........|. .+.. .++|++++.||+|+.. . ...+....
T Consensus 66 i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~--~~~p~iivvNK~D~~~-~--~~~~~~~~ 139 (268)
T cd04170 66 INLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE--AGIPRIIFINKMDRER-A--DFDKTLAA 139 (268)
T ss_pred EEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH--cCCCEEEEEECCccCC-C--CHHHHHHH
Confidence 468999999988888888999999999999999876655444442 2322 3689999999999875 2 22233444
Q ss_pred HHHhcCC
Q psy17235 81 FWSRRSS 87 (170)
Q Consensus 81 ~a~~~~~ 87 (170)
+...++.
T Consensus 140 l~~~~~~ 146 (268)
T cd04170 140 LQEAFGR 146 (268)
T ss_pred HHHHhCC
Confidence 4444554
No 247
>PRK13768 GTPase; Provisional
Probab=98.62 E-value=1.6e-07 Score=73.50 Aligned_cols=100 Identities=14% Similarity=0.022 Sum_probs=62.0
Q ss_pred eEEecCCcccc---ccchhhhccC-----CcEEEEEEeCCChhhHHHH--HHHHHHHHhhCCCCeEEEEeeCCCCCCCCC
Q psy17235 2 QLWDTGGMERV---ASITSSYYKF-----AEAAILVFSLDNAASFHVL--SQHLLEIVTYAENAKIFLCGNKSDLEGTTP 71 (170)
Q Consensus 2 ~iwDt~G~e~~---~~~~~~~~~~-----ad~iilv~D~t~~~Sf~~~--~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~ 71 (170)
-+|||||+.++ ...++.+++. ++++++|+|.+...+..+. ..|+........+.|+++|.||+|+.. ..
T Consensus 100 ~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~-~~ 178 (253)
T PRK13768 100 VLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS-EE 178 (253)
T ss_pred EEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC-ch
Confidence 58999998763 3444444443 8999999999764433222 233333222235799999999999865 22
Q ss_pred CCCHHHHHH----------------------------HHHhcCC-CeEEEcccCCcchhhhH
Q psy17235 72 QVTEADMEN----------------------------FWSRRSS-RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 72 ~v~~~~~~~----------------------------~a~~~~~-~~~~e~Sa~~~~~v~~~ 104 (170)
.. ++... ..++.+. ..++++|++++.|+++.
T Consensus 179 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L 238 (253)
T PRK13768 179 EL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDEL 238 (253)
T ss_pred hH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHH
Confidence 11 11111 1223342 35778999999999976
No 248
>PRK12288 GTPase RsgA; Reviewed
Probab=98.59 E-value=3.3e-07 Score=74.90 Aligned_cols=80 Identities=13% Similarity=0.078 Sum_probs=58.5
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-CCHHHHHHHHHhcCCCeEEEcccCCcc
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ-VTEADMENFWSRRSSRRFKPQEVVEPQ 99 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~-v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 99 (170)
.|+|++++|++++...++..+..|+..+.. .++|++||+||+|+.. ... ....+........+. .++.+||+++.
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~-~~~~~~~~~~~~~y~~~g~-~v~~vSA~tg~ 194 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLD-DEGRAFVNEQLDIYRNIGY-RVLMVSSHTGE 194 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCC-cHHHHHHHHHHHHHHhCCC-eEEEEeCCCCc
Confidence 459999999999988999999999875432 4789999999999965 211 011222223345566 46678999999
Q ss_pred hhhhH
Q psy17235 100 EVVEA 104 (170)
Q Consensus 100 ~v~~~ 104 (170)
|+++.
T Consensus 195 GideL 199 (347)
T PRK12288 195 GLEEL 199 (347)
T ss_pred CHHHH
Confidence 99875
No 249
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.58 E-value=5.3e-08 Score=70.85 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=63.0
Q ss_pred CeEEecCCcccc------ccchhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERV------ASITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~------~~~~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+.+.|+||--.+ ..+...|+ ...|+++.|.|.++.+.-- ....++.+. ++|+|++.||+|... .+.
T Consensus 49 ~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l---~l~~ql~e~--g~P~vvvlN~~D~a~-~~g 122 (156)
T PF02421_consen 49 VELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNL---YLTLQLLEL--GIPVVVVLNKMDEAE-RKG 122 (156)
T ss_dssp EEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHH---HHHHHHHHT--TSSEEEEEETHHHHH-HTT
T ss_pred EEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHH---HHHHHHHHc--CCCEEEEEeCHHHHH-HcC
Confidence 368999995332 22444554 5899999999998754322 233444443 799999999999765 333
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+.. +...+.+.+|+| .+.+||++++|+++.
T Consensus 123 ~~i-d~~~Ls~~Lg~p-vi~~sa~~~~g~~~L 152 (156)
T PF02421_consen 123 IEI-DAEKLSERLGVP-VIPVSARTGEGIDEL 152 (156)
T ss_dssp EEE--HHHHHHHHTS--EEEEBTTTTBTHHHH
T ss_pred CEE-CHHHHHHHhCCC-EEEEEeCCCcCHHHH
Confidence 332 366788888997 668899999999975
No 250
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.56 E-value=2.3e-07 Score=71.72 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=65.1
Q ss_pred CeEEecCCcccccc-----chhhhccCCcEEEEEEeCCChhh---HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC-CC
Q psy17235 1 MQLWDTGGMERVAS-----ITSSYYKFAEAAILVFSLDNAAS---FHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT-TP 71 (170)
Q Consensus 1 l~iwDt~G~e~~~~-----~~~~~~~~ad~iilv~D~t~~~S---f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~-~~ 71 (170)
|+|||+|||..+.. .....++++.++|+|+|+.+.+- +..+...+..+.++.|++.+-+..+|+|+..+ .+
T Consensus 50 l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r 129 (232)
T PF04670_consen 50 LNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDER 129 (232)
T ss_dssp EEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHH
T ss_pred EEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHH
Confidence 57999999976533 46778999999999999995443 44445666777777899999999999998542 11
Q ss_pred CCCH----HHHHHHHHhcC--CCeEEEcccCCcchhhhH
Q psy17235 72 QVTE----ADMENFWSRRS--SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 72 ~v~~----~~~~~~a~~~~--~~~~~e~Sa~~~~~v~~~ 104 (170)
.... +...+.+...+ -..|+.||.-+ ..+.+|
T Consensus 130 ~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A 167 (232)
T PF04670_consen 130 EEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEA 167 (232)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHH
Confidence 1111 22333444444 23577788766 355544
No 251
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.54 E-value=2.1e-07 Score=81.60 Aligned_cols=102 Identities=20% Similarity=0.189 Sum_probs=64.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-C--CHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ-V--TEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~-v--~~~~ 77 (170)
+.|+||||++.|..........+|++++|+|.+....-+. ...+..+... ...|++|+.||+|+.+.... . -..+
T Consensus 106 ~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~~i~~~ 183 (632)
T PRK05506 106 FIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFDEIVAD 183 (632)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh-CCCeEEEEEEecccccchhHHHHHHHHH
Confidence 3689999999886655556789999999999976432111 1111112222 23578899999998641111 1 1123
Q ss_pred HHHHHHhcCCC--eEEEcccCCcchhhhH
Q psy17235 78 MENFWSRRSSR--RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~~--~~~e~Sa~~~~~v~~~ 104 (170)
...+.+..++. .++.+||++|.|+.+.
T Consensus 184 i~~~~~~~~~~~~~iipiSA~~g~ni~~~ 212 (632)
T PRK05506 184 YRAFAAKLGLHDVTFIPISALKGDNVVTR 212 (632)
T ss_pred HHHHHHHcCCCCccEEEEecccCCCcccc
Confidence 33444555653 4788999999999853
No 252
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.52 E-value=4.1e-07 Score=65.76 Aligned_cols=86 Identities=9% Similarity=-0.002 Sum_probs=55.4
Q ss_pred cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEE
Q psy17235 12 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFK 91 (170)
Q Consensus 12 ~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~ 91 (170)
+..++.+..+++|++++|+|.+++.+.... .+...+.. .+.|+++|+||+|+.+ .... .....+....+.+ ++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~-~~~~--~~~~~~~~~~~~~-~~ 74 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE--LGKKLLIVLNKADLVP-KEVL--EKWKSIKESEGIP-VV 74 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh--CCCcEEEEEEhHHhCC-HHHH--HHHHHHHHhCCCc-EE
Confidence 345778889999999999999886543321 22222211 3689999999999854 2111 1111233334444 56
Q ss_pred EcccCCcchhhhH
Q psy17235 92 PQEVVEPQEVVEA 104 (170)
Q Consensus 92 e~Sa~~~~~v~~~ 104 (170)
.+||+++.|+++.
T Consensus 75 ~iSa~~~~gi~~L 87 (156)
T cd01859 75 YVSAKERLGTKIL 87 (156)
T ss_pred EEEccccccHHHH
Confidence 7899999999875
No 253
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.52 E-value=3e-07 Score=78.92 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=49.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.||||||+..|......+++.+|++|+|+|.++.-. .....++..... .++|+++++||+|+..
T Consensus 82 inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 82 VNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECccccC
Confidence 4689999999888766778999999999999987421 123344443322 4789999999999864
No 254
>PRK09866 hypothetical protein; Provisional
Probab=98.49 E-value=1.8e-06 Score=74.97 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=66.3
Q ss_pred eEEecCCccc-----cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235 2 QLWDTGGMER-----VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEA 76 (170)
Q Consensus 2 ~iwDt~G~e~-----~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~ 76 (170)
-|.||||-.. +..+....+..+|++++|+|.++..+... ....+.+.+...+.|+++|.||+|+.+ ...-..+
T Consensus 233 IFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~d-reeddkE 310 (741)
T PRK09866 233 TLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQD-RNSDDAD 310 (741)
T ss_pred EEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCCC-cccchHH
Confidence 4789999643 22223346899999999999988655443 223334444333479999999999864 2232344
Q ss_pred HHHHHHHhc------CCCeEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRR------SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~------~~~~~~e~Sa~~~~~v~~~ 104 (170)
....+.... .....+++||+.|.|+++.
T Consensus 311 ~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~L 344 (741)
T PRK09866 311 QVRALISGTLMKGCITPQQIFPVSSMWGYLANRA 344 (741)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHH
Confidence 555543322 2446888999999999976
No 255
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.46 E-value=3.9e-07 Score=76.83 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=65.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChh---hH---HHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCC-CC-
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SF---HVLSQHLLEIVTYAENAK-IFLCGNKSDLEGT-TP- 71 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~---Sf---~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~-~~- 71 (170)
+.|.||||++.|..........+|++++|+|.+... .| ...+..+..+.. -++| +|++.||+|.... ..
T Consensus 87 i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 87 FTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred EEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEccccccchhhH
Confidence 468999999999777777788999999999988632 11 122222222222 2566 6789999995320 00
Q ss_pred ---CCCHHHHHHHHHhcCC----CeEEEcccCCcchhhh
Q psy17235 72 ---QVTEADMENFWSRRSS----RRFKPQEVVEPQEVVE 103 (170)
Q Consensus 72 ---~v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~ 103 (170)
.-..++...+....++ ..|+.+||.+|.|+.+
T Consensus 165 ~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1112344555555554 4588999999999875
No 256
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.44 E-value=9.1e-07 Score=63.34 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=67.9
Q ss_pred eEEecCCcc----ccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 2 QLWDTGGME----RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 2 ~iwDt~G~e----~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
.+.||||.- .|..-.-..-.+||.+++|.|.+++.+.-. +.+... -+.|+|=|.||+|+.. .....+.
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa~~-f~~pvIGVITK~Dl~~--~~~~i~~ 110 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFASM-FNKPVIGVITKIDLPS--DDANIER 110 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhhcc-cCCCEEEEEECccCcc--chhhHHH
Confidence 368999942 222222223448999999999999765321 222222 2679999999999983 1345667
Q ss_pred HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+.++.+..|+...+++|+.+|+||++.
T Consensus 111 a~~~L~~aG~~~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 111 AKKWLKNAGVKEIFEVSAVTGEGIEEL 137 (143)
T ss_pred HHHHHHHcCCCCeEEEECCCCcCHHHH
Confidence 888888899988899999999999975
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.41 E-value=1.6e-06 Score=73.31 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=63.1
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC--CHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV--TEADM 78 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v--~~~~~ 78 (170)
.|.||||++.|....-.-...+|++++|+|.+... .-+. +..+. +.....-.|+|+|.||+|+.+ ...+ ..++.
T Consensus 120 ~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~-i~~~lgi~~iIVvlNKiDlv~-~~~~~~~~~ei 196 (460)
T PTZ00327 120 SFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLA-AVEIMKLKHIIILQNKIDLVK-EAQAQDQYEEI 196 (460)
T ss_pred eeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHH-HHHHcCCCcEEEEEecccccC-HHHHHHHHHHH
Confidence 58999999999666556678999999999998641 2111 22222 222222346889999999864 1111 11233
Q ss_pred HHHHHhc--CCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRR--SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~--~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+.+.. ....++.+||++|.|++..
T Consensus 197 ~~~l~~~~~~~~~iipVSA~~G~nI~~L 224 (460)
T PTZ00327 197 RNFVKGTIADNAPIIPISAQLKYNIDVV 224 (460)
T ss_pred HHHHHhhccCCCeEEEeeCCCCCCHHHH
Confidence 3333221 2235788999999999754
No 258
>KOG1489|consensus
Probab=98.41 E-value=2.4e-06 Score=68.19 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=74.6
Q ss_pred CeEEecCCcccc----ccchhhh---ccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERV----ASITSSY---YKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~----~~~~~~~---~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~ 67 (170)
+.+-|+||--+- ..+-..+ ++.+++.++|.|++.+ .-++.++.+..++..+. .+-|.++|+||+|++
T Consensus 246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 357788884331 2233444 4579999999999998 77888877777776665 688999999999985
Q ss_pred CCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 68 GTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 68 ~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+ . ..+-...+++...-++.++.||++++++.+.
T Consensus 326 e-a---e~~~l~~L~~~lq~~~V~pvsA~~~egl~~l 358 (366)
T KOG1489|consen 326 E-A---EKNLLSSLAKRLQNPHVVPVSAKSGEGLEEL 358 (366)
T ss_pred h-H---HHHHHHHHHHHcCCCcEEEeeeccccchHHH
Confidence 3 0 1122467888888888999999999998875
No 259
>PLN03126 Elongation factor Tu; Provisional
Probab=98.40 E-value=9.2e-07 Score=75.12 Aligned_cols=97 Identities=15% Similarity=0.081 Sum_probs=64.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCC---CHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQV---TEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v---~~~ 76 (170)
+.|+||||++.|......-+..+|++++|+|.++...-. ...++..+... ++| +|++.||+|+.+ .... -.+
T Consensus 146 i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~--gi~~iIvvvNK~Dl~~-~~~~~~~i~~ 221 (478)
T PLN03126 146 YAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV--GVPNMVVFLNKQDQVD-DEELLELVEL 221 (478)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEecccccC-HHHHHHHHHH
Confidence 368999999998766666678999999999988653322 23344333333 677 778999999865 2111 112
Q ss_pred HHHHHHHhcCC----CeEEEcccCCcchh
Q psy17235 77 DMENFWSRRSS----RRFKPQEVVEPQEV 101 (170)
Q Consensus 77 ~~~~~a~~~~~----~~~~e~Sa~~~~~v 101 (170)
+...+.+..|+ ..|+..||.++.|+
T Consensus 222 ~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 222 EVRELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHHHHHHhcCCCcCcceEEEEEccccccc
Confidence 45555555543 35778899998665
No 260
>CHL00071 tufA elongation factor Tu
Probab=98.38 E-value=1.1e-06 Score=73.30 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=65.0
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCC---CHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQV---TEAD 77 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v---~~~~ 77 (170)
.+.||||+..|......-+..+|++++|+|.+.... ......+..+.. .++| +|++.||+|+.+ .... -.++
T Consensus 78 ~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~--~g~~~iIvvvNK~D~~~-~~~~~~~~~~~ 153 (409)
T CHL00071 78 AHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ--VGVPNIVVFLNKEDQVD-DEELLELVELE 153 (409)
T ss_pred EEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH--cCCCEEEEEEEccCCCC-HHHHHHHHHHH
Confidence 589999999886655666789999999999886432 122233333332 2578 778999999865 2221 1235
Q ss_pred HHHHHHhcCC----CeEEEcccCCcchhh
Q psy17235 78 MENFWSRRSS----RRFKPQEVVEPQEVV 102 (170)
Q Consensus 78 ~~~~a~~~~~----~~~~e~Sa~~~~~v~ 102 (170)
...+.+..+. ..++..||.+|.|+.
T Consensus 154 l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~ 182 (409)
T CHL00071 154 VRELLSKYDFPGDDIPIVSGSALLALEAL 182 (409)
T ss_pred HHHHHHHhCCCCCcceEEEcchhhccccc
Confidence 5556665553 458889999998764
No 261
>COG1159 Era GTPase [General function prediction only]
Probab=98.38 E-value=2.6e-06 Score=67.40 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=65.6
Q ss_pred eEEecCCccc--------cccchhhhccCCcEEEEEEeCCChhhHHHHHHH-HHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 2 QLWDTGGMER--------VASITSSYYKFAEAAILVFSLDNAASFHVLSQH-LLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 2 ~iwDt~G~e~--------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~-~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
-+.||||-.. +.......+.++|.+++|.|.+++..-. ..| ++.+.. .+.|++++.||+|... ...
T Consensus 57 IfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~--d~~il~~lk~--~~~pvil~iNKID~~~-~~~ 131 (298)
T COG1159 57 IFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPG--DEFILEQLKK--TKTPVILVVNKIDKVK-PKT 131 (298)
T ss_pred EEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCcc--HHHHHHHHhh--cCCCeEEEEEccccCC-cHH
Confidence 4789999322 2334455678999999999998854322 123 233333 3689999999999876 222
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.-......+.....+...++.||++|.|++..
T Consensus 132 ~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L 163 (298)
T COG1159 132 VLLKLIAFLKKLLPFKEIVPISALKGDNVDTL 163 (298)
T ss_pred HHHHHHHHHHhhCCcceEEEeeccccCCHHHH
Confidence 11333444455556677889999999999864
No 262
>PRK12740 elongation factor G; Reviewed
Probab=98.35 E-value=1.9e-06 Score=76.08 Aligned_cols=81 Identities=12% Similarity=0.069 Sum_probs=59.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
+.+|||||+..|...+..+++.+|++++|+|.+...+......|. .+.. .++|+++|+||+|+.. . ...+...+
T Consensus 62 i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~--~~~p~iiv~NK~D~~~-~--~~~~~~~~ 135 (668)
T PRK12740 62 INLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK--YGVPRIIFVNKMDRAG-A--DFFRVLAQ 135 (668)
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH--cCCCEEEEEECCCCCC-C--CHHHHHHH
Confidence 478999999988888888999999999999999877766544443 3332 3789999999999865 2 22333444
Q ss_pred HHHhcCC
Q psy17235 81 FWSRRSS 87 (170)
Q Consensus 81 ~a~~~~~ 87 (170)
+...++.
T Consensus 136 l~~~l~~ 142 (668)
T PRK12740 136 LQEKLGA 142 (668)
T ss_pred HHHHHCC
Confidence 5554554
No 263
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.28 E-value=5.6e-06 Score=66.93 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=28.0
Q ss_pred CeEEecCCc----cccccchhhh---ccCCcEEEEEEeCCC
Q psy17235 1 MQLWDTGGM----ERVASITSSY---YKFAEAAILVFSLDN 34 (170)
Q Consensus 1 l~iwDt~G~----e~~~~~~~~~---~~~ad~iilv~D~t~ 34 (170)
+++|||||. +.+..+...+ +++||++++|+|++.
T Consensus 71 i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 71 VELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred EEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 579999998 5566666665 899999999999973
No 264
>KOG1144|consensus
Probab=98.27 E-value=4.3e-06 Score=73.11 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=49.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
|.+.||||++.|..++......+|.+|+|+|+.. +++.+++..+ +. .+.|+||..||+|.
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lL----R~--rktpFivALNKiDR 604 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLL----RM--RKTPFIVALNKIDR 604 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHH----Hh--cCCCeEEeehhhhh
Confidence 4589999999999999999999999999999975 6676665322 11 48999999999995
No 265
>PRK00049 elongation factor Tu; Reviewed
Probab=98.26 E-value=3.9e-06 Score=69.78 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=61.3
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEE-EEeeCCCCCCCCCCC---CHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNKSDLEGTTPQV---TEAD 77 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvv-lvgnK~Dl~~~~~~v---~~~~ 77 (170)
.+.||||+..|.......+..+|++++|+|.+....- ....++..+... ++|.+ ++.||+|+.+ .... -..+
T Consensus 78 ~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~~--g~p~iiVvvNK~D~~~-~~~~~~~~~~~ 153 (396)
T PRK00049 78 AHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--GVPYIVVFLNKCDMVD-DEELLELVEME 153 (396)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHHc--CCCEEEEEEeecCCcc-hHHHHHHHHHH
Confidence 5889999998866555667899999999999874322 222333333332 57875 5799999864 2111 1123
Q ss_pred HHHHHHhcCC----CeEEEcccCCcch
Q psy17235 78 MENFWSRRSS----RRFKPQEVVEPQE 100 (170)
Q Consensus 78 ~~~~a~~~~~----~~~~e~Sa~~~~~ 100 (170)
...+....+. ..++.+||.++.+
T Consensus 154 i~~~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 154 VRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHHHHHhcCCCccCCcEEEeecccccC
Confidence 4444444443 3577899998865
No 266
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.25 E-value=3e-06 Score=60.36 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=51.4
Q ss_pred hhccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEccc
Q psy17235 18 SYYKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEV 95 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~~Sf~--~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa 95 (170)
..+..+|++++|+|.+++.+.. .+..|+... .++.|+++|.||+|+.. ... ..+..++.+..+. .++.+||
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~-~~~--~~~~~~~~~~~~~-~ii~iSa 79 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLT-EEQ--RKAWAEYFKKEGI-VVVFFSA 79 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCC-HHH--HHHHHHHHHhcCC-eEEEEEe
Confidence 3577899999999999987654 444555432 25789999999999854 221 1233344445554 4667899
Q ss_pred CCcch
Q psy17235 96 VEPQE 100 (170)
Q Consensus 96 ~~~~~ 100 (170)
+++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98864
No 267
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.24 E-value=2.7e-06 Score=75.69 Aligned_cols=65 Identities=22% Similarity=0.121 Sum_probs=48.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.+|||||+..|.......++.+|++|+|+|.++.-..+....|. .... .+.|+++++||+|...
T Consensus 88 i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 88 INLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred EEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHHH--cCCCEEEEEEChhccc
Confidence 468999999999888888999999999999998743322222232 1212 3678899999999854
No 268
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.19 E-value=1e-05 Score=67.44 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=62.7
Q ss_pred CeEEecCCccccc---------cchhhhccCCcEEEEEEeCCChhhH--HHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235 1 MQLWDTGGMERVA---------SITSSYYKFAEAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNKSDLEGT 69 (170)
Q Consensus 1 l~iwDt~G~e~~~---------~~~~~~~~~ad~iilv~D~t~~~Sf--~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~ 69 (170)
|.+.||+|-+.-. ......+..||++|||+|...--+- +.+-+|+. ..+.|++||.||+|-..
T Consensus 53 f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr-----~~~kpviLvvNK~D~~~- 126 (444)
T COG1160 53 FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR-----RSKKPVILVVNKIDNLK- 126 (444)
T ss_pred EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-----hcCCCEEEEEEcccCch-
Confidence 5689999966322 1233446789999999998763332 22233433 24699999999999643
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 70 TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 ~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++...-.-++|+...+..||..|.|+.+.
T Consensus 127 -----~e~~~~efyslG~g~~~~ISA~Hg~Gi~dL 156 (444)
T COG1160 127 -----AEELAYEFYSLGFGEPVPISAEHGRGIGDL 156 (444)
T ss_pred -----hhhhHHHHHhcCCCCceEeehhhccCHHHH
Confidence 223222334578877888999999999964
No 269
>PRK12739 elongation factor G; Reviewed
Probab=98.18 E-value=3.7e-06 Score=74.53 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=50.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.++||||+..|...+...++.+|++++|+|.++...-+... .+..+.. .+.|++++.||+|+..
T Consensus 75 i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~--~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 75 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK--YGVPRIVFVNKMDRIG 139 (691)
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECCCCCC
Confidence 468999999988888888999999999999998764433322 2233333 3689999999999875
No 270
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.18 E-value=2.7e-05 Score=58.58 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=40.6
Q ss_pred CeEEecCCccccccchhh-----hccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERVASITSS-----YYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~-----~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~ 67 (170)
+.+|||||.......... .+.++|+++++.| .+|... ..|+..+... +.|+++|+||+|+.
T Consensus 54 l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~ 120 (197)
T cd04104 54 VTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRD 120 (197)
T ss_pred ceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccch
Confidence 479999997543222223 3678999988843 233333 3566666554 57999999999984
No 271
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.17 E-value=2.2e-05 Score=65.58 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=60.1
Q ss_pred CeEEecCCcccccc--------chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVAS--------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~~--------~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+++.||+|-..-.. -....+..||.+++|+|.+.+.+-... ..+. ....+.|+++|.||.|+.. ...
T Consensus 267 v~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~---~~~~~~~~i~v~NK~DL~~-~~~ 341 (454)
T COG0486 267 VRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL-ALIE---LLPKKKPIIVVLNKADLVS-KIE 341 (454)
T ss_pred EEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH-HHHH---hcccCCCEEEEEechhccc-ccc
Confidence 47899999653222 224457799999999999986332221 1111 2226799999999999977 222
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.. . . +..+-..+...||++++|++..
T Consensus 342 ~~--~---~-~~~~~~~~i~iSa~t~~Gl~~L 367 (454)
T COG0486 342 LE--S---E-KLANGDAIISISAKTGEGLDAL 367 (454)
T ss_pred cc--h---h-hccCCCceEEEEecCccCHHHH
Confidence 11 1 1 1122235778899999999975
No 272
>PRK13796 GTPase YqeH; Provisional
Probab=98.11 E-value=1.6e-05 Score=65.52 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=54.7
Q ss_pred cCCc-EEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH----HHhcCCC--eEEEc
Q psy17235 21 KFAE-AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF----WSRRSSR--RFKPQ 93 (170)
Q Consensus 21 ~~ad-~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~----a~~~~~~--~~~e~ 93 (170)
..++ .+++|+|+.|.. ..|.+.+.+...+.|+++|+||+|+.. +.+..+....| ++..|+. .++.+
T Consensus 67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DLl~--~~~~~~~i~~~l~~~~k~~g~~~~~v~~v 139 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADLLP--KSVKKNKVKNWLRQEAKELGLRPVDVVLI 139 (365)
T ss_pred cccCcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhhCC--CccCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence 3445 899999998854 246666666556789999999999964 34444444444 5556653 46789
Q ss_pred ccCCcchhhhH
Q psy17235 94 EVVEPQEVVEA 104 (170)
Q Consensus 94 Sa~~~~~v~~~ 104 (170)
||+++.|+++.
T Consensus 140 SAk~g~gI~eL 150 (365)
T PRK13796 140 SAQKGHGIDEL 150 (365)
T ss_pred ECCCCCCHHHH
Confidence 99999999976
No 273
>KOG1532|consensus
Probab=98.03 E-value=0.00017 Score=56.86 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=36.3
Q ss_pred eEEecCCccc-ccc-----c-hhhh-ccCCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 2 QLWDTGGMER-VAS-----I-TSSY-YKFAEAAILVFSLD---NAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~-~~~-----~-~~~~-~~~ad~iilv~D~t---~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
.|.|||||-. |.- + .... -...-++++|.|.. +|.+|-+=.-+--.+ -+....|+|++.||+|+.+
T Consensus 119 ~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi-lyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 119 VLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI-LYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred EEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH-HHhccCCeEEEEecccccc
Confidence 4789999964 211 1 1111 12455677777753 344443211111111 1116899999999999976
No 274
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.02 E-value=2.3e-05 Score=56.73 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=49.1
Q ss_pred hccCCcEEEEEEeCCChhh--HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcC--CC-eEEEc
Q psy17235 19 YYKFAEAAILVFSLDNAAS--FHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRS--SR-RFKPQ 93 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~~~S--f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~--~~-~~~e~ 93 (170)
.+.++|.+++|.|.+++.+ ...+..++. ....+.|+++|.||+|+.. . ++...+...+. .+ ..+.+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~~~~~p~ilVlNKiDl~~-~-----~~~~~~~~~~~~~~~~~~~~i 75 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KEKPHKHLIFVLNKCDLVP-T-----WVTARWVKILSKEYPTIAFHA 75 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---hccCCCCEEEEEEchhcCC-H-----HHHHHHHHHHhcCCcEEEEEe
Confidence 4678999999999998743 223333332 2224689999999999854 2 22223333321 12 23568
Q ss_pred ccCCcchhhhH
Q psy17235 94 EVVEPQEVVEA 104 (170)
Q Consensus 94 Sa~~~~~v~~~ 104 (170)
||+++.|+.+.
T Consensus 76 Sa~~~~~~~~L 86 (157)
T cd01858 76 SINNPFGKGSL 86 (157)
T ss_pred eccccccHHHH
Confidence 99999998864
No 275
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.01 E-value=6.2e-05 Score=56.88 Aligned_cols=63 Identities=35% Similarity=0.502 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHh
Q psy17235 102 VEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLA 164 (170)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 164 (170)
+.+....+.++..|..+++.++.++.+|..+|+.+|+++|.+.+|.+.+++|.+...+++|+.
T Consensus 135 ~~ae~~~~~a~~~fe~iS~~~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~~~~~ 197 (198)
T cd07630 135 EQAEEAKKKAETEFEEISSLAKKELERFHRQRVLELQSALVCYAESQIKNAKEAAAVLTKTLE 197 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345557777889999999999999999999999999999999999999999999999999985
No 276
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.01 E-value=4.6e-06 Score=66.17 Aligned_cols=69 Identities=7% Similarity=0.039 Sum_probs=39.5
Q ss_pred hhcc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC-CCCCCHHHHHHHHHhcCCCeE
Q psy17235 18 SYYK--FAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT-TPQVTEADMENFWSRRSSRRF 90 (170)
Q Consensus 18 ~~~~--~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~-~~~v~~~~~~~~a~~~~~~~~ 90 (170)
.++. .+|+++++++.+.. .+... ...+..+. ..+|+++|+||+|+... ..........+.+..+++..|
T Consensus 108 ~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~ 180 (276)
T cd01850 108 PRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIY 180 (276)
T ss_pred ccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceE
Confidence 4444 36677777766541 12111 12233333 36999999999998441 122334556677777787654
No 277
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.96 E-value=4.1e-05 Score=62.12 Aligned_cols=101 Identities=22% Similarity=0.189 Sum_probs=67.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH----H
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE----A 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~----~ 76 (170)
|-|-|||||+.|....-.--..||..|+++|... .-++..++. ..|.....=.-+||..||+||.+ ..+-.. +
T Consensus 88 FIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-Gvl~QTrRH-s~I~sLLGIrhvvvAVNKmDLvd-y~e~~F~~I~~ 164 (431)
T COG2895 88 FIIADTPGHEQYTRNMATGASTADLAILLVDARK-GVLEQTRRH-SFIASLLGIRHVVVAVNKMDLVD-YSEEVFEAIVA 164 (431)
T ss_pred EEEecCCcHHHHhhhhhcccccccEEEEEEecch-hhHHHhHHH-HHHHHHhCCcEEEEEEeeecccc-cCHHHHHHHHH
Confidence 3578999999997766666778999999999732 222222221 11111112234778899999987 333222 3
Q ss_pred HHHHHHHhcCC--CeEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRRSS--RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~--~~~~e~Sa~~~~~v~~~ 104 (170)
+-..||.+++. ..|++.||..|.||...
T Consensus 165 dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~ 194 (431)
T COG2895 165 DYLAFAAQLGLKDVRFIPISALLGDNVVSK 194 (431)
T ss_pred HHHHHHHHcCCCcceEEechhccCCccccc
Confidence 45678888876 47999999999998754
No 278
>PLN03127 Elongation factor Tu; Provisional
Probab=97.96 E-value=2.7e-05 Score=65.79 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=43.6
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~ 68 (170)
.+.||||++.|......-...+|++++|+|.++...-+ ....+..+.. .++| +|++.||+|+.+
T Consensus 127 ~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~--~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 127 AHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ--VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred EEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH--cCCCeEEEEEEeeccCC
Confidence 58999999988654444566799999999987643211 1222223332 3688 578899999864
No 279
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.94 E-value=1.7e-05 Score=61.70 Aligned_cols=101 Identities=15% Similarity=0.088 Sum_probs=54.7
Q ss_pred eEEecCCccccccchhhhc--------cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYY--------KFAEAAILVFSLDN---AASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGT 69 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~--------~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~ 69 (170)
-|+|||||.++...|.... ...-++++++|... +..|-. .++-.+.-.. -+.|.|.|.||+|+.+
T Consensus 94 ~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~~- 170 (238)
T PF03029_consen 94 LLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLLS- 170 (238)
T ss_dssp EEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS--
T ss_pred EEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCccc-
Confidence 4899999998777666655 56778999999764 444433 2332222111 4799999999999865
Q ss_pred CC----------------------CCCHHHHHHHHHhcCCC-eEEEcccCCcchhhhHH
Q psy17235 70 TP----------------------QVTEADMENFWSRRSSR-RFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 70 ~~----------------------~v~~~~~~~~a~~~~~~-~~~e~Sa~~~~~v~~~~ 105 (170)
.. .--.++..++..+++.. .|...|+.+++++.+..
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~ 229 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELL 229 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHH
Confidence 11 00001222333444555 79999999999999763
No 280
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.94 E-value=1.4e-05 Score=66.35 Aligned_cols=66 Identities=27% Similarity=0.288 Sum_probs=52.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDL 66 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----------~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl 66 (170)
+.++|+|||..-+.-|.+++.+++++|+|.++++- ..+......+..+.... .++|+||+.||.|+
T Consensus 238 ~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 238 FRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 47899999998899999999999999999998642 23544455666666554 78999999999996
No 281
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.94 E-value=0.0001 Score=53.24 Aligned_cols=73 Identities=11% Similarity=0.109 Sum_probs=46.8
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH---HHhcCCCeEEEcccCCcch
Q psy17235 24 EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF---WSRRSSRRFKPQEVVEPQE 100 (170)
Q Consensus 24 d~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~---a~~~~~~~~~e~Sa~~~~~ 100 (170)
|.+++|+|.+++.+... .|+........+.|+++|.||+|+.. . ++...+ .+.......+.+||+++.+
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~~~~p~IiVlNK~Dl~~-~-----~~~~~~~~~~~~~~~~~ii~vSa~~~~g 72 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKEKGKKLILVLNKADLVP-K-----EVLRKWLAYLRHSYPTIPFKISATNGQG 72 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhcCCCCEEEEEechhcCC-H-----HHHHHHHHHHHhhCCceEEEEeccCCcC
Confidence 68999999999876653 24431111125799999999999854 1 222222 1222233466789999999
Q ss_pred hhhH
Q psy17235 101 VVEA 104 (170)
Q Consensus 101 v~~~ 104 (170)
+.+.
T Consensus 73 i~~L 76 (155)
T cd01849 73 IEKK 76 (155)
T ss_pred hhhH
Confidence 8875
No 282
>KOG3886|consensus
Probab=97.94 E-value=1.8e-05 Score=60.82 Aligned_cols=68 Identities=29% Similarity=0.511 Sum_probs=54.0
Q ss_pred CeEEecCCcccc-----ccchhhhccCCcEEEEEEeCCChhh---HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERV-----ASITSSYYKFAEAAILVFSLDNAAS---FHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~-----~~~~~~~~~~ad~iilv~D~t~~~S---f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
|.+||++||+.+ .......+++.+++|+|||+...+- |...+..++.+.++.|...+.+..+|.|+..
T Consensus 55 LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 55 LNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 568999999853 3356777999999999999998753 4444566677778879999999999999864
No 283
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.93 E-value=0.00012 Score=61.21 Aligned_cols=108 Identities=18% Similarity=0.083 Sum_probs=69.0
Q ss_pred eEEecCCc----------cccccch-hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCC
Q psy17235 2 QLWDTGGM----------ERVASIT-SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTT 70 (170)
Q Consensus 2 ~iwDt~G~----------e~~~~~~-~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~ 70 (170)
.+.||+|- |.|...+ ...+..+|.+++|.|.+.+-+-++.+ ....+.+ ...|+|+|.||.|+.+ .
T Consensus 229 ~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~--~g~~~vIvvNKWDl~~-~ 304 (444)
T COG1160 229 VLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLIEE--AGRGIVIVVNKWDLVE-E 304 (444)
T ss_pred EEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH--cCCCeEEEEEccccCC-c
Confidence 58899994 3443332 33467899999999999987765532 2222222 4788999999999876 3
Q ss_pred CCCCHHHH----HHHHHhcCCCeEEEcccCCcchhhhHHHHHHHHHH
Q psy17235 71 PQVTEADM----ENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACD 113 (170)
Q Consensus 71 ~~v~~~~~----~~~a~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~~~ 113 (170)
...+.++. ...-...+....+.+||+++.++...+.....++.
T Consensus 305 ~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 305 DEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred hhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 33444433 22233334445666899999999986444433333
No 284
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.89 E-value=7.9e-05 Score=56.34 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=53.7
Q ss_pred EEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeE--EEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI--FLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 3 iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pv--vlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
+.+|.|..--....+ .-+|++|.|+|+++..+... .+. +++.. ++++||+|+.+ ...-..+...+
T Consensus 96 iIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~-------~qi~~ad~~~~~k~d~~~-~~~~~~~~~~~ 162 (199)
T TIGR00101 96 FIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGG-------PGITRSDLLVINKIDLAP-MVGADLGVMER 162 (199)
T ss_pred EEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhH-------hHhhhccEEEEEhhhccc-cccccHHHHHH
Confidence 566777321112222 12688999999987666321 111 23444 88999999964 21222333444
Q ss_pred HHHhc-CCCeEEEcccCCcchhhhHH
Q psy17235 81 FWSRR-SSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 81 ~a~~~-~~~~~~e~Sa~~~~~v~~~~ 105 (170)
..+.+ ....++++||++|+|+++.+
T Consensus 163 ~~~~~~~~~~i~~~Sa~~g~gi~el~ 188 (199)
T TIGR00101 163 DAKKMRGEKPFIFTNLKTKEGLDTVI 188 (199)
T ss_pred HHHHhCCCCCEEEEECCCCCCHHHHH
Confidence 44443 33567899999999999763
No 285
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.87 E-value=0.00015 Score=58.60 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=63.4
Q ss_pred eEEecCCccc----cccchhhhc---cCCcEEEEEEeCCChh---hHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCC
Q psy17235 2 QLWDTGGMER----VASITSSYY---KFAEAAILVFSLDNAA---SFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~----~~~~~~~~~---~~ad~iilv~D~t~~~---Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~ 68 (170)
.+-|+||--. -..+-..++ ..+.+++.|.|++..+ -.++......++..|. .+-|.+||+||+|+..
T Consensus 210 v~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 210 VVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred EEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 4678887432 122444443 4689999999998654 3555555666666665 6889999999999654
Q ss_pred CCCCCCHHHHHHHH----HhcCCCeEEEcccCCcchhhhH
Q psy17235 69 TTPQVTEADMENFW----SRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 69 ~~~~v~~~~~~~~a----~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+.++.+.++ +..+...+...||.+++++++.
T Consensus 290 -----~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L 324 (369)
T COG0536 290 -----DEEELEELKKALAEALGWEVFYLISALTREGLDEL 324 (369)
T ss_pred -----CHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHH
Confidence 334444443 3334332222899999999975
No 286
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=6.3e-05 Score=62.08 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=67.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SFH---VLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~---Sf~---~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~ 74 (170)
|.|.|+||+..|..-.-.-...||+.|||.|..+.+ .|. ..+.. ..+.....=--+|++.||+|+.+ ..+-.
T Consensus 87 ~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlGi~~lIVavNKMD~v~-wde~r 164 (428)
T COG5256 87 FTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLGIKQLIVAVNKMDLVS-WDEER 164 (428)
T ss_pred EEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcCCceEEEEEEcccccc-cCHHH
Confidence 578999999988776666778999999999998763 121 11111 11222222335778899999876 33322
Q ss_pred HH----HHHHHHHhcCCC----eEEEcccCCcchhhhH
Q psy17235 75 EA----DMENFWSRRSSR----RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 75 ~~----~~~~~a~~~~~~----~~~e~Sa~~~~~v~~~ 104 (170)
.+ +...+.+..|.. .|+.+|+..|.|+.+-
T Consensus 165 f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 22 233366666663 4999999999998864
No 287
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.81 E-value=5.2e-05 Score=55.69 Aligned_cols=84 Identities=12% Similarity=0.035 Sum_probs=51.9
Q ss_pred cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEE
Q psy17235 12 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFK 91 (170)
Q Consensus 12 ~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~ 91 (170)
........+.++|.+++|+|.+++.+-... .+ .....+.|+++|.||+|+.+ ...+ ....++.+..+ ..++
T Consensus 9 ~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i----~~~~~~k~~ilVlNK~Dl~~-~~~~--~~~~~~~~~~~-~~vi 79 (171)
T cd01856 9 ALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LL----EKILGNKPRIIVLNKADLAD-PKKT--KKWLKYFESKG-EKVL 79 (171)
T ss_pred HHHHHHHHHhhCCEEEEEeeccCccCcCCh-hh----HhHhcCCCEEEEEehhhcCC-hHHH--HHHHHHHHhcC-CeEE
Confidence 333445668899999999999877543221 12 22224579999999999864 2111 11112222222 3456
Q ss_pred EcccCCcchhhhH
Q psy17235 92 PQEVVEPQEVVEA 104 (170)
Q Consensus 92 e~Sa~~~~~v~~~ 104 (170)
.+||+++.|+++.
T Consensus 80 ~iSa~~~~gi~~L 92 (171)
T cd01856 80 FVNAKSGKGVKKL 92 (171)
T ss_pred EEECCCcccHHHH
Confidence 7899999998875
No 288
>KOG0082|consensus
Probab=97.80 E-value=3.8e-05 Score=62.56 Aligned_cols=68 Identities=24% Similarity=0.266 Sum_probs=53.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA----------SFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~----------Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~ 68 (170)
+.++|+|||..-+.-|.+++.+++++|+|.++++-+ ........+..|.+.. .+.++||..||.|+-.
T Consensus 197 f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFe 276 (354)
T KOG0082|consen 197 FRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFE 276 (354)
T ss_pred eEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHH
Confidence 578999999988899999999999999999988532 1222234555665555 7899999999999843
No 289
>PRK00007 elongation factor G; Reviewed
Probab=97.79 E-value=6.1e-05 Score=66.95 Aligned_cols=92 Identities=14% Similarity=0.057 Sum_probs=59.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
+.+.||||+..|..-....++.+|++++|+|.+..-.-+...-| ..+.. .+.|++++.||+|+.+ .. ...-..+
T Consensus 77 ~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~--~~~p~iv~vNK~D~~~-~~--~~~~~~~ 150 (693)
T PRK00007 77 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK--YKVPRIAFVNKMDRTG-AD--FYRVVEQ 150 (693)
T ss_pred EEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH--cCCCEEEEEECCCCCC-CC--HHHHHHH
Confidence 46899999988866566678899999999998765444433333 23333 3688999999999875 22 2223334
Q ss_pred HHHhcCC---CeEEEcccCCc
Q psy17235 81 FWSRRSS---RRFKPQEVVEP 98 (170)
Q Consensus 81 ~a~~~~~---~~~~e~Sa~~~ 98 (170)
+...++. +..+.+|+.++
T Consensus 151 i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 151 IKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHhCCCeeeEEecCccCCc
Confidence 4444444 33445566555
No 290
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.78 E-value=0.00016 Score=58.09 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=63.5
Q ss_pred CeEEecCCcc-----ccccc---hhhhcc-CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235 1 MQLWDTGGME-----RVASI---TSSYYK-FAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT 69 (170)
Q Consensus 1 l~iwDt~G~e-----~~~~~---~~~~~~-~ad~iilv~D~t~~--~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~ 69 (170)
+|+.||||-= ....+ .-..++ -+++++++||.+.. -|.+.=..++.++..... .|+++|.||.|+.+
T Consensus 217 ~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~- 294 (346)
T COG1084 217 IQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIAD- 294 (346)
T ss_pred EEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccc-
Confidence 5899999931 11111 111122 36889999998864 456655577888877764 89999999999875
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 70 TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 ~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
... .+++......-|......+++..+.+++.+
T Consensus 295 ~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 327 (346)
T COG1084 295 EEK--LEEIEASVLEEGGEEPLKISATKGCGLDKL 327 (346)
T ss_pred hhH--HHHHHHHHHhhccccccceeeeehhhHHHH
Confidence 222 234444455555554555677777777755
No 291
>KOG0090|consensus
Probab=97.74 E-value=0.00019 Score=54.50 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=51.3
Q ss_pred CeEEecCCccccccchhhhcc---CCcEEEEEEeCC-ChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYK---FAEAAILVFSLD-NAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~---~ad~iilv~D~t-~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~ 68 (170)
+++.|.||+++.+.-...|+. .+-+++||+|.. .+.....+..++-.+...+ ..+|++++.||.|+..
T Consensus 84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 368999999998776666666 799999999975 3455666666665554333 6789999999999864
No 292
>COG2262 HflX GTPases [General function prediction only]
Probab=97.71 E-value=0.00035 Score=57.72 Aligned_cols=77 Identities=13% Similarity=-0.010 Sum_probs=53.5
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcc
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQ 99 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 99 (170)
..||.++.|.|.++|...+.+..-..-+.+.. .++|+|+|.||+|+..+.. ......... +..+..||++|.
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~--~~~v~iSA~~~~ 342 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGS--PNPVFISAKTGE 342 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcC--CCeEEEEeccCc
Confidence 47999999999999977777665555555544 6799999999999754111 111122222 345567999999
Q ss_pred hhhhH
Q psy17235 100 EVVEA 104 (170)
Q Consensus 100 ~v~~~ 104 (170)
|++..
T Consensus 343 gl~~L 347 (411)
T COG2262 343 GLDLL 347 (411)
T ss_pred CHHHH
Confidence 99864
No 293
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.65 E-value=7e-05 Score=67.89 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=49.0
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE 67 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~ 67 (170)
.|.||||+..|..-....++.+|++|+|+|.+..-......-|. .+.. .++|+|++.||+|..
T Consensus 101 nliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred EEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHH--CCCCEEEEEECCccc
Confidence 68999999999887778889999999999998764444333332 2222 478999999999986
No 294
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.64 E-value=0.00012 Score=65.53 Aligned_cols=64 Identities=20% Similarity=0.075 Sum_probs=47.4
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
.|.||||+..|.......++.+|++|+|+|....-.-+...-|.. ... .+.|.|++.||+|+..
T Consensus 90 ~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~--~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 90 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALR--ERVKPVLFINKVDRLI 153 (731)
T ss_pred EEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHH--cCCCeEEEEECchhhc
Confidence 578999999998878888999999999999887543333233332 222 2567899999999763
No 295
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.64 E-value=0.00013 Score=50.97 Aligned_cols=93 Identities=17% Similarity=0.104 Sum_probs=64.4
Q ss_pred EEecCCc----cccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 3 LWDTGGM----ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 3 iwDt~G~----e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
..||||. ..+.+-.-.....+|++++|-..++++|--. +-+... ...|+|=|.+|.||.+ ... -+..
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~-~~k~vIgvVTK~DLae-d~d--I~~~ 111 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDI-GVKKVIGVVTKADLAE-DAD--ISLV 111 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----cccccc-cccceEEEEecccccc-hHh--HHHH
Confidence 3588883 2222222334568999999999999876311 111111 2456888999999986 223 3456
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++|..+-|....+++|+.++.||++.
T Consensus 112 ~~~L~eaGa~~IF~~s~~d~~gv~~l 137 (148)
T COG4917 112 KRWLREAGAEPIFETSAVDNQGVEEL 137 (148)
T ss_pred HHHHHHcCCcceEEEeccCcccHHHH
Confidence 67888889989999999999999976
No 296
>KOG1707|consensus
Probab=97.61 E-value=0.00029 Score=60.43 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=57.4
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCC
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVE 97 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 97 (170)
..+|++.++||++++.||..+...+...... ..+|+++|+.|+|+.. ..+..+-+-.+++++++++.-...|.++
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe-~~Q~~~iqpde~~~~~~i~~P~~~S~~~ 568 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDE-VPQRYSIQPDEFCRQLGLPPPIHISSKT 568 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccch-hhhccCCChHHHHHhcCCCCCeeeccCC
Confidence 5689999999999999999887665543333 6899999999999976 4433333337899999997766667775
No 297
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00029 Score=61.42 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=66.0
Q ss_pred CeEEecCCccccc------cchhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVA------SITSSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~------~~~~~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+++.|.||--.+. .....|+. .+|+++-|.|.++.+.=-.+ --++.+. +.|++++.|+.|... .+-
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyl---tlQLlE~--g~p~ilaLNm~D~A~-~~G 125 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLYL---TLQLLEL--GIPMILALNMIDEAK-KRG 125 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHHH---HHHHHHc--CCCeEEEeccHhhHH-hcC
Confidence 4689999954332 23444443 57999999999986542111 1122332 789999999999876 444
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+. -+..++.+..|+| ..++||++|.|+++.
T Consensus 126 i~-ID~~~L~~~LGvP-Vv~tvA~~g~G~~~l 155 (653)
T COG0370 126 IR-IDIEKLSKLLGVP-VVPTVAKRGEGLEEL 155 (653)
T ss_pred Cc-ccHHHHHHHhCCC-EEEEEeecCCCHHHH
Confidence 33 3456688889997 557899999998875
No 298
>KOG1423|consensus
Probab=97.54 E-value=0.00035 Score=55.92 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=41.0
Q ss_pred eEEecCCccc------ccc------chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 2 QLWDTGGMER------VAS------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~------~~~------~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
-++||||--. +.- --.....+||.+++|+|+++....-+. ..+..+..+ .++|-+||.||.|...
T Consensus 123 vf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~y-s~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 123 VFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEY-SKIPSILVMNKIDKLK 199 (379)
T ss_pred EEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHH-hcCCceeeccchhcch
Confidence 5899999321 111 112335679999999999974433221 223333333 4799999999999754
No 299
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.53 E-value=0.00054 Score=54.28 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=50.2
Q ss_pred hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHH---HhcCCCeEEE
Q psy17235 16 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFW---SRRSSRRFKP 92 (170)
Q Consensus 16 ~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a---~~~~~~~~~e 92 (170)
....+..+|.+++|+|..++.+.+. .++.+.. .+.|+++|.||+|+.+ . ++...+. +..+. .++.
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL~~-~-----~~~~~~~~~~~~~~~-~vi~ 82 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADLAD-P-----AVTKQWLKYFEEKGI-KALA 82 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEccccCC-H-----HHHHHHHHHHHHcCC-eEEE
Confidence 3456789999999999988765433 1222222 3689999999999854 1 1122222 22333 3567
Q ss_pred cccCCcchhhhH
Q psy17235 93 QEVVEPQEVVEA 104 (170)
Q Consensus 93 ~Sa~~~~~v~~~ 104 (170)
+||+++.++.+.
T Consensus 83 iSa~~~~gi~~L 94 (276)
T TIGR03596 83 INAKKGKGVKKI 94 (276)
T ss_pred EECCCcccHHHH
Confidence 899999998764
No 300
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.53 E-value=0.00045 Score=41.60 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=30.4
Q ss_pred CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235 22 FAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNKSD 65 (170)
Q Consensus 22 ~ad~iilv~D~t~~--~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~D 65 (170)
-.+++++++|.+.. -|.+.=...+.+++...++.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 36789999999875 456655577888888878999999999998
No 301
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.51 E-value=0.00048 Score=57.94 Aligned_cols=93 Identities=10% Similarity=0.054 Sum_probs=61.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC-CHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV-TEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v-~~~ 76 (170)
+.|.|||||..|..-....+.-.|++++++|... |++= -.+..... .+.+.|||.||+|.++ .|+- -.+
T Consensus 70 INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTr----FVlkKAl~--~gL~PIVVvNKiDrp~-Arp~~Vvd 142 (603)
T COG1217 70 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTR----FVLKKALA--LGLKPIVVINKIDRPD-ARPDEVVD 142 (603)
T ss_pred EEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchh----hhHHHHHH--cCCCcEEEEeCCCCCC-CCHHHHHH
Confidence 4689999999999988889999999999999876 3331 12222222 3677788899999987 3331 123
Q ss_pred HHHHHHHhc-------CCCeEEEcccCCcchh
Q psy17235 77 DMENFWSRR-------SSRRFKPQEVVEPQEV 101 (170)
Q Consensus 77 ~~~~~a~~~-------~~~~~~e~Sa~~~~~v 101 (170)
+...+--++ .+|.. -.|+++|..-
T Consensus 143 ~vfDLf~~L~A~deQLdFPiv-YAS~~~G~a~ 173 (603)
T COG1217 143 EVFDLFVELGATDEQLDFPIV-YASARNGTAS 173 (603)
T ss_pred HHHHHHHHhCCChhhCCCcEE-EeeccCceec
Confidence 333333333 34433 3588887543
No 302
>KOG0468|consensus
Probab=97.51 E-value=0.00011 Score=63.95 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=50.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
++|.|||||-.|..-....++-+||+++|+|+...-+++.-+ .+....+ .+.|+++|.||.|.
T Consensus 199 ~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~ikhaiq--~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 199 MNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-IIKHAIQ--NRLPIVVVINKVDR 261 (971)
T ss_pred eeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HHHHHHh--ccCcEEEEEehhHH
Confidence 578999999999888888899999999999999888876432 2222222 57999999999995
No 303
>PTZ00416 elongation factor 2; Provisional
Probab=97.50 E-value=0.00013 Score=66.04 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=48.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~ 67 (170)
+.|.||||+..|..-....++.+|++|+|+|.++.-.-..-.-| ..+.. .++|+|++.||+|+.
T Consensus 94 i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 94 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH--cCCCEEEEEEChhhh
Confidence 35899999999877777788999999999999875433332223 33333 368999999999986
No 304
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.48 E-value=0.004 Score=50.72 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=52.3
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF 81 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~ 81 (170)
-|.||+|--.- .......+|.+++|.+....+.+..+. ..+.+ +.-++|.||+|+.. .... .....++
T Consensus 152 viieT~Gv~qs---~~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E----~aDIiVVNKaDl~~-~~~a-~~~~~el 219 (332)
T PRK09435 152 ILVETVGVGQS---ETAVAGMVDFFLLLQLPGAGDELQGIK---KGIME----LADLIVINKADGDN-KTAA-RRAAAEY 219 (332)
T ss_pred EEEECCCCccc---hhHHHHhCCEEEEEecCCchHHHHHHH---hhhhh----hhheEEeehhcccc-hhHH-HHHHHHH
Confidence 47889885421 112456799999996644444443322 22222 22378999999865 2211 1111122
Q ss_pred HHhcC---------CCeEEEcccCCcchhhhHH
Q psy17235 82 WSRRS---------SRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 82 a~~~~---------~~~~~e~Sa~~~~~v~~~~ 105 (170)
...+. .+.++.+||+++.||++..
T Consensus 220 ~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~ 252 (332)
T PRK09435 220 RSALRLLRPKDPGWQPPVLTCSALEGEGIDEIW 252 (332)
T ss_pred HHHHhcccccccCCCCCEEEEECCCCCCHHHHH
Confidence 22221 1457789999999999873
No 305
>KOG0705|consensus
Probab=97.47 E-value=0.00042 Score=59.22 Aligned_cols=89 Identities=13% Similarity=0.311 Sum_probs=71.8
Q ss_pred hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCC-CCCCCHHHHHHHHHhcCCCeEEE
Q psy17235 16 TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGT-TPQVTEADMENFWSRRSSRRFKP 92 (170)
Q Consensus 16 ~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~-~~~v~~~~~~~~a~~~~~~~~~e 92 (170)
-..|..+.|++|+||.+.+..||+.+..+...+..+. ..+|++++|++-=...+ .+.+....+.+++..+.-..|++
T Consensus 89 ~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~e 168 (749)
T KOG0705|consen 89 DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYE 168 (749)
T ss_pred hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceee
Confidence 3557788999999999999999999988777766554 68999999988544321 56777788888888777777888
Q ss_pred cccCCcchhhhH
Q psy17235 93 QEVVEPQEVVEA 104 (170)
Q Consensus 93 ~Sa~~~~~v~~~ 104 (170)
+.+.+|.||..+
T Consensus 169 t~atyGlnv~rv 180 (749)
T KOG0705|consen 169 TCATYGLNVERV 180 (749)
T ss_pred cchhhhhhHHHH
Confidence 999999999987
No 306
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.46 E-value=0.00092 Score=55.74 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=26.7
Q ss_pred CeEEecCCc----cccccchhhh---ccCCcEEEEEEeCC
Q psy17235 1 MQLWDTGGM----ERVASITSSY---YKFAEAAILVFSLD 33 (170)
Q Consensus 1 l~iwDt~G~----e~~~~~~~~~---~~~ad~iilv~D~t 33 (170)
+++|||||. .....+...+ ++++|++++|+|+.
T Consensus 74 i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 74 VELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred EEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 479999994 4455566667 88999999999997
No 307
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.41 E-value=0.0013 Score=49.47 Aligned_cols=96 Identities=13% Similarity=0.111 Sum_probs=60.6
Q ss_pred eEEecCC----------ccccccchhhhccC---CcEEEEEEeCCChhhHHHH--HHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 2 QLWDTGG----------MERVASITSSYYKF---AEAAILVFSLDNAASFHVL--SQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 2 ~iwDt~G----------~e~~~~~~~~~~~~---ad~iilv~D~t~~~Sf~~~--~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
.+.|.|| ++.+..+...|++. -.+++++.|...+-.-.+. -+|+.+ .++|++|+.||+|.
T Consensus 73 ~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~-----~~i~~~vv~tK~DK 147 (200)
T COG0218 73 RLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE-----LGIPVIVVLTKADK 147 (200)
T ss_pred EEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH-----cCCCeEEEEEcccc
Confidence 5789998 45666777778764 5788899998876554332 234333 48999999999996
Q ss_pred CCCCCCCCHHHHHHHHHhcCC----C-eEEEcccCCcchhhhH
Q psy17235 67 EGTTPQVTEADMENFWSRRSS----R-RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 67 ~~~~~~v~~~~~~~~a~~~~~----~-~~~e~Sa~~~~~v~~~ 104 (170)
.. ..... ......++..+. . .+...|+.++.|+++.
T Consensus 148 i~-~~~~~-k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l 188 (200)
T COG0218 148 LK-KSERN-KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDEL 188 (200)
T ss_pred CC-hhHHH-HHHHHHHHHhcCCCCccceEEEEecccccCHHHH
Confidence 54 11111 112233333322 1 2556688888888875
No 308
>PRK01889 GTPase RsgA; Reviewed
Probab=97.39 E-value=0.0013 Score=54.18 Aligned_cols=78 Identities=12% Similarity=0.088 Sum_probs=52.0
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH-hcCCCeEEEcccCCc
Q psy17235 20 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS-RRSSRRFKPQEVVEP 98 (170)
Q Consensus 20 ~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~-~~~~~~~~e~Sa~~~ 98 (170)
..++|.+++|+++..+-+...+..++..+.. .++|.+||.||+||.+ . ..+....+.. ..+.+ .+.+|++++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~--~~i~piIVLNK~DL~~-~---~~~~~~~~~~~~~g~~-Vi~vSa~~g 182 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE--SGAEPVIVLTKADLCE-D---AEEKIAEVEALAPGVP-VLAVSALDG 182 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH--cCCCEEEEEEChhcCC-C---HHHHHHHHHHhCCCCc-EEEEECCCC
Confidence 4789999999999755555556666555444 3678899999999975 2 1112222222 23444 456899999
Q ss_pred chhhhH
Q psy17235 99 QEVVEA 104 (170)
Q Consensus 99 ~~v~~~ 104 (170)
.++++.
T Consensus 183 ~gl~~L 188 (356)
T PRK01889 183 EGLDVL 188 (356)
T ss_pred ccHHHH
Confidence 998875
No 309
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.39 E-value=0.00073 Score=46.09 Aligned_cols=58 Identities=22% Similarity=0.221 Sum_probs=37.3
Q ss_pred CeEEecCCccc----------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeC
Q psy17235 1 MQLWDTGGMER----------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNK 63 (170)
Q Consensus 1 l~iwDt~G~e~----------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK 63 (170)
+.++||||-.. +..... .+..+|++++|+|.+++.. +.....+..+. .+.|+++|.||
T Consensus 49 ~~~vDtpG~~~~~~~~~~~~~~~~~~~-~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 49 FILVDTPGINDGESQDNDGKEIRKFLE-QISKSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp EEEEESSSCSSSSHHHHHHHHHHHHHH-HHCTESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred EEEEeCCCCcccchhhHHHHHHHHHHH-HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 36899999532 112223 3478999999999887422 22223333332 57999999998
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.37 E-value=0.008 Score=48.22 Aligned_cols=92 Identities=18% Similarity=0.128 Sum_probs=52.0
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH--H---
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE--A--- 76 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~--~--- 76 (170)
-|.||+|.-. ........+|.++++-+ +.+-+.+......+ .+.|.++|.||+|+.. ...... .
T Consensus 130 viidT~G~~~---~e~~i~~~aD~i~vv~~---~~~~~el~~~~~~l----~~~~~ivv~NK~Dl~~-~~~~~~~~~~~~ 198 (300)
T TIGR00750 130 IIVETVGVGQ---SEVDIANMADTFVVVTI---PGTGDDLQGIKAGL----MEIADIYVVNKADGEG-ATNVTIARLMLA 198 (300)
T ss_pred EEEeCCCCch---hhhHHHHhhceEEEEec---CCccHHHHHHHHHH----hhhccEEEEEcccccc-hhHHHHHHHHHH
Confidence 4789988431 11224566788887743 33444443333333 2577899999999875 211110 0
Q ss_pred -HHHHHHHh-cCC-CeEEEcccCCcchhhhH
Q psy17235 77 -DMENFWSR-RSS-RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 -~~~~~a~~-~~~-~~~~e~Sa~~~~~v~~~ 104 (170)
....+... .+. +.++.+||+++.|+++.
T Consensus 199 ~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L 229 (300)
T TIGR00750 199 LALEEIRRREDGWRPPVLTTSAVEGRGIDEL 229 (300)
T ss_pred HHHhhccccccCCCCCEEEEEccCCCCHHHH
Confidence 00111111 121 34788999999999987
No 311
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.00049 Score=61.03 Aligned_cols=65 Identities=17% Similarity=0.089 Sum_probs=52.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
++|.|||||-.|..-....++-.||+++|+|...--..+.-.-|... .+ .++|.+++.||+|...
T Consensus 78 iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa-~~--~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 78 INLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA-DK--YGVPRILFVNKMDRLG 142 (697)
T ss_pred EEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHH-hh--cCCCeEEEEECccccc
Confidence 47899999999999888899999999999999876555444455433 33 3799999999999765
No 312
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.30 E-value=0.0022 Score=48.54 Aligned_cols=75 Identities=9% Similarity=0.012 Sum_probs=46.1
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcC-CCeEEEcccCCcch
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRS-SRRFKPQEVVEPQE 100 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~-~~~~~e~Sa~~~~~ 100 (170)
..+..+.|+|+++...... .. ... ...|.++++||+|+.+ .......+..+..+..+ ...++++||+++.|
T Consensus 123 ~~~~~i~Vvd~~~~d~~~~--~~-~~~----~~~a~iiv~NK~Dl~~-~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~g 194 (207)
T TIGR00073 123 GEHMRVVLLSVTEGDDKPL--KY-PGM----FKEADLIVINKADLAE-AVGFDVEKMKADAKKINPEAEIILMSLKTGEG 194 (207)
T ss_pred ccCeEEEEEecCcccchhh--hh-HhH----HhhCCEEEEEHHHccc-cchhhHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence 3555667888876543211 00 111 2467899999999975 33333444554444443 23578899999999
Q ss_pred hhhH
Q psy17235 101 VVEA 104 (170)
Q Consensus 101 v~~~ 104 (170)
+++.
T Consensus 195 v~~l 198 (207)
T TIGR00073 195 LDEW 198 (207)
T ss_pred HHHH
Confidence 9976
No 313
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.26 E-value=0.0014 Score=52.30 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=50.1
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccC
Q psy17235 17 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVV 96 (170)
Q Consensus 17 ~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~ 96 (170)
...+..+|++++|+|..++.+.++ .++.+.. .+.|+++|.||+|+.+ ... .+...++.++.+. .++.+||+
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL~~-~~~--~~~~~~~~~~~~~-~vi~vSa~ 89 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDLAD-PEV--TKKWIEYFEEQGI-KALAINAK 89 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhcCC-HHH--HHHHHHHHHHcCC-eEEEEECC
Confidence 445789999999999988765433 2232222 3689999999999854 111 1111111223343 35567999
Q ss_pred CcchhhhH
Q psy17235 97 EPQEVVEA 104 (170)
Q Consensus 97 ~~~~v~~~ 104 (170)
++.++.+.
T Consensus 90 ~~~gi~~L 97 (287)
T PRK09563 90 KGQGVKKI 97 (287)
T ss_pred CcccHHHH
Confidence 99998764
No 314
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.18 E-value=0.0036 Score=50.51 Aligned_cols=40 Identities=20% Similarity=0.201 Sum_probs=30.2
Q ss_pred eEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 56 KIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 56 pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
|.++|.||.|+.+ .++...+.+.. .++..||+.+-|+++.
T Consensus 241 p~l~v~NKiD~~~------~e~~~~l~~~~---~~v~isa~~~~nld~L 280 (365)
T COG1163 241 PALYVVNKIDLPG------LEELERLARKP---NSVPISAKKGINLDEL 280 (365)
T ss_pred eeEEEEecccccC------HHHHHHHHhcc---ceEEEecccCCCHHHH
Confidence 7889999999754 45666666655 4556799999999874
No 315
>KOG1490|consensus
Probab=97.12 E-value=0.0036 Score=53.23 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=57.5
Q ss_pred cEEEEEEeCCCh--hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHH--HHHHhcCCCeEEEcccCCcc
Q psy17235 24 EAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADME--NFWSRRSSRRFKPQEVVEPQ 99 (170)
Q Consensus 24 d~iilv~D~t~~--~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~--~~a~~~~~~~~~e~Sa~~~~ 99 (170)
.+|+++-|++.. -|...--.++..|.....|-|+|+|.||+|+-. ...++++... +...+-+...++++|+.+.+
T Consensus 249 aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~-~edL~~~~~~ll~~~~~~~~v~v~~tS~~~ee 327 (620)
T KOG1490|consen 249 SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMR-PEDLDQKNQELLQTIIDDGNVKVVQTSCVQEE 327 (620)
T ss_pred hhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccC-ccccCHHHHHHHHHHHhccCceEEEecccchh
Confidence 568889998864 455554566777776668999999999999876 5566665433 22233333357789999999
Q ss_pred hhhhH
Q psy17235 100 EVVEA 104 (170)
Q Consensus 100 ~v~~~ 104 (170)
||..+
T Consensus 328 gVm~V 332 (620)
T KOG1490|consen 328 GVMDV 332 (620)
T ss_pred ceeeH
Confidence 99986
No 316
>KOG0458|consensus
Probab=97.09 E-value=0.002 Score=55.33 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=66.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHH---HHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFH---VLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~---~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~ 74 (170)
+.|.|+||+..|..-.-.-...||+.+||.|.+-- ..|+ .++. ...+.+...---++|+.||.|+.+ ..+-.
T Consensus 257 ~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~Lgi~qlivaiNKmD~V~-Wsq~R 334 (603)
T KOG0458|consen 257 VTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSLGISQLIVAINKMDLVS-WSQDR 334 (603)
T ss_pred EEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHcCcceEEEEeecccccC-ccHHH
Confidence 46899999999877666667889999999998752 2232 1111 222333334446788899999876 43333
Q ss_pred HHHHH----HHH-HhcCC----CeEEEcccCCcchhhhH
Q psy17235 75 EADME----NFW-SRRSS----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 75 ~~~~~----~~a-~~~~~----~~~~e~Sa~~~~~v~~~ 104 (170)
.+++. -|. +..|+ -.|++||+.+|+|+...
T Consensus 335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 33322 233 44454 26999999999998754
No 317
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.05 E-value=0.0011 Score=48.02 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=43.2
Q ss_pred CeEEecCCcc----ccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCC
Q psy17235 1 MQLWDTGGME----RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKS 64 (170)
Q Consensus 1 l~iwDt~G~e----~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~ 64 (170)
+.|+||||-. ....++..|+..+|++|+|.+.+...+-.....|....... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 4689999963 23467888999999999999999866655544555444433 33388888884
No 318
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.02 E-value=0.0088 Score=43.92 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=57.6
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF 81 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~ 81 (170)
-|.|||+... ......+..+|.++++...+ ..+...+..+++.+... +.|+.+|.|++|... . ...+..++
T Consensus 96 viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~--~~~~~vV~N~~~~~~---~-~~~~~~~~ 166 (179)
T cd03110 96 IIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF--GIPVGVVINKYDLND---E-IAEEIEDY 166 (179)
T ss_pred EEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc--CCCEEEEEeCCCCCc---c-hHHHHHHH
Confidence 4789997642 22334568899999999877 45777777777766554 567889999999643 1 34567778
Q ss_pred HHhcCCCeEE
Q psy17235 82 WSRRSSRRFK 91 (170)
Q Consensus 82 a~~~~~~~~~ 91 (170)
.++.|.+.+-
T Consensus 167 ~~~~~~~vl~ 176 (179)
T cd03110 167 CEEEGIPILG 176 (179)
T ss_pred HHHcCCCeEE
Confidence 8888887543
No 319
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.91 E-value=0.011 Score=45.34 Aligned_cols=98 Identities=8% Similarity=0.095 Sum_probs=54.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeE-EEEeeCCCCCCCCCCCC--HHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNKSDLEGTTPQVT--EAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pv-vlvgnK~Dl~~~~~~v~--~~~ 77 (170)
+.++||||.- ..+.. ..+.+|++++|+|.+........ ..+..+.. .+.|. ++|.||.|+.++..... ..+
T Consensus 85 i~~vDtPg~~--~~~l~-~ak~aDvVllviDa~~~~~~~~~-~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~ 158 (225)
T cd01882 85 LTFIECPNDI--NAMID-IAKVADLVLLLIDASFGFEMETF-EFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRKTKKR 158 (225)
T ss_pred EEEEeCCchH--HHHHH-HHHhcCEEEEEEecCcCCCHHHH-HHHHHHHH--cCCCeEEEEEeccccCCcHHHHHHHHHH
Confidence 3578999853 23332 35789999999999865443221 22233322 24664 55999999864111111 112
Q ss_pred HHH-HHHh-cCCCeEEEcccCCcchhhhH
Q psy17235 78 MEN-FWSR-RSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~-~a~~-~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+. +..+ .....++..||+++-.+...
T Consensus 159 l~~~~~~~~~~~~ki~~iSa~~~~~~~~~ 187 (225)
T cd01882 159 LKHRFWTEVYQGAKLFYLSGIVHGRYPKT 187 (225)
T ss_pred HHHHHHHhhCCCCcEEEEeeccCCCCCHH
Confidence 222 3222 23345777899988665543
No 320
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0044 Score=51.78 Aligned_cols=97 Identities=14% Similarity=0.082 Sum_probs=63.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLD---NAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t---~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+.|.|+||++++-+..-.-....|..++|+|.+ .+++.+.+. +.....-.-.++|.||+|..+ ...+. +.
T Consensus 52 ~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~-----iLdllgi~~giivltk~D~~d-~~r~e-~~ 124 (447)
T COG3276 52 MGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLL-----ILDLLGIKNGIIVLTKADRVD-EARIE-QK 124 (447)
T ss_pred eEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHH-----HHHhcCCCceEEEEecccccc-HHHHH-HH
Confidence 358999999998776666677899999999995 456665542 122222334588999999876 22111 11
Q ss_pred HHHHHHh--cCCCeEEEcccCCcchhhhH
Q psy17235 78 MENFWSR--RSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~--~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+.... +....++.+|+++|+||++.
T Consensus 125 i~~Il~~l~l~~~~i~~~s~~~g~GI~~L 153 (447)
T COG3276 125 IKQILADLSLANAKIFKTSAKTGRGIEEL 153 (447)
T ss_pred HHHHHhhcccccccccccccccCCCHHHH
Confidence 2222222 22334678999999999975
No 321
>KOG0099|consensus
Probab=96.73 E-value=0.0026 Score=50.04 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=48.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----------~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~ 67 (170)
|+++|.+||..-+.-|-..+.+..++|+|...++- ..++....++..+=+.. ..+.+||..||.|+-
T Consensus 204 FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDll 282 (379)
T KOG0099|consen 204 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 282 (379)
T ss_pred eeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHH
Confidence 57899999998889999999999999999887641 12222222222222222 468899999999984
No 322
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.68 E-value=0.016 Score=46.50 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=57.3
Q ss_pred chhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEc
Q psy17235 15 ITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQ 93 (170)
Q Consensus 15 ~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~ 93 (170)
+.+.-..+.|-.+++++..+|+ |...+.+++-.... .++..||+.||+|+.+ ......++......+.|.+.+ .+
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~-~~~~~~~~~~~~y~~~gy~v~-~~ 147 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLD-DEEAAVKELLREYEDIGYPVL-FV 147 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEccccCc-chHHHHHHHHHHHHhCCeeEE-Ee
Confidence 3333444577788888888875 66666666543322 4777788899999987 222222455666777888655 57
Q ss_pred ccCCcchhhhH
Q psy17235 94 EVVEPQEVVEA 104 (170)
Q Consensus 94 Sa~~~~~v~~~ 104 (170)
|++++.++.+.
T Consensus 148 s~~~~~~~~~l 158 (301)
T COG1162 148 SAKNGDGLEEL 158 (301)
T ss_pred cCcCcccHHHH
Confidence 99999888876
No 323
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.0026 Score=50.80 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=57.3
Q ss_pred EEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCC--CCCHH
Q psy17235 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTP--QVTEA 76 (170)
Q Consensus 3 iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~--~v~~~ 76 (170)
..|+||+..|....-.--.+.||.|||++.+| |++-+++. + .++ -.+| ++++.||+|+.++.. ..-..
T Consensus 79 hVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--l--arq--vGvp~ivvflnK~Dmvdd~ellelVem 152 (394)
T COG0050 79 HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--L--ARQ--VGVPYIVVFLNKVDMVDDEELLELVEM 152 (394)
T ss_pred eccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--h--hhh--cCCcEEEEEEecccccCcHHHHHHHHH
Confidence 47999999886644444567899999999998 45555431 1 112 2454 567799999987311 12335
Q ss_pred HHHHHHHhcCCC----eEEEcccC
Q psy17235 77 DMENFWSRRSSR----RFKPQEVV 96 (170)
Q Consensus 77 ~~~~~a~~~~~~----~~~e~Sa~ 96 (170)
+.+++...++++ .....||.
T Consensus 153 EvreLLs~y~f~gd~~Pii~gSal 176 (394)
T COG0050 153 EVRELLSEYGFPGDDTPIIRGSAL 176 (394)
T ss_pred HHHHHHHHcCCCCCCcceeechhh
Confidence 677888888875 34444543
No 324
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.65 E-value=0.012 Score=48.76 Aligned_cols=100 Identities=15% Similarity=0.041 Sum_probs=63.2
Q ss_pred eEEecCCcccccc--chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-------
Q psy17235 2 QLWDTGGMERVAS--ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ------- 72 (170)
Q Consensus 2 ~iwDt~G~e~~~~--~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~------- 72 (170)
.+.||.|+|.|-. ++...-...|..+++...+|--+--. +..+--... -..|++++.+|+|+..+.+.
T Consensus 204 sfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~a--~~lPviVvvTK~D~~~ddr~~~v~~ei 280 (527)
T COG5258 204 SFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIALA--MELPVIVVVTKIDMVPDDRFQGVVEEI 280 (527)
T ss_pred EEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhhh--hcCCEEEEEEecccCcHHHHHHHHHHH
Confidence 5899999999843 56666678999999999887544321 222222111 37999999999999764111
Q ss_pred -------------C-CHHHHHH--HH-Hhc-CCCeEEEcccCCcchhhhH
Q psy17235 73 -------------V-TEADMEN--FW-SRR-SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 -------------v-~~~~~~~--~a-~~~-~~~~~~e~Sa~~~~~v~~~ 104 (170)
| +..+... .+ +.. +.-..+.+|+.+|++.+-.
T Consensus 281 ~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL 330 (527)
T COG5258 281 SALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL 330 (527)
T ss_pred HHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH
Confidence 1 1112211 11 111 2345778899999998854
No 325
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.0056 Score=51.33 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=60.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+.|.|||||+.|..-.-..+.-+|..+.|.|...- ++. ++++ +-+. .++|++-..||.|... . -+.+-
T Consensus 83 iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~----KLfe-Vcrl-R~iPI~TFiNKlDR~~-r--dP~EL 153 (528)
T COG4108 83 VNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL----KLFE-VCRL-RDIPIFTFINKLDREG-R--DPLEL 153 (528)
T ss_pred EeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHH----HHHH-HHhh-cCCceEEEeecccccc-C--ChHHH
Confidence 46899999999977666667789999999998753 332 2221 2121 5899999999999876 2 23344
Q ss_pred HHHHHHhcCCCe----EEEcccCCcchhh
Q psy17235 78 MENFWSRRSSRR----FKPQEVVEPQEVV 102 (170)
Q Consensus 78 ~~~~a~~~~~~~----~~e~Sa~~~~~v~ 102 (170)
..++-+.+++.. |..-..++-.||.
T Consensus 154 LdEiE~~L~i~~~PitWPIG~gk~F~Gvy 182 (528)
T COG4108 154 LDEIEEELGIQCAPITWPIGMGKDFKGVY 182 (528)
T ss_pred HHHHHHHhCcceecccccccCCcccceee
Confidence 455555555522 2223455555544
No 326
>KOG3905|consensus
Probab=96.52 E-value=0.032 Score=45.37 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=66.4
Q ss_pred eEEecCCccccccchhhhccCC----cEEEEEEeCCChh-hHHHHHHHHHHHHhhC------------------------
Q psy17235 2 QLWDTGGMERVASITSSYYKFA----EAAILVFSLDNAA-SFHVLSQHLLEIVTYA------------------------ 52 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~a----d~iilv~D~t~~~-Sf~~~~~~~~~i~~~~------------------------ 52 (170)
.+|=.-|......+.+..+... -.+|++.|+++|. -+++++.|..-+.++.
T Consensus 103 ~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeY 182 (473)
T KOG3905|consen 103 NVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEY 182 (473)
T ss_pred ceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 3566666544444444443322 4688999999995 4678888865433221
Q ss_pred --------------------------------------CCCeEEEEeeCCCCCCC---CCCCC-------HHHHHHHHHh
Q psy17235 53 --------------------------------------ENAKIFLCGNKSDLEGT---TPQVT-------EADMENFWSR 84 (170)
Q Consensus 53 --------------------------------------~~~pvvlvgnK~Dl~~~---~~~v~-------~~~~~~~a~~ 84 (170)
-.+|++||.+|||...- ..... ...++.||-.
T Consensus 183 vep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr 262 (473)
T KOG3905|consen 183 VEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLR 262 (473)
T ss_pred cCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHH
Confidence 02379999999998320 11111 2347889999
Q ss_pred cCCCeEEEcccCCcchhhhH
Q psy17235 85 RSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 85 ~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+|...++ +|+|..+|++-.
T Consensus 263 ~GaaLiy-TSvKE~KNidll 281 (473)
T KOG3905|consen 263 YGAALIY-TSVKETKNIDLL 281 (473)
T ss_pred cCceeEE-eecccccchHHH
Confidence 9997655 799999999965
No 327
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.40 E-value=0.012 Score=45.84 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=41.5
Q ss_pred CeEEecCCccc-------------cccchhhhccC-CcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 1 MQLWDTGGMER-------------VASITSSYYKF-AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 1 l~iwDt~G~e~-------------~~~~~~~~~~~-ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
|.+.||||-.. ...+...|+++ .+.+++|.|.+..-+=.........+.. ...|+++|.||+|.
T Consensus 127 ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~D~ 204 (240)
T smart00053 127 LTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKLDL 204 (240)
T ss_pred eEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECCCC
Confidence 57899999642 22366778884 4588999987542221121222222222 36899999999998
Q ss_pred CC
Q psy17235 67 EG 68 (170)
Q Consensus 67 ~~ 68 (170)
.+
T Consensus 205 ~~ 206 (240)
T smart00053 205 MD 206 (240)
T ss_pred CC
Confidence 65
No 328
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.40 E-value=0.07 Score=39.77 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=46.2
Q ss_pred CeEEecCCccccc--------cc---hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCC
Q psy17235 1 MQLWDTGGMERVA--------SI---TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDL 66 (170)
Q Consensus 1 l~iwDt~G~e~~~--------~~---~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl 66 (170)
+.++||||-.... .+ ......++|++++|.+..+ .+-+. ...+..+.+.. .-.++++|.|+.|.
T Consensus 51 i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~ 128 (196)
T cd01852 51 VNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDD 128 (196)
T ss_pred EEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccc
Confidence 4689999954321 11 1223468999999999887 22211 12233333322 12477888899985
Q ss_pred CCCCCCC------CHHHHHHHHHhcCCC
Q psy17235 67 EGTTPQV------TEADMENFWSRRSSR 88 (170)
Q Consensus 67 ~~~~~~v------~~~~~~~~a~~~~~~ 88 (170)
.. ...+ .....+.+.+..+..
T Consensus 129 l~-~~~~~~~~~~~~~~l~~l~~~c~~r 155 (196)
T cd01852 129 LE-GGTLEDYLENSCEALKRLLEKCGGR 155 (196)
T ss_pred cC-CCcHHHHHHhccHHHHHHHHHhCCe
Confidence 44 1111 124455555655543
No 329
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.29 E-value=0.008 Score=48.64 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=62.3
Q ss_pred CeEEecCCccccccchhhhccC---CcEEEEEEeCCC----hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-
Q psy17235 1 MQLWDTGGMERVASITSSYYKF---AEAAILVFSLDN----AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ- 72 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~---ad~iilv~D~t~----~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~- 72 (170)
+.|.|.||||-... .-+.+ -||.+||.+.+. |++-+++.. +.- ..---+|++-||.|+...++.
T Consensus 88 VSfVDaPGHe~LMA---TMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A----leI-igik~iiIvQNKIDlV~~E~Al 159 (415)
T COG5257 88 VSFVDAPGHETLMA---TMLSGAALMDGALLVIAANEPCPQPQTREHLMA----LEI-IGIKNIIIVQNKIDLVSRERAL 159 (415)
T ss_pred EEEeeCCchHHHHH---HHhcchhhhcceEEEEecCCCCCCCchHHHHHH----Hhh-hccceEEEEecccceecHHHHH
Confidence 35899999986533 33444 499999999886 355554322 111 123457889999999762222
Q ss_pred CCHHHHHHHHHhcCC--CeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSS--RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~--~~~~e~Sa~~~~~v~~~ 104 (170)
-+.+++.+|.+---+ ...+..||..+.|++..
T Consensus 160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal 193 (415)
T COG5257 160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDAL 193 (415)
T ss_pred HHHHHHHHHhcccccCCCceeeehhhhccCHHHH
Confidence 234566677665432 24778999999999965
No 330
>KOG1954|consensus
Probab=96.05 E-value=0.15 Score=42.24 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=42.0
Q ss_pred CeEEecCCcc-----------ccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGME-----------RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e-----------~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.|.||||-- .|.....=+...+|.+|++||....+--......+..++.+.. .+=||.||.|..+
T Consensus 149 vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Ed--kiRVVLNKADqVd 225 (532)
T KOG1954|consen 149 VTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHED--KIRVVLNKADQVD 225 (532)
T ss_pred eeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcc--eeEEEeccccccC
Confidence 4689999921 1344455566789999999998765433333444555554433 3445679999655
No 331
>KOG3887|consensus
Probab=95.86 E-value=0.16 Score=39.83 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=45.6
Q ss_pred CeEEecCCcccccc---chhhhccCCcEEEEEEeCCChhhHHHHHHH---HHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVAS---ITSSYYKFAEAAILVFSLDNAASFHVLSQH---LLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~---~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~---~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
|++||.|||-.|-. -....++++-+.|+|.|..+. -.+.+.++ .......+|++.+=+..+|.|-..
T Consensus 77 f~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLs 149 (347)
T KOG3887|consen 77 FQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLS 149 (347)
T ss_pred eEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCc
Confidence 58999999976522 235668899999999998763 23333333 233333338888889999999644
No 332
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=95.83 E-value=0.033 Score=47.52 Aligned_cols=103 Identities=14% Similarity=0.162 Sum_probs=67.8
Q ss_pred CeEEecCCccccccchhhhccC----CcEEEEEEeCCChhhH-HHHHHHHHHHHhh------------------------
Q psy17235 1 MQLWDTGGMERVASITSSYYKF----AEAAILVFSLDNAASF-HVLSQHLLEIVTY------------------------ 51 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~----ad~iilv~D~t~~~Sf-~~~~~~~~~i~~~------------------------ 51 (170)
+.+|-..|...+..+.+..+.. --.+|+|.|++.|.++ +.+..|+.-+..+
T Consensus 75 l~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~ 154 (472)
T PF05783_consen 75 LNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQE 154 (472)
T ss_pred eeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 3688888876666666554442 3578999999999765 4666665322111
Q ss_pred -C-----C---------------------------------CCeEEEEeeCCCCCCC---CCCC-------CHHHHHHHH
Q psy17235 52 -A-----E---------------------------------NAKIFLCGNKSDLEGT---TPQV-------TEADMENFW 82 (170)
Q Consensus 52 -~-----~---------------------------------~~pvvlvgnK~Dl~~~---~~~v-------~~~~~~~~a 82 (170)
. . .+|++||.+|+|.... .... -..-.+.+|
T Consensus 155 Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~c 234 (472)
T PF05783_consen 155 YVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFC 234 (472)
T ss_pred hhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHH
Confidence 0 0 2599999999996321 1111 112377888
Q ss_pred HhcCCCeEEEcccCCcchhhhH
Q psy17235 83 SRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 83 ~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
-.+|+..++ ||++.+.|++..
T Consensus 235 L~yGAsL~y-ts~~~~~n~~~L 255 (472)
T PF05783_consen 235 LKYGASLIY-TSVKEEKNLDLL 255 (472)
T ss_pred HhcCCeEEE-eeccccccHHHH
Confidence 889997665 688999888764
No 333
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=95.54 E-value=0.061 Score=43.47 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=37.3
Q ss_pred CeEEecCCccccccch-------hhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERVASIT-------SSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~-------~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~ 67 (170)
+.||||||......+. ..++ .+.|++++|..++.......-...+..+.... --.++||+.|+.|..
T Consensus 88 l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 88 LNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 4799999976432211 1122 26999999966543211111123334443332 124689999999965
No 334
>COG3596 Predicted GTPase [General function prediction only]
Probab=95.51 E-value=0.021 Score=45.23 Aligned_cols=67 Identities=15% Similarity=0.287 Sum_probs=48.8
Q ss_pred CeEEecCCccc-------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMER-------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~-------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.||||||-+. |+.....++...|.++++.+..|+.=--+. .++.++....-+.|++++.|.+|...
T Consensus 89 l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 89 LVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDE-DFLRDVIILGLDKRVLFVVTQADRAE 162 (296)
T ss_pred eEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCH-HHHHHHHHhccCceeEEEEehhhhhc
Confidence 46999999654 667777888899999999999886422221 34455544444689999999999754
No 335
>KOG1191|consensus
Probab=95.37 E-value=0.038 Score=46.98 Aligned_cols=103 Identities=19% Similarity=0.173 Sum_probs=59.5
Q ss_pred CeEEecCCccc-------ccc--chhhhccCCcEEEEEEeC--CChhhHHHHHHHHHHHHhhC-------CCCeEEEEee
Q psy17235 1 MQLWDTGGMER-------VAS--ITSSYYKFAEAAILVFSL--DNAASFHVLSQHLLEIVTYA-------ENAKIFLCGN 62 (170)
Q Consensus 1 l~iwDt~G~e~-------~~~--~~~~~~~~ad~iilv~D~--t~~~Sf~~~~~~~~~i~~~~-------~~~pvvlvgn 62 (170)
+.+.||+|-.+ -.+ ....-+..||.+++|+|. ++-++-..+.+.+.....-. ..-|++++.|
T Consensus 318 v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~n 397 (531)
T KOG1191|consen 318 VRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVAN 397 (531)
T ss_pred EEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEec
Confidence 35789999544 011 123346789999999998 55444444334444332222 2478999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhc---CCCeEEEcccCCcchhhhH
Q psy17235 63 KSDLEGTTPQVTEADMENFWSRR---SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 63 K~Dl~~~~~~v~~~~~~~~a~~~---~~~~~~e~Sa~~~~~v~~~ 104 (170)
|.|+..+.++.+..-.. +-... ..+...++|+++++++...
T Consensus 398 k~D~~s~~~~~~~~~~~-~~~~~~~~~~~i~~~vs~~tkeg~~~L 441 (531)
T KOG1191|consen 398 KSDLVSKIPEMTKIPVV-YPSAEGRSVFPIVVEVSCTTKEGCERL 441 (531)
T ss_pred hhhccCccccccCCcee-ccccccCcccceEEEeeechhhhHHHH
Confidence 99997632232221111 11111 2234555899999998864
No 336
>KOG0460|consensus
Probab=95.28 E-value=0.044 Score=44.84 Aligned_cols=80 Identities=19% Similarity=0.109 Sum_probs=51.6
Q ss_pred EecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCC--CCCCHHHH
Q psy17235 4 WDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTT--PQVTEADM 78 (170)
Q Consensus 4 wDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~--~~v~~~~~ 78 (170)
.|+||+..|....-.--..-||.|+|+..+|- ++=+++ -..++. .=.-+|+..||.|+.++. ...-+-|+
T Consensus 122 ~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHl----LLArQV-GV~~ivvfiNKvD~V~d~e~leLVEmE~ 196 (449)
T KOG0460|consen 122 TDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHL----LLARQV-GVKHIVVFINKVDLVDDPEMLELVEMEI 196 (449)
T ss_pred CCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHH----HHHHHc-CCceEEEEEecccccCCHHHHHHHHHHH
Confidence 58999988865444445567999999999994 443332 111222 122366778999998532 22334567
Q ss_pred HHHHHhcCCC
Q psy17235 79 ENFWSRRSSR 88 (170)
Q Consensus 79 ~~~a~~~~~~ 88 (170)
+++..++|++
T Consensus 197 RElLse~gf~ 206 (449)
T KOG0460|consen 197 RELLSEFGFD 206 (449)
T ss_pred HHHHHHcCCC
Confidence 8888888873
No 337
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.23 E-value=0.05 Score=44.18 Aligned_cols=89 Identities=15% Similarity=0.084 Sum_probs=57.2
Q ss_pred CCc-cccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhc
Q psy17235 7 GGM-ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRR 85 (170)
Q Consensus 7 ~G~-e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~ 85 (170)
+|+ ..+.......+...|+++-|.|..+|.+..+ ..+.+...+.|.++|+||+|+.. +.+.....+.+.+..
T Consensus 18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~k~~i~vlNK~DL~~--~~~~~~W~~~~~~~~ 90 (322)
T COG1161 18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKEKPKLLVLNKADLAP--KEVTKKWKKYFKKEE 90 (322)
T ss_pred CCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHccCCcEEEEehhhcCC--HHHHHHHHHHHHhcC
Confidence 443 3344455667889999999999999987643 33444444566699999999975 344445555555555
Q ss_pred CCCeEEEcccCCcchhhh
Q psy17235 86 SSRRFKPQEVVEPQEVVE 103 (170)
Q Consensus 86 ~~~~~~e~Sa~~~~~v~~ 103 (170)
+...+ ..+++.+.++..
T Consensus 91 ~~~~~-~v~~~~~~~~~~ 107 (322)
T COG1161 91 GIKPI-FVSAKSRQGGKK 107 (322)
T ss_pred CCccE-EEEeecccCccc
Confidence 44323 246666655553
No 338
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=95.17 E-value=0.31 Score=41.19 Aligned_cols=65 Identities=11% Similarity=0.041 Sum_probs=42.4
Q ss_pred hcc-CCcEEEEEE-eCC----ChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy17235 19 YYK-FAEAAILVF-SLD----NAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSR 88 (170)
Q Consensus 19 ~~~-~ad~iilv~-D~t----~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~ 88 (170)
.+. .++..|+|. |-+ .++.+... ..|+.++... +.|+++|.||+|... .-+.+...++...++.+
T Consensus 140 VI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~--~kPfiivlN~~dp~~---~et~~l~~~l~eky~vp 211 (492)
T TIGR02836 140 VIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKEL--NKPFIILLNSTHPYH---PETEALRQELEEKYDVP 211 (492)
T ss_pred HHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhc--CCCEEEEEECcCCCC---chhHHHHHHHHHHhCCc
Confidence 344 789999888 653 12333333 4777777765 799999999999533 12444455666777876
No 339
>KOG1143|consensus
Probab=95.14 E-value=0.11 Score=43.05 Aligned_cols=101 Identities=19% Similarity=0.110 Sum_probs=62.6
Q ss_pred CeEEecCCccccccchhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC---------
Q psy17235 1 MQLWDTGGMERVASITSSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT--------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~--------- 69 (170)
+.+.|.+|+.+|....-+-+. ..|...+|++...--.. ..+..+.-+.. -++|+.++.+|+|+.+.
T Consensus 251 vTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~A--L~iPfFvlvtK~Dl~~~~~~~~tv~~ 327 (591)
T KOG1143|consen 251 VTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAA--LNIPFFVLVTKMDLVDRQGLKKTVKD 327 (591)
T ss_pred EEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHH--hCCCeEEEEEeeccccchhHHHHHHH
Confidence 468999999998664333333 36778888876543221 12233333333 28999999999999763
Q ss_pred --------------CCCCCHHHHHHHHHhc---CCCeEEEcccCCcchhhhH
Q psy17235 70 --------------TPQVTEADMENFWSRR---SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 --------------~~~v~~~~~~~~a~~~---~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.-+.+++...+++. ++...+..|..+|++..-.
T Consensus 328 l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 328 LSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 1223445555555554 4445667788999887743
No 340
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.06 E-value=0.049 Score=40.18 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=28.5
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 24 EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 24 d~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
|++++|.|..++.+-.+ ..+.+.+.-...+.|+++|.||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999988754322 122222211114689999999999854
No 341
>KOG0467|consensus
Probab=94.72 E-value=0.046 Score=48.71 Aligned_cols=58 Identities=26% Similarity=0.356 Sum_probs=46.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLS-QHLLEIVTYAENAKIFLCGNKSD 65 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~D 65 (170)
+.+.|+|||-.|.+......+-+||+++.+|+.. .++..-++ .|. ....++||.||+|
T Consensus 74 ~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~-------~~~~~~lvinkid 135 (887)
T KOG0467|consen 74 INLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI-------EGLKPILVINKID 135 (887)
T ss_pred EEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH-------ccCceEEEEehhh
Confidence 3689999999999999889999999999999875 34544443 243 3566789999999
No 342
>KOG0465|consensus
Probab=94.65 E-value=0.058 Score=47.06 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=48.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.|.|||||-.|.--....++--||.++|+|....---+...-|. +..++ ++|.|...||.|.-+
T Consensus 106 iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~r-Q~~ry--~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 106 INIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWR-QMKRY--NVPRICFINKMDRMG 170 (721)
T ss_pred eEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHH-HHHhc--CCCeEEEEehhhhcC
Confidence 468999999998777777888899999999876543323333453 34555 799999999999754
No 343
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=94.34 E-value=0.37 Score=45.75 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=44.4
Q ss_pred EEecCCcc--------ccccchhhhcc---------CCcEEEEEEeCCChhh---------HHHHHHHHHHHHhhC-CCC
Q psy17235 3 LWDTGGME--------RVASITSSYYK---------FAEAAILVFSLDNAAS---------FHVLSQHLLEIVTYA-ENA 55 (170)
Q Consensus 3 iwDt~G~e--------~~~~~~~~~~~---------~ad~iilv~D~t~~~S---------f~~~~~~~~~i~~~~-~~~ 55 (170)
++||+|.- .....|..++. ..+|+|+++|+.+.-+ -..++..+.++.+.. -.+
T Consensus 165 liDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~ 244 (1169)
T TIGR03348 165 LIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF 244 (1169)
T ss_pred EEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 68999932 22233444433 4899999999875321 134455666666555 689
Q ss_pred eEEEEeeCCCCCC
Q psy17235 56 KIFLCGNKSDLEG 68 (170)
Q Consensus 56 pvvlvgnK~Dl~~ 68 (170)
||.||.+|+|+..
T Consensus 245 PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 245 PVYLVLTKADLLA 257 (1169)
T ss_pred CEEEEEecchhhc
Confidence 9999999999863
No 344
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=94.11 E-value=0.19 Score=35.45 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=43.4
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE 67 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~ 67 (170)
-|+|+|+.. .......+..+|.++++.+.+ +.++..+...++.+.+.....++.+|.|+.+..
T Consensus 48 VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 48 IIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred EEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 478998753 333456788999999998865 566666555555555444556778899999743
No 345
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=93.82 E-value=1.8 Score=36.08 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=43.9
Q ss_pred CeEEecCCccccccchhh-----hccCCcEEEEEEeCCChhhHHHHHHHH-HHHHhhCCCCeEEEEeeCCCC--CC----
Q psy17235 1 MQLWDTGGMERVASITSS-----YYKFAEAAILVFSLDNAASFHVLSQHL-LEIVTYAENAKIFLCGNKSDL--EG---- 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~-----~~~~ad~iilv~D~t~~~Sf~~~~~~~-~~i~~~~~~~pvvlvgnK~Dl--~~---- 68 (170)
+.+||.||-..-...... -+..-|.||++.+ ..|....-|+ ..+.+. +.|+.+|-+|+|. .+
T Consensus 88 v~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s----~rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~ 161 (376)
T PF05049_consen 88 VTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS----ERFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRR 161 (376)
T ss_dssp EEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES----SS--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC
T ss_pred CeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC----CCCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhcc
Confidence 469999995432222233 3556899888875 3343333333 444444 7899999999995 11
Q ss_pred CCCCCCHH----HHHHHHHh----cC--CCeEEEcccCCcchhh
Q psy17235 69 TTPQVTEA----DMENFWSR----RS--SRRFKPQEVVEPQEVV 102 (170)
Q Consensus 69 ~~~~v~~~----~~~~~a~~----~~--~~~~~e~Sa~~~~~v~ 102 (170)
..+..+.+ ++++.+.+ .| .|..+.+|..+...-+
T Consensus 162 ~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yD 205 (376)
T PF05049_consen 162 KPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYD 205 (376)
T ss_dssp -STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTT
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCC
Confidence 02223332 23333322 23 3567777887765544
No 346
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.57 E-value=1 Score=35.69 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=55.5
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF 81 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~ 81 (170)
-|.|+|-.-. ...-..+.++|.+|+|--.| +..+.+++..++-+... ++|..+|.||.++.. + +.+++
T Consensus 167 ~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~f--~ip~~iViNr~~~g~-----s--~ie~~ 234 (284)
T COG1149 167 LIIDSAAGTG--CPVIASLKGADLAILVTEPT-PFGLHDLKRALELVEHF--GIPTGIVINRYNLGD-----S--EIEEY 234 (284)
T ss_pred eEEecCCCCC--ChHHHhhccCCEEEEEecCC-ccchhHHHHHHHHHHHh--CCceEEEEecCCCCc-----h--HHHHH
Confidence 3677763321 12334578999999996655 46667776666555554 799999999996543 3 88899
Q ss_pred HHhcCCCeEEE
Q psy17235 82 WSRRSSRRFKP 92 (170)
Q Consensus 82 a~~~~~~~~~e 92 (170)
+.+.|++...+
T Consensus 235 ~~e~gi~il~~ 245 (284)
T COG1149 235 CEEEGIPILGE 245 (284)
T ss_pred HHHcCCCeeEE
Confidence 99999987654
No 347
>KOG0461|consensus
Probab=93.52 E-value=0.37 Score=39.73 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=49.4
Q ss_pred CeEEecCCccccccchhhhccC---CcEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC-CCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKF---AEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG-TTPQV 73 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~---ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~-~~~~v 73 (170)
+.+.|+||+. ++.+..+-+ .|..++|.|++.- ++-+.+ .+.++. -...|+|.||.|... ..|.-
T Consensus 72 ~tlvDCPGHa---sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~----c~klvvvinkid~lpE~qr~s 142 (522)
T KOG0461|consen 72 FTLVDCPGHA---SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELL----CKKLVVVINKIDVLPENQRAS 142 (522)
T ss_pred eEEEeCCCcH---HHHHHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhh----ccceEEEEeccccccchhhhh
Confidence 4689999995 445555555 4778999999864 343332 122222 123566778887543 12222
Q ss_pred CHH-HHHHHHHhc------CCCeEEEcccCCc
Q psy17235 74 TEA-DMENFWSRR------SSRRFKPQEVVEP 98 (170)
Q Consensus 74 ~~~-~~~~~a~~~------~~~~~~e~Sa~~~ 98 (170)
.-+ ...++++.+ |-....+.||+.|
T Consensus 143 ki~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G 174 (522)
T KOG0461|consen 143 KIEKSAKKVRKTLESTGFDGNSPIVEVSAADG 174 (522)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCceeEEecCCC
Confidence 212 223333332 2235788999999
No 348
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=93.25 E-value=1.1 Score=34.36 Aligned_cols=60 Identities=22% Similarity=0.382 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q psy17235 101 VVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILK 160 (170)
Q Consensus 101 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 160 (170)
|.++..-...+...|..++...+.++..|...|+..|+.++..-++.+....+..+....
T Consensus 158 v~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We 217 (224)
T cd07623 158 IKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWE 217 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556778899999999999999999999999999999999999998887766543
No 349
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=93.06 E-value=0.65 Score=34.36 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=51.1
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEE
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFK 91 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~ 91 (170)
..|.|+|++|+++..|+..++.-+..+....--=.+.++++-....+ ...|..++..+++..+++|..+
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~~-~~sv~~~~V~kla~~y~~plL~ 132 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRES-HCSVHPNEVRKLAATYNSPLLF 132 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCccc-ccccCHHHHHHHHHHhCCCEEE
Confidence 57999999999999999998877666543331112344555555544 5789999999999999998543
No 350
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=92.42 E-value=0.41 Score=37.47 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=37.2
Q ss_pred CeEEecCCcccccc----------chhhhcc--CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhCC---CCeEEEEeeCC
Q psy17235 1 MQLWDTGGMERVAS----------ITSSYYK--FAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAE---NAKIFLCGNKS 64 (170)
Q Consensus 1 l~iwDt~G~e~~~~----------~~~~~~~--~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~~---~~pvvlvgnK~ 64 (170)
+.+|||||-..... ....|+. ..|++++|..++.. .++.. ...+..+....+ -.++++|.|++
T Consensus 81 i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~ 159 (249)
T cd01853 81 LNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHA 159 (249)
T ss_pred EEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCC
Confidence 46899999654310 0122333 57888888766543 22321 233333433221 24689999999
Q ss_pred CCC
Q psy17235 65 DLE 67 (170)
Q Consensus 65 Dl~ 67 (170)
|..
T Consensus 160 d~~ 162 (249)
T cd01853 160 ASS 162 (249)
T ss_pred ccC
Confidence 974
No 351
>KOG4273|consensus
Probab=92.30 E-value=0.17 Score=39.88 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=33.8
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 23 AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 23 ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
..+++.|||++....+..++.|++...-..-++ ++.+|||.|...
T Consensus 79 l~a~vmvfdlse~s~l~alqdwl~htdinsfdi-llcignkvdrvp 123 (418)
T KOG4273|consen 79 LQAFVMVFDLSEKSGLDALQDWLPHTDINSFDI-LLCIGNKVDRVP 123 (418)
T ss_pred eeeEEEEEeccchhhhHHHHhhccccccccchh-heeccccccccc
Confidence 468999999999999999999987533221122 456799999754
No 352
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=92.21 E-value=0.27 Score=37.09 Aligned_cols=47 Identities=15% Similarity=-0.054 Sum_probs=35.2
Q ss_pred EEEEeeCCCCCCCCCCCCHHHHHHHHHhcCC-CeEEEcccCCcchhhhH
Q psy17235 57 IFLCGNKSDLEGTTPQVTEADMENFWSRRSS-RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 57 vvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~-~~~~e~Sa~~~~~v~~~ 104 (170)
=++|.||.|+.. .-..+.+...+-+++.+. ..|+.+|+++|+|+++.
T Consensus 145 DllVInK~DLa~-~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 145 DLLVINKTDLAP-YVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred eEEEEehHHhHH-HhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHH
Confidence 368899999976 444555666666666643 35778999999999976
No 353
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=91.90 E-value=1.4 Score=34.77 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=39.4
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHH---HHHHhc---CCCeEEEcc
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADME---NFWSRR---SSRRFKPQE 94 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~---~~a~~~---~~~~~~e~S 94 (170)
.-+|.+++|.-..--+..+.++.=+=+ ++=++|.||+|.+.. .-...+.+ .+.... .-|..+.+|
T Consensus 141 ~~aD~~v~v~~Pg~GD~iQ~~KaGimE-------iaDi~vVNKaD~~gA--~~~~~~l~~~l~l~~~~~~~W~ppV~~ts 211 (266)
T PF03308_consen 141 DMADTVVLVLVPGLGDEIQAIKAGIME-------IADIFVVNKADRPGA--DRTVRDLRSMLHLLREREDGWRPPVLKTS 211 (266)
T ss_dssp TTSSEEEEEEESSTCCCCCTB-TTHHH-------H-SEEEEE--SHHHH--HHHHHHHHHHHHHCSTSCTSB--EEEEEB
T ss_pred HhcCeEEEEecCCCccHHHHHhhhhhh-------hccEEEEeCCChHHH--HHHHHHHHHHHhhccccccCCCCCEEEEE
Confidence 457888888776555554433321111 234678899996541 11111222 222211 126788999
Q ss_pred cCCcchhhhH
Q psy17235 95 VVEPQEVVEA 104 (170)
Q Consensus 95 a~~~~~v~~~ 104 (170)
|.++.||++.
T Consensus 212 A~~~~Gi~eL 221 (266)
T PF03308_consen 212 ALEGEGIDEL 221 (266)
T ss_dssp TTTTBSHHHH
T ss_pred eCCCCCHHHH
Confidence 9999999986
No 354
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=91.88 E-value=2.1 Score=30.75 Aligned_cols=81 Identities=11% Similarity=-0.107 Sum_probs=50.4
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF 81 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~ 81 (170)
-|+||||.... .....+..+|.+|++.+.+ ..++..+..+++.+... ...+..+|.|+.+... ....+....+
T Consensus 66 viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~---~~~~~~~~~~ 138 (179)
T cd02036 66 ILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL-GIKVVGVIVNRVRPDM---VEGGDMVEDI 138 (179)
T ss_pred EEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc-CCceEEEEEeCCcccc---cchhhHHHHH
Confidence 47899876433 2344568899999998765 45666666666655543 2234668899998643 2233334455
Q ss_pred HHhcCCCe
Q psy17235 82 WSRRSSRR 89 (170)
Q Consensus 82 a~~~~~~~ 89 (170)
.+.++.+.
T Consensus 139 ~~~~~~~v 146 (179)
T cd02036 139 EEILGVPL 146 (179)
T ss_pred HHHhCCCE
Confidence 56667654
No 355
>KOG0085|consensus
Probab=91.69 E-value=0.031 Score=43.47 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=49.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLD----------NAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t----------~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~ 68 (170)
|.+.|.+||..-+.-|-+.+.+.-.++++..++ +....+.-...+.-|..+. .+.++|+..||.|+.+
T Consensus 201 frmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLE 280 (359)
T KOG0085|consen 201 FRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE 280 (359)
T ss_pred eeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhh
Confidence 468999999888888989999887777765543 2334444445555565555 7899999999999865
No 356
>KOG0459|consensus
Probab=91.65 E-value=0.19 Score=41.97 Aligned_cols=104 Identities=16% Similarity=0.144 Sum_probs=60.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHH--HHHHHhhCCCCeEEEEeeCCCCCCCCCCC--
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQH--LLEIVTYAENAKIFLCGNKSDLEGTTPQV-- 73 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~--~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v-- 73 (170)
+.|.|+||+..|....-.-..+||.-++|.+...- .-|+.=.+- ...+.....---.|++.||+|-+......
T Consensus 159 ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eR 238 (501)
T KOG0459|consen 159 FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNER 238 (501)
T ss_pred EEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhh
Confidence 46899999988855433345678888888876321 122211111 11122222334578889999976521111
Q ss_pred ---CHHHHHHHHHhcCC-----CeEEEcccCCcchhhhH
Q psy17235 74 ---TEADMENFWSRRSS-----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 74 ---~~~~~~~~a~~~~~-----~~~~e~Sa~~~~~v~~~ 104 (170)
..+....|.+..|. ..|+.+|..+|.++.+-
T Consensus 239 y~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~ 277 (501)
T KOG0459|consen 239 YEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDR 277 (501)
T ss_pred HHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhc
Confidence 11234445554443 47999999999998853
No 357
>PHA02518 ParA-like protein; Provisional
Probab=91.57 E-value=1.4 Score=32.69 Aligned_cols=80 Identities=4% Similarity=-0.008 Sum_probs=46.8
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH---HHHHHHHHhhCCCCeE-EEEeeCCCCCCCCCCCCHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL---SQHLLEIVTYAENAKI-FLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~---~~~~~~i~~~~~~~pv-vlvgnK~Dl~~~~~~v~~~~ 77 (170)
-|+||||.. ..+....+..+|.+|++...+ +.++..+ ..++..+....+..|. .++.|+.+... .. ..+
T Consensus 80 viiD~p~~~--~~~~~~~l~~aD~viip~~ps-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~---~~-~~~ 152 (211)
T PHA02518 80 VVVDGAPQD--SELARAALRIADMVLIPVQPS-PFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKNT---QL-YRE 152 (211)
T ss_pred EEEeCCCCc--cHHHHHHHHHCCEEEEEeCCC-hhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCcc---hH-HHH
Confidence 589999863 445666788999999998765 3344433 3444443333344544 46678765432 22 234
Q ss_pred HHHHHHhcCCC
Q psy17235 78 MENFWSRRSSR 88 (170)
Q Consensus 78 ~~~~a~~~~~~ 88 (170)
..+..+..+.+
T Consensus 153 ~~~~l~~~~~~ 163 (211)
T PHA02518 153 ARKALAGYGLP 163 (211)
T ss_pred HHHHHHHcCch
Confidence 55555555554
No 358
>KOG0469|consensus
Probab=91.51 E-value=0.29 Score=42.22 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=52.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHH-H
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADM-E 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~-~ 79 (170)
+.+.|.||+-.|.+-....++-.||.++|+|..+---.+.---+.+.+. ..+.-+|+.||.|..--+-+++.++. +
T Consensus 100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~---ERIkPvlv~NK~DRAlLELq~~~EeLyq 176 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA---ERIKPVLVMNKMDRALLELQLSQEELYQ 176 (842)
T ss_pred EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHH---hhccceEEeehhhHHHHhhcCCHHHHHH
Confidence 4689999999999988889999999999999876422211001111222 24555778999995321346676663 3
Q ss_pred HHHHh
Q psy17235 80 NFWSR 84 (170)
Q Consensus 80 ~~a~~ 84 (170)
.|++.
T Consensus 177 tf~R~ 181 (842)
T KOG0469|consen 177 TFQRI 181 (842)
T ss_pred HHHHH
Confidence 44443
No 359
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=91.40 E-value=1.1 Score=35.49 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=30.6
Q ss_pred CCcEEEEEEeCCChh-------hHHH----HHHHHHHHHhhC-CCCeEEEEeeCCCCCC
Q psy17235 22 FAEAAILVFSLDNAA-------SFHV----LSQHLLEIVTYA-ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 22 ~ad~iilv~D~t~~~-------Sf~~----~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~ 68 (170)
-.+|+|+++|+.+-- .+.. ++.-+.++.+.. -++||.||.||+|+..
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~ 83 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLP 83 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCccc
Confidence 469999999986421 1221 122233343333 6899999999999865
No 360
>KOG1424|consensus
Probab=91.15 E-value=0.37 Score=41.41 Aligned_cols=75 Identities=12% Similarity=0.059 Sum_probs=46.8
Q ss_pred cccchhhhccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHH---HhcC
Q psy17235 12 VASITSSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFW---SRRS 86 (170)
Q Consensus 12 ~~~~~~~~~~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a---~~~~ 86 (170)
++.+|. .+..+|+|+.++|..+|--|.. +..+..++. +....+|+.||.||.. +++...|+ ...+
T Consensus 165 WRQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~d---~~K~~~LLvNKaDLl~------~~qr~aWa~YF~~~n 234 (562)
T KOG1424|consen 165 WRQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD---PSKANVLLVNKADLLP------PEQRVAWAEYFRQNN 234 (562)
T ss_pred HHHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhccc---cccceEEEEehhhcCC------HHHHHHHHHHHHhcC
Confidence 344554 3678999999999999977653 233333322 4466788899999864 34444443 3445
Q ss_pred CCeEEEcccCC
Q psy17235 87 SRRFKPQEVVE 97 (170)
Q Consensus 87 ~~~~~e~Sa~~ 97 (170)
++.++ -||..
T Consensus 235 i~~vf-~SA~~ 244 (562)
T KOG1424|consen 235 IPVVF-FSALA 244 (562)
T ss_pred ceEEE-Eeccc
Confidence 65433 36554
No 361
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=90.81 E-value=0.48 Score=37.97 Aligned_cols=49 Identities=10% Similarity=-0.103 Sum_probs=32.0
Q ss_pred CeEEEEeeCCCCCCCCCCCCHHHHHHHHHhc-CCCeEEEcccCCcchhhhH
Q psy17235 55 AKIFLCGNKSDLEGTTPQVTEADMENFWSRR-SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 55 ~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~-~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+-++|.||+|+.. ...-..+...+..+.. ....++++||++|+|+++.
T Consensus 231 ~ADIVVLNKiDLl~-~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L 280 (290)
T PRK10463 231 AASLMLLNKVDLLP-YLNFDVEKCIACAREVNPEIEIILISATSGEGMDQW 280 (290)
T ss_pred cCcEEEEEhHHcCc-ccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHH
Confidence 56788999999864 2111233333444443 3345888999999999875
No 362
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=90.62 E-value=3 Score=31.81 Aligned_cols=57 Identities=30% Similarity=0.443 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q psy17235 101 VVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVN 157 (170)
Q Consensus 101 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 157 (170)
|.++..-...+...|..+.+..+.++..|...|+..|+++|..-++......+..+.
T Consensus 152 i~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie 208 (216)
T cd07627 152 LEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIE 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566778899999999999999999999999999998777766665554443
No 363
>PTZ00258 GTP-binding protein; Provisional
Probab=90.56 E-value=1.5 Score=36.65 Aligned_cols=44 Identities=11% Similarity=0.054 Sum_probs=26.5
Q ss_pred CCeEEEEeeCC--CCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCc
Q psy17235 54 NAKIFLCGNKS--DLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEP 98 (170)
Q Consensus 54 ~~pvvlvgnK~--Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 98 (170)
.-|+++|+|+. |+.. ...-..+....++...+...++.+||+-.
T Consensus 220 ~KP~iyv~N~~E~D~~~-~~~~~~~~l~~~~~~~~~~~~v~~sa~~E 265 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIR-QKNKWLAKIKEWVGEKGGGPIIPYSAEFE 265 (390)
T ss_pred cCCEEEEEECchhhhcc-cchHHHHHHHHHHHhcCCCeEEEeeHHHH
Confidence 35899999999 7621 11113345566666664335777787654
No 364
>KOG0464|consensus
Probab=90.55 E-value=0.075 Score=44.65 Aligned_cols=65 Identities=17% Similarity=0.091 Sum_probs=49.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.+.||||+-.|.--....++--||++.|||.+-.-.-+.+.-|.+. .+ -++|-....||+|...
T Consensus 104 inlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqa-dk--~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 104 INLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA-DK--FKIPAHCFINKMDKLA 168 (753)
T ss_pred EeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc-cc--cCCchhhhhhhhhhhh
Confidence 46899999999988889999999999999998764333334456432 11 3788888899999643
No 365
>KOG0447|consensus
Probab=90.54 E-value=8 Score=34.12 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=46.7
Q ss_pred cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHh
Q psy17235 12 VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADMENFWSR 84 (170)
Q Consensus 12 ~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~ 84 (170)
..+|...|..+.+++|+|.-= -|.+.-+.-...+...+ .+-..|+|.+|.|+.+ ...-+++.++++..-
T Consensus 438 I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAE-knlA~PdRI~kIleG 508 (980)
T KOG0447|consen 438 IFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAE-KNVASPSRIQQIIEG 508 (980)
T ss_pred HHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhh-hccCCHHHHHHHHhc
Confidence 456889999999999999842 23333233333444333 3567789999999987 666677777766543
No 366
>KOG2484|consensus
Probab=90.33 E-value=0.44 Score=39.76 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=35.7
Q ss_pred hhhhccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 16 TSSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 16 ~~~~~~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
....+..+|+||-|.|..||.+-.. +..| +.+..++-..|+|.||+||..
T Consensus 140 ~rkvve~sDVVleVlDARDPlgtR~~~vE~~---V~~~~gnKkLILVLNK~DLVP 191 (435)
T KOG2484|consen 140 FRKVVEASDVVLEVLDARDPLGTRCPEVEEA---VLQAHGNKKLILVLNKIDLVP 191 (435)
T ss_pred HHHHHhhhheEEEeeeccCCCCCCChhHHHH---HHhccCCceEEEEeehhccCC
Confidence 3444567999999999999977543 2333 223335688999999999864
No 367
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=90.21 E-value=1.3 Score=29.60 Aligned_cols=59 Identities=20% Similarity=0.129 Sum_probs=40.7
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-C-CCeEEEEeeC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-E-NAKIFLCGNK 63 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~-~~pvvlvgnK 63 (170)
-|.|||+... ......+..+|.++++.+. +..|+..+..+++.+.+.. + ...+.+|.|+
T Consensus 46 IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 46 VVVDLGRSLD--EVSLAALDQADRVFLVTQQ-DLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred EEEeCCCCcC--HHHHHHHHHcCeEEEEecC-ChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4789988643 2334467889999998864 4677777777777776654 3 4566677775
No 368
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=89.81 E-value=1.2 Score=33.70 Aligned_cols=93 Identities=15% Similarity=0.095 Sum_probs=43.0
Q ss_pred CeEEecCCcccc--------ccch---hhhccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERV--------ASIT---SSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~--------~~~~---~~~~~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl~ 67 (170)
+.|+||||--.- ..+. .....+.|++++|+..+. -+-.. +-.++..+-...----++||.+..|..
T Consensus 51 v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r-~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~ 129 (212)
T PF04548_consen 51 VTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGR-FTEEDREVLELLQEIFGEEIWKHTIVVFTHADEL 129 (212)
T ss_dssp EEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGG
T ss_pred EEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCc-chHHHHHHHHHHHHHccHHHHhHhhHHhhhcccc
Confidence 468999993211 1111 123457999999999883 23222 122333322111011356667777754
Q ss_pred CCCCCC----C---HHHHHHHHHhcCCCeEEEcccC
Q psy17235 68 GTTPQV----T---EADMENFWSRRSSRRFKPQEVV 96 (170)
Q Consensus 68 ~~~~~v----~---~~~~~~~a~~~~~~~~~e~Sa~ 96 (170)
. ...+ . ....+.+.+..+.. |...+.+
T Consensus 130 ~-~~~~~~~l~~~~~~~l~~li~~c~~R-~~~f~n~ 163 (212)
T PF04548_consen 130 E-DDSLEDYLKKESNEALQELIEKCGGR-YHVFNNK 163 (212)
T ss_dssp T-TTTHHHHHHHHHHHHHHHHHHHTTTC-EEECCTT
T ss_pred c-cccHHHHHhccCchhHhHHhhhcCCE-EEEEecc
Confidence 4 2221 1 12355666767764 4444443
No 369
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=89.65 E-value=1.3 Score=34.62 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=44.8
Q ss_pred EEec-CCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235 3 LWDT-GGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF 81 (170)
Q Consensus 3 iwDt-~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~ 81 (170)
|.|| +|-|.|. +-..+++|.+|.|.|.+- .|+....+. .++.+...=-++.+|.||.|-. .......
T Consensus 138 ivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri-~~L~~elg~k~i~~V~NKv~e~-------e~~~~~~ 205 (255)
T COG3640 138 IVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEELGIKRIFVVLNKVDEE-------EELLREL 205 (255)
T ss_pred EEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHHhCCceEEEEEeeccch-------hHHHHhh
Confidence 6777 6777663 334678999999999764 455444332 2222222226788999999843 3445555
Q ss_pred HHhcCC
Q psy17235 82 WSRRSS 87 (170)
Q Consensus 82 a~~~~~ 87 (170)
+.+.+.
T Consensus 206 ~~~~~~ 211 (255)
T COG3640 206 AEELGL 211 (255)
T ss_pred hhccCC
Confidence 656554
No 370
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=89.21 E-value=3.1 Score=34.45 Aligned_cols=78 Identities=13% Similarity=0.024 Sum_probs=56.3
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
.++|.| + ........++.++|-+++|.+.+ -.|+.+.++.+..+.+.. ++.|..+|.|+.+... ..+ ...
T Consensus 221 vV~Dlp-~-~~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~---~~~---~~d 291 (366)
T COG4963 221 VVVDLP-N-IWTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRPNDPKPILVLNRVGVPK---RPE---PSD 291 (366)
T ss_pred EEEcCC-C-ccchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCC---CCC---HHH
Confidence 577877 2 23445577899999999999864 578888889999988887 6778889999998644 333 333
Q ss_pred HHHhcCCC
Q psy17235 81 FWSRRSSR 88 (170)
Q Consensus 81 ~a~~~~~~ 88 (170)
+....+++
T Consensus 292 l~~~~~i~ 299 (366)
T COG4963 292 LEEILGIE 299 (366)
T ss_pred HHHHhCCc
Confidence 44445543
No 371
>KOG2423|consensus
Probab=88.08 E-value=2.9 Score=35.24 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=52.8
Q ss_pred cchhhhcc---CCcEEEEEEeCCChhhH--HHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy17235 14 SITSSYYK---FAEAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSR 88 (170)
Q Consensus 14 ~~~~~~~~---~ad~iilv~D~t~~~Sf--~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~ 88 (170)
.+|.-.|+ .+|++|-|.|..||.-- ..+..++ ....+.--+|+|.|||||.. .-|+......+++++--.
T Consensus 202 RIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~yl---kke~phKHli~vLNKvDLVP--twvt~~Wv~~lSkeyPTi 276 (572)
T KOG2423|consen 202 RIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYL---KKEKPHKHLIYVLNKVDLVP--TWVTAKWVRHLSKEYPTI 276 (572)
T ss_pred HHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHH---hhcCCcceeEEEeecccccc--HHHHHHHHHHHhhhCcce
Confidence 35544444 78999999999998532 2333332 33336777999999999974 456666677777776554
Q ss_pred eEEEcccCCcch
Q psy17235 89 RFKPQEVVEPQE 100 (170)
Q Consensus 89 ~~~e~Sa~~~~~ 100 (170)
.|. .|..++-|
T Consensus 277 AfH-Asi~nsfG 287 (572)
T KOG2423|consen 277 AFH-ASINNSFG 287 (572)
T ss_pred eee-hhhcCccc
Confidence 554 45555544
No 372
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=87.97 E-value=3.9 Score=31.15 Aligned_cols=81 Identities=21% Similarity=0.162 Sum_probs=48.4
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh-hCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~-~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
-|.|||+. ...+....+..+|.++++...+ ..++..+..-+..+.. .....++-+|.|+.|... .+..+-...
T Consensus 118 viiD~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~~---~~~~~~~~~ 191 (246)
T TIGR03371 118 VLIDVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGSGPRIGPHFLINQFDPAR---QLSRDVRAV 191 (246)
T ss_pred EEEECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcccccccceEEeeccCcch---hhHHHHHHH
Confidence 47899984 2345566778999999998764 5566666533333333 224455678899998543 333333334
Q ss_pred HHHhcCCC
Q psy17235 81 FWSRRSSR 88 (170)
Q Consensus 81 ~a~~~~~~ 88 (170)
+.+.++.+
T Consensus 192 ~~~~~~~~ 199 (246)
T TIGR03371 192 LRQTLGSR 199 (246)
T ss_pred HHHHhccc
Confidence 44555553
No 373
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=87.31 E-value=10 Score=28.41 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=49.2
Q ss_pred eEEecCCccccccc-hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeE-EEEeeCCCCCCCCCCCCHHH
Q psy17235 2 QLWDTGGMERVASI-TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKI-FLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 2 ~iwDt~G~e~~~~~-~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pv-vlvgnK~Dl~~~~~~v~~~~ 77 (170)
-|.||+|.-....+ .....+.+|.++++.+. +..++..+...++.+.... .++++ .++.|+.+.. ...+.
T Consensus 120 ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p-~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~-----~~~~~ 193 (212)
T cd02117 120 VLYDVLGDVVCGGFAMPIREGKADEIYIVTSG-EFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD-----RETEL 193 (212)
T ss_pred EEEecCCCceecccccccccccCcEEEEEecc-cHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc-----cHHHH
Confidence 37888765422222 11123479999999875 4566655554444444432 24443 4889999842 33455
Q ss_pred HHHHHHhcCCCeEE
Q psy17235 78 MENFWSRRSSRRFK 91 (170)
Q Consensus 78 ~~~~a~~~~~~~~~ 91 (170)
.+++.+.++.+.+-
T Consensus 194 ~~~~~~~~~~~vl~ 207 (212)
T cd02117 194 IDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHcCCCEEE
Confidence 67788888876543
No 374
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=85.39 E-value=2.1 Score=31.25 Aligned_cols=64 Identities=14% Similarity=-0.010 Sum_probs=46.1
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCC-eEEEEeeCCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENA-KIFLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~-pvvlvgnK~Dl~~ 68 (170)
-|.|||+.-.. .....+..+|.+|++.+.+. .+...+..+++.+....... .+-+|.|+.+...
T Consensus 98 iiiD~~~~~~~--~~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 98 IIIDTPPGLSD--PVRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKKLKIIGVVINRVDPGN 162 (195)
T ss_dssp EEEEECSSSSH--HHHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCC
T ss_pred eeecccccccH--HHHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhccccceEEEEEeeeCCCc
Confidence 47899875432 25567789999999998664 66888888887777665333 4568899998653
No 375
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=83.69 E-value=11 Score=29.28 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=48.0
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh--CCCCeEE-EEeeCCCCCCCCCCCCHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF-LCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~--~~~~pvv-lvgnK~Dl~~~~~~v~~~~~ 78 (170)
-|.||+|.-.... ....+..||.+|++... +..++..+...+..+... ..++++. +|.|+.+. .+..
T Consensus 121 viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~--------~~~~ 190 (270)
T PRK13185 121 ILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG--------TDLI 190 (270)
T ss_pred EEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh--------HHHH
Confidence 4789977532222 12236679999998854 566777666655544432 2566654 78899762 2345
Q ss_pred HHHHHhcCCCeE
Q psy17235 79 ENFWSRRSSRRF 90 (170)
Q Consensus 79 ~~~a~~~~~~~~ 90 (170)
.++.+.++.+.+
T Consensus 191 ~~~~~~~g~~vl 202 (270)
T PRK13185 191 DKFNEAVGLKVL 202 (270)
T ss_pred HHHHHHcCCCEE
Confidence 667777776544
No 376
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=82.88 E-value=18 Score=27.46 Aligned_cols=59 Identities=34% Similarity=0.501 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q psy17235 102 VEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILK 160 (170)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 160 (170)
.++..-...+...|..+.+..+.++..|...+...|+..+...++.+....++.+....
T Consensus 173 ~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We 231 (236)
T PF09325_consen 173 EEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWE 231 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445667888899999999999999999999999999999999988887776543
No 377
>KOG0466|consensus
Probab=81.92 E-value=0.85 Score=37.06 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=57.0
Q ss_pred eEEecCCccccccchhhhccC---CcEEEEEEeCCC----hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-C
Q psy17235 2 QLWDTGGMERVASITSSYYKF---AEAAILVFSLDN----AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ-V 73 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~---ad~iilv~D~t~----~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~-v 73 (170)
.+.|+||++-... ..+.+ -|+.++....+. |++-+++... ++.+ ---++++-||.|+...... -
T Consensus 128 SfVDCPGHDiLMa---TMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav--eiM~---LkhiiilQNKiDli~e~~A~e 199 (466)
T KOG0466|consen 128 SFVDCPGHDILMA---TMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV--EIMK---LKHIIILQNKIDLIKESQALE 199 (466)
T ss_pred EeccCCchHHHHH---HHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH--HHhh---hceEEEEechhhhhhHHHHHH
Confidence 5789999976432 33444 367777765543 4555544221 2222 2357889999999752111 1
Q ss_pred CHHHHHHHHHhcCC--CeEEEcccCCcchhhhH
Q psy17235 74 TEADMENFWSRRSS--RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 74 ~~~~~~~~a~~~~~--~~~~e~Sa~~~~~v~~~ 104 (170)
..++++.|.+.-.. ...+.+||.-..|++.+
T Consensus 200 q~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v 232 (466)
T KOG0466|consen 200 QHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVV 232 (466)
T ss_pred HHHHHHHHHhccccCCCceeeehhhhccChHHH
Confidence 23456666655433 24778999999999865
No 378
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=81.81 E-value=18 Score=28.11 Aligned_cols=53 Identities=26% Similarity=0.426 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy17235 101 VVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAE 153 (170)
Q Consensus 101 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 153 (170)
|.++..-...+...|..+++..+.++..|...|+.+|+..+..-.+-+....+
T Consensus 168 v~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qk 220 (234)
T cd07664 168 IKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQ 220 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566789999999999999999999999999999766655554333
No 379
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=81.61 E-value=9.7 Score=29.13 Aligned_cols=61 Identities=16% Similarity=0.013 Sum_probs=40.9
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
-|+|+|+.-. ......+..+|.+|++...+ ..++..+...+..+.... ..++.++.|+.+.
T Consensus 115 viiD~p~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~-~~~~~iviN~~~~ 175 (261)
T TIGR01968 115 VIIDCPAGIE--SGFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG-IEKIHLIVNRLRP 175 (261)
T ss_pred EEEeCCCCcC--HHHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC-CCceEEEEeCcCc
Confidence 4789987643 22344567899999988754 567777766666655443 2356778899875
No 380
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=81.58 E-value=11 Score=29.91 Aligned_cols=88 Identities=9% Similarity=-0.078 Sum_probs=49.3
Q ss_pred eEEecCCccccccch-----h--hh-----ccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 2 QLWDTGGMERVASIT-----S--SY-----YKFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~-----~--~~-----~~~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
-|.||+|.-...... . .. -..+|.+++|.|.+.. +.+..+ ..+.+.. -+--+|.||.|...
T Consensus 158 ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~--~~~g~IlTKlDe~~ 231 (272)
T TIGR00064 158 VLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV--GLTGIILTKLDGTA 231 (272)
T ss_pred EEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC--CCCEEEEEccCCCC
Confidence 478999975432211 0 01 1248999999999753 233333 2222221 13457789999754
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhh
Q psy17235 69 TTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVE 103 (170)
Q Consensus 69 ~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~ 103 (170)
. .-.+..++...+.|..+.+ +|+++++
T Consensus 232 ---~--~G~~l~~~~~~~~Pi~~~~---~Gq~~~d 258 (272)
T TIGR00064 232 ---K--GGIILSIAYELKLPIKFIG---VGEKIDD 258 (272)
T ss_pred ---C--ccHHHHHHHHHCcCEEEEe---CCCChHh
Confidence 1 1234445556788766655 6766543
No 381
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=81.50 E-value=10 Score=33.19 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCe
Q psy17235 37 SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRR 89 (170)
Q Consensus 37 Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~ 89 (170)
-|.++.+.++.++++ ++|++|+.||.|... .-..+..+++|.+.|++.
T Consensus 357 Gl~NL~RHIenvr~F--GvPvVVAINKFd~DT---e~Ei~~I~~~c~e~Gv~v 404 (557)
T PRK13505 357 GFANLERHIENIRKF--GVPVVVAINKFVTDT---DAEIAALKELCEELGVEV 404 (557)
T ss_pred HHHHHHHHHHHHHHc--CCCEEEEEeCCCCCC---HHHHHHHHHHHHHcCCCE
Confidence 355666666666665 799999999999754 323456889999999864
No 382
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=79.89 E-value=20 Score=25.75 Aligned_cols=84 Identities=10% Similarity=-0.031 Sum_probs=51.8
Q ss_pred eEEecCCccccccchhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeE-EEEeeCCCCCCC----CCCC-
Q psy17235 2 QLWDTGGMERVASITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNKSDLEGT----TPQV- 73 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pv-vlvgnK~Dl~~~----~~~v- 73 (170)
-|.|||+.-. ......+ ..+|.+++|...+ +.++..+..++..+.+. +.|+ -+|.|+.+...+ ....
T Consensus 71 VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~--~~~~~gvv~N~~~~~~~~~~~~~~~~ 145 (169)
T cd02037 71 LVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV--NIPILGVVENMSYFVCPHCGKKIYIF 145 (169)
T ss_pred EEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhc--CCCeEEEEEcCCcccCCCCCCccccc
Confidence 4789987532 1111222 5789999998655 57777777787777765 3443 477899875311 1112
Q ss_pred CHHHHHHHHHhcCCCeE
Q psy17235 74 TEADMENFWSRRSSRRF 90 (170)
Q Consensus 74 ~~~~~~~~a~~~~~~~~ 90 (170)
.....+.+++.++.+..
T Consensus 146 ~~~~~~~~~~~~~~~~~ 162 (169)
T cd02037 146 GKGGGEKLAEELGVPLL 162 (169)
T ss_pred CCccHHHHHHHcCCCEE
Confidence 23456777877776654
No 383
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.56 E-value=30 Score=33.28 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=32.4
Q ss_pred cCCcEEEEEEeCCChhh----H-----HHHHHHHHHHHhhC-CCCeEEEEeeCCCCCC
Q psy17235 21 KFAEAAILVFSLDNAAS----F-----HVLSQHLLEIVTYA-ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~S----f-----~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~ 68 (170)
+..+|||+..|+.+.-+ . ..++.=+.++.... -.+||.|++||.|+..
T Consensus 213 ~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 213 RPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred CCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 45899999999875321 1 12233344555444 6899999999999854
No 384
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=79.55 E-value=7.9 Score=25.25 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=29.8
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLL 46 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~ 46 (170)
-|+|+|+... ......+..+|.++++.+. +..++..+..+++
T Consensus 43 viiD~p~~~~--~~~~~~l~~ad~viv~~~~-~~~s~~~~~~~~~ 84 (104)
T cd02042 43 IIIDTPPSLG--LLTRNALAAADLVLIPVQP-SPLDLDGLEKLLE 84 (104)
T ss_pred EEEeCcCCCC--HHHHHHHHHCCEEEEeccC-CHHHHHHHHHHHH
Confidence 4789988643 2233667789999999875 4677777777765
No 385
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=79.49 E-value=5 Score=27.20 Aligned_cols=58 Identities=9% Similarity=0.035 Sum_probs=40.9
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCC-CCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEE
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAE-NAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKP 92 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~-~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e 92 (170)
++| +++++.++..++..+..+.+.+++..+ ++++++.|+=... . .+.+++.|+..++.
T Consensus 50 ~pd--vV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~-~----------~~~~~~~G~D~~~~ 108 (119)
T cd02067 50 DAD--AIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTR-D----------FKFLKEIGVDAYFG 108 (119)
T ss_pred CCC--EEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCCh-h----------HHHHHHcCCeEEEC
Confidence 455 445566777888999999999988876 7888887764432 1 13677888877664
No 386
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=79.47 E-value=20 Score=29.26 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=43.6
Q ss_pred eEEecCCccc---cccchhhhccCCcEEEEEEeCCChhhHH---HHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCCC
Q psy17235 2 QLWDTGGMER---VASITSSYYKFAEAAILVFSLDNAASFH---VLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQVT 74 (170)
Q Consensus 2 ~iwDt~G~e~---~~~~~~~~~~~ad~iilv~D~t~~~Sf~---~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v~ 74 (170)
-|.|++|... |.. +....-+|.+|+| -..+..|+. ++.+.+..+.+...+.+ +-+|.||.|..+
T Consensus 151 VliD~~gdv~~ggf~l--~i~~~~ad~VIVV-t~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~------ 221 (329)
T cd02033 151 VLLDFLGDVVCGGFGL--PIARDMAQKVIVV-GSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTG------ 221 (329)
T ss_pred EEEecCCcceeccccc--hhhhcCCceEEEe-CCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcc------
Confidence 3678877542 211 1111125554444 344556664 34555555555433344 458899998533
Q ss_pred HHHHHHHHHhcCCCeEE
Q psy17235 75 EADMENFWSRRSSRRFK 91 (170)
Q Consensus 75 ~~~~~~~a~~~~~~~~~ 91 (170)
+++.+++.++.+..-
T Consensus 222 --~ie~~ae~lgi~vLg 236 (329)
T cd02033 222 --EAQAFAAHAGIPILA 236 (329)
T ss_pred --hHHHHHHHhCCCEEE
Confidence 477888888886543
No 387
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=78.36 E-value=9.6 Score=29.64 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=45.4
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh--CCCCeEE-EEeeCCCCCCCCCCCCHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF-LCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~--~~~~pvv-lvgnK~Dl~~~~~~v~~~~~ 78 (170)
-|.||+|.-....+ ...+..||.+|++... ++.++..+...+..+... ..+++++ +|.|+.+.. ...
T Consensus 119 vIIDt~g~~~~~~~-~~al~~aD~vlip~~p-~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~--------~~i 188 (267)
T cd02032 119 ILFDVLGDVVCGGF-AAPLNYADYALIVTDN-DFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDKT--------DLI 188 (267)
T ss_pred EEEeCCCCcccccc-hhhhhhcCEEEEEecC-CcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCHH--------HHH
Confidence 47899775322211 2236789999998765 445555555544443322 2456543 678998732 234
Q ss_pred HHHHHhcCCCeE
Q psy17235 79 ENFWSRRSSRRF 90 (170)
Q Consensus 79 ~~~a~~~~~~~~ 90 (170)
..+...++.+.+
T Consensus 189 ~~~~~~~~~~vl 200 (267)
T cd02032 189 DKFVEAVGMPVL 200 (267)
T ss_pred HHHHHhCCCCEE
Confidence 556666776543
No 388
>KOG3929|consensus
Probab=77.49 E-value=1.1 Score=35.64 Aligned_cols=36 Identities=19% Similarity=0.467 Sum_probs=21.6
Q ss_pred eEEecCCccccccch-----hhhccCCcEEEEEEeCCChhhH
Q psy17235 2 QLWDTGGMERVASIT-----SSYYKFAEAAILVFSLDNAASF 38 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~-----~~~~~~ad~iilv~D~t~~~Sf 38 (170)
.+|..+|......+. ..-++ .-.+|++.|+++++.|
T Consensus 95 N~WELGgg~~~~~LLsVPit~~~l~-~~slIL~LDls~p~~~ 135 (363)
T KOG3929|consen 95 NFWELGGGTSLLDLLSVPITGDTLR-TFSLILVLDLSKPNDL 135 (363)
T ss_pred HHHHhcCCccHHHHhcCcccccchh-hhhheeeeecCChHHH
Confidence 368888765433322 22222 3457999999998654
No 389
>KOG2485|consensus
Probab=77.17 E-value=12 Score=30.44 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=41.2
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHh
Q psy17235 17 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSR 84 (170)
Q Consensus 17 ~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~ 84 (170)
...++..|.||=|=|..-|-|-++ ..+.+ ..+..|-|||.||+||.+ . .....-++.++..
T Consensus 41 ~~~l~~~D~iiEvrDaRiPLssrn--~~~~~---~~~~k~riiVlNK~DLad-~-~~~k~~iq~~~~~ 101 (335)
T KOG2485|consen 41 QNRLPLVDCIIEVRDARIPLSSRN--ELFQD---FLPPKPRIIVLNKMDLAD-P-KEQKKIIQYLEWQ 101 (335)
T ss_pred HhhcccccEEEEeeccccCCcccc--HHHHH---hcCCCceEEEEecccccC-c-hhhhHHHHHHHhh
Confidence 344678999999999888766544 22222 235788999999999987 2 3444455555555
No 390
>CHL00175 minD septum-site determining protein; Validated
Probab=76.55 E-value=18 Score=28.27 Aligned_cols=62 Identities=13% Similarity=-0.063 Sum_probs=39.3
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE 67 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~ 67 (170)
-|+|||+.-. ......+..+|.+++|.+.+ +.|+..+...+..+..... ..+-+|.|+.+..
T Consensus 130 VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~~-~~~~lvvN~~~~~ 191 (281)
T CHL00175 130 ILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANGI-YNVKLLVNRVRPD 191 (281)
T ss_pred EEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcCC-CceEEEEeccChh
Confidence 4789987642 23334457799999987643 5677766666665555332 2345677998753
No 391
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=76.42 E-value=17 Score=26.07 Aligned_cols=78 Identities=9% Similarity=-0.024 Sum_probs=41.5
Q ss_pred eEEecCCcccc-----ccchhhh-ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH
Q psy17235 2 QLWDTGGMERV-----ASITSSY-YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE 75 (170)
Q Consensus 2 ~iwDt~G~e~~-----~~~~~~~-~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~ 75 (170)
-|.||+|.-.+ ..+.... ....+++++|.|.....+ ...+...+.+..+ ..-+|.||.|... ..
T Consensus 86 viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~--~~~viltk~D~~~-----~~ 155 (173)
T cd03115 86 VIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG--ITGVILTKLDGDA-----RG 155 (173)
T ss_pred EEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC--CCEEEEECCcCCC-----Cc
Confidence 47899997422 1121111 134899999999865432 2234444433322 2446679999754 12
Q ss_pred HHHHHHHHhcCCCe
Q psy17235 76 ADMENFWSRRSSRR 89 (170)
Q Consensus 76 ~~~~~~a~~~~~~~ 89 (170)
......+...+.|.
T Consensus 156 g~~~~~~~~~~~p~ 169 (173)
T cd03115 156 GAALSIRAVTGKPI 169 (173)
T ss_pred chhhhhHHHHCcCe
Confidence 22333555566653
No 392
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=76.26 E-value=11 Score=25.59 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=30.6
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCC
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKS 64 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~ 64 (170)
.++...+|+|.. ....+.....+..++....++|+++++++.
T Consensus 36 ~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 36 FTDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp TTTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred CCCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 455555555554 666666678889999888999999999866
No 393
>KOG0463|consensus
Probab=75.82 E-value=4.2 Score=34.13 Aligned_cols=65 Identities=14% Similarity=0.187 Sum_probs=36.3
Q ss_pred CeEEecCCccccccc--hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASI--TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~--~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.+.|.+|+|+|-.. ..+.-+-.|...++.-.+-- -..-.++.+..... -.+|+.+|.+|+|+..
T Consensus 221 iTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALa--L~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 221 ITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALA--LHVPVFVVVTKIDMCP 287 (641)
T ss_pred EEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhh--hcCcEEEEEEeeccCc
Confidence 468999999998542 22223345666666654321 00001122221111 3689999999999864
No 394
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=74.79 E-value=17 Score=26.94 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=38.1
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~ 68 (170)
-|.|+|..... .-.......+|++|+|.+.. ..+...+..-+..+... +.+ +-+|.||.|...
T Consensus 131 ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~-~~~~~~~~~~~~~l~~~--~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 131 IIIDTPPIGTV-TDAAIIARACDASILVTDAG-EIKKRDVQKAKEQLEQT--GSNFLGVVLNKVDISV 194 (204)
T ss_pred EEEeCCCcccc-chHHHHHHhCCeEEEEEECC-CCCHHHHHHHHHHHHhC--CCCEEEEEEeCccccc
Confidence 47888852111 11233456799999999864 45555555555555443 344 447889999654
No 395
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=74.78 E-value=32 Score=25.46 Aligned_cols=60 Identities=35% Similarity=0.530 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH
Q psy17235 104 AEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCL 163 (170)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 163 (170)
+..-...+...+..+......++..|...+...|+..+...++.+....+..+....++.
T Consensus 157 ~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~ 216 (218)
T cd07596 157 AESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLL 216 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 333445666788888899999999999999999999999999999999998888877654
No 396
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=72.98 E-value=34 Score=26.53 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=45.2
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh--CCCCeE-EEEeeCCCCCCCCCCCCHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKI-FLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~--~~~~pv-vlvgnK~Dl~~~~~~v~~~~~ 78 (170)
-|.||+|.-..... ...+.-||.+|++... +..++..+...+..+... ..++++ .+|.|+.+. + +..
T Consensus 119 ViID~~~~~~~~~~-~~~l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~----~----~~~ 188 (268)
T TIGR01281 119 ILFDVLGDVVCGGF-ATPLQYADYALVVAAN-DFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA----T----DLI 188 (268)
T ss_pred EEEecCCccccCcc-ccchhhcCEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh----H----HHH
Confidence 47888775321111 1236779999998654 455666655554444332 245654 467899874 2 234
Q ss_pred HHHHHhcCCCeE
Q psy17235 79 ENFWSRRSSRRF 90 (170)
Q Consensus 79 ~~~a~~~~~~~~ 90 (170)
..+.+.++.+.+
T Consensus 189 ~~~~~~~~~~vl 200 (268)
T TIGR01281 189 ERFNERVGMPVL 200 (268)
T ss_pred HHHHHHcCCCEE
Confidence 556666776644
No 397
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=72.64 E-value=14 Score=28.53 Aligned_cols=61 Identities=8% Similarity=0.020 Sum_probs=40.5
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh----hCCCCeEEEEeeCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT----YAENAKIFLCGNKSD 65 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~----~~~~~pvvlvgnK~D 65 (170)
-|.||||... ......+..+|.+|+.... ++.++..+..++..+.. ..+++|..++.|.++
T Consensus 87 iiID~pp~~~--~~~~~al~~aD~vliP~~p-s~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 87 ALADTHGGSS--ELNNTIIASSNLLLIPTML-TPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred EEEeCCCCcc--HHHHHHHHHCCEEEEeccC-cHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 4789999653 3445567789999888765 34555555555444332 236788889999987
No 398
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=72.60 E-value=8.6 Score=34.68 Aligned_cols=67 Identities=16% Similarity=0.122 Sum_probs=38.1
Q ss_pred CeEEecCCccccc-------cc---hhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CC--CeEEEEeeCCC
Q psy17235 1 MQLWDTGGMERVA-------SI---TSSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYA-EN--AKIFLCGNKSD 65 (170)
Q Consensus 1 l~iwDt~G~e~~~-------~~---~~~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~--~pvvlvgnK~D 65 (170)
+.|+||||-.... .+ ...++. ++|++|+|..++.......-..++..+.... +. --+|||.|..|
T Consensus 168 L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD 247 (763)
T TIGR00993 168 IRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAA 247 (763)
T ss_pred EEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCc
Confidence 4689999965321 11 122333 5899999998764433222234555555444 11 23677778888
Q ss_pred CC
Q psy17235 66 LE 67 (170)
Q Consensus 66 l~ 67 (170)
..
T Consensus 248 ~l 249 (763)
T TIGR00993 248 SA 249 (763)
T ss_pred cC
Confidence 64
No 399
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=72.33 E-value=28 Score=28.30 Aligned_cols=88 Identities=8% Similarity=-0.071 Sum_probs=49.1
Q ss_pred eEEecCCcccccc-----chhh-------hccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 2 QLWDTGGMERVAS-----ITSS-------YYKFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~~~~-----~~~~-------~~~~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
-|.||||.-.... +... .-...+..++|.|.+.. +.+..+..+. +.. -+--+|.||.|...
T Consensus 200 ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~----~~~--~~~giIlTKlD~t~ 273 (318)
T PRK10416 200 LIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH----EAV--GLTGIILTKLDGTA 273 (318)
T ss_pred EEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH----hhC--CCCEEEEECCCCCC
Confidence 4789999643211 1111 11357788999998853 2333332222 111 23457789999543
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhh
Q psy17235 69 TTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVE 103 (170)
Q Consensus 69 ~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~ 103 (170)
. .-.+..++...+.|..+.+ +|+++++
T Consensus 274 ---~--~G~~l~~~~~~~~Pi~~v~---~Gq~~~D 300 (318)
T PRK10416 274 ---K--GGVVFAIADELGIPIKFIG---VGEGIDD 300 (318)
T ss_pred ---C--ccHHHHHHHHHCCCEEEEe---CCCChhh
Confidence 1 1234455667788876655 6777754
No 400
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=72.16 E-value=16 Score=23.90 Aligned_cols=16 Identities=0% Similarity=-0.209 Sum_probs=8.4
Q ss_pred HHHHHHHHhcCCCeEE
Q psy17235 76 ADMENFWSRRSSRRFK 91 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~~ 91 (170)
..+.+.|+..+.|.++
T Consensus 65 ~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 65 WKVKKAAKKYGIPIIY 80 (97)
T ss_pred HHHHHHHHHcCCcEEE
Confidence 3455555555655443
No 401
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=71.60 E-value=44 Score=25.72 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=45.5
Q ss_pred eEEecCCccccccc-hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEE-EEeeCCCCCCCCCCCCHHH
Q psy17235 2 QLWDTGGMERVASI-TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF-LCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 2 ~iwDt~G~e~~~~~-~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvv-lvgnK~Dl~~~~~~v~~~~ 77 (170)
-|.||+|.-....+ ......-+|.+|++... ++.++..+...+..+.... .+.++. ++.|+.. .....+.
T Consensus 120 viID~~g~~~~~~~~~~~~~~aaD~vlip~~p-~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~-----~~~~~~~ 193 (270)
T cd02040 120 VIYDVLGDVVCGGFAMPIREGKAQEIYIVTSG-EMMALYAANNICKGILKYAKSGGVRLGGLICNSRN-----TDREDEL 193 (270)
T ss_pred EEEecccCcccCCcccccccccccEEEEEecC-chHHHHHHHHHHHHHHHhCccCCCceEEEEEecCC-----ChhHHHH
Confidence 47899875432222 12223359999999875 4567766665555544433 345554 4445432 1222344
Q ss_pred HHHHHHhcCCCeE
Q psy17235 78 MENFWSRRSSRRF 90 (170)
Q Consensus 78 ~~~~a~~~~~~~~ 90 (170)
...+.+.++.+.+
T Consensus 194 ~~~l~~~~g~~vl 206 (270)
T cd02040 194 IDAFAKRLGTQMI 206 (270)
T ss_pred HHHHHHHcCCCeE
Confidence 5567777776543
No 402
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=71.06 E-value=65 Score=27.47 Aligned_cols=88 Identities=10% Similarity=0.001 Sum_probs=48.1
Q ss_pred eEEecCCcccccc-----chh-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeE-EEEeeCCCCCCCCCCCC
Q psy17235 2 QLWDTGGMERVAS-----ITS-SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNKSDLEGTTPQVT 74 (170)
Q Consensus 2 ~iwDt~G~e~~~~-----~~~-~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pv-vlvgnK~Dl~~~~~~v~ 74 (170)
-|.||+|.-.... +.. .....+|.+++|.|.+... ..-.....+. ..+++ -+|.||.|... .
T Consensus 179 VIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~---~~l~i~gvIlTKlD~~a---~-- 247 (437)
T PRK00771 179 IIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFH---EAVGIGGIIITKLDGTA---K-- 247 (437)
T ss_pred EEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHH---hcCCCCEEEEecccCCC---c--
Confidence 4899999754321 111 1134688999999987642 1112222222 22333 46779999643 1
Q ss_pred HHHHHHHHHhcCCCeEEEcccCCcchhhh
Q psy17235 75 EADMENFWSRRSSRRFKPQEVVEPQEVVE 103 (170)
Q Consensus 75 ~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~ 103 (170)
-=-+..++...+.|..+.+ +|++|++
T Consensus 248 ~G~~ls~~~~~~~Pi~fig---~Ge~v~D 273 (437)
T PRK00771 248 GGGALSAVAETGAPIKFIG---TGEKIDD 273 (437)
T ss_pred ccHHHHHHHHHCcCEEEEe---cCCCccc
Confidence 1234456666787765544 3555543
No 403
>PRK10818 cell division inhibitor MinD; Provisional
Probab=70.16 E-value=20 Score=27.76 Aligned_cols=83 Identities=14% Similarity=0.027 Sum_probs=48.8
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-----C--CCCeEEEEeeCCCCCCCCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-----A--ENAKIFLCGNKSDLEGTTPQVT 74 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~-----~--~~~pvvlvgnK~Dl~~~~~~v~ 74 (170)
-|.|+|+.-.. .....+..+|.++++.+.+ ..++..+...+..+... . .+++..++.|..|... ...-.
T Consensus 117 viiD~p~~~~~--~~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~-~~~~~ 192 (270)
T PRK10818 117 IVCDSPAGIET--GALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGR-VSRGD 192 (270)
T ss_pred EEEeCCCCccH--HHHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHhh-hhhcc
Confidence 47899876533 2333468899999997755 56777776666665422 1 2344567889888532 00001
Q ss_pred HHHHHHHHHhcCCC
Q psy17235 75 EADMENFWSRRSSR 88 (170)
Q Consensus 75 ~~~~~~~a~~~~~~ 88 (170)
.....++.+.++.+
T Consensus 193 ~~~~~~~~~~~g~~ 206 (270)
T PRK10818 193 MLSMEDVLEILRIK 206 (270)
T ss_pred cccHHHHHHHhCCc
Confidence 11245566666765
No 404
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=69.73 E-value=16 Score=29.09 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=26.5
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
..|+++++.+.+... +..+ -+..+.+....+++|-|..|+|.-.
T Consensus 113 RVH~cLYfI~pt~~~-L~~~--Di~~mk~Ls~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 113 RVHACLYFIPPTGHG-LKPL--DIEFMKRLSKRVNVIPVIAKADTLT 156 (281)
T ss_dssp -EEEEEEEE-TTSSS-S-HH--HHHHHHHHTTTSEEEEEESTGGGS-
T ss_pred CcceEEEEEcCCCcc-chHH--HHHHHHHhcccccEEeEEecccccC
Confidence 479999999987532 1111 1233344445688999999999743
No 405
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=69.44 E-value=61 Score=26.44 Aligned_cols=75 Identities=12% Similarity=0.157 Sum_probs=41.3
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH---HHHH-----HHhcCCCeEEE
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD---MENF-----WSRRSSRRFKP 92 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~---~~~~-----a~~~~~~~~~e 92 (170)
.-+|.+++|-=..--+..+.++.= +. .+-=|+|.||.|..+. .....+ +..+ ......|..+.
T Consensus 163 ~~aDt~~~v~~pg~GD~~Q~iK~G---im----EiaDi~vINKaD~~~A--~~a~r~l~~al~~~~~~~~~~~W~ppv~~ 233 (323)
T COG1703 163 NMADTFLVVMIPGAGDDLQGIKAG---IM----EIADIIVINKADRKGA--EKAARELRSALDLLREVWRENGWRPPVVT 233 (323)
T ss_pred hhcceEEEEecCCCCcHHHHHHhh---hh----hhhheeeEeccChhhH--HHHHHHHHHHHHhhcccccccCCCCceeE
Confidence 457888877644433444443322 22 2334678899997652 111111 1111 11112367889
Q ss_pred cccCCcchhhhH
Q psy17235 93 QEVVEPQEVVEA 104 (170)
Q Consensus 93 ~Sa~~~~~v~~~ 104 (170)
+||..|+|+++.
T Consensus 234 t~A~~g~Gi~~L 245 (323)
T COG1703 234 TSALEGEGIDEL 245 (323)
T ss_pred eeeccCCCHHHH
Confidence 999999999976
No 406
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=68.17 E-value=5.4 Score=27.22 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=20.1
Q ss_pred EeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccC
Q psy17235 60 CGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVV 96 (170)
Q Consensus 60 vgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~ 96 (170)
++||+|++. +.+-..++...+....++.|||.
T Consensus 1 AaNK~D~~~-----a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA-----ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S------HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc-----cHhHHHHHHHhCCCCceeeccHH
Confidence 589999743 55667777777766678888874
No 407
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=65.75 E-value=66 Score=25.69 Aligned_cols=81 Identities=19% Similarity=0.080 Sum_probs=44.2
Q ss_pred eEEecCCcccc-ccchhhhccCCcEEEEEEeCCChhhHHHH---HHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCCCHH
Q psy17235 2 QLWDTGGMERV-ASITSSYYKFAEAAILVFSLDNAASFHVL---SQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQVTEA 76 (170)
Q Consensus 2 ~iwDt~G~e~~-~~~~~~~~~~ad~iilv~D~t~~~Sf~~~---~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v~~~ 76 (170)
-|.|++|.-.- ....+.....||.++++.+. +..++..+ ...+..+.....+++ +-+|.|+.+..+
T Consensus 126 IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~-e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~-------- 196 (296)
T TIGR02016 126 VLMDFLGDVVCGGFATPLARSLAEEVIVIGSN-DRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSG-------- 196 (296)
T ss_pred EEEecCCCccccccccchhhhhCCeEEEEecc-hHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCcc--------
Confidence 36787664210 01112223468888888654 34555444 344444444323344 458889987422
Q ss_pred HHHHHHHhcCCCeEE
Q psy17235 77 DMENFWSRRSSRRFK 91 (170)
Q Consensus 77 ~~~~~a~~~~~~~~~ 91 (170)
.++++++.++.+..-
T Consensus 197 ~~~~~~~~~~i~vLg 211 (296)
T TIGR02016 197 EAQAFAREVGIPVLA 211 (296)
T ss_pred HHHHHHHHcCCCeEE
Confidence 456778888876544
No 408
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=64.55 E-value=42 Score=22.85 Aligned_cols=60 Identities=5% Similarity=-0.049 Sum_probs=40.3
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEc
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQ 93 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~ 93 (170)
.++|++.+.+ ++..+...++.++..+.+.. +++++++.|+... ++ .+...+.|+..|+-.
T Consensus 49 ~~~d~V~iS~--~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~----------~~-~~~~~~~G~d~~~~~ 109 (122)
T cd02071 49 EDVDVIGLSS--LSGGHMTLFPEVIELLRELGAGDILVVGGGIIPP----------ED-YELLKEMGVAEIFGP 109 (122)
T ss_pred cCCCEEEEcc--cchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCH----------HH-HHHHHHCCCCEEECC
Confidence 3567666554 56778888889999888875 5777777776432 22 234456888777754
No 409
>PRK14974 cell division protein FtsY; Provisional
Probab=63.61 E-value=49 Score=27.13 Aligned_cols=89 Identities=10% Similarity=-0.106 Sum_probs=49.1
Q ss_pred eEEecCCcccccc-----chhhh-ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC
Q psy17235 2 QLWDTGGMERVAS-----ITSSY-YKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT 74 (170)
Q Consensus 2 ~iwDt~G~e~~~~-----~~~~~-~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~ 74 (170)
-|.||+|.-.... +.... .-+.|.+++|.|.+..+ ..+.+..+.. .. + +--++.||.|... ...
T Consensus 226 VLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~----~~-~-~~giIlTKlD~~~---~~G 296 (336)
T PRK14974 226 VLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNE----AV-G-IDGVILTKVDADA---KGG 296 (336)
T ss_pred EEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHh----cC-C-CCEEEEeeecCCC---Ccc
Confidence 4789999753211 21111 22578899999987643 2322322221 11 2 2346789999754 222
Q ss_pred HHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 75 EADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 75 ~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
-+..++...+.|..+.+ +|+++++.
T Consensus 297 --~~ls~~~~~~~Pi~~i~---~Gq~v~Dl 321 (336)
T PRK14974 297 --AALSIAYVIGKPILFLG---VGQGYDDL 321 (336)
T ss_pred --HHHHHHHHHCcCEEEEe---CCCChhhc
Confidence 23345555688766654 78888543
No 410
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=63.49 E-value=5.7 Score=31.60 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=21.8
Q ss_pred CeEEecCCccc----cccchhhh---ccCCcEEEEEEeCC
Q psy17235 1 MQLWDTGGMER----VASITSSY---YKFAEAAILVFSLD 33 (170)
Q Consensus 1 l~iwDt~G~e~----~~~~~~~~---~~~ad~iilv~D~t 33 (170)
++++|+||-.. -..+...+ ++.+|+++.|+|..
T Consensus 64 i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 64 IEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred EEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 47899999432 11222223 56899999999864
No 411
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=63.14 E-value=32 Score=26.05 Aligned_cols=61 Identities=11% Similarity=-0.008 Sum_probs=37.6
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLE 67 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~ 67 (170)
-|+|||+.-.. .....+..+|.++++.+.+ ..|+..+......... .+.+ +.++.|+.+..
T Consensus 112 VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~-~~s~~~~~~~~~~~~~--~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 112 LLIDAPAGLER--DAVTALAAADELLLVVNPE-ISSITDALKTKIVAEK--LGTAILGVVLNRVTRD 173 (251)
T ss_pred EEEeCCCccCH--HHHHHHHhCCeEEEEECCC-CchHHHHHHHHHHHHh--cCCceEEEEEECCCch
Confidence 47899976432 3334466899999998865 4555554433332222 2344 45889999853
No 412
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=62.47 E-value=30 Score=24.26 Aligned_cols=59 Identities=7% Similarity=-0.036 Sum_probs=38.0
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEc
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQ 93 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~ 93 (170)
++|++. .+..+..+.+.++..++.+.+.. +++++++-|+..+ ++. ...++.|+..|+..
T Consensus 53 ~adii~--iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~----------~~~-~~l~~~Gvd~~~~~ 112 (132)
T TIGR00640 53 DVHVVG--VSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPP----------QDF-DELKEMGVAEIFGP 112 (132)
T ss_pred CCCEEE--EcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCCh----------HhH-HHHHHCCCCEEECC
Confidence 556544 45566677778888888887765 4677777666653 122 23556888877743
No 413
>PRK11670 antiporter inner membrane protein; Provisional
Probab=61.90 E-value=88 Score=25.92 Aligned_cols=86 Identities=8% Similarity=0.015 Sum_probs=45.9
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEE-EEeeCCCCCCC----CCC-CCH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNKSDLEGT----TPQ-VTE 75 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvv-lvgnK~Dl~~~----~~~-v~~ 75 (170)
-|.|||..-....+.-..+-.+|++++|..... .++..+..-+..+.+ .++|++ +|.|+.+.... ... ...
T Consensus 219 vIID~PPg~gd~~l~~~~l~aad~viiV~tp~~-~s~~da~~~i~~~~~--~~~~ilGiV~Nm~~~~~~~~~~~~~if~~ 295 (369)
T PRK11670 219 LVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQD-IALIDAKKGIVMFEK--VEVPVLGIVENMSMHICSNCGHHEPIFGT 295 (369)
T ss_pred EEEeCCCCCchHHHHHhhhccCCeEEEEecCch-hHHHHHHHHHHHHhc--cCCCeEEEEEcCCccccCCccchhhhccc
Confidence 367887542211122223345899988876543 334444344333332 467765 78899875420 111 122
Q ss_pred HHHHHHHHhcCCCeE
Q psy17235 76 ADMENFWSRRSSRRF 90 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~ 90 (170)
..+..+++.++.+.+
T Consensus 296 ~~~~~lae~~~~~ll 310 (369)
T PRK11670 296 GGAEKLAEKYHTQLL 310 (369)
T ss_pred chHHHHHHHcCCcEE
Confidence 246778888887644
No 414
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=60.24 E-value=20 Score=25.13 Aligned_cols=40 Identities=5% Similarity=0.135 Sum_probs=31.3
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEE
Q psy17235 20 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFL 59 (170)
Q Consensus 20 ~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvl 59 (170)
-..-||.|+..-++...+=..+..|++.+.+.+ .++||++
T Consensus 81 heq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 81 HEQEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred eEeccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 345688888888887777777889999998876 5778765
No 415
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=58.53 E-value=23 Score=25.16 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=20.0
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLD 33 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t 33 (170)
-|.||+|... .....+..||-+++|....
T Consensus 95 iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe 123 (148)
T cd03114 95 IIVETVGVGQ---SEVDIASMADTTVVVMAPG 123 (148)
T ss_pred EEEECCccCh---hhhhHHHhCCEEEEEECCC
Confidence 4789988542 2234788899888887654
No 416
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=57.70 E-value=55 Score=26.04 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=36.1
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh--CCCCeEE-EEeeCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF-LCGNKSDL 66 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~--~~~~pvv-lvgnK~Dl 66 (170)
-|.||+|.-....+. ..+..||.+|++.+. ++.|+..+...++.+... .+++++. ++.|+.+.
T Consensus 119 IiIDt~~~l~~~a~~-aal~~AD~viIp~~p-~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 119 ILFDVLGDVVCGGFA-APLNYADYCIIITDN-GFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred EEEecCCcceechhh-hhhhcCCEEEEEecC-CHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 378887752211111 235679999998764 456666665544433322 2345443 78899873
No 417
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=57.24 E-value=1.2e+02 Score=25.77 Aligned_cols=89 Identities=9% Similarity=-0.047 Sum_probs=48.9
Q ss_pred eEEecCCcccccc-chh---h--hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH
Q psy17235 2 QLWDTGGMERVAS-ITS---S--YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE 75 (170)
Q Consensus 2 ~iwDt~G~e~~~~-~~~---~--~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~ 75 (170)
-|.||+|.-.... +.. . ..-..+.+++|.|.+.. +.+..+...+.... ++ .=+|.||.|-.. ..
T Consensus 186 VIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v-~i-~giIlTKlD~~~-----~~ 255 (428)
T TIGR00959 186 VIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL-GL-TGVVLTKLDGDA-----RG 255 (428)
T ss_pred EEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC-CC-CEEEEeCccCcc-----cc
Confidence 4789999643221 111 0 12357889999998753 23333334443222 11 235689999533 11
Q ss_pred HHHHHHHHhcCCCeEEEcccCCcchhhh
Q psy17235 76 ADMENFWSRRSSRRFKPQEVVEPQEVVE 103 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~ 103 (170)
-.+..++...+.|..+.+. |+++++
T Consensus 256 G~~lsi~~~~~~PI~fi~~---Ge~i~d 280 (428)
T TIGR00959 256 GAALSVRSVTGKPIKFIGV---GEKIDD 280 (428)
T ss_pred cHHHHHHHHHCcCEEEEeC---CCChhh
Confidence 2366777788888665543 455543
No 418
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=57.22 E-value=90 Score=24.26 Aligned_cols=46 Identities=17% Similarity=0.380 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy17235 108 QQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAE 153 (170)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 153 (170)
...+...|..+++..+.++..|...|+..|+..+..-.+-.....+
T Consensus 175 ~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ie~qk 220 (234)
T cd07665 175 VTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQ 220 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445578899999999999999999999999888655554444333
No 419
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=56.56 E-value=25 Score=25.18 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=30.4
Q ss_pred EEecCCccccccchhh--------hccCCcEEEEEEeCCChhhHH-HHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 3 LWDTGGMERVASITSS--------YYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 3 iwDt~G~e~~~~~~~~--------~~~~ad~iilv~D~t~~~Sf~-~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
+.||+|-..-..+... ..-..|+++.+.|..+-.... .-..+..++.. .- +||.||+|+
T Consensus 91 ~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----ad-~ivlnk~dl 158 (158)
T cd03112 91 VIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF----AD-RILLNKTDL 158 (158)
T ss_pred EEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH----CC-EEEEecccC
Confidence 6788886421111111 233588999999965432211 11223333322 22 457899996
No 420
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=55.83 E-value=37 Score=24.55 Aligned_cols=42 Identities=12% Similarity=0.185 Sum_probs=29.8
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCC
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDL 66 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl 66 (170)
...|.+|+.| |.+=..+..++..+.... ++.+++|||-|..-
T Consensus 68 ~~~D~vvly~----PKaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~G 110 (155)
T PF08468_consen 68 QDFDTVVLYW----PKAKAEAQYLLANLLSHLPPGTEIFVVGENKGG 110 (155)
T ss_dssp TT-SEEEEE------SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGGT
T ss_pred cCCCEEEEEc----cCcHHHHHHHHHHHHHhCCCCCEEEEEecCccc
Confidence 4689999998 667667777888877766 68999999987764
No 421
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=55.16 E-value=1e+02 Score=24.63 Aligned_cols=78 Identities=6% Similarity=-0.042 Sum_probs=48.1
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF 81 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~ 81 (170)
-|.|+|+... ......+..+|.+++|.+. +..++..+..+++.+....+++ -+|.|.... ..++.+ ++
T Consensus 208 VIID~p~~~~--~~~~~~L~~AD~vliV~~~-~~~sl~~a~r~l~~l~~~~~~~--~lVv~~~~~----~~~~~~---~i 275 (322)
T TIGR03815 208 VVVDLPRRLT--PAAETALESADLVLVVVPA-DVRAVAAAARVCPELGRRNPDL--RLVVRGPAP----AGLDPE---EI 275 (322)
T ss_pred EEEeCCCCCC--HHHHHHHHHCCEEEEEcCC-cHHHHHHHHHHHHHHhhhCCCe--EEEEeCCCC----CCCCHH---HH
Confidence 5789997643 3345668899999999864 4567777777777776554433 334464321 233433 34
Q ss_pred HHhcCCCeEE
Q psy17235 82 WSRRSSRRFK 91 (170)
Q Consensus 82 a~~~~~~~~~ 91 (170)
.+.++.+.+.
T Consensus 276 ~~~lg~~v~~ 285 (322)
T TIGR03815 276 AESLGLPLLG 285 (322)
T ss_pred HHHhCCCcee
Confidence 5556765554
No 422
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=54.41 E-value=37 Score=26.52 Aligned_cols=44 Identities=9% Similarity=0.022 Sum_probs=33.2
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCC
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKS 64 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~ 64 (170)
..+|.++..|+..+...=+.+.+-++-+.++. ++.|+.+|-|=-
T Consensus 153 A~adfVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnag 197 (249)
T COG1010 153 AEADFVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAG 197 (249)
T ss_pred hhCCEEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 46899999999887765556666666667776 789998876644
No 423
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=53.61 E-value=82 Score=22.68 Aligned_cols=44 Identities=27% Similarity=0.236 Sum_probs=30.0
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Q psy17235 119 SDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKC 162 (170)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 162 (170)
...++.........+...-.++++.....++...++++++|++|
T Consensus 40 f~~t~~~~r~~~~~r~~~~~~~~v~~~~~~i~~k~~El~~L~~~ 83 (146)
T PF05852_consen 40 FQFTKKSLRSHNSLREECEIKNKVSSLETEISEKKKELSHLKKF 83 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33343333333344444445688889999999999999999985
No 424
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=53.14 E-value=1.1e+02 Score=23.92 Aligned_cols=83 Identities=10% Similarity=0.033 Sum_probs=43.4
Q ss_pred eEEecCCccccccc-hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCC-CHHH
Q psy17235 2 QLWDTGGMERVASI-TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQV-TEAD 77 (170)
Q Consensus 2 ~iwDt~G~e~~~~~-~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v-~~~~ 77 (170)
-|.||+|.-....+ ....+.-||.+|++... ++.|+..+...+..+.... .+.++..|.+. ... .. ..+.
T Consensus 120 viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p-~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n--~r~---~~~~~~~ 193 (279)
T PRK13230 120 VIYDILGDVVCGGFAMPLQKGLADDVYIVTTC-DPMAIYAANNICKGIKRFAKRGKSALGGIIYN--GRS---VIDAPDI 193 (279)
T ss_pred EEEecCCccccCCccccccccccceEEEeccc-hHHHHHHHHHHHHHHHHHhhcCCCcceEEEEe--ccC---CCchhHH
Confidence 47899764322121 12223458999998876 5677777665544443322 34444433332 211 22 2344
Q ss_pred HHHHHHhcCCCeE
Q psy17235 78 MENFWSRRSSRRF 90 (170)
Q Consensus 78 ~~~~a~~~~~~~~ 90 (170)
...+++.++.+.+
T Consensus 194 ~e~l~~~~g~~vl 206 (279)
T PRK13230 194 VEEFAKKIGTNVI 206 (279)
T ss_pred HHHHHHHhCCcEE
Confidence 6677777776543
No 425
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=53.04 E-value=55 Score=25.44 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=34.8
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEE-EEeeC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNK 63 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvv-lvgnK 63 (170)
-|.|||-.... .-.......+|++|+|... +..+...+...+..+... +.+++ +|.|+
T Consensus 216 ViiD~pp~~~~-~d~~~~~~~~d~vilV~~~-~~t~~~~~~~~~~~l~~~--~~~~~G~VlN~ 274 (274)
T TIGR03029 216 VIVDTPSAEHS-SDAQIVATRARGTLIVSRV-NETRLHELTSLKEHLSGV--GVRVVGAVLNQ 274 (274)
T ss_pred EEEeCCCcccc-cHHHHHHHhCCeEEEEEEC-CCCCHHHHHHHHHHHHhC--CCCEEEEEeCC
Confidence 47888754321 2234456678999998864 346667777776666654 34443 45553
No 426
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=52.73 E-value=41 Score=22.37 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=28.0
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCC
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKS 64 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~ 64 (170)
+.|.+. ++.....++.......+.+++..+++++++.|.-.
T Consensus 51 ~pd~V~--iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 51 RPDVVG--ISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp TCSEEE--EEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred CCcEEE--EEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCch
Confidence 567644 45545566666777777777777889988877543
No 427
>KOG0410|consensus
Probab=51.45 E-value=16 Score=30.21 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=45.8
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCe----EEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcc
Q psy17235 20 YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAK----IFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQE 94 (170)
Q Consensus 20 ~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~p----vvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~S 94 (170)
...+|.++=|.|+++|.-=......+.-+.+.. ++.| ++=|-||.|...+ .++ +| .++ -...|
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~--~~e-~E------~n~---~v~is 322 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED--EVE-EE------KNL---DVGIS 322 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc--cCc-cc------cCC---ccccc
Confidence 457999999999999976555544544444443 4444 4456788887541 111 11 122 23469
Q ss_pred cCCcchhhhH
Q psy17235 95 VVEPQEVVEA 104 (170)
Q Consensus 95 a~~~~~v~~~ 104 (170)
|++|.|.++.
T Consensus 323 altgdgl~el 332 (410)
T KOG0410|consen 323 ALTGDGLEEL 332 (410)
T ss_pred cccCccHHHH
Confidence 9999998864
No 428
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=51.42 E-value=1.1e+02 Score=23.67 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=42.7
Q ss_pred eEEecCCccccccc-hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEE-EEeeCCCCCCCCCCCCHHH
Q psy17235 2 QLWDTGGMERVASI-TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF-LCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 2 ~iwDt~G~e~~~~~-~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvv-lvgnK~Dl~~~~~~v~~~~ 77 (170)
-|.||+|.-....+ .+..+.-+|.+|++... ++.++..+..+++.+.... .+.++. ++.|+.. .....+.
T Consensus 119 iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p-~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~~-----~~~~~~~ 192 (275)
T TIGR01287 119 VFYDVLGDVVCGGFAMPIREGKAQEIYIVTSG-EMMALYAANNICKGILKYAKSGGVRLGGLICNSRN-----VDDEKEL 192 (275)
T ss_pred EEEeccCcceecceeeccccccccEEEEEecc-hHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCCC-----CchHHHH
Confidence 47899775432221 22223468999988854 4667777666655443322 355544 4445421 1222333
Q ss_pred HHHHHHhcCCC
Q psy17235 78 MENFWSRRSSR 88 (170)
Q Consensus 78 ~~~~a~~~~~~ 88 (170)
.+.+.+.++.+
T Consensus 193 ~e~l~~~~~~~ 203 (275)
T TIGR01287 193 IDEFAKKLGTQ 203 (275)
T ss_pred HHHHHHHhCCc
Confidence 45666666654
No 429
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=51.42 E-value=29 Score=25.10 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=30.7
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCC
Q psy17235 23 AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKS 64 (170)
Q Consensus 23 ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~ 64 (170)
-++.|.--.+..|.|++.=.+|+.+.-...+..-+|++|||-
T Consensus 84 y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgnKn 125 (180)
T COG4502 84 YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGNKN 125 (180)
T ss_pred heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecCCC
Confidence 456666666668999999889987754443455689999985
No 430
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=50.32 E-value=54 Score=25.50 Aligned_cols=62 Identities=5% Similarity=-0.030 Sum_probs=41.2
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH--HHHHHHHHhhC-CCCeEEEEeeCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL--SQHLLEIVTYA-ENAKIFLCGNKSD 65 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~--~~~~~~i~~~~-~~~pvvlvgnK~D 65 (170)
-|.||.|... .+....+..+|.+|+=.-.+-.+.-+.+ -.|+.++.+.. +++|.-|+.|++.
T Consensus 87 VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~ 151 (231)
T PF07015_consen 87 VLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVP 151 (231)
T ss_pred EEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCC
Confidence 4789988643 2345567789999987766643333322 25665554433 7899999999986
No 431
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=49.97 E-value=34 Score=21.91 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=32.9
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEE
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKP 92 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e 92 (170)
..|.+++=++..+...+ .+++.++...+++|+|++++..|. .....+.+.|+..|+.
T Consensus 43 ~~d~iiid~~~~~~~~~----~~~~~i~~~~~~~~ii~~t~~~~~----------~~~~~~~~~g~~~~l~ 99 (112)
T PF00072_consen 43 PPDLIIIDLELPDGDGL----ELLEQIRQINPSIPIIVVTDEDDS----------DEVQEALRAGADDYLS 99 (112)
T ss_dssp TESEEEEESSSSSSBHH----HHHHHHHHHTTTSEEEEEESSTSH----------HHHHHHHHTTESEEEE
T ss_pred CceEEEEEeeecccccc----ccccccccccccccEEEecCCCCH----------HHHHHHHHCCCCEEEE
Confidence 35666655555554444 334445555578999998876662 2223333677776764
No 432
>KOG2486|consensus
Probab=49.96 E-value=17 Score=29.25 Aligned_cols=97 Identities=13% Similarity=-0.078 Sum_probs=51.6
Q ss_pred eEEecCC----------ccccccchhhhccCCc---EEEEEEeCCCh-hhH-HHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 2 QLWDTGG----------MERVASITSSYYKFAE---AAILVFSLDNA-ASF-HVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 2 ~iwDt~G----------~e~~~~~~~~~~~~ad---~iilv~D~t~~-~Sf-~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
.+.|.|| .+.+..+...|+-+-+ -+.+..|.+.+ +-- .-.-.|+.+ .++|+.+|.||||.
T Consensus 186 ~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge-----~~VP~t~vfTK~DK 260 (320)
T KOG2486|consen 186 YEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE-----NNVPMTSVFTKCDK 260 (320)
T ss_pred EEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh-----cCCCeEEeeehhhh
Confidence 4678888 2335556666765432 34444454432 111 122355544 58999999999997
Q ss_pred CCC-----CCCCCHH-----HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 67 EGT-----TPQVTEA-----DMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 67 ~~~-----~~~v~~~-----~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+ .++...- ...+.+.... +.++-+|+.++.|+++.
T Consensus 261 ~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~-~Pw~~~Ssvt~~Grd~L 307 (320)
T KOG2486|consen 261 QKKVKRTGKKPGLNIKINFQGLIRGVFLVD-LPWIYVSSVTSLGRDLL 307 (320)
T ss_pred hhhccccccCccccceeehhhccccceecc-CCceeeecccccCceee
Confidence 542 1111111 1111111112 23556899999998875
No 433
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=49.33 E-value=62 Score=23.18 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=30.9
Q ss_pred CCcEEEEEEeCCChhh----HHHHHHHHHHHHhhCCCCeEEEEeeCC
Q psy17235 22 FAEAAILVFSLDNAAS----FHVLSQHLLEIVTYAENAKIFLCGNKS 64 (170)
Q Consensus 22 ~ad~iilv~D~t~~~S----f~~~~~~~~~i~~~~~~~pvvlvgnK~ 64 (170)
.+|.+++.+-.+|-.+ .+++...+..++...++.|+++++-..
T Consensus 57 ~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~p~~~iil~~~~~ 103 (177)
T cd01844 57 PADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETHPDTPILLVSPRY 103 (177)
T ss_pred CCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHCcCCCEEEEecCC
Confidence 6798999888877532 345556677777766888998887544
No 434
>KOG1534|consensus
Probab=49.08 E-value=24 Score=27.39 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=33.5
Q ss_pred eEEecCCcccccc-------chhhhcc--CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCC
Q psy17235 2 QLWDTGGMERVAS-------ITSSYYK--FAEAAILVFSLDNA-ASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~~~~-------~~~~~~~--~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~ 68 (170)
-|+|+|||-+... +..+.-+ ---+++++.|..=- ++..-+.-.+..+.... -.+|-|-|.+|.||..
T Consensus 101 lifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 101 LIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred EEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 4799999965322 2222111 12344555553211 22222222222222222 3789999999999865
No 435
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=48.90 E-value=1.1e+02 Score=22.58 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=51.7
Q ss_pred ccCCcEEEEEEeCCC----h---hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEE
Q psy17235 20 YKFAEAAILVFSLDN----A---ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKP 92 (170)
Q Consensus 20 ~~~ad~iilv~D~t~----~---~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e 92 (170)
++....=.+++|..| + +--..+..|+.++++..+.--++||-|-.-..+ .....+++.+.+.+|++.+.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~---d~~~~~a~~~~~~lgIpvl~- 111 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSD---DPDGERAEALEKALGIPVLR- 111 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCccc---CccHHHHHHHHHhhCCcEEE-
Confidence 344444455666654 1 223567789999887754335888888874432 45568899999999998554
Q ss_pred cccCCcchhhhH
Q psy17235 93 QEVVEPQEVVEA 104 (170)
Q Consensus 93 ~Sa~~~~~v~~~ 104 (170)
-+++.+-...++
T Consensus 112 h~~kKP~~~~~i 123 (168)
T PF09419_consen 112 HRAKKPGCFREI 123 (168)
T ss_pred eCCCCCccHHHH
Confidence 456666444433
No 436
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=48.31 E-value=1.3e+02 Score=23.83 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=41.0
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS 83 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~ 83 (170)
.++|+++++--..-+.|-+.+..++..+....++.|+++ -|--... ...++.+...++++
T Consensus 95 ~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~i-Yn~P~~t--g~~l~~~~~~~L~~ 154 (288)
T cd00954 95 LGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMII-YHIPALT--GVNLTLEQFLELFE 154 (288)
T ss_pred cCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEE-EeCcccc--CCCCCHHHHHHHhc
Confidence 479999887544444455677788888877655789877 4544432 35677888888875
No 437
>KOG0448|consensus
Probab=47.51 E-value=2.2e+02 Score=25.96 Aligned_cols=64 Identities=23% Similarity=0.350 Sum_probs=42.5
Q ss_pred eEEecCCcc---ccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 2 QLWDTGGME---RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e---~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
.+.|.||-. ...+.....+.++|++|+|...-+.-+... ..++..+.+. ..-+.++-||-|...
T Consensus 209 vliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~--KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 209 VLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE--KPNIFILNNKWDASA 275 (749)
T ss_pred eeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc--CCcEEEEechhhhhc
Confidence 478889853 456667788899999999986655444322 3444444433 445667778889865
No 438
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=46.74 E-value=47 Score=24.80 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=39.6
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCC--CCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEE
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKP 92 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~--~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e 92 (170)
++| ++.++.+...++..+..+++.+++..+ ++|+++.|.=. +. .++...|...|..
T Consensus 133 ~~d--~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~---------~~----~~~~~~GaD~~~~ 190 (201)
T cd02070 133 KPD--ILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPV---------NQ----EFADEIGADGYAE 190 (201)
T ss_pred CCC--EEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcC---------CH----HHHHHcCCcEEEC
Confidence 455 455566666778888999999988765 78888876532 22 2788889887753
No 439
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=46.73 E-value=1.4e+02 Score=23.25 Aligned_cols=62 Identities=18% Similarity=0.112 Sum_probs=35.7
Q ss_pred eEEecCCcccccc-chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh--CCCCeEE-EEeeCC
Q psy17235 2 QLWDTGGMERVAS-ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF-LCGNKS 64 (170)
Q Consensus 2 ~iwDt~G~e~~~~-~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~--~~~~pvv-lvgnK~ 64 (170)
-|.||+|.-.... .....+.-||.+|++.. .++.|+..+...++.+... .++.++. ++.|+.
T Consensus 121 ilID~~~~~~~~~l~~~~a~~aad~vlIp~~-~e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~ 186 (274)
T PRK13235 121 VFYDVLGDVVCGGFAMPIRDGKAEEIYIVCS-GEMMAMYAANNICKGILKYADAGGVRLGGLICNSR 186 (274)
T ss_pred EEEECCCCCccCCcccccccccccEEEEEec-CchhHHHHHHHHHHHHHHHhhcCCCceeEEEEecC
Confidence 3788876422111 11222236888998884 4677888776665554433 3566553 566864
No 440
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=46.58 E-value=1.4e+02 Score=23.23 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=45.7
Q ss_pred eEEecCCccccc-cchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEE-EEeeCCCCCCCCCCCCHHHH
Q psy17235 2 QLWDTGGMERVA-SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIF-LCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 2 ~iwDt~G~e~~~-~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvv-lvgnK~Dl~~~~~~v~~~~~ 78 (170)
-|.||+|.-... ...+..+..||.++++.. .++.|+..+...++.+.... ++.++. +|.|+.+.. ...+-.
T Consensus 120 vlID~~~~~~~~~~~~~~al~aad~vlip~~-p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~-----~~~~~~ 193 (273)
T PRK13232 120 VFYDVLGDVVCGGFAMPIREGKAKEIYIVAS-GELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVD-----GERELL 193 (273)
T ss_pred EEEecCCCeeECCEeccccccccceEEEecC-chHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCC-----ccHHHH
Confidence 368887653211 111222347898888886 45677777666666655432 556654 677876421 123334
Q ss_pred HHHHHhcCCC
Q psy17235 79 ENFWSRRSSR 88 (170)
Q Consensus 79 ~~~a~~~~~~ 88 (170)
..+.+.++..
T Consensus 194 e~l~~~~~~~ 203 (273)
T PRK13232 194 EAFAKKLGSQ 203 (273)
T ss_pred HHHHHHhCCC
Confidence 5556666653
No 441
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=45.26 E-value=67 Score=21.55 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 40 VLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 40 ~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
....++..+.+..+.+|++++|.+-..
T Consensus 55 ~~~~~l~~l~~~~~~~Pvlllg~~~~~ 81 (109)
T PF06490_consen 55 KLAELLKELLKWAPHIPVLLLGEHDSP 81 (109)
T ss_pred hHHHHHHHHHhhCCCCCEEEECCCCcc
Confidence 444566666777789999999988765
No 442
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=44.58 E-value=1.2e+02 Score=23.43 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=44.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhhh
Q psy17235 100 EVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAEL 166 (170)
Q Consensus 100 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 166 (170)
.|..++..+..+|..|.....++..-+.. ...|-+.+..-|..|.=.-+..+..+..||+.+
T Consensus 19 ~i~~vEkhFg~lC~~~a~ytRKtArLRDk-----~D~lak~l~~yA~~E~~~l~~~L~~fae~la~v 80 (219)
T PF06730_consen 19 RITNVEKHFGELCQLFAAYTRKTARLRDK-----GDELAKQLQDYANTENPNLKLGLKNFAECLAKV 80 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchh-----hHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHH
Confidence 35566778888999998888877653322 345667777777777666666888888888876
No 443
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.13 E-value=2.2e+02 Score=25.30 Aligned_cols=87 Identities=16% Similarity=0.063 Sum_probs=46.6
Q ss_pred eEEecCCccccccc-h----hh-hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH
Q psy17235 2 QLWDTGGMERVASI-T----SS-YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE 75 (170)
Q Consensus 2 ~iwDt~G~e~~~~~-~----~~-~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~ 75 (170)
-|.||+|....... . .. ... ....++|.+.+. ++..+...+..+.. ..+.-+|.||.|... +.
T Consensus 432 VLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~---~~~~gvILTKlDEt~-----~l 500 (559)
T PRK12727 432 VLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAH---AKPQGVVLTKLDETG-----RF 500 (559)
T ss_pred EEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHh---hCCeEEEEecCcCcc-----ch
Confidence 47999996432211 0 00 011 234566777653 34444444444332 235668899999743 23
Q ss_pred HHHHHHHHhcCCCeEEEcccCCcchhh
Q psy17235 76 ADMENFWSRRSSRRFKPQEVVEPQEVV 102 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~ 102 (170)
-.+..+....+.+..+.+ +|++|.
T Consensus 501 G~aLsv~~~~~LPI~yvt---~GQ~VP 524 (559)
T PRK12727 501 GSALSVVVDHQMPITWVT---DGQRVP 524 (559)
T ss_pred hHHHHHHHHhCCCEEEEe---CCCCch
Confidence 455666777788755444 456554
No 444
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=44.06 E-value=92 Score=23.40 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=38.3
Q ss_pred eEEecCCccc-cccchhhhccC--CcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 2 QLWDTGGMER-VASITSSYYKF--AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~-~~~~~~~~~~~--ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
-|+|||.... ...+....+.. +|++++|...+ ..+...+...+..+.....+ +.-+|.|+.....
T Consensus 117 IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~-~~s~~~~~~~l~~l~~~~~~-~~glVlN~~~~~~ 184 (217)
T cd02035 117 IVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE-KLPLYETERAITELALYGIP-VDAVVVNRVLPAE 184 (217)
T ss_pred EEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC-ccHHHHHHHHHHHHHHCCCC-CCEEEEeCCcCcc
Confidence 4789975322 12222333443 47888887755 56777777777776665422 2346779887543
No 445
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=43.83 E-value=47 Score=24.72 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=29.5
Q ss_pred cCCccccccchhhhccCCcEEEEEEeC--C-ChhhHH-HHHHHHHHHHhhCCCCeEEEEe
Q psy17235 6 TGGMERVASITSSYYKFAEAAILVFSL--D-NAASFH-VLSQHLLEIVTYAENAKIFLCG 61 (170)
Q Consensus 6 t~G~e~~~~~~~~~~~~ad~iilv~D~--t-~~~Sf~-~~~~~~~~i~~~~~~~pvvlvg 61 (170)
.+|.-........++...|+=+++.|+ + +++.|. .+..++..++...|++|+++|-
T Consensus 41 fsG~~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 41 FSGNGKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp -TCCCS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred ecCccccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 355555555445555544444444443 2 344554 4567778888777999999875
No 446
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=43.68 E-value=69 Score=26.14 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=36.9
Q ss_pred CCcEEEEEEeCCChhhHHH-HHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCC-eEEEccc
Q psy17235 22 FAEAAILVFSLDNAASFHV-LSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSR-RFKPQEV 95 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~-~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~-~~~e~Sa 95 (170)
.-|+++.|+|..+-..-.. +.....+-.. .-=+||.||.|+.+ .. ..+..+...+..+.. .++.+|.
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia----~AD~ivlNK~Dlv~-~~--~l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLA----FADVIVLNKTDLVD-AE--ELEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHH----hCcEEEEecccCCC-HH--HHHHHHHHHHHhCCCCeEEEccc
Confidence 3688999999876443222 2222222111 22367889999987 22 244455666666542 3444444
No 447
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=42.99 E-value=1.7e+02 Score=26.06 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeE
Q psy17235 38 FHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRF 90 (170)
Q Consensus 38 f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~ 90 (170)
|.++...++.+.++ ++|+||..|+..-.. .-..+..++++.+.|+...
T Consensus 387 ~~NL~~Hi~n~~~f--g~pvVVaiN~F~~Dt---~~Ei~~l~~~~~~~g~~~~ 434 (587)
T PRK13507 387 CANLLHHIGTVKKS--GINPVVCINAFYTDT---HAEIAIVRRLAEQAGARVA 434 (587)
T ss_pred HHHHHHHHHHHHHc--CCCeEEEeCCCCCCC---HHHHHHHHHHHHHcCCCEE
Confidence 34455566666665 799999999987533 2233457788888888543
No 448
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=42.55 E-value=79 Score=23.50 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=26.5
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIV 49 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~ 49 (170)
-|+|+|..-... ........+|++|+|.... ..+...+.+.+..+.
T Consensus 152 IiiD~pp~~~~~-~~~~l~~~aD~viiV~~~~-~~~~~~~~~~~~~l~ 197 (207)
T TIGR03018 152 IIIDTPPLLVFS-EARALARLVGQIVLVVEEG-RTTQEAVKEALSALE 197 (207)
T ss_pred EEEECCCCcchh-HHHHHHHhCCEEEEEEECC-CCCHHHHHHHHHHhc
Confidence 467887554321 2233455688888888754 344555555555544
No 449
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=42.55 E-value=70 Score=25.91 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=32.0
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCC
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~ 68 (170)
.++|++++.+. .+-...+.++..+.... ++..++++|.|.|...
T Consensus 36 ~~~d~~l~~~p----K~~~e~e~qLa~ll~~~~~g~~i~v~g~~~~g~~ 80 (300)
T COG2813 36 DDFDAVLLYWP----KHKAEAEFQLAQLLARLPPGGEIVVVGEKRDGVR 80 (300)
T ss_pred CCCCEEEEEcc----CchHHHHHHHHHHHhhCCCCCeEEEEecccchHH
Confidence 36899888884 44455556666666555 7999999999999643
No 450
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=41.78 E-value=50 Score=27.45 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=22.1
Q ss_pred CeEEecCCcccc----ccchhh---hccCCcEEEEEEeCC
Q psy17235 1 MQLWDTGGMERV----ASITSS---YYKFAEAAILVFSLD 33 (170)
Q Consensus 1 l~iwDt~G~e~~----~~~~~~---~~~~ad~iilv~D~t 33 (170)
+++.|+||-..- ..+... .++.+|++++|+|..
T Consensus 68 i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 68 IEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred EEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 468999995321 122222 357899999999984
No 451
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=40.82 E-value=1.7e+02 Score=22.66 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=34.8
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhh--CCCCeEE-EEeeCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF-LCGNKSDLEGTTPQVTEADMENFWSRRSSR 88 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~--~~~~pvv-lvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~ 88 (170)
-||.+|++... ++.|+..+...++.+... .++++++ +|.|+... ....+-.+++.+.++..
T Consensus 143 aad~viIp~~p-~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~-----~~~~~~~e~l~~~~~~~ 206 (275)
T PRK13233 143 KAQEVYIVASG-EMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNV-----DGELELLEEFTDAIGTQ 206 (275)
T ss_pred cCceEEEeccc-cHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCC-----CcHHHHHHHHHHHcCCc
Confidence 58888888865 467777776665544322 2566654 77886421 11223344555555543
No 452
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=40.16 E-value=72 Score=25.67 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=33.9
Q ss_pred hhccCCcEEEEEEeCCCh-----hhH-----HHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 18 SYYKFAEAAILVFSLDNA-----ASF-----HVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~-----~Sf-----~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
..++++|.++++...... ..+ ..++...+.+.+..++..+|+++|-+|.
T Consensus 68 ~~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~ 126 (309)
T cd05294 68 SDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDV 126 (309)
T ss_pred HHhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHH
Confidence 348899999999886332 222 3344555666666688888899998885
No 453
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=39.67 E-value=1.9e+02 Score=25.40 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeE
Q psy17235 38 FHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRF 90 (170)
Q Consensus 38 f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~ 90 (170)
+.++...++.++++ ++|+||..|+..-.. .-..+..++++.+.|+...
T Consensus 342 ~~NL~~Hi~n~~~f--g~p~VVaiN~F~~Dt---~~Ei~~v~~~~~~~g~~~~ 389 (524)
T cd00477 342 FANLRKHIENIKKF--GVPVVVAINKFSTDT---DAELALVRKLAEEAGAFVA 389 (524)
T ss_pred HHHHHHHHHHHHHc--CCCeEEEecCCCCCC---HHHHHHHHHHHHHcCCCEE
Confidence 34555666666665 799999999997533 3333457788999898543
No 454
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.48 E-value=89 Score=28.37 Aligned_cols=64 Identities=14% Similarity=0.044 Sum_probs=42.3
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
-|+|||+.-.... .......+|++|+|... +..+...+...++.+..... ...-+|.|+.|...
T Consensus 659 IiID~pp~~~~~d-~~~l~~~~D~vl~v~~~-~~~~~~~~~~~~~~l~~~~~-~~~GvvlN~~~~~~ 722 (754)
T TIGR01005 659 VVVDVGTADPVRD-MRAAARLAIIMLLVTAY-DRVVVECGRADAQGISRLNG-EVTGVFLNMLDPND 722 (754)
T ss_pred EEEcCCCcchhHH-HHHhhhhCCeEEEEEEe-CceeHHHHHHHHHHHHhcCC-ceEEEEecCCChhh
Confidence 4789987643212 22334569999999764 56777777777777775432 22348899999654
No 455
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=39.42 E-value=1.3e+02 Score=21.05 Aligned_cols=66 Identities=12% Similarity=0.005 Sum_probs=42.8
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcc
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQE 94 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~S 94 (170)
++|++. .+.....+...++.++..+.... +++++++.|+=.= ..-...+.....+++|+..++..+
T Consensus 54 ~~d~V~--lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~-----~~~~~~~~~~~l~~~G~~~vf~~~ 120 (137)
T PRK02261 54 DADAIL--VSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVV-----GKHDFEEVEKKFKEMGFDRVFPPG 120 (137)
T ss_pred CCCEEE--EcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCC-----CccChHHHHHHHHHcCCCEEECcC
Confidence 456544 45555677888889998888775 5777777664321 122345666677788987776543
No 456
>PRK13660 hypothetical protein; Provisional
Probab=39.12 E-value=1.6e+02 Score=22.01 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=11.2
Q ss_pred ccCCcEEEEEEeCCCh
Q psy17235 20 YKFAEAAILVFSLDNA 35 (170)
Q Consensus 20 ~~~ad~iilv~D~t~~ 35 (170)
+.++|++|++||-..+
T Consensus 127 v~~sd~~i~~YD~e~~ 142 (182)
T PRK13660 127 LEHTDGALLVYDEENE 142 (182)
T ss_pred HHccCeEEEEEcCCCC
Confidence 4567888888876654
No 457
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=38.92 E-value=78 Score=22.55 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=22.2
Q ss_pred cCCcEEEEEEeCCChhh--------HHHHHHHHHHHHhhCCCCeEEEEe
Q psy17235 21 KFAEAAILVFSLDNAAS--------FHVLSQHLLEIVTYAENAKIFLCG 61 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~S--------f~~~~~~~~~i~~~~~~~pvvlvg 61 (170)
..+|.+++.+-++|... .+.+...+..++ .++.++++++
T Consensus 66 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~--~~~~~vil~~ 112 (185)
T cd01832 66 LRPDLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLR--AAGARVVVFT 112 (185)
T ss_pred cCCCEEEEeccccccccCCCCHHHHHHHHHHHHHHHH--hCCCEEEEec
Confidence 36777777776665533 344445555554 2456666654
No 458
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=38.79 E-value=1.4e+02 Score=24.98 Aligned_cols=63 Identities=14% Similarity=0.055 Sum_probs=37.7
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHH-------HHHhhCCC--CeEE-EEeeCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLL-------EIVTYAEN--AKIF-LCGNKSDLE 67 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~-------~i~~~~~~--~pvv-lvgnK~Dl~ 67 (170)
-|.|||+.-.+ +....+.-+|.+|+.+.. +..++..+...+. .+....++ ..++ ++.|+.|..
T Consensus 255 IiIDtpP~l~~--~t~~al~aAd~viiPv~p-~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~ 327 (405)
T PRK13869 255 VVIDCPPQLGF--LTLSGLCAATSMVITVHP-QMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQ 327 (405)
T ss_pred EEEECCCchhH--HHHHHHHHcCEEEEecCC-cHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCC
Confidence 47899887543 344456678999998754 4455555544433 33332223 2333 788999853
No 459
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=38.09 E-value=2.6e+02 Score=23.92 Aligned_cols=88 Identities=9% Similarity=-0.090 Sum_probs=45.8
Q ss_pred eEEecCCcccccc-----chhh-hccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC
Q psy17235 2 QLWDTGGMERVAS-----ITSS-YYKFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT 74 (170)
Q Consensus 2 ~iwDt~G~e~~~~-----~~~~-~~~~ad~iilv~D~t~~~S-f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~ 74 (170)
-|.||+|.-.... +... .....+-++||.|.+-.+. .+.+ ..+.+. -.+--+|.||.|... ..
T Consensus 186 ViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a----~~F~~~--~~~~g~IlTKlD~~a-rg--- 255 (429)
T TIGR01425 186 IIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA----KAFKDS--VDVGSVIITKLDGHA-KG--- 255 (429)
T ss_pred EEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH----HHHHhc--cCCcEEEEECccCCC-Cc---
Confidence 4789999643321 1111 1235788999999865432 2222 222222 124557789999743 11
Q ss_pred HHHHHHHHHhcCCCeEEEcccCCcchhhh
Q psy17235 75 EADMENFWSRRSSRRFKPQEVVEPQEVVE 103 (170)
Q Consensus 75 ~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~ 103 (170)
--+...+...+.|..+.+ +|+++++
T Consensus 256 -G~aLs~~~~t~~PI~fig---~Ge~v~D 280 (429)
T TIGR01425 256 -GGALSAVAATKSPIIFIG---TGEHIDD 280 (429)
T ss_pred -cHHhhhHHHHCCCeEEEc---CCCChhh
Confidence 112334555677654443 3555544
No 460
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=37.76 E-value=37 Score=29.82 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcc--cCCcchhhh
Q psy17235 38 FHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQE--VVEPQEVVE 103 (170)
Q Consensus 38 f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~S--a~~~~~v~~ 103 (170)
|.++...++.++.+ ++|+||..|+.--.. .-..+...++|++.|+. +..|. ++-|+|-.+
T Consensus 357 ~~NL~rHIeNik~f--GvpvVVAIN~F~tDT---~aEi~~I~~~~~~~Gv~-~avs~~wa~GGeGa~e 418 (557)
T PF01268_consen 357 FANLERHIENIKKF--GVPVVVAINRFPTDT---DAEIELIRELCEELGVR-AAVSEHWAKGGEGAVE 418 (557)
T ss_dssp HHHHHHHHHHHHCT--T--EEEEEE--TTS----HHHHHHHHHHCCCCCEE-EEEC-HHHHGGGGCHH
T ss_pred HHHHHHHHHHHHhc--CCCeEEEecCCCCCC---HHHHHHHHHHHHhCCCC-EEEechhhcccccHHH
Confidence 55556666666665 799999999986533 22234566788888876 44443 334444443
No 461
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=36.79 E-value=1.7e+02 Score=24.43 Aligned_cols=62 Identities=10% Similarity=-0.078 Sum_probs=35.3
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHH---HHhh----CCCCeEEEEeeCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLE---IVTY----AENAKIFLCGNKSDL 66 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~---i~~~----~~~~pvvlvgnK~Dl 66 (170)
-|.|||..-. .+....+.-||.+|+.... +..++..+...+.. +... ..+..+-++.|+.|.
T Consensus 238 IiIDtpP~l~--~~t~nal~AaD~viiP~~~-~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~ 306 (388)
T PRK13705 238 IVIDSAPNLG--IGTINVVCAADVLIVPTPA-ELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSN 306 (388)
T ss_pred EEEECCCchh--HHHHHHHHHcCEEEEecCC-cHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecC
Confidence 4789987643 3344456678999998754 45566555444333 3221 112223467898884
No 462
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=36.75 E-value=78 Score=24.07 Aligned_cols=59 Identities=10% Similarity=-0.001 Sum_probs=38.7
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH--HHHhcCCCeEE
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN--FWSRRSSRRFK 91 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~--~a~~~~~~~~~ 91 (170)
++| +++.+.....+...++.++..+.+...++|+++.|.= ++++-+.. +++..|...|.
T Consensus 139 ~~~--~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~~---------~~~~~~~~~~~~~~~gad~y~ 199 (213)
T cd02069 139 KAD--IIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGAA---------TSRKHTAVKIAPEYDGPVVYV 199 (213)
T ss_pred CCC--EEEEccchhccHHHHHHHHHHHHhcCCCCeEEEEChh---------cCHHHHhhhhccccCCCceEe
Confidence 445 4455667778888899999999877778888887643 33333332 24456777664
No 463
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=36.69 E-value=1.1e+02 Score=25.71 Aligned_cols=41 Identities=10% Similarity=0.055 Sum_probs=27.9
Q ss_pred cCCcEEEEEEeCCChhhHH----HHHHHHHHHHhhCCCCeEEEEee
Q psy17235 21 KFAEAAILVFSLDNAASFH----VLSQHLLEIVTYAENAKIFLCGN 62 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~----~~~~~~~~i~~~~~~~pvvlvgn 62 (170)
-++|.+.+-...+||.-.+ ....-.+.+... .++|++|.|+
T Consensus 152 ~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~a-v~vPLIL~gs 196 (389)
T TIGR00381 152 FGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQA-VDVPIVIGGS 196 (389)
T ss_pred hCCCEEEEEecCCCccccccCHHHHHHHHHHHHHh-CCCCEEEeCC
Confidence 4799999999999998222 222333444333 5899999977
No 464
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=36.13 E-value=83 Score=23.48 Aligned_cols=55 Identities=9% Similarity=0.025 Sum_probs=38.4
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEE
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFK 91 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~ 91 (170)
++| +++.+++...+...+..+++.+++.. +++++++.|.=. ++ .+++..|...|.
T Consensus 135 ~pd--~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~---------~~----~~~~~~gad~~~ 191 (197)
T TIGR02370 135 KPL--MLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPV---------TQ----DWADKIGADVYG 191 (197)
T ss_pred CCC--EEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhc---------CH----HHHHHhCCcEEe
Confidence 445 45566677777888889999998874 467877766433 22 478888887664
No 465
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=35.07 E-value=1.2e+02 Score=21.80 Aligned_cols=69 Identities=23% Similarity=0.343 Sum_probs=42.3
Q ss_pred EEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHH
Q psy17235 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFW 82 (170)
Q Consensus 3 iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a 82 (170)
|.|.+| .+..+.+. .++..-+++ ++.++..-|.....++..++.+.|+-.+||- || .+++.+...+-
T Consensus 42 l~~~~~--~~v~l~~~-~~n~~~vvf-VSa~S~~h~~~~~~~i~si~~~~P~~k~ilY----~L-----gL~~~~i~~L~ 108 (142)
T PF07801_consen 42 LLDNPG--PFVDLSSS-SKNSSDVVF-VSATSDNHFNESMKSISSIRKFYPNHKIILY----DL-----GLSEEQIKKLK 108 (142)
T ss_pred hccCCC--cceecccc-cccCCccEE-EEEecchHHHHHHHHHHHHHHHCCCCcEEEE----eC-----CCCHHHHHHHH
Confidence 345555 33444333 233334443 3445667788888899999999899888884 43 34556666665
Q ss_pred Hh
Q psy17235 83 SR 84 (170)
Q Consensus 83 ~~ 84 (170)
+.
T Consensus 109 ~~ 110 (142)
T PF07801_consen 109 KN 110 (142)
T ss_pred hc
Confidence 53
No 466
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=34.72 E-value=87 Score=24.90 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=34.0
Q ss_pred hccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 19 YYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~----------~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
.+++||.+|+...... +..+.......+++.+++++.-+|++.|-+|.
T Consensus 63 ~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di 120 (300)
T cd01339 63 DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDV 120 (300)
T ss_pred HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHH
Confidence 4788999998875432 23444455677777787777777888998875
No 467
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=34.09 E-value=43 Score=20.78 Aligned_cols=24 Identities=4% Similarity=0.142 Sum_probs=17.0
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHH
Q psy17235 25 AAILVFSLDNAASFHVLSQHLLEI 48 (170)
Q Consensus 25 ~iilv~D~t~~~Sf~~~~~~~~~i 48 (170)
-++++||++++.....+.+.+...
T Consensus 3 ~~lv~YDi~~~k~~~kv~k~L~~~ 26 (78)
T PF09827_consen 3 LYLVAYDISDNKRRNKVRKILKSY 26 (78)
T ss_dssp EEEEEEEEHSHHHHHHHHHHHHHT
T ss_pred EEEEEEECCCcHHHHHHHHHHHHh
Confidence 478999998887666665555443
No 468
>TIGR03488 cas_Cas5p CRISPR-associated protein, Cas5p family. CC Members of this protein family are cas, or CRISPR-associated, proteins. The two sequences in the alignment seed are found within cas gene clusters that are adjacent to CRISPR DNA repeats in two members of the order Bacteroidales, Porphyromonas gingivalis W83 and Bacteroides forsythus ATCC 43037. This cas protein family is unique to the Pgingi (Porphyromonas gingivalis) subtype, but shows some sequence similarity to genes of the Cas5 type (see TIGR02593).
Probab=34.01 E-value=41 Score=24.95 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=45.4
Q ss_pred ecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHh
Q psy17235 5 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSR 84 (170)
Q Consensus 5 Dt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~ 84 (170)
|+...--|..+|...|+.+|+-.+-|.-|.--.+..+.. .--+++-|+.|..+ ...+...+.+.|.++
T Consensus 109 ~~~~~~ffndlwkr~frr~dag~ih~~gtenidy~~i~d-----------k~k~mcener~~e~-~dk~d~~~le~f~ke 176 (237)
T TIGR03488 109 DFDEPCFFNDLWKRAFRRADAGKIHFGGTENIDYRLIMD-----------KFKFMCENERDEEN-EDKIDNHALEKFFKE 176 (237)
T ss_pred ccCCcchHhHHHHHHHhhccCceecCCCcccceeeehhh-----------hhhhhcccccchhh-hhhhhhHHHHHHHHh
Confidence 333333466788888888887666665554333322211 11245678888877 667777777777776
Q ss_pred c-C-CCeEEEc
Q psy17235 85 R-S-SRRFKPQ 93 (170)
Q Consensus 85 ~-~-~~~~~e~ 93 (170)
. . ++.|+.+
T Consensus 177 nid~~~~fyat 187 (237)
T TIGR03488 177 NIDFFPFFYAT 187 (237)
T ss_pred cccceeeeeec
Confidence 5 2 3445443
No 469
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=33.79 E-value=2.2e+02 Score=21.88 Aligned_cols=80 Identities=16% Similarity=0.076 Sum_probs=44.8
Q ss_pred eEEecCCccccccc-hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 2 QLWDTGGMERVASI-TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 2 ~iwDt~G~e~~~~~-~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
-|.||+|.-....+ .......+|.+|++... ++.|+..+..++..+........ .++-|..+.. ...+...+
T Consensus 117 ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p-~~~si~~~~~~~~~i~~~~~~~~-~vv~~~~~~~-----~~~~~~~~ 189 (264)
T PRK13231 117 VIYDVLGDVVCGGFSVPLREDYADEVYIVTSG-EYMSLYAANNIARGIKKLKGKLG-GIICNCRGID-----NEVEIVSE 189 (264)
T ss_pred EEEecCCCceEccccccccccccceeEEEecC-chhHHHHHHHHHHHHHHcCCcce-EEEEcCCCCc-----cHHHHHHH
Confidence 47888775322221 11112578999999764 56788888777776665433332 2444554421 12344556
Q ss_pred HHHhcCCC
Q psy17235 81 FWSRRSSR 88 (170)
Q Consensus 81 ~a~~~~~~ 88 (170)
+.+.++.+
T Consensus 190 l~~~~~~~ 197 (264)
T PRK13231 190 FASRIGSR 197 (264)
T ss_pred HHHHhCCC
Confidence 66666654
No 470
>PHA02277 hypothetical protein
Probab=33.78 E-value=91 Score=21.85 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHhhC-CCCeEEEEeeCC----CCCCCCCCCCHHHHHHHHHhcCC
Q psy17235 37 SFHVLSQHLLEIVTYA-ENAKIFLCGNKS----DLEGTTPQVTEADMENFWSRRSS 87 (170)
Q Consensus 37 Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~----Dl~~~~~~v~~~~~~~~a~~~~~ 87 (170)
|-.++..|++.+.... .+-. ||-|. +..+ .|.||.+++..+++.+..
T Consensus 13 S~~Dm~~W~e~V~tg~v~gK~---v~ek~~KqL~Ri~-~RsVSledaT~Ia~~L~~ 64 (150)
T PHA02277 13 SQADMEKWIEAVVQGTVDGKQ---VDEKTAKQLDRIG-SRSVSLEEATRIAKVLNA 64 (150)
T ss_pred cHHHHHHHHHHHHhCcccccc---cchhhHHHHHHHh-cccccHHHHHHHHHHHHH
Confidence 5566778988876543 1111 11111 1123 688999999888887754
No 471
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=33.45 E-value=59 Score=23.52 Aligned_cols=46 Identities=4% Similarity=-0.037 Sum_probs=26.9
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh-hCCCCeEEEEeeC
Q psy17235 18 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFLCGNK 63 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~-~~~~~pvvlvgnK 63 (170)
.-+..||++|++.-.-+-.---.+++|+..+.. ...+.|++++++-
T Consensus 64 ~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 64 QAIESADLLVVGSPVYRGSYTGLFKHLFDLVDPNALIGKPVLLAATG 110 (174)
T ss_pred HHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCHhHhCCCEEEEEEec
Confidence 346689999998655443222233445544322 1257888888774
No 472
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=33.44 E-value=73 Score=21.53 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=21.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF 38 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf 38 (170)
|++||..||=.-..-....-+.+-.++++++- ++.+-
T Consensus 38 lTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~~-~~~~~ 74 (104)
T PF12098_consen 38 LTVLDAYGQWRDRATGRLIRERSKVVIIVHPD-TPAAE 74 (104)
T ss_pred ceEEeccceEecCCCCcEeecccEEEEEEeCC-ChHHH
Confidence 57899999844323333334456777777753 34443
No 473
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=33.19 E-value=2.4e+02 Score=22.14 Aligned_cols=71 Identities=14% Similarity=0.062 Sum_probs=46.3
Q ss_pred cchhhhccCCcEEEEEEeCCChhhHHHHHHHHHH--------------HHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 14 SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLE--------------IVTYAENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 14 ~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~--------------i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
.+...+.-+||++++.+.+-++..+..+...-.. +.....--+-++..|-.|+.. -.++.....
T Consensus 116 QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t--~~vd~~~~~ 193 (247)
T PRK13957 116 QIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDT--FQIHQNLVE 193 (247)
T ss_pred HHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCcc--ceECHHHHH
Confidence 3556667799999999999887766554332221 111111123467789999975 577888888
Q ss_pred HHHHhcC
Q psy17235 80 NFWSRRS 86 (170)
Q Consensus 80 ~~a~~~~ 86 (170)
+++....
T Consensus 194 ~L~~~ip 200 (247)
T PRK13957 194 EVAAFLP 200 (247)
T ss_pred HHHhhCC
Confidence 8877663
No 474
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=32.87 E-value=89 Score=25.09 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=34.3
Q ss_pred ccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 20 YKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 20 ~~~ad~iilv~D~t~~----------~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
+.++|.+++....-.. .....+..+.+.+.++.++..+|++.|=.|.
T Consensus 67 ~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di 123 (305)
T TIGR01763 67 TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDA 123 (305)
T ss_pred hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHH
Confidence 6889999999875321 1233445667777777788889999998885
No 475
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=32.80 E-value=1e+02 Score=20.85 Aligned_cols=43 Identities=5% Similarity=-0.052 Sum_probs=28.3
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
.+.|.+.+-. .. .++..+......+++..+++++++.|.-.-.
T Consensus 38 ~~pdiv~~S~--~~-~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~ 80 (127)
T cd02068 38 LKPDVVGISL--MT-SAIYEALELAKIAKEVLPNVIVVVGGPHATF 80 (127)
T ss_pred cCCCEEEEee--cc-ccHHHHHHHHHHHHHHCCCCEEEECCcchhh
Confidence 4667665443 22 2344566677777777789999998877653
No 476
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.22 E-value=1.5e+02 Score=20.36 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=27.8
Q ss_pred cCCcEEEEEEeCCCh-------hhHHHHHHHHHHHHhhCCCCeEEEEe
Q psy17235 21 KFAEAAILVFSLDNA-------ASFHVLSQHLLEIVTYAENAKIFLCG 61 (170)
Q Consensus 21 ~~ad~iilv~D~t~~-------~Sf~~~~~~~~~i~~~~~~~pvvlvg 61 (170)
..+|.+++.+-.+|. ...+.+..+++.++...+++++++++
T Consensus 39 ~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 86 (157)
T cd01833 39 AKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAANPDVKIIVAT 86 (157)
T ss_pred CCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 467888888876664 22455556677776666788877765
No 477
>KOG1486|consensus
Probab=32.16 E-value=1.6e+02 Score=23.67 Aligned_cols=41 Identities=17% Similarity=0.085 Sum_probs=31.8
Q ss_pred CCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhh
Q psy17235 54 NAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVE 103 (170)
Q Consensus 54 ~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~ 103 (170)
-+|++-|-||+| +|+.++..++|+..+.. ..|+.-.-|++.
T Consensus 238 Y~~ClYvYnKID------~vs~eevdrlAr~Pnsv---ViSC~m~lnld~ 278 (364)
T KOG1486|consen 238 YIKCLYVYNKID------QVSIEEVDRLARQPNSV---VISCNMKLNLDR 278 (364)
T ss_pred EEEEEEEeeccc------eecHHHHHHHhcCCCcE---EEEeccccCHHH
Confidence 468888999999 68889999999887752 457777777664
No 478
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=32.04 E-value=2.1e+02 Score=21.24 Aligned_cols=69 Identities=9% Similarity=0.061 Sum_probs=46.9
Q ss_pred cCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcc
Q psy17235 21 KFAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQE 94 (170)
Q Consensus 21 ~~ad~iilv~D~t~~--~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~S 94 (170)
.+||.+-+|.++... ..++.+..++..+.+.+.+.|+.++.....+.. -....+.+.+.+.|.. |+.+|
T Consensus 81 ~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~----~~i~~a~ria~e~GaD-~IKTs 151 (203)
T cd00959 81 DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTD----EEIIKACEIAIEAGAD-FIKTS 151 (203)
T ss_pred cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCH----HHHHHHHHHHHHhCCC-EEEcC
Confidence 389999999998642 234556677888887777788877766665521 1123456778888886 55665
No 479
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=31.97 E-value=88 Score=21.45 Aligned_cols=40 Identities=5% Similarity=0.027 Sum_probs=29.7
Q ss_pred CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCC
Q psy17235 53 ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVE 97 (170)
Q Consensus 53 ~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 97 (170)
..-|++++|.-.. +.-..++..+++...|+|.+....++.
T Consensus 11 A~rP~il~G~g~~-----~~~a~~~l~~lae~~~~Pv~~t~~~kg 50 (137)
T PF00205_consen 11 AKRPVILAGRGAR-----RSGAAEELRELAEKLGIPVATTPMGKG 50 (137)
T ss_dssp -SSEEEEE-HHHH-----HTTCHHHHHHHHHHHTSEEEEEGGGTT
T ss_pred CCCEEEEEcCCcC-----hhhHHHHHHHHHHHHCCCEEecCcccc
Confidence 4789999998775 334678999999999999876665553
No 480
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.41 E-value=1.8e+02 Score=20.29 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=27.8
Q ss_pred cCCcEEEEEEeCCChh------h-HHHHHHHHHHHHhhCCCCeEEEEee
Q psy17235 21 KFAEAAILVFSLDNAA------S-FHVLSQHLLEIVTYAENAKIFLCGN 62 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~------S-f~~~~~~~~~i~~~~~~~pvvlvgn 62 (170)
...|.+++.+-.+|.. . .+.+...+..+....+++++++++-
T Consensus 47 ~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~ 95 (169)
T cd01828 47 LQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSI 95 (169)
T ss_pred cCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 4679999999877742 2 2344555666666557888887654
No 481
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=31.31 E-value=1.8e+02 Score=20.38 Aligned_cols=65 Identities=12% Similarity=-0.055 Sum_probs=37.7
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEc
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQ 93 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~ 93 (170)
++|++ ..+.-.-.+....+.....+++.. .++|+++-|+=.=.. -..++.+...++.|+...+..
T Consensus 50 ~adiV--glS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~-----~d~~~~~~~L~~~Gv~~vf~p 115 (128)
T cd02072 50 DADAI--LVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGK-----QDFEDVEKRFKEMGFDRVFAP 115 (128)
T ss_pred CCCEE--EEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCCh-----hhhHHHHHHHHHcCCCEEECc
Confidence 56644 445555567777777777777765 477777766532110 111233455667888766654
No 482
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=30.70 E-value=1e+02 Score=26.64 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=34.4
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCe
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRR 89 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~ 89 (170)
.++|. +++|.++..+ ..+.+.++.++...+++|++. ||= .+.+.+..+. +.|+..
T Consensus 236 aGVd~--i~~D~a~g~~-~~~~~~i~~i~~~~~~~~vi~-g~~---------~t~~~~~~l~-~~G~d~ 290 (475)
T TIGR01303 236 AGVDV--LVIDTAHGHQ-VKMISAIKAVRALDLGVPIVA-GNV---------VSAEGVRDLL-EAGANI 290 (475)
T ss_pred hCCCE--EEEeCCCCCc-HHHHHHHHHHHHHCCCCeEEE-ecc---------CCHHHHHHHH-HhCCCE
Confidence 45665 7789999777 455566677776667888765 443 3444454444 456543
No 483
>PLN02759 Formate--tetrahydrofolate ligase
Probab=30.50 E-value=3e+02 Score=24.78 Aligned_cols=43 Identities=9% Similarity=0.109 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCC
Q psy17235 40 VLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSS 87 (170)
Q Consensus 40 ~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~ 87 (170)
++...++.++++ ++|+||..|+..-.. .-..+..+++|.+.|+
T Consensus 438 NL~~Hi~n~~~f--g~pvVVaiN~F~~Dt---~~Ei~~v~~~~~~~ga 480 (637)
T PLN02759 438 NLARHIENTKSY--GVNVVVAINMFATDT---EAELEAVRQAALAAGA 480 (637)
T ss_pred hHHHHHHHHHHc--CCCeEEEecCCCCCC---HHHHHHHHHHHHHcCC
Confidence 334455555554 799999999997543 3334557788888885
No 484
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=30.46 E-value=2.7e+02 Score=22.35 Aligned_cols=60 Identities=8% Similarity=-0.019 Sum_probs=37.7
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS 83 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~ 83 (170)
.++|+++++--.--+.+-+.+..++..+....+++|+++- |=-... ...++.+...++++
T Consensus 102 ~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iY-n~P~~t--g~~l~~~~l~~L~~ 161 (309)
T cd00952 102 LGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIY-ANPEAF--KFDFPRAAWAELAQ 161 (309)
T ss_pred hCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEE-cCchhc--CCCCCHHHHHHHhc
Confidence 3899999885433344557777888888776556898874 211111 23566677777764
No 485
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=30.45 E-value=3.6e+02 Score=23.35 Aligned_cols=85 Identities=11% Similarity=0.128 Sum_probs=46.2
Q ss_pred CCcEEEEE--EeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcc
Q psy17235 22 FAEAAILV--FSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQ 99 (170)
Q Consensus 22 ~ad~iilv--~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 99 (170)
..|+++++ .|--+.+.... --+.+.+..-++|+|..||+.-- ++.++.....+..+|+.-.....-
T Consensus 120 ~PDIILLaGGtDGG~~e~~l~---NA~~La~~~~~~pIIyAGN~~a~---------~~V~~il~~~~~~~~i~eNV~P~i 187 (463)
T TIGR01319 120 NLDIILFAGGTDGGEEECGIH---NAKMLAEHGLDCAIIVAGNKDIQ---------DEVQEIFDHADIFYRITDNVLPDL 187 (463)
T ss_pred CCCEEEEeCCcCCCchHHHHH---HHHHHHhcCCCCcEEEeCCHHHH---------HHHHHHHhcCCceEEecCCcCCCC
Confidence 57777776 34344444222 12223333357999999999752 345555555566666555544444
Q ss_pred hhhhHHHHHHHHHHHHHHh
Q psy17235 100 EVVEAEQVQQEACDKFEQM 118 (170)
Q Consensus 100 ~v~~~~~~~~~~~~~~~~~ 118 (170)
++...+-..+.+++.|.+.
T Consensus 188 ~~ln~epaR~~I~~vF~~~ 206 (463)
T TIGR01319 188 DHLNPEAAREAICDIFLKK 206 (463)
T ss_pred CCcCchHHHHHHHHHHHHH
Confidence 4444444555566665433
No 486
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=30.21 E-value=56 Score=22.96 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=32.7
Q ss_pred hhhccCCcEEEEEEeCCCh--hh--------HHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 17 SSYYKFAEAAILVFSLDNA--AS--------FHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 17 ~~~~~~ad~iilv~D~t~~--~S--------f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
...++++|.+++.-..... +| ..-++.+.+.+.++.++..++++.|=+|.
T Consensus 64 ~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~ 123 (141)
T PF00056_consen 64 YEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDV 123 (141)
T ss_dssp GGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHH
T ss_pred ccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHH
Confidence 4557889999988765432 11 12223566777777788888998888774
No 487
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=29.88 E-value=71 Score=25.62 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=34.3
Q ss_pred hhccCCcEEEEEEeCCCh---hh-------HHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 18 SYYKFAEAAILVFSLDNA---AS-------FHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~---~S-------f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
..+++||.+|+....... +. ..-++.+.+.+.++.++.-+++++|-+|.
T Consensus 60 ~~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 457899999998876321 11 22234566677777788889999999885
No 488
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=29.56 E-value=2e+02 Score=20.00 Aligned_cols=62 Identities=8% Similarity=0.091 Sum_probs=39.1
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhc-CC
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRR-SS 87 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~-~~ 87 (170)
...|.+++++-.+|...-+++...++.+ .++.++++++...... ...--.....++|+++ ++
T Consensus 49 ~~~d~vvi~lGtNd~~~~~nl~~ii~~~---~~~~~ivlv~~~~~~~--~~~~~n~~~~~~a~~~~~v 111 (150)
T cd01840 49 KLRKTVVIGLGTNGPFTKDQLDELLDAL---GPDRQVYLVNPHVPRP--WEPDVNAYLLDAAKKYKNV 111 (150)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHc---CCCCEEEEEECCCCcc--hHHHHHHHHHHHHHHCCCc
Confidence 3579999999999987766666655544 2457888888763211 1111123466777777 54
No 489
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=29.55 E-value=1.1e+02 Score=24.85 Aligned_cols=49 Identities=18% Similarity=0.233 Sum_probs=34.7
Q ss_pred hhccCCcEEEEEEeCCChh--h-H-------HHHHHHHHHHHhhC-CCCeEEEEeeCCCC
Q psy17235 18 SYYKFAEAAILVFSLDNAA--S-F-------HVLSQHLLEIVTYA-ENAKIFLCGNKSDL 66 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~~--S-f-------~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl 66 (170)
..+.++|.+|+........ + . .-++.+.+.+.++. ++.-+++++|=+|.
T Consensus 74 ~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~ 133 (322)
T cd01338 74 VAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNT 133 (322)
T ss_pred HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHH
Confidence 4477999999998875422 1 2 22345667777777 48889999998885
No 490
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=29.18 E-value=2.9e+02 Score=21.87 Aligned_cols=81 Identities=16% Similarity=0.088 Sum_probs=43.0
Q ss_pred eEEecCCccccccch-hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEE-EEeeCCCCCCCCCCCCHHH
Q psy17235 2 QLWDTGGMERVASIT-SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF-LCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~-~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvv-lvgnK~Dl~~~~~~v~~~~ 77 (170)
-|.||+|.-....+. +.....||.+|++... ++.|+..+...++.+.... ++.+++ ++.|+.. . ....+.
T Consensus 123 IlID~~~~~~~nal~~~~~~~aAD~vIIPv~p-e~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~r--t---~~~~~~ 196 (295)
T PRK13234 123 VSYDVLGDVVCGGFAMPIRENKAQEIYIVMSG-EMMALYAANNIAKGILKYANSGGVRLGGLICNERQ--T---DRELEL 196 (295)
T ss_pred EEEEcCCCceECCCccccccccCceEEEecCc-cHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCC--C---chHHHH
Confidence 478886532111111 1112478988888764 5677877776665555443 345443 6778432 1 223333
Q ss_pred HHHHHHhcCCC
Q psy17235 78 MENFWSRRSSR 88 (170)
Q Consensus 78 ~~~~a~~~~~~ 88 (170)
...+.+.++..
T Consensus 197 ~e~l~e~~g~~ 207 (295)
T PRK13234 197 AEALAARLGSK 207 (295)
T ss_pred HHHHHHHhCCc
Confidence 44555555643
No 491
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=29.15 E-value=1.5e+02 Score=24.02 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=35.4
Q ss_pred hhccCCcEEEEEEeCCCh---hhHH-------HHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 18 SYYKFAEAAILVFSLDNA---ASFH-------VLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~---~Sf~-------~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
..+.++|.+|+..-.... +.++ -++.+.+.+..+.++.-++++.|=+|.
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhh
Confidence 468899999999887432 2222 223556677777788889999999994
No 492
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=28.94 E-value=3e+02 Score=22.01 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=45.1
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeE
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRF 90 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~ 90 (170)
++|+++++=-.-.+.+.+.+-.|+..+.+.. +.|++| -|--... ...++.+...++++..++..+
T Consensus 99 Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~-~lPvil-YN~P~~t--g~~l~~e~i~~la~~~nivgi 163 (299)
T COG0329 99 GADGILVVPPYYNKPSQEGLYAHFKAIAEAV-DLPVIL-YNIPSRT--GVDLSPETIARLAEHPNIVGV 163 (299)
T ss_pred CCCEEEEeCCCCcCCChHHHHHHHHHHHHhc-CCCEEE-EeCcccc--CCCCCHHHHHHHhcCCCEEEE
Confidence 7999999976667777888888888888876 888665 3433322 345677888888873344333
No 493
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=28.87 E-value=98 Score=24.72 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=33.8
Q ss_pred hccCCcEEEEEEeCCCh---hh-------HHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 19 YYKFAEAAILVFSLDNA---AS-------FHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~~---~S-------f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
.+.++|++|+....... +. ..-++.+.+.+.+++++.-+++++|-.|.
T Consensus 65 ~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~ 122 (306)
T cd05291 65 DCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDV 122 (306)
T ss_pred HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHH
Confidence 46799999999877421 11 22234566677777788889999998885
No 494
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=28.81 E-value=70 Score=24.86 Aligned_cols=49 Identities=18% Similarity=0.265 Sum_probs=33.6
Q ss_pred hhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 18 SYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~----------~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
..+.+||.+++....... ....-++...+.+.+++++.-++++.|-.|.
T Consensus 66 ~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~ 124 (263)
T cd00650 66 EAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDI 124 (263)
T ss_pred HHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHH
Confidence 457789999987755322 1222334566777777788888888888875
No 495
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=28.81 E-value=89 Score=24.44 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=24.2
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235 18 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE 67 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~ 67 (170)
..-+++||+|++ ..... ...+..+ .+ .++|+|+++.-.+..
T Consensus 52 l~~~~vDGiI~~-s~~~~--~~~l~~~----~~--~~iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 52 LLQRRVDGIILA-SSEND--DEELRRL----IK--SGIPVVLIDRYIDNP 92 (279)
T ss_dssp HHHTTSSEEEEE-SSSCT--CHHHHHH----HH--TTSEEEEESS-SCTT
T ss_pred HHhcCCCEEEEe-cccCC--hHHHHHH----HH--cCCCEEEEEeccCCc
Confidence 334589999988 33322 2222222 22 279999999987765
No 496
>PRK06756 flavodoxin; Provisional
Probab=28.66 E-value=1.2e+02 Score=21.02 Aligned_cols=44 Identities=9% Similarity=-0.024 Sum_probs=28.0
Q ss_pred hccCCcEEEEEEeCCChhhHH-HHHHHHHHHHhhC-CCCeEEEEee
Q psy17235 19 YYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYA-ENAKIFLCGN 62 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~~~Sf~-~~~~~~~~i~~~~-~~~pvvlvgn 62 (170)
.+.+.|++++....-....+. .+..|+..+.... .+.|+.++|+
T Consensus 46 ~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt 91 (148)
T PRK06756 46 ILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGS 91 (148)
T ss_pred HHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeC
Confidence 456788888887554322222 3566666664333 6788888888
No 497
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=28.50 E-value=3.8e+02 Score=23.90 Aligned_cols=68 Identities=9% Similarity=0.019 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHh-cCCCeEEEcc--cCCcchhhhHHHHHHHHHHHH
Q psy17235 39 HVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSR-RSSRRFKPQE--VVEPQEVVEAEQVQQEACDKF 115 (170)
Q Consensus 39 ~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~-~~~~~~~e~S--a~~~~~v~~~~~~~~~~~~~~ 115 (170)
.++...++.+.++ ++|+||..|+..-.. .-..+..+++|.+ .+.. +..|. ++-|++-. .+.+.+.+..
T Consensus 380 ~NL~~Hi~n~~~f--g~pvVVaiN~F~~Dt---~~Ei~~~~~~~~~~~~~~-~~~~~~wa~GGeGa~---eLA~~Vv~a~ 450 (578)
T PRK13506 380 ANLKWHINNVAQY--GLPVVVAINRFPTDT---DEELEWLKEAVLLTGAFG-CEISEAFAQGGEGAT---ALAQAVVRAC 450 (578)
T ss_pred HHHHHHHHHHHHc--CCCeEEEecCCCCCC---HHHHHHHHHHHHHcCCCc-EEEechhhccchhHH---HHHHHHHHHh
Confidence 3455556666654 799999999986533 2233456778887 4544 33332 34444433 3444444443
No 498
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=28.31 E-value=92 Score=24.87 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=33.8
Q ss_pred hhccCCcEEEEEEeCCCh---h-------hHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 18 SYYKFAEAAILVFSLDNA---A-------SFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~---~-------Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
..+.++|.+++....... . +..-++...+.+.+++++.-+++++|-+|.
T Consensus 62 ~~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~ 120 (300)
T cd00300 62 ADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDI 120 (300)
T ss_pred HHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHH
Confidence 467899999999876331 1 112223455666777788889999999886
No 499
>PLN00135 malate dehydrogenase
Probab=28.20 E-value=1.2e+02 Score=24.47 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=34.7
Q ss_pred hhccCCcEEEEEEeCCCh---hhHH-------HHHHHHHHHHhh-CCCCeEEEEeeCCCC
Q psy17235 18 SYYKFAEAAILVFSLDNA---ASFH-------VLSQHLLEIVTY-AENAKIFLCGNKSDL 66 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~---~Sf~-------~~~~~~~~i~~~-~~~~pvvlvgnK~Dl 66 (170)
..+.++|++|+....... ...+ -++...+.+.++ .++..+++++|=+|.
T Consensus 54 ~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv 113 (309)
T PLN00135 54 EACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANT 113 (309)
T ss_pred HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHH
Confidence 457799999999887432 1121 233556777775 689999999999986
No 500
>COG5400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.02 E-value=57 Score=24.15 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=12.9
Q ss_pred CCcEEEEEEeCCChhhH
Q psy17235 22 FAEAAILVFSLDNAASF 38 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf 38 (170)
++.+..+||++.+.+.+
T Consensus 131 gsRvmmLvYnL~~v~al 147 (205)
T COG5400 131 GSRVMMLVYNLDDVDAL 147 (205)
T ss_pred ceEEEEEEecCCCHHHH
Confidence 46789999999876543
Done!