Query psy17235
Match_columns 170
No_of_seqs 216 out of 1594
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 16:47:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 3.3E-29 1.1E-33 190.5 11.4 103 1-105 64-167 (216)
2 2fu5_C RAS-related protein RAB 99.9 2.3E-23 7.7E-28 152.3 13.7 102 1-104 59-161 (183)
3 2hup_A RAS-related protein RAB 99.9 1.7E-23 5.7E-28 156.3 12.9 103 1-104 80-183 (201)
4 3q3j_B RHO-related GTP-binding 99.9 1.5E-23 5.2E-28 158.1 12.4 104 1-104 77-193 (214)
5 3reg_A RHO-like small GTPase; 99.9 4.3E-23 1.5E-27 152.6 13.2 104 1-104 73-178 (194)
6 2atx_A Small GTP binding prote 99.9 6.1E-23 2.1E-27 151.6 13.8 104 1-104 68-183 (194)
7 1m7b_A RND3/RHOE small GTP-bin 99.9 3.9E-23 1.3E-27 151.8 12.0 104 1-104 57-173 (184)
8 3t1o_A Gliding protein MGLA; G 99.9 3.4E-23 1.2E-27 152.4 10.8 101 1-104 76-182 (198)
9 3t5g_A GTP-binding protein RHE 99.9 1.3E-22 4.6E-27 147.9 13.7 102 1-104 56-159 (181)
10 3q72_A GTP-binding protein RAD 99.9 1.2E-22 4.3E-27 145.9 13.3 102 1-104 51-154 (166)
11 2a5j_A RAS-related protein RAB 99.9 1.3E-22 4.5E-27 149.7 13.2 102 1-104 72-174 (191)
12 3cbq_A GTP-binding protein REM 99.9 1.1E-22 3.6E-27 151.5 12.4 102 1-104 74-178 (195)
13 3tw8_B RAS-related protein RAB 99.9 2.8E-22 9.4E-27 145.6 14.3 102 1-104 60-161 (181)
14 2q3h_A RAS homolog gene family 99.9 1.3E-22 4.6E-27 150.6 12.8 104 1-104 70-185 (201)
15 3tkl_A RAS-related protein RAB 99.9 2E-22 7E-27 148.5 13.6 102 1-104 67-169 (196)
16 2ew1_A RAS-related protein RAB 99.9 9.9E-23 3.4E-27 152.6 11.8 102 1-104 77-179 (201)
17 1gwn_A RHO-related GTP-binding 99.9 1.2E-22 4.1E-27 152.4 12.2 104 1-104 78-194 (205)
18 1zbd_A Rabphilin-3A; G protein 99.9 3.5E-22 1.2E-26 148.5 14.6 102 1-104 59-161 (203)
19 3kkq_A RAS-related protein M-R 99.9 1.6E-22 5.3E-27 147.8 12.4 102 1-104 68-172 (183)
20 3dz8_A RAS-related protein RAB 99.9 5.7E-23 1.9E-27 151.7 10.0 102 1-104 74-176 (191)
21 3bwd_D RAC-like GTP-binding pr 99.9 6.3E-23 2.2E-27 149.5 10.0 103 1-104 58-171 (182)
22 3q85_A GTP-binding protein REM 99.9 1.4E-22 4.9E-27 146.0 11.7 102 1-104 53-157 (169)
23 2j0v_A RAC-like GTP-binding pr 99.9 3.9E-23 1.3E-27 154.8 8.7 103 1-104 59-170 (212)
24 2gf9_A RAS-related protein RAB 99.9 2.7E-22 9.3E-27 147.7 13.1 102 1-104 73-175 (189)
25 3c5c_A RAS-like protein 12; GD 99.9 1.4E-22 4.9E-27 149.5 11.4 101 1-104 71-176 (187)
26 2bcg_Y Protein YP2, GTP-bindin 99.9 6.5E-22 2.2E-26 147.5 14.9 102 1-104 59-161 (206)
27 2bme_A RAB4A, RAS-related prot 99.9 2.8E-22 9.6E-27 146.7 12.5 102 1-104 61-163 (186)
28 3ihw_A Centg3; RAS, centaurin, 99.9 2.5E-22 8.5E-27 148.1 12.2 98 1-104 69-170 (184)
29 1c1y_A RAS-related protein RAP 99.9 1.9E-22 6.5E-27 144.7 11.2 103 1-104 53-157 (167)
30 2gco_A H9, RHO-related GTP-bin 99.9 3.5E-22 1.2E-26 148.8 12.8 103 1-104 75-190 (201)
31 2efe_B Small GTP-binding prote 99.9 8.8E-22 3E-26 143.3 14.6 102 1-104 63-165 (181)
32 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.3E-22 7.8E-27 146.8 11.4 104 1-104 55-170 (186)
33 2j1l_A RHO-related GTP-binding 99.9 2E-22 6.7E-27 151.8 11.1 104 1-104 84-199 (214)
34 3oes_A GTPase rhebl1; small GT 99.9 3.6E-22 1.2E-26 148.6 12.3 102 1-104 74-177 (201)
35 2yc2_C IFT27, small RAB-relate 99.9 6.1E-22 2.1E-26 147.1 13.5 103 1-104 75-182 (208)
36 2g6b_A RAS-related protein RAB 99.9 4.2E-22 1.4E-26 144.9 12.3 102 1-104 62-164 (180)
37 1r2q_A RAS-related protein RAB 99.9 5.1E-22 1.7E-26 142.6 12.6 102 1-104 57-159 (170)
38 1z0f_A RAB14, member RAS oncog 99.9 4.1E-22 1.4E-26 144.4 12.0 102 1-104 66-168 (179)
39 2il1_A RAB12; G-protein, GDP, 99.9 1.6E-22 5.6E-27 149.6 10.1 103 1-104 77-180 (192)
40 2iwr_A Centaurin gamma 1; ANK 99.9 7.2E-22 2.5E-26 143.7 13.2 98 1-104 56-159 (178)
41 2hxs_A RAB-26, RAS-related pro 99.9 3.3E-22 1.1E-26 145.2 11.3 102 1-104 58-163 (178)
42 1z08_A RAS-related protein RAB 99.9 2.3E-22 8E-27 144.8 10.4 102 1-104 57-159 (170)
43 2nzj_A GTP-binding protein REM 99.9 9.1E-22 3.1E-26 142.3 13.5 102 1-104 54-159 (175)
44 3bc1_A RAS-related protein RAB 99.9 6.8E-22 2.3E-26 144.9 12.9 102 1-104 72-175 (195)
45 2o52_A RAS-related protein RAB 99.9 4.1E-22 1.4E-26 148.4 11.8 102 1-104 76-178 (200)
46 1g16_A RAS-related protein SEC 99.9 6.2E-22 2.1E-26 142.4 12.2 101 1-104 54-155 (170)
47 2g3y_A GTP-binding protein GEM 99.9 5.1E-22 1.8E-26 150.2 12.1 102 1-104 89-193 (211)
48 1z0j_A RAB-22, RAS-related pro 99.9 1.1E-21 3.7E-26 141.1 13.0 102 1-104 57-159 (170)
49 1ky3_A GTP-binding protein YPT 99.9 6.4E-22 2.2E-26 143.8 11.8 104 1-104 60-168 (182)
50 2oil_A CATX-8, RAS-related pro 99.9 7.3E-22 2.5E-26 145.7 12.2 102 1-104 76-178 (193)
51 1z2a_A RAS-related protein RAB 99.9 5.9E-22 2E-26 142.2 11.3 102 1-104 56-157 (168)
52 2bov_A RAla, RAS-related prote 99.9 1.1E-21 3.9E-26 145.6 12.9 102 1-104 64-167 (206)
53 1ek0_A Protein (GTP-binding pr 99.9 1.1E-21 3.7E-26 140.9 12.3 103 1-104 54-159 (170)
54 3cpj_B GTP-binding protein YPT 99.9 6.5E-22 2.2E-26 149.7 11.6 102 1-104 64-166 (223)
55 4dsu_A GTPase KRAS, isoform 2B 99.9 7.2E-22 2.5E-26 144.5 11.5 101 1-104 54-156 (189)
56 4gzl_A RAS-related C3 botulinu 99.9 2.8E-22 9.4E-27 150.0 9.2 104 1-104 80-195 (204)
57 1kao_A RAP2A; GTP-binding prot 99.9 5.7E-22 2E-26 141.8 10.5 102 1-104 53-156 (167)
58 2fv8_A H6, RHO-related GTP-bin 99.9 1.2E-21 4.2E-26 146.5 12.7 104 1-104 75-190 (207)
59 1u8z_A RAS-related protein RAL 99.9 5E-22 1.7E-26 142.2 10.2 102 1-104 54-157 (168)
60 2fg5_A RAB-22B, RAS-related pr 99.9 1.2E-21 4.2E-26 144.7 12.5 102 1-104 74-176 (192)
61 2fn4_A P23, RAS-related protei 99.9 9.6E-22 3.3E-26 142.7 11.6 102 1-104 59-162 (181)
62 2f7s_A C25KG, RAS-related prot 99.9 5.1E-22 1.7E-26 149.2 9.6 102 1-104 86-189 (217)
63 3r7w_B Gtpase2, GTP-binding pr 99.9 8.4E-23 2.9E-27 163.4 5.5 102 1-104 48-164 (331)
64 1f6b_A SAR1; gtpases, N-termin 99.9 2E-21 6.9E-26 144.7 12.5 101 1-104 71-189 (198)
65 2a9k_A RAS-related protein RAL 99.9 1.3E-21 4.5E-26 142.7 11.2 102 1-104 68-171 (187)
66 2p5s_A RAS and EF-hand domain 99.9 8.7E-22 3E-26 146.3 10.2 102 1-104 79-187 (199)
67 1wms_A RAB-9, RAB9, RAS-relate 99.9 3.3E-21 1.1E-25 139.8 13.0 102 1-104 58-164 (177)
68 2cjw_A GTP-binding protein GEM 99.9 4.5E-21 1.5E-25 142.3 14.0 102 1-104 58-162 (192)
69 3clv_A RAB5 protein, putative; 99.9 7.1E-21 2.4E-25 140.3 14.8 100 1-104 95-194 (208)
70 1z06_A RAS-related protein RAB 99.9 1.6E-21 5.6E-26 143.5 11.3 102 1-104 71-178 (189)
71 3cph_A RAS-related protein SEC 99.9 5.4E-21 1.9E-25 142.7 14.1 101 1-104 71-172 (213)
72 2y8e_A RAB-protein 6, GH09086P 99.9 2.5E-21 8.4E-26 140.3 11.1 102 1-104 65-167 (179)
73 1x3s_A RAS-related protein RAB 99.9 5.4E-21 1.8E-25 140.6 12.5 101 1-104 66-168 (195)
74 4djt_A GTP-binding nuclear pro 99.9 5.3E-21 1.8E-25 143.7 12.2 102 1-104 63-165 (218)
75 1m2o_B GTP-binding protein SAR 99.9 8.3E-21 2.8E-25 140.4 12.7 101 1-104 69-182 (190)
76 2atv_A RERG, RAS-like estrogen 99.9 3.5E-21 1.2E-25 142.6 10.5 101 1-104 78-181 (196)
77 1vg8_A RAS-related protein RAB 99.8 1.4E-20 4.8E-25 139.9 13.2 102 1-104 59-165 (207)
78 3l0i_B RAS-related protein RAB 99.8 5.2E-22 1.8E-26 147.6 5.2 102 1-104 84-186 (199)
79 1r8s_A ADP-ribosylation factor 99.8 1.7E-21 5.7E-26 139.7 7.0 100 1-104 46-152 (164)
80 2erx_A GTP-binding protein DI- 99.8 5.1E-21 1.7E-25 137.6 9.2 102 1-104 53-157 (172)
81 3con_A GTPase NRAS; structural 99.8 3.5E-20 1.2E-24 136.2 13.3 101 1-104 71-173 (190)
82 2ce2_X GTPase HRAS; signaling 99.8 2.5E-20 8.4E-25 132.9 12.1 101 1-104 53-155 (166)
83 3gj0_A GTP-binding nuclear pro 99.8 1E-20 3.5E-25 142.7 10.1 100 1-104 66-165 (221)
84 2wkq_A NPH1-1, RAS-related C3 99.8 1.5E-20 5.1E-25 149.2 11.4 104 1-104 205-320 (332)
85 4bas_A ADP-ribosylation factor 99.8 1.8E-20 6.3E-25 138.3 10.8 100 1-104 65-179 (199)
86 1zj6_A ADP-ribosylation factor 99.8 6.3E-20 2.1E-24 134.8 13.5 100 1-104 62-168 (187)
87 1upt_A ARL1, ADP-ribosylation 99.8 1E-20 3.5E-25 136.2 9.0 100 1-104 53-159 (171)
88 3llu_A RAS-related GTP-binding 99.8 4.5E-21 1.5E-25 142.3 7.2 102 1-104 71-187 (196)
89 2zej_A Dardarin, leucine-rich 99.8 2.8E-21 9.7E-26 142.0 5.8 103 1-104 58-168 (184)
90 1cip_A Protein (guanine nucleo 99.8 6E-21 2.1E-25 154.5 8.0 104 1-105 195-335 (353)
91 2xtz_A Guanine nucleotide-bind 99.8 7E-21 2.4E-25 154.2 7.9 104 1-105 185-336 (354)
92 2gf0_A GTP-binding protein DI- 99.8 2.8E-20 9.6E-25 137.3 10.2 101 1-104 58-161 (199)
93 2h57_A ADP-ribosylation factor 99.8 9.6E-20 3.3E-24 134.1 13.1 101 1-104 69-177 (190)
94 3th5_A RAS-related C3 botulinu 99.7 3.9E-22 1.3E-26 148.7 0.0 104 1-104 80-195 (204)
95 2h17_A ADP-ribosylation factor 99.8 1.2E-19 4E-24 132.7 13.0 100 1-104 67-173 (181)
96 1fzq_A ADP-ribosylation factor 99.8 8.8E-20 3E-24 133.8 12.1 100 1-104 62-168 (181)
97 2x77_A ADP-ribosylation factor 99.8 1.3E-20 4.5E-25 138.5 7.6 100 1-104 68-174 (189)
98 1ksh_A ARF-like protein 2; sma 99.8 8.9E-20 3.1E-24 133.5 11.7 100 1-104 64-170 (186)
99 2b6h_A ADP-ribosylation factor 99.8 1.3E-20 4.5E-25 139.5 7.3 100 1-104 75-181 (192)
100 1moz_A ARL1, ADP-ribosylation 99.8 1.7E-19 5.9E-24 131.4 12.2 101 1-104 64-170 (183)
101 1azs_C GS-alpha; complex (lyas 99.8 2.1E-20 7.1E-25 153.4 7.9 104 1-105 219-376 (402)
102 3ohm_A Guanine nucleotide-bind 99.8 3.6E-20 1.2E-24 148.4 6.7 103 1-105 169-309 (327)
103 1zd9_A ADP-ribosylation factor 99.8 5.1E-19 1.7E-23 130.2 11.9 100 1-104 69-175 (188)
104 1zcb_A G alpha I/13; GTP-bindi 99.8 8.8E-20 3E-24 148.2 7.5 104 1-105 203-344 (362)
105 3r7w_A Gtpase1, GTP-binding pr 99.8 3E-19 1E-23 141.9 9.0 103 1-104 54-171 (307)
106 3c5h_A Glucocorticoid receptor 99.8 2E-19 6.7E-24 139.3 7.6 95 6-104 125-245 (255)
107 2f9l_A RAB11B, member RAS onco 99.8 5.2E-18 1.8E-22 125.9 13.0 102 1-104 56-158 (199)
108 2fh5_B SR-beta, signal recogni 99.8 4.3E-19 1.5E-23 132.9 7.0 68 1-68 56-129 (214)
109 4fid_A G protein alpha subunit 99.8 2E-19 6.9E-24 144.6 5.2 105 1-105 163-319 (340)
110 1u0l_A Probable GTPase ENGC; p 99.8 1.1E-18 3.6E-23 138.5 8.8 98 1-105 65-164 (301)
111 3o47_A ADP-ribosylation factor 99.8 3.6E-18 1.2E-22 137.0 11.8 98 1-104 211-317 (329)
112 3lvq_E ARF-GAP with SH3 domain 99.7 1.1E-17 3.8E-22 140.4 12.3 101 1-104 368-474 (497)
113 2qu8_A Putative nucleolar GTP- 99.7 6.6E-17 2.3E-21 122.5 14.1 102 1-104 78-195 (228)
114 1oix_A RAS-related protein RAB 99.7 4.8E-17 1.6E-21 120.3 11.2 101 2-104 81-182 (191)
115 2cxx_A Probable GTP-binding pr 99.7 5.4E-18 1.9E-22 124.0 5.6 100 1-104 46-174 (190)
116 2wji_A Ferrous iron transport 99.7 1E-17 3.4E-22 120.9 6.3 96 1-104 52-155 (165)
117 2lkc_A Translation initiation 99.7 1.1E-16 3.7E-21 115.8 10.3 94 1-104 57-161 (178)
118 1nrj_B SR-beta, signal recogni 99.7 1.2E-17 4.2E-22 125.2 4.9 99 1-101 57-171 (218)
119 3dpu_A RAB family protein; roc 99.7 9.1E-17 3.1E-21 136.2 9.9 99 1-104 100-198 (535)
120 2dyk_A GTP-binding protein; GT 99.6 1.3E-16 4.4E-21 113.5 5.5 95 1-104 51-152 (161)
121 1svi_A GTP-binding protein YSX 99.6 4.1E-16 1.4E-20 114.6 8.2 97 1-104 71-185 (195)
122 2wjg_A FEOB, ferrous iron tran 99.6 3.1E-16 1E-20 114.6 5.3 96 1-104 56-159 (188)
123 3pqc_A Probable GTP-binding pr 99.6 8.1E-16 2.8E-20 112.6 7.1 99 1-104 70-184 (195)
124 2gj8_A MNME, tRNA modification 99.6 1.7E-16 5.7E-21 115.5 2.8 94 1-104 54-156 (172)
125 3iev_A GTP-binding protein ERA 99.6 4.6E-15 1.6E-19 117.8 10.1 101 1-104 61-172 (308)
126 3b1v_A Ferrous iron uptake tra 99.6 2.1E-15 7.2E-20 118.0 5.9 97 1-105 51-155 (272)
127 3a1s_A Iron(II) transport prot 99.6 5.9E-15 2E-19 114.5 7.2 97 1-105 54-158 (258)
128 4dcu_A GTP-binding protein ENG 99.5 1.6E-14 5.6E-19 120.2 9.6 101 1-105 245-360 (456)
129 2e87_A Hypothetical protein PH 99.5 1.2E-13 3.9E-18 111.7 13.0 100 1-104 216-326 (357)
130 2hjg_A GTP-binding protein ENG 99.5 2.7E-14 9.2E-19 118.3 8.7 101 1-105 225-340 (436)
131 1wf3_A GTP-binding protein; GT 99.5 3.3E-14 1.1E-18 112.7 8.4 97 1-104 57-163 (301)
132 3iby_A Ferrous iron transport 99.5 7.5E-15 2.6E-19 113.8 3.4 97 1-105 50-158 (256)
133 2yv5_A YJEQ protein; hydrolase 99.5 4.8E-14 1.6E-18 111.7 8.0 94 8-105 65-160 (302)
134 3gee_A MNME, tRNA modification 99.5 5.4E-14 1.8E-18 117.8 8.5 98 1-104 283-388 (476)
135 4dhe_A Probable GTP-binding pr 99.5 5.2E-14 1.8E-18 105.5 6.8 100 1-104 81-201 (223)
136 2ged_A SR-beta, signal recogni 99.5 1.6E-13 5.4E-18 100.6 9.3 68 1-68 93-170 (193)
137 1jny_A EF-1-alpha, elongation 99.5 2.8E-14 9.5E-19 118.3 5.6 103 1-104 86-203 (435)
138 3qq5_A Small GTP-binding prote 99.5 6.2E-14 2.1E-18 115.8 7.7 95 1-104 85-186 (423)
139 1lnz_A SPO0B-associated GTP-bi 99.5 9.6E-14 3.3E-18 111.8 7.4 99 1-104 208-320 (342)
140 3cb4_D GTP-binding protein LEP 99.5 2.1E-13 7.1E-18 117.0 9.7 98 1-104 73-172 (599)
141 2ywe_A GTP-binding protein LEP 99.5 3.5E-13 1.2E-17 115.6 10.9 98 1-104 75-174 (600)
142 3i8s_A Ferrous iron transport 99.4 4.2E-14 1.4E-18 110.5 4.4 97 1-105 52-160 (274)
143 3k53_A Ferrous iron transport 99.4 1.1E-13 3.7E-18 107.7 6.0 99 1-106 52-158 (271)
144 1xzp_A Probable tRNA modificat 99.4 6.1E-12 2.1E-16 105.5 16.4 94 1-104 293-395 (482)
145 3sjy_A Translation initiation 99.4 4E-13 1.4E-17 110.2 8.5 102 1-104 77-182 (403)
146 1r5b_A Eukaryotic peptide chai 99.4 1.3E-13 4.4E-18 115.3 5.6 104 1-104 123-242 (467)
147 1g7s_A Translation initiation 99.4 1.8E-12 6E-17 111.3 11.7 62 1-68 72-136 (594)
148 3p26_A Elongation factor 1 alp 99.4 4.3E-13 1.5E-17 112.5 7.6 103 1-104 113-228 (483)
149 1mky_A Probable GTP-binding pr 99.4 6.4E-13 2.2E-17 110.1 8.2 94 1-104 51-156 (439)
150 3l82_B F-box only protein 4; T 99.4 8.5E-13 2.9E-17 99.2 8.0 99 5-107 108-217 (227)
151 1s0u_A EIF-2-gamma, translatio 99.4 2.1E-12 7.2E-17 106.1 10.5 99 1-104 83-188 (408)
152 1zun_B Sulfate adenylate trans 99.4 1.2E-12 4.2E-17 108.3 8.9 101 1-104 106-214 (434)
153 1f60_A Elongation factor EEF1A 99.4 5.6E-13 1.9E-17 111.2 6.7 102 1-104 87-202 (458)
154 3izy_P Translation initiation 99.4 3.1E-13 1.1E-17 114.6 4.4 101 1-104 54-158 (537)
155 3j2k_7 ERF3, eukaryotic polype 99.4 6.1E-13 2.1E-17 110.4 5.7 102 1-104 97-215 (439)
156 2hjg_A GTP-binding protein ENG 99.3 7.9E-13 2.7E-17 109.5 5.8 95 1-104 53-155 (436)
157 2c78_A Elongation factor TU-A; 99.3 1.6E-12 5.5E-17 106.6 6.5 98 1-102 77-182 (405)
158 1zo1_I IF2, translation initia 99.3 7.8E-13 2.7E-17 111.3 4.6 98 1-104 53-157 (501)
159 2aka_B Dynamin-1; fusion prote 99.3 4.7E-12 1.6E-16 99.0 8.4 102 1-105 127-244 (299)
160 2elf_A Protein translation elo 99.3 3.9E-12 1.3E-16 103.4 8.0 98 1-104 62-170 (370)
161 1wb1_A Translation elongation 99.3 3.4E-12 1.2E-16 107.1 7.6 97 1-104 75-179 (482)
162 3izq_1 HBS1P, elongation facto 99.3 2E-12 6.8E-17 111.3 5.9 103 1-104 247-362 (611)
163 3l2o_B F-box only protein 4; s 99.3 3.1E-12 1.1E-16 100.3 6.4 100 5-108 193-303 (312)
164 3tr5_A RF-3, peptide chain rel 99.3 1.6E-11 5.5E-16 104.0 11.1 65 1-68 84-148 (528)
165 1d2e_A Elongation factor TU (E 99.3 4.3E-12 1.5E-16 103.9 7.0 97 1-100 68-171 (397)
166 3geh_A MNME, tRNA modification 99.3 5.7E-12 2E-16 105.2 7.5 93 1-104 274-374 (462)
167 1ega_A Protein (GTP-binding pr 99.3 1E-11 3.5E-16 98.2 8.4 99 1-104 58-165 (301)
168 1kk1_A EIF2gamma; initiation o 99.3 9.7E-12 3.3E-16 102.2 8.0 98 1-104 85-190 (410)
169 2qag_A Septin-2, protein NEDD5 99.2 9.5E-13 3.2E-17 106.7 0.9 98 1-104 97-223 (361)
170 2xtp_A GTPase IMAP family memb 99.2 3.6E-11 1.2E-15 92.5 9.7 103 1-105 73-199 (260)
171 2qtf_A Protein HFLX, GTP-bindi 99.2 5.7E-11 2E-15 96.4 10.7 101 1-104 228-344 (364)
172 3avx_A Elongation factor TS, e 99.2 2.3E-11 7.9E-16 110.2 8.3 95 1-99 361-463 (1289)
173 1mky_A Probable GTP-binding pr 99.2 1.1E-10 3.9E-15 96.6 11.1 101 1-105 230-346 (439)
174 3lxx_A GTPase IMAP family memb 99.2 4.9E-11 1.7E-15 90.7 7.0 93 1-97 80-192 (239)
175 2j69_A Bacterial dynamin-like 99.2 1.5E-10 5.3E-15 100.9 10.5 66 1-68 176-244 (695)
176 4dcu_A GTP-binding protein ENG 99.1 7E-11 2.4E-15 98.3 6.8 95 1-104 73-175 (456)
177 3mca_A HBS1, elongation factor 99.1 1.8E-11 6.2E-16 105.0 2.3 96 1-103 257-372 (592)
178 3t34_A Dynamin-related protein 99.1 7.4E-11 2.5E-15 95.2 4.3 100 1-104 138-251 (360)
179 2h5e_A Peptide chain release f 99.1 2.5E-10 8.7E-15 96.7 7.7 98 1-104 84-185 (529)
180 3h2y_A GTPase family protein; 99.1 4E-10 1.4E-14 91.5 8.1 90 8-104 55-150 (368)
181 3def_A T7I23.11 protein; chlor 99.0 3.5E-10 1.2E-14 87.4 6.5 74 1-76 86-172 (262)
182 1pui_A ENGB, probable GTP-bind 99.0 1.4E-09 4.8E-14 80.4 8.3 98 2-104 75-189 (210)
183 2dy1_A Elongation factor G; tr 99.0 1.7E-09 5.7E-14 94.0 9.6 64 1-67 76-139 (665)
184 1jwy_B Dynamin A GTPase domain 99.0 1.4E-09 4.8E-14 85.6 7.9 97 1-101 133-243 (315)
185 1n0u_A EF-2, elongation factor 98.9 6.6E-10 2.2E-14 98.8 5.0 74 1-77 100-173 (842)
186 3lxw_A GTPase IMAP family memb 98.9 3.9E-09 1.3E-13 81.0 8.3 89 1-90 72-180 (247)
187 3ec1_A YQEH GTPase; atnos1, at 98.9 2.1E-09 7.2E-14 87.2 6.7 90 8-104 57-152 (369)
188 2xex_A Elongation factor G; GT 98.9 1.8E-09 6E-14 94.2 6.1 65 1-68 77-141 (693)
189 2x2e_A Dynamin-1; nitration, h 98.9 1.4E-09 4.6E-14 87.7 4.8 102 1-105 132-249 (353)
190 1udx_A The GTP-binding protein 98.9 1.2E-08 4.1E-13 84.0 9.9 99 1-104 207-315 (416)
191 1h65_A Chloroplast outer envel 98.9 5.2E-09 1.8E-13 81.1 7.2 73 1-75 89-174 (270)
192 1dar_A EF-G, elongation factor 98.8 1.9E-09 6.4E-14 94.0 5.0 65 1-68 79-143 (691)
193 3t5d_A Septin-7; GTP-binding p 98.8 2.2E-09 7.6E-14 83.4 4.1 99 1-104 67-194 (274)
194 1yrb_A ATP(GTP)binding protein 98.8 8.3E-09 2.8E-13 79.0 7.1 99 1-104 111-247 (262)
195 2qnr_A Septin-2, protein NEDD5 98.8 7.8E-10 2.7E-14 87.4 1.1 98 1-104 78-204 (301)
196 2rdo_7 EF-G, elongation factor 98.7 2.1E-08 7.1E-13 87.6 8.2 65 1-68 84-148 (704)
197 2wsm_A Hydrogenase expression/ 98.7 1.2E-08 4E-13 76.1 5.0 91 2-104 112-204 (221)
198 2p67_A LAO/AO transport system 98.7 5.9E-08 2E-12 77.8 9.0 94 1-105 151-252 (341)
199 3p32_A Probable GTPase RV1496/ 98.7 5.9E-08 2E-12 78.2 8.0 92 1-104 174-274 (355)
200 2qag_C Septin-7; cell cycle, c 98.7 1E-08 3.6E-13 84.5 3.4 99 1-104 90-217 (418)
201 1wxq_A GTP-binding protein; st 98.6 4E-08 1.4E-12 80.5 5.3 35 1-35 73-114 (397)
202 2qpt_A EH domain-containing pr 98.6 2E-08 6.9E-13 85.4 3.4 66 1-68 156-232 (550)
203 2www_A Methylmalonic aciduria 98.3 1.4E-05 4.6E-10 64.3 13.8 92 2-105 170-270 (349)
204 1puj_A YLQF, conserved hypothe 98.3 1.1E-06 3.9E-11 68.6 7.2 88 3-104 3-96 (282)
205 2hf9_A Probable hydrogenase ni 98.3 1.4E-09 5E-14 81.4 -9.4 51 54-105 164-215 (226)
206 1jal_A YCHF protein; nucleotid 98.3 2.9E-06 1E-10 68.6 9.0 48 53-102 198-245 (363)
207 2dby_A GTP-binding protein; GD 98.1 5.5E-06 1.9E-10 67.1 7.7 50 54-104 201-252 (368)
208 3zvr_A Dynamin-1; hydrolase, D 98.1 9.8E-06 3.4E-10 71.2 8.9 99 1-104 152-268 (772)
209 3vqt_A RF-3, peptide chain rel 98.0 1.2E-05 4.1E-10 68.3 7.3 65 1-68 102-166 (548)
210 2qm8_A GTPase/ATPase; G protei 97.9 0.00011 3.8E-09 58.6 11.7 93 2-105 151-252 (337)
211 4fn5_A EF-G 1, elongation fact 97.8 2.7E-05 9.2E-10 68.1 6.3 65 1-68 87-151 (709)
212 3j25_A Tetracycline resistance 97.8 1.7E-05 5.7E-10 68.6 4.5 65 1-68 69-133 (638)
213 3cnl_A YLQF, putative uncharac 97.7 2.4E-05 8.2E-10 60.4 3.6 84 7-104 5-91 (262)
214 1t9h_A YLOQ, probable GTPase E 97.5 0.00019 6.4E-09 56.7 6.0 86 14-104 78-167 (307)
215 2rcn_A Probable GTPase ENGC; Y 97.0 0.0028 9.4E-08 51.1 8.6 78 20-104 128-209 (358)
216 2ohf_A Protein OLA1, GTP-bindi 96.7 0.00055 1.9E-08 55.9 2.0 39 1-39 88-133 (396)
217 4a9a_A Ribosome-interacting GT 96.1 0.0076 2.6E-07 48.8 5.2 87 1-87 121-222 (376)
218 3dyt_A Sorting nexin-9; 3-heli 96.0 0.04 1.4E-06 44.3 9.2 60 109-168 306-365 (366)
219 4akv_A Sorting nexin-33; trans 95.5 0.09 3.1E-06 42.6 9.4 59 109-167 326-384 (386)
220 4dzz_A Plasmid partitioning pr 94.9 0.068 2.3E-06 38.4 6.4 81 2-90 79-162 (206)
221 3k9g_A PF-32 protein; ssgcid, 93.1 0.63 2.2E-05 34.9 8.9 61 2-65 148-208 (267)
222 3cwq_A Para family chromosome 91.7 1.1 3.7E-05 32.5 8.4 81 2-89 71-152 (209)
223 2j37_W Signal recognition part 91.7 0.16 5.4E-06 42.6 4.2 61 2-68 187-254 (504)
224 3ea0_A ATPase, para family; al 90.5 1.9 6.5E-05 31.5 8.9 81 2-91 122-203 (245)
225 3end_A Light-independent proto 90.4 2.7 9.2E-05 32.1 10.0 80 2-91 160-242 (307)
226 1j8m_F SRP54, signal recogniti 89.8 2 6.8E-05 33.2 8.7 88 2-103 184-280 (297)
227 1wcv_1 SOJ, segregation protei 88.3 1.9 6.6E-05 32.0 7.5 81 2-88 115-200 (257)
228 3dm5_A SRP54, signal recogniti 87.4 3.4 0.00012 34.0 8.9 90 2-104 186-281 (443)
229 2ph1_A Nucleotide-binding prot 86.4 1.8 6.2E-05 32.3 6.4 86 2-90 132-223 (262)
230 1bif_A 6-phosphofructo-2-kinas 84.2 0.79 2.7E-05 37.7 3.6 82 2-84 90-194 (469)
231 3q9l_A Septum site-determining 83.0 2.5 8.7E-05 31.1 5.8 62 2-66 117-185 (260)
232 2v3c_C SRP54, signal recogniti 83.0 4.5 0.00015 33.0 7.7 78 2-90 184-269 (432)
233 2oze_A ORF delta'; para, walke 83.0 3.5 0.00012 31.2 6.7 80 2-87 158-242 (298)
234 1g3q_A MIND ATPase, cell divis 83.0 6.7 0.00023 28.3 8.0 80 2-90 115-194 (237)
235 3kjh_A CO dehydrogenase/acetyl 82.9 3.6 0.00012 29.8 6.6 60 2-65 135-194 (254)
236 1hyq_A MIND, cell division inh 82.2 6.4 0.00022 29.0 7.8 80 2-90 114-193 (263)
237 1ni3_A YCHF GTPase, YCHF GTP-b 80.3 0.99 3.4E-05 36.5 2.8 34 1-34 87-127 (392)
238 2xj4_A MIPZ; replication, cell 78.4 4.2 0.00014 30.8 5.7 62 2-66 107-190 (286)
239 1cp2_A CP2, nitrogenase iron p 78.4 18 0.0006 26.6 9.9 83 2-90 119-205 (269)
240 2afh_E Nitrogenase iron protei 74.1 25 0.00086 26.2 9.5 83 2-90 122-208 (289)
241 3ec1_A YQEH GTPase; atnos1, at 69.7 0.27 9.4E-06 39.3 -3.2 83 1-88 214-306 (369)
242 3kl4_A SRP54, signal recogniti 68.7 19 0.00064 29.4 7.5 88 2-102 183-278 (433)
243 1byi_A Dethiobiotin synthase; 65.6 27 0.00094 24.7 7.4 83 2-90 112-200 (224)
244 3bfv_A CAPA1, CAPB2, membrane 63.7 12 0.00042 28.1 5.3 63 2-68 195-258 (271)
245 3ez9_A Para; DNA binding, wing 61.2 16 0.00054 29.0 5.7 81 2-89 251-341 (403)
246 3fwy_A Light-independent proto 59.4 58 0.002 25.0 10.4 79 3-91 168-249 (314)
247 3la6_A Tyrosine-protein kinase 58.3 27 0.00091 26.5 6.4 63 2-68 205-268 (286)
248 3ezx_A MMCP 1, monomethylamine 52.4 32 0.0011 25.0 5.7 57 21-90 142-200 (215)
249 2pd2_A Hypothetical protein ST 52.2 34 0.0012 21.5 5.3 35 28-62 3-37 (108)
250 2xxa_A Signal recognition part 48.8 26 0.00089 28.5 5.1 77 2-89 187-270 (433)
251 3sop_A Neuronal-specific septi 47.9 45 0.0016 25.0 6.1 43 22-68 111-154 (270)
252 2yxb_A Coenzyme B12-dependent 46.3 69 0.0024 22.0 6.8 58 21-91 68-126 (161)
253 3u7r_A NADPH-dependent FMN red 46.2 16 0.00056 26.1 3.2 69 17-87 62-135 (190)
254 3ez2_A Plasmid partition prote 43.2 30 0.001 27.3 4.7 30 2-33 248-277 (398)
255 3cio_A ETK, tyrosine-protein k 42.6 49 0.0017 25.1 5.6 63 2-68 217-280 (299)
256 2qag_B Septin-6, protein NEDD5 42.4 59 0.002 26.4 6.2 40 25-68 151-190 (427)
257 2fz5_A Flavodoxin; alpha/beta 40.9 27 0.00094 22.5 3.5 68 19-90 43-112 (137)
258 1tq4_A IIGP1, interferon-induc 38.6 1.5E+02 0.0052 23.8 10.4 58 2-66 123-187 (413)
259 3szr_A Interferon-induced GTP- 38.2 16 0.00055 31.0 2.4 54 13-68 174-228 (608)
260 4a9a_A Ribosome-interacting GT 37.5 59 0.002 25.9 5.5 42 53-103 248-289 (376)
261 4hs4_A Chromate reductase; tri 37.4 32 0.0011 24.5 3.6 67 19-87 70-140 (199)
262 3fkq_A NTRC-like two-domain pr 34.5 43 0.0015 26.2 4.2 60 2-64 263-322 (373)
263 1ls1_A Signal recognition part 34.0 81 0.0028 23.9 5.6 81 2-93 184-271 (295)
264 2wkj_A N-acetylneuraminate lya 33.2 53 0.0018 25.1 4.5 40 21-60 105-144 (303)
265 3d0c_A Dihydrodipicolinate syn 33.1 1.1E+02 0.0037 23.5 6.3 59 21-87 105-163 (314)
266 3do6_A Formate--tetrahydrofola 32.6 1E+02 0.0035 25.8 6.2 60 38-103 346-407 (543)
267 2cly_A ATP synthase B chain, m 32.5 72 0.0025 23.4 4.8 16 153-168 188-203 (214)
268 4dad_A Putative pilus assembly 32.1 98 0.0034 19.6 5.4 58 21-92 66-123 (146)
269 3eb2_A Putative dihydrodipicol 31.7 1.7E+02 0.0058 22.2 8.4 68 21-92 98-165 (300)
270 3f6c_A Positive transcription 31.5 77 0.0026 19.7 4.5 58 22-93 46-103 (134)
271 1y80_A Predicted cobalamin bin 31.0 67 0.0023 22.8 4.5 55 21-90 138-194 (210)
272 3svl_A Protein YIEF; E. coli C 30.6 61 0.0021 22.9 4.1 69 18-88 68-140 (193)
273 1t0i_A YLR011WP; FMN binding p 30.4 39 0.0013 23.4 3.0 68 18-89 80-147 (191)
274 1ccw_A Protein (glutamate muta 30.3 1.2E+02 0.0041 20.0 6.9 65 21-92 53-118 (137)
275 3k1y_A Oxidoreductase; structu 29.9 37 0.0013 24.1 2.9 68 18-88 81-150 (191)
276 3jte_A Response regulator rece 29.7 1.1E+02 0.0036 19.3 7.9 58 22-93 49-106 (143)
277 1zu4_A FTSY; GTPase, signal re 29.4 1.9E+02 0.0065 22.1 7.4 88 2-103 195-295 (320)
278 3hv2_A Response regulator/HD d 28.8 1.1E+02 0.0038 19.6 5.0 40 22-65 58-97 (153)
279 2ark_A Flavodoxin; FMN, struct 28.7 51 0.0018 22.8 3.4 47 19-65 49-99 (188)
280 3pzx_A Formate--tetrahydrofola 28.6 80 0.0028 26.6 4.9 60 38-103 360-419 (557)
281 3p7m_A Malate dehydrogenase; p 28.5 49 0.0017 25.6 3.5 49 18-66 69-127 (321)
282 3b4u_A Dihydrodipicolinate syn 28.5 58 0.002 24.8 3.9 60 21-83 97-159 (294)
283 3eqz_A Response regulator; str 28.4 1E+02 0.0034 19.1 4.7 39 23-65 47-85 (135)
284 1rtt_A Conserved hypothetical 28.4 28 0.00095 24.3 1.9 67 19-87 69-139 (193)
285 1zpw_X Hypothetical protein TT 28.3 65 0.0022 19.9 3.5 20 25-44 5-24 (90)
286 2hmc_A AGR_L_411P, dihydrodipi 28.1 1.9E+02 0.0065 22.5 6.9 69 21-93 117-187 (344)
287 1rli_A Trp repressor binding p 27.6 59 0.002 22.1 3.6 71 19-89 68-150 (184)
288 2a5l_A Trp repressor binding p 27.3 1.5E+02 0.0052 20.2 7.1 71 17-88 66-141 (200)
289 2vzf_A NADH-dependent FMN redu 27.3 28 0.00096 24.5 1.8 68 19-89 66-135 (197)
290 2rjn_A Response regulator rece 27.2 89 0.003 20.1 4.3 40 22-65 51-90 (154)
291 1oju_A MDH, malate dehydrogena 27.1 50 0.0017 25.3 3.3 50 17-66 64-123 (294)
292 3exc_X Uncharacterized protein 26.5 78 0.0027 19.7 3.6 17 25-41 5-21 (91)
293 2i2x_B MTAC, methyltransferase 26.5 74 0.0025 23.6 4.1 42 21-64 173-214 (258)
294 5nul_A Flavodoxin; electron tr 26.1 73 0.0025 20.6 3.7 65 19-87 42-108 (138)
295 3gfs_A FMN-dependent NADPH-azo 25.9 25 0.00084 24.2 1.3 68 19-88 60-128 (174)
296 2rdm_A Response regulator rece 25.6 1.2E+02 0.0042 18.6 5.0 41 22-66 50-91 (132)
297 3m5v_A DHDPS, dihydrodipicolin 25.4 1E+02 0.0034 23.5 4.8 69 21-93 102-171 (301)
298 3qze_A DHDPS, dihydrodipicolin 25.3 1E+02 0.0035 23.7 4.9 59 21-83 117-175 (314)
299 3tak_A DHDPS, dihydrodipicolin 25.3 1E+02 0.0036 23.3 4.8 59 21-83 95-153 (291)
300 1uoz_A Putative cellulase; hyd 25.0 1E+02 0.0035 24.0 4.7 40 22-61 89-138 (315)
301 3i42_A Response regulator rece 24.9 1.2E+02 0.0042 18.5 5.1 41 22-66 47-89 (127)
302 2ffh_A Protein (FFH); SRP54, s 24.8 79 0.0027 25.6 4.2 81 2-93 184-271 (425)
303 3hdg_A Uncharacterized protein 24.8 89 0.003 19.5 3.9 56 22-91 51-106 (137)
304 2ehh_A DHDPS, dihydrodipicolin 24.5 1.1E+02 0.0038 23.2 4.8 58 21-82 94-151 (294)
305 2vc6_A MOSA, dihydrodipicolina 24.4 1.1E+02 0.0037 23.2 4.8 59 21-83 94-152 (292)
306 2yxg_A DHDPS, dihydrodipicolin 24.3 1.1E+02 0.0037 23.1 4.8 59 21-83 94-152 (289)
307 3flu_A DHDPS, dihydrodipicolin 24.1 1.1E+02 0.0038 23.2 4.8 58 21-82 101-158 (297)
308 1xky_A Dihydrodipicolinate syn 24.1 1.1E+02 0.0037 23.3 4.8 59 21-83 106-164 (301)
309 1w3i_A EDA, 2-keto-3-deoxy glu 24.1 1.2E+02 0.004 23.0 4.9 39 21-60 90-129 (293)
310 3l21_A DHDPS, dihydrodipicolin 24.0 98 0.0034 23.6 4.5 59 21-83 109-167 (304)
311 3si9_A DHDPS, dihydrodipicolin 24.0 1.1E+02 0.0038 23.5 4.8 61 21-85 116-176 (315)
312 3nep_X Malate dehydrogenase; h 23.8 59 0.002 25.1 3.2 49 18-66 65-123 (314)
313 3daq_A DHDPS, dihydrodipicolin 23.7 96 0.0033 23.5 4.4 59 21-83 96-154 (292)
314 3cg4_A Response regulator rece 23.7 1.3E+02 0.0045 18.7 4.6 42 22-67 51-94 (142)
315 3cpr_A Dihydrodipicolinate syn 23.4 1.2E+02 0.004 23.2 4.8 39 21-60 110-148 (304)
316 2ewd_A Lactate dehydrogenase,; 23.3 1.1E+02 0.0038 23.2 4.7 48 19-66 69-126 (317)
317 2kpo_A Rossmann 2X2 fold prote 23.3 88 0.003 19.2 3.2 21 39-59 36-56 (110)
318 3fvw_A Putative NAD(P)H-depend 22.9 63 0.0021 22.7 3.0 69 17-88 62-141 (192)
319 3b2n_A Uncharacterized protein 22.8 1.3E+02 0.0045 18.7 4.4 57 22-92 49-105 (133)
320 2px0_A Flagellar biosynthesis 22.8 2.2E+02 0.0074 21.5 6.2 87 2-101 186-278 (296)
321 2ivy_A Hypothetical protein SS 22.8 79 0.0027 20.0 3.2 20 25-44 4-23 (101)
322 3tl2_A Malate dehydrogenase; c 22.7 74 0.0025 24.5 3.5 49 18-66 74-132 (315)
323 2v6b_A L-LDH, L-lactate dehydr 22.4 97 0.0033 23.5 4.2 48 19-66 64-121 (304)
324 2d4a_B Malate dehydrogenase; a 22.3 1.2E+02 0.0041 23.1 4.7 48 19-66 64-121 (308)
325 3qk7_A Transcriptional regulat 22.3 89 0.003 22.9 3.9 37 21-66 64-100 (294)
326 3hzh_A Chemotaxis response reg 22.2 1.6E+02 0.0056 18.9 6.8 57 22-92 83-139 (157)
327 2qsj_A DNA-binding response re 22.2 88 0.003 20.1 3.5 40 22-65 50-89 (154)
328 3hhp_A Malate dehydrogenase; M 22.2 67 0.0023 24.8 3.2 49 18-66 65-123 (312)
329 3dci_A Arylesterase; SGNH_hydr 22.2 1.9E+02 0.0064 20.3 5.6 66 23-89 102-193 (232)
330 1o5k_A DHDPS, dihydrodipicolin 22.1 1.2E+02 0.004 23.2 4.6 69 21-93 106-175 (306)
331 2yvt_A Hypothetical protein AQ 22.1 1.8E+02 0.0062 20.6 5.6 17 21-37 31-47 (260)
332 3pg5_A Uncharacterized protein 22.0 1.6E+02 0.0055 22.8 5.5 39 2-43 157-195 (361)
333 3gv0_A Transcriptional regulat 21.8 1.1E+02 0.0037 22.3 4.3 37 21-66 65-101 (288)
334 2ojp_A DHDPS, dihydrodipicolin 21.7 1.2E+02 0.0041 22.9 4.6 38 21-59 95-132 (292)
335 1xrs_B D-lysine 5,6-aminomutas 21.2 2.3E+02 0.008 21.2 6.0 59 21-92 179-240 (262)
336 3eod_A Protein HNR; response r 21.1 1.5E+02 0.0052 18.1 7.0 58 22-93 51-108 (130)
337 4e7p_A Response regulator; DNA 21.1 1.7E+02 0.0058 18.6 7.2 58 22-93 66-123 (150)
338 2v9d_A YAGE; dihydrodipicolini 20.9 1.3E+02 0.0045 23.4 4.7 58 21-82 125-182 (343)
339 1l1s_A Hypothetical protein MT 20.9 1.6E+02 0.0056 18.4 5.3 37 26-62 6-42 (113)
340 3eul_A Possible nitrate/nitrit 20.6 1.7E+02 0.0059 18.5 7.5 57 22-92 61-117 (152)
341 3gvi_A Malate dehydrogenase; N 20.6 91 0.0031 24.1 3.7 49 18-66 71-129 (324)
342 2r91_A 2-keto-3-deoxy-(6-phosp 20.6 1.2E+02 0.004 22.9 4.3 39 21-60 89-128 (286)
343 2rfg_A Dihydrodipicolinate syn 20.5 1.2E+02 0.004 23.1 4.2 38 21-59 94-131 (297)
344 1ldn_A L-lactate dehydrogenase 20.3 1.3E+02 0.0046 22.9 4.6 49 18-66 70-128 (316)
345 2nuw_A 2-keto-3-deoxygluconate 20.3 1.2E+02 0.0041 22.9 4.3 39 21-60 90-129 (288)
346 2zki_A 199AA long hypothetical 20.2 2.1E+02 0.0073 19.5 7.0 69 19-88 67-140 (199)
347 3e96_A Dihydrodipicolinate syn 20.2 2.5E+02 0.0085 21.4 6.1 54 21-82 105-158 (316)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.96 E-value=3.3e-29 Score=190.50 Aligned_cols=103 Identities=29% Similarity=0.416 Sum_probs=97.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
|+||||+||++|..+++.||++++++++|||+++++||+.+..|+..+.... +++|+||||||+|+.+ .|.|+.+++.
T Consensus 64 l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~-~r~V~~~e~~ 142 (216)
T 4dkx_A 64 LQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGE 142 (216)
T ss_dssp EEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred EEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh-cCcccHHHHh
Confidence 5799999999999999999999999999999999999999999999998776 7899999999999998 8999999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
++|++++++ |++|||++|.||+++|
T Consensus 143 ~~a~~~~~~-~~e~SAktg~nV~e~F 167 (216)
T 4dkx_A 143 RKAKELNVM-FIETSAKAGYNVKQLF 167 (216)
T ss_dssp HHHHHHTCE-EEEEBTTTTBSHHHHH
T ss_pred hHHHHhCCe-eEEEeCCCCcCHHHHH
Confidence 999999985 7899999999999873
No 2
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.91 E-value=2.3e-23 Score=152.32 Aligned_cols=102 Identities=28% Similarity=0.455 Sum_probs=81.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus 59 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~ 137 (183)
T 2fu5_C 59 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGE 137 (183)
T ss_dssp EEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS-CCCSCHHHHH
T ss_pred EEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc-cCcCCHHHHH
Confidence 4799999999999999999999999999999999999999999999998875 6899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++.+++ .|+++||++|.||+++
T Consensus 138 ~~~~~~~~-~~~~~Sa~~~~~i~~l 161 (183)
T 2fu5_C 138 KLALDYGI-KFMETSAKANINVENA 161 (183)
T ss_dssp HHHHHHTC-EEEECCC---CCHHHH
T ss_pred HHHHHcCC-eEEEEeCCCCCCHHHH
Confidence 99999998 4778999999999976
No 3
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=156.28 Aligned_cols=103 Identities=32% Similarity=0.488 Sum_probs=96.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus 80 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~ 158 (201)
T 2hup_A 80 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE-LREVSLAEAQ 158 (201)
T ss_dssp EEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999998876 7899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++++..++..|+++||+++.||+++
T Consensus 159 ~~~~~~~~~~~~~~SA~~g~gi~~l 183 (201)
T 2hup_A 159 SLAEHYDILCAIETSAKDSSNVEEA 183 (201)
T ss_dssp HHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred HHHHHcCCCEEEEEeCCCCCCHHHH
Confidence 9999999867889999999999976
No 4
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.90 E-value=1.5e-23 Score=158.14 Aligned_cols=104 Identities=17% Similarity=0.344 Sum_probs=96.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHV-LSQHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~-~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
++||||+|++.|..++..+++++|++|+|||++++.||+. +..|+..+....+++|++|||||+|+.++
T Consensus 77 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 156 (214)
T 3q3j_B 77 LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQ 156 (214)
T ss_dssp EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHT
T ss_pred EEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhccc
Confidence 4799999999999999999999999999999999999999 68999999988889999999999999752
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcch-hhhH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQE-VVEA 104 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~-v~~~ 104 (170)
.+.++.+++..+++.+++..|+++||++|.| |+++
T Consensus 157 ~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~l 193 (214)
T 3q3j_B 157 KQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193 (214)
T ss_dssp TCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHH
T ss_pred ccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHH
Confidence 3789999999999999997788999999998 9976
No 5
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.90 E-value=4.3e-23 Score=152.58 Aligned_cols=104 Identities=25% Similarity=0.417 Sum_probs=96.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC-CCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT-TPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~-~~~v~~~~~ 78 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+ ..|+..+....+++|++|||||+|+.++ .+.++.+++
T Consensus 73 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 152 (194)
T 3reg_A 73 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEG 152 (194)
T ss_dssp EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHH
T ss_pred EEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHH
Confidence 47999999999999999999999999999999999999997 7899998887789999999999999752 478999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.++++.|+++||++|.||+++
T Consensus 153 ~~~~~~~~~~~~~~~Sa~~~~gi~~l 178 (194)
T 3reg_A 153 DDLCQKLGCVAYIEASSVAKIGLNEV 178 (194)
T ss_dssp HHHHHHHTCSCEEECBTTTTBSHHHH
T ss_pred HHHHHhcCCCEEEEeecCCCCCHHHH
Confidence 99999999987889999999999976
No 6
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=6.1e-23 Score=151.62 Aligned_cols=104 Identities=19% Similarity=0.323 Sum_probs=95.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
++||||||+++|..++..+++++|++|+|||++++.||+.+. .|+..+....+++|++|||||+|+.++
T Consensus 68 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 147 (194)
T 2atx_A 68 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDM 147 (194)
T ss_dssp EEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTT
T ss_pred EEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccc
Confidence 479999999999999999999999999999999999999997 899999888789999999999999762
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.++.+++.++++.+++..|+++||++|.||+++
T Consensus 148 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 183 (194)
T 2atx_A 148 KEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV 183 (194)
T ss_dssp TCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHH
T ss_pred cCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHH
Confidence 25789999999999999867889999999999976
No 7
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.90 E-value=3.9e-23 Score=151.79 Aligned_cols=104 Identities=20% Similarity=0.347 Sum_probs=94.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+ ..|+..+....+++|++|||||+|+.++
T Consensus 57 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 136 (184)
T 1m7b_A 57 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNH 136 (184)
T ss_dssp EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTT
T ss_pred EEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhc
Confidence 47999999999999999999999999999999999999999 7899999887789999999999999741
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccC-CcchhhhH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVV-EPQEVVEA 104 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~-~~~~v~~~ 104 (170)
.+.++.+++.++++.++...|+++||+ ++.||+++
T Consensus 137 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l 173 (184)
T 1m7b_A 137 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 173 (184)
T ss_dssp TCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHH
Confidence 267999999999999997678899999 68999976
No 8
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.89 E-value=3.4e-23 Score=152.43 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=91.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCC------ChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLD------NAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t------~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~ 74 (170)
++||||||++.|..+++.+++++|++|+|||++ +.++|+.+..|+.++....+++|++|||||+|+.+ .++
T Consensus 76 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~---~~~ 152 (198)
T 3t1o_A 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD---ALP 152 (198)
T ss_dssp EEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT---CCC
T ss_pred EEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc---ccC
Confidence 479999999999999999999999999999999 66888899999988854458999999999999976 589
Q ss_pred HHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 75 EADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 75 ~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++.++++.+++..|+++||++|.||+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 182 (198)
T 3t1o_A 153 VEMVRAVVDPEGKFPVLEAVATEGKGVFET 182 (198)
T ss_dssp HHHHHHHHCTTCCSCEEECBGGGTBTHHHH
T ss_pred HHHHHHHHHhcCCceEEEEecCCCcCHHHH
Confidence 999999999999856789999999999976
No 9
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.89 E-value=1.3e-22 Score=147.92 Aligned_cols=102 Identities=24% Similarity=0.304 Sum_probs=93.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++
T Consensus 56 ~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~ 134 (181)
T 3t5g_A 56 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEG 134 (181)
T ss_dssp EEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT-TCCSCHHHH
T ss_pred EEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cceecHHHH
Confidence 4799999999999999999999999999999999999999999999987775 5899999999999988 889999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.++++ |+++||++|.||++.
T Consensus 135 ~~~~~~~~~~-~~~~Sa~~~~~v~~l 159 (181)
T 3t5g_A 135 KALAESWNAA-FLESSAKENQTAVDV 159 (181)
T ss_dssp HHHHHHTTCE-EEECCTTSHHHHHHH
T ss_pred HHHHHHhCCc-EEEEecCCCCCHHHH
Confidence 9999999985 778999999999976
No 10
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.89 E-value=1.2e-22 Score=145.86 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=79.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||+|++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ .+.++.+++
T Consensus 51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~ 129 (166)
T 3q72_A 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVDEG 129 (166)
T ss_dssp EEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS-SCCSCHHHH
T ss_pred EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc-ccccCHHHH
Confidence 4799999999999999999999999999999999999999999999988764 6899999999999988 789999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..++...++ .|+++||++|.|+++.
T Consensus 130 ~~~~~~~~~-~~~~~Sa~~~~gi~~l 154 (166)
T 3q72_A 130 RACAVVFDC-KFIETSAALHHNVQAL 154 (166)
T ss_dssp HHHHHHTTC-EEEECBGGGTBSHHHH
T ss_pred HHHHHHhCC-cEEEeccCCCCCHHHH
Confidence 999999997 5778999999999976
No 11
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.89 E-value=1.3e-22 Score=149.74 Aligned_cols=102 Identities=35% Similarity=0.502 Sum_probs=94.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus 72 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~ 150 (191)
T 2a5j_A 72 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-RRDVKREEGE 150 (191)
T ss_dssp EEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred EEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999998775 7899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++.+++ .|+++||+++.||+++
T Consensus 151 ~~~~~~~~-~~~~~Sa~~~~gi~~l 174 (191)
T 2a5j_A 151 AFAREHGL-IFMETSAKTACNVEEA 174 (191)
T ss_dssp HHHHHHTC-EEEEECTTTCTTHHHH
T ss_pred HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 99999998 5778999999999976
No 12
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=151.46 Aligned_cols=102 Identities=19% Similarity=0.272 Sum_probs=93.2
Q ss_pred CeEEecCCcccccc-chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVAS-ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~-~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+++|||+|++.+.. ++..|++++|++|+|||++++.||+.+..|+..+.... .++|++|||||+|+.+ .+.++.++
T Consensus 74 l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~ 152 (195)
T 3cbq_A 74 LVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEE 152 (195)
T ss_dssp EEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT-TCCSCHHH
T ss_pred EEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc-cCCcCHHH
Confidence 46899999998865 88999999999999999999999999999999988765 5899999999999987 78899999
Q ss_pred HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+..+++.+++ .|+++||+++.||+++
T Consensus 153 ~~~~a~~~~~-~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 153 GRHLAGTLSC-KHIETSAALHHNTREL 178 (195)
T ss_dssp HHHHHHHTTC-EEEEEBTTTTBSHHHH
T ss_pred HHHHHHHhCC-EEEEEcCCCCCCHHHH
Confidence 9999999987 5779999999999976
No 13
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.8e-22 Score=145.61 Aligned_cols=102 Identities=30% Similarity=0.435 Sum_probs=95.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
+.||||||++.+..++..+++++|++++|||++++.||..+..|+..+....+++|+++||||+|+.+ .+.++.+++..
T Consensus 60 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~ 138 (181)
T 3tw8_B 60 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPE-RKVVETEDAYK 138 (181)
T ss_dssp EEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGG-GCCSCHHHHHH
T ss_pred EEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCch-hcccCHHHHHH
Confidence 47999999999999999999999999999999999999999999999988888999999999999988 78899999999
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++...+++ |+++||++|.|+++.
T Consensus 139 ~~~~~~~~-~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 139 FAGQMGIQ-LFETSAKENVNVEEM 161 (181)
T ss_dssp HHHHHTCC-EEECBTTTTBSHHHH
T ss_pred HHHHcCCe-EEEEECCCCCCHHHH
Confidence 99999985 668999999999976
No 14
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=150.57 Aligned_cols=104 Identities=23% Similarity=0.328 Sum_probs=95.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+. .|+..+....+++|++|||||+|+..+
T Consensus 70 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 149 (201)
T 2q3h_A 70 LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKC 149 (201)
T ss_dssp EEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTT
T ss_pred EEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhccc
Confidence 469999999999999999999999999999999999999997 799999888789999999999999652
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.++.+++..+++.+++..|+++||++|.||+++
T Consensus 150 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 185 (201)
T 2q3h_A 150 KEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEV 185 (201)
T ss_dssp TCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHH
T ss_pred ccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHH
Confidence 36789999999999999877889999999999976
No 15
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.89 E-value=2e-22 Score=148.55 Aligned_cols=102 Identities=35% Similarity=0.530 Sum_probs=95.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus 67 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~ 145 (196)
T 3tkl_A 67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAK 145 (196)
T ss_dssp EEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHH
T ss_pred EEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999998876 6899999999999988 8899999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++..++++ |+++||++|.||+++
T Consensus 146 ~~~~~~~~~-~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 146 EFADSLGIP-FLETSAKNATNVEQS 169 (196)
T ss_dssp HHHHHTTCC-EEEECTTTCTTHHHH
T ss_pred HHHHHcCCc-EEEEeCCCCCCHHHH
Confidence 999999985 678999999999987
No 16
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=9.9e-23 Score=152.56 Aligned_cols=102 Identities=35% Similarity=0.543 Sum_probs=94.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... .++|++|||||+|+.+ .+.++.+++.
T Consensus 77 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~ 155 (201)
T 2ew1_A 77 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAE 155 (201)
T ss_dssp EEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCSSCHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999998876 6899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++..+++ |+++||++|.||++.
T Consensus 156 ~~~~~~~~~-~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 156 EFSEAQDMY-YLETSAKESDNVEKL 179 (201)
T ss_dssp HHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred HHHHHcCCE-EEEEeCCCCCCHHHH
Confidence 999999875 778999999999976
No 17
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.89 E-value=1.2e-22 Score=152.43 Aligned_cols=104 Identities=20% Similarity=0.347 Sum_probs=94.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
++||||+|++.|..++..+++++|++|+|||++++.||+.+ ..|+..+....+++|++|||||+|+.++
T Consensus 78 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 157 (205)
T 1gwn_A 78 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNH 157 (205)
T ss_dssp EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTT
T ss_pred EEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhccc
Confidence 47999999999999999999999999999999999999999 7899999887789999999999999741
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccC-CcchhhhH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVV-EPQEVVEA 104 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~-~~~~v~~~ 104 (170)
.+.|+.+++..+++.++...|+++||+ ++.||+++
T Consensus 158 ~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~l 194 (205)
T 1gwn_A 158 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 194 (205)
T ss_dssp TCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHH
Confidence 367999999999999987678899999 68999976
No 18
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.89 E-value=3.5e-22 Score=148.53 Aligned_cols=102 Identities=30% Similarity=0.527 Sum_probs=95.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus 59 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~ 137 (203)
T 1zbd_A 59 LQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED-ERVVSSERGR 137 (203)
T ss_dssp EEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT-SCCSCHHHHH
T ss_pred EEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999998876 6899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++.+++ .|+++||++|.||++.
T Consensus 138 ~~~~~~~~-~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 138 QLADHLGF-EFFEASAKDNINVKQT 161 (203)
T ss_dssp HHHHHHTC-EEEECBTTTTBSSHHH
T ss_pred HHHHHCCC-eEEEEECCCCCCHHHH
Confidence 99999998 5778999999999987
No 19
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.89 E-value=1.6e-22 Score=147.83 Aligned_cols=102 Identities=21% Similarity=0.335 Sum_probs=94.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... .++|+++||||+|+.+ .+.++.+++
T Consensus 68 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~ 146 (183)
T 3kkq_A 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-LRKVTRDQG 146 (183)
T ss_dssp EEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST-TCCSCHHHH
T ss_pred EEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh-ccCcCHHHH
Confidence 3679999999999999999999999999999999999999999999987654 7899999999999988 889999999
Q ss_pred HHHHHhcCCCeEEEcccC-CcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVV-EPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~-~~~~v~~~ 104 (170)
..+++.++++ |+++||+ ++.||++.
T Consensus 147 ~~~~~~~~~~-~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 147 KEMATKYNIP-YIETSAKDPPLNVDKT 172 (183)
T ss_dssp HHHHHHHTCC-EEEEBCSSSCBSHHHH
T ss_pred HHHHHHhCCe-EEEeccCCCCCCHHHH
Confidence 9999999976 7789999 99999976
No 20
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=5.7e-23 Score=151.72 Aligned_cols=102 Identities=32% Similarity=0.505 Sum_probs=95.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||+|++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus 74 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~ 152 (191)
T 3dz8_A 74 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQ 152 (191)
T ss_dssp EEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred EEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999998877 7899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++.+++ .|+++||++|.||+++
T Consensus 153 ~~~~~~~~-~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 153 LLAEQLGF-DFFEASAKENISVRQA 176 (191)
T ss_dssp HHHHHHTC-EEEECBTTTTBSHHHH
T ss_pred HHHHHcCC-eEEEEECCCCCCHHHH
Confidence 99999998 5779999999999976
No 21
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.89 E-value=6.3e-23 Score=149.49 Aligned_cols=103 Identities=28% Similarity=0.382 Sum_probs=93.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCCCC-------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTTPQ------- 72 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~------- 72 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+. .|+..+....+++|+++||||+|+.+ .+.
T Consensus 58 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~ 136 (182)
T 3bwd_D 58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD-DKQFFIDHPG 136 (182)
T ss_dssp CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT-CHHHHHHC--
T ss_pred EEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc-Cccccccccc
Confidence 569999999999999999999999999999999999999997 79999988778899999999999876 333
Q ss_pred ---CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 ---VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 ---v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++.+++.++++.+++..|+++||++|.||++.
T Consensus 137 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (182)
T 3bwd_D 137 AVPITTVQGEELKKLIGAPAYIECSSKSQENVKGV 171 (182)
T ss_dssp CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHH
Confidence 68899999999999877889999999999976
No 22
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.89 E-value=1.4e-22 Score=145.96 Aligned_cols=102 Identities=19% Similarity=0.272 Sum_probs=88.2
Q ss_pred CeEEecCCcccccc-chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVAS-ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~-~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+++|||+|++.+.. ++..+++++|++++|||+++++||+.+..|+..+.... +++|+++||||+|+.+ .+.++.++
T Consensus 53 ~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~ 131 (169)
T 3q85_A 53 LIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEE 131 (169)
T ss_dssp EEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG-GCCSCHHH
T ss_pred EEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh-cccCCHHH
Confidence 46999999999876 88899999999999999999999999999999998876 4899999999999987 78999999
Q ss_pred HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+..+++.+++ .|+++||++|.|++++
T Consensus 132 ~~~~~~~~~~-~~~~~Sa~~~~~v~~l 157 (169)
T 3q85_A 132 GRHLAGTLSC-KHIETSAALHHNTREL 157 (169)
T ss_dssp HHHHHHHTTC-EEEECBTTTTBSHHHH
T ss_pred HHHHHHHcCC-cEEEecCccCCCHHHH
Confidence 9999999998 5779999999999976
No 23
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.88 E-value=3.9e-23 Score=154.82 Aligned_cols=103 Identities=26% Similarity=0.381 Sum_probs=92.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCCC--------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTTP-------- 71 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~-------- 71 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+. .|+..+....+++|++|||||+|+.+ .+
T Consensus 59 ~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~ 137 (212)
T 2j0v_A 59 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD-DKGYLADHTN 137 (212)
T ss_dssp EEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT-CHHHHHTCSS
T ss_pred EEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh-CccccccccC
Confidence 479999999999999999999999999999999999999997 89999988778999999999999976 33
Q ss_pred CCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 72 QVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 72 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++.+++..+++.+++..|+++||++|.||+++
T Consensus 138 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 170 (212)
T 2j0v_A 138 VITSTQGEELRKQIGAAAYIECSSKTQQNVKAV 170 (212)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHH
T ss_pred CCCHHHHHHHHHHcCCceEEEccCCCCCCHHHH
Confidence 358899999999999877899999999999976
No 24
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.88 E-value=2.7e-22 Score=147.70 Aligned_cols=102 Identities=32% Similarity=0.514 Sum_probs=94.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus 73 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~ 151 (189)
T 2gf9_A 73 LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED-ERVVPAEDGR 151 (189)
T ss_dssp EEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred EEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccCCCHHHHH
Confidence 4799999999999999999999999999999999999999999999998876 6899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++++.+++ .|+++||++|.|+++.
T Consensus 152 ~~~~~~~~-~~~~~Sa~~g~gi~~l 175 (189)
T 2gf9_A 152 RLADDLGF-EFFEASAKENINVKQV 175 (189)
T ss_dssp HHHHHHTC-EEEECBTTTTBSHHHH
T ss_pred HHHHHcCC-eEEEEECCCCCCHHHH
Confidence 99999998 5778999999999976
No 25
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=149.47 Aligned_cols=101 Identities=25% Similarity=0.309 Sum_probs=89.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEGTTPQVTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~~~~~v~~~ 76 (170)
++||||+|++.|..+ ..+++++|++++|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+
T Consensus 71 l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~ 148 (187)
T 3c5c_A 71 LRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ-YRQVTKA 148 (187)
T ss_dssp EEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG-GCSSCHH
T ss_pred EEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh-cCccCHH
Confidence 478999999999876 679999999999999999999999999999988764 6899999999999987 7889999
Q ss_pred HHHHHHHhcCCCeEEEccc-CCcchhhhH
Q psy17235 77 DMENFWSRRSSRRFKPQEV-VEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~~~~e~Sa-~~~~~v~~~ 104 (170)
++.++++.+++ .|+++|| ++|.||+++
T Consensus 149 ~~~~~~~~~~~-~~~e~Sa~~~g~gv~~l 176 (187)
T 3c5c_A 149 EGVALAGRFGC-LFFEVSACLDFEHVQHV 176 (187)
T ss_dssp HHHHHHHHHTC-EEEECCSSSCSHHHHHH
T ss_pred HHHHHHHHcCC-cEEEEeecCccccHHHH
Confidence 99999999998 5779999 899999976
No 26
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.88 E-value=6.5e-22 Score=147.50 Aligned_cols=102 Identities=32% Similarity=0.509 Sum_probs=94.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus 59 ~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~ 137 (206)
T 2bcg_Y 59 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD-KRVVEYDVAK 137 (206)
T ss_dssp EEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHH
T ss_pred EEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999998776 7899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++...+++ |+++||++|.||++.
T Consensus 138 ~~~~~~~~~-~~~~Sa~~g~gi~~l 161 (206)
T 2bcg_Y 138 EFADANKMP-FLETSALDSTNVEDA 161 (206)
T ss_dssp HHHHHTTCC-EEECCTTTCTTHHHH
T ss_pred HHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 999999985 678999999999987
No 27
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.88 E-value=2.8e-22 Score=146.66 Aligned_cols=102 Identities=34% Similarity=0.580 Sum_probs=94.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.. .+.++.+++.
T Consensus 61 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~ 139 (186)
T 2bme_A 61 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA-DREVTFLEAS 139 (186)
T ss_dssp EEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999988775 7899999999999977 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++..++ .|+++||++|.||++.
T Consensus 140 ~~~~~~~~-~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 140 RFAQENEL-MFLETSALTGENVEEA 163 (186)
T ss_dssp HHHHHTTC-EEEECCTTTCTTHHHH
T ss_pred HHHHHcCC-EEEEecCCCCCCHHHH
Confidence 99999987 5778999999999976
No 28
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.88 E-value=2.5e-22 Score=148.06 Aligned_cols=98 Identities=14% Similarity=0.330 Sum_probs=88.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCC--CCCCCCCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLE--GTTPQVTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~--~~~~~v~~~ 76 (170)
|+||||+|++.|. +++++|++++|||++++.||+.+..|+..+.... +++|++|||||+|+. . .+.++.+
T Consensus 69 l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~v~~~ 142 (184)
T 3ihw_A 69 LLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAAN-PRVIDDS 142 (184)
T ss_dssp EEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTB-CCCSCHH
T ss_pred EEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc-ccccCHH
Confidence 4689999999876 8899999999999999999999999999998875 689999999999994 4 6789999
Q ss_pred HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++.++++.++...|+++||++|.||+++
T Consensus 143 ~~~~~~~~~~~~~~~e~Sa~~~~gv~~l 170 (184)
T 3ihw_A 143 RARKLSTDLKRCTYYETCATYGLNVERV 170 (184)
T ss_dssp HHHHHHHHTTTCEEEEEBTTTTBTHHHH
T ss_pred HHHHHHHHcCCCeEEEecCCCCCCHHHH
Confidence 9999999998667889999999999976
No 29
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.88 E-value=1.9e-22 Score=144.70 Aligned_cols=103 Identities=24% Similarity=0.354 Sum_probs=94.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ .+.++.+++
T Consensus 53 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~ 131 (167)
T 1c1y_A 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQG 131 (167)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG-GCCSCHHHH
T ss_pred EEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc-cccCCHHHH
Confidence 4789999999999999999999999999999999999999999999887764 6899999999999987 788999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.++...|+++||++|.|+++.
T Consensus 132 ~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 132 QNLARQWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp HHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred HHHHHHccCCcEEEecCCCCCCHHHH
Confidence 99999985556889999999999976
No 30
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.88 E-value=3.5e-22 Score=148.82 Aligned_cols=103 Identities=24% Similarity=0.385 Sum_probs=95.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCCC---------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGTT--------- 70 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~--------- 70 (170)
++||||||++.|..++..+++++|++++|||++++.+|+.+ ..|+..+....+++|+++||||+|+.. .
T Consensus 75 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~ 153 (201)
T 2gco_A 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ-DEHTRRELAK 153 (201)
T ss_dssp EEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT-CHHHHHHHHT
T ss_pred EEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc-Cccchhhhcc
Confidence 47999999999999999999999999999999999999999 689988888778999999999999976 3
Q ss_pred ---CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 71 ---PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 ---~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+.++.+++..+++..+...|+++||++|.||++.
T Consensus 154 ~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 190 (201)
T 2gco_A 154 MKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREV 190 (201)
T ss_dssp TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred cccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHH
Confidence 6789999999999999877889999999999976
No 31
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.88 E-value=8.8e-22 Score=143.26 Aligned_cols=102 Identities=33% Similarity=0.490 Sum_probs=94.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|+++|+||+|+.+ .+.++.+++.
T Consensus 63 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~ 141 (181)
T 2efe_B 63 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD-ARKVTAEDAQ 141 (181)
T ss_dssp EEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHH
T ss_pred EEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cccCCHHHHH
Confidence 4799999999999999999999999999999999999999999999998876 6899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++.++++ |+++||++|.|+++.
T Consensus 142 ~~~~~~~~~-~~~~Sa~~g~gi~~l 165 (181)
T 2efe_B 142 TYAQENGLF-FMETSAKTATNVKEI 165 (181)
T ss_dssp HHHHHTTCE-EEECCSSSCTTHHHH
T ss_pred HHHHHcCCE-EEEEECCCCCCHHHH
Confidence 999999884 778999999999976
No 32
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.88 E-value=2.3e-22 Score=146.82 Aligned_cols=104 Identities=21% Similarity=0.320 Sum_probs=94.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+. .|+..+....+++|+++||||+|+.+.
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 134 (186)
T 1mh1_A 55 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEK 134 (186)
T ss_dssp EEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhccc
Confidence 469999999999999999999999999999999999999997 799999887789999999999998652
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.++.+++..+++.+++..|+++||++|.|+++.
T Consensus 135 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 170 (186)
T 1mh1_A 135 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 170 (186)
T ss_dssp TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred ccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHH
Confidence 26789999999999999867889999999999976
No 33
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=151.79 Aligned_cols=104 Identities=18% Similarity=0.311 Sum_probs=80.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCC---------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTT--------- 70 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~--------- 70 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+. .|+..+....+++|++|||||+|+....
T Consensus 84 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 163 (214)
T 2j1l_A 84 LHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRN 163 (214)
T ss_dssp EEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHT
T ss_pred EEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhccc
Confidence 479999999999999999999999999999999999999996 7999998877889999999999997621
Q ss_pred --CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 71 --PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 --~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+.++.+++..+++.+++..|+++||++|.||+++
T Consensus 164 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el 199 (214)
T 2j1l_A 164 GLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAV 199 (214)
T ss_dssp TCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred ccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence 4789999999999999877889999999999976
No 34
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.88 E-value=3.6e-22 Score=148.63 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=93.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... .++|++|||||+|+.. .+.++..++
T Consensus 74 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~ 152 (201)
T 3oes_A 74 LHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP-EREVQAVEG 152 (201)
T ss_dssp EEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG-GCCSCHHHH
T ss_pred EEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc-ccccCHHHH
Confidence 4799999999999999999999999999999999999999999999988764 6899999999999987 789999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.+++ .|+++||++|.||+++
T Consensus 153 ~~~~~~~~~-~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 153 KKLAESWGA-TFMESSARENQLTQGI 177 (201)
T ss_dssp HHHHHHHTC-EEEECCTTCHHHHHHH
T ss_pred HHHHHHhCC-eEEEEeCCCCCCHHHH
Confidence 999999998 5778999999999976
No 35
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.88 E-value=6.1e-22 Score=147.11 Aligned_cols=103 Identities=20% Similarity=0.212 Sum_probs=83.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCC----CCeEEEEeeCCCCCCCCCCCCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE----NAKIFLCGNKSDLEGTTPQVTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~----~~pvvlvgnK~Dl~~~~~~v~~~ 76 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+....+ ++|++|||||+|+.+..+.++.+
T Consensus 75 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~ 154 (208)
T 2yc2_C 75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLD 154 (208)
T ss_dssp EEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHH
T ss_pred EEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHH
Confidence 47999999999999999999999999999999999999999999999988764 89999999999996423678899
Q ss_pred HHHHHHHhcCCCeEEEcccCC-cchhhhH
Q psy17235 77 DMENFWSRRSSRRFKPQEVVE-PQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~~~~e~Sa~~-~~~v~~~ 104 (170)
++..+++.+++ .|+++||++ +.||++.
T Consensus 155 ~~~~~~~~~~~-~~~~~Sa~~~~~gi~~l 182 (208)
T 2yc2_C 155 MAQDWATTNTL-DFFDVSANPPGKDADAP 182 (208)
T ss_dssp HHHHHHHHTTC-EEEECCC-------CHH
T ss_pred HHHHHHHHcCC-EEEEeccCCCCcCHHHH
Confidence 99999999997 577899999 9999986
No 36
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=4.2e-22 Score=144.88 Aligned_cols=102 Identities=33% Similarity=0.477 Sum_probs=87.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... .++|+++|+||+|+.+ .+.++.+++.
T Consensus 62 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~ 140 (180)
T 2g6b_A 62 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH-ERVVKREDGE 140 (180)
T ss_dssp EEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS-CCCSCHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999998876 6899999999999988 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++.++++ |+++||+++.|+++.
T Consensus 141 ~~~~~~~~~-~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 141 KLAKEYGLP-FMETSAKTGLNVDLA 164 (180)
T ss_dssp HHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred HHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 999999984 778999999999976
No 37
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.88 E-value=5.1e-22 Score=142.64 Aligned_cols=102 Identities=31% Similarity=0.457 Sum_probs=94.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ .+.++.+++.
T Consensus 57 ~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~ 135 (170)
T 1r2q_A 57 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-KRAVDFQEAQ 135 (170)
T ss_dssp EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred EEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999988775 7899999999999987 7789999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++...++ .|+++||++|.|+++.
T Consensus 136 ~~~~~~~~-~~~~~Sa~~g~gi~~l 159 (170)
T 1r2q_A 136 SYADDNSL-LFMETSAKTSMNVNEI 159 (170)
T ss_dssp HHHHHTTC-EEEECCTTTCTTHHHH
T ss_pred HHHHHcCC-eEEEEeCCCCCCHHHH
Confidence 99999887 4778999999999976
No 38
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.88 E-value=4.1e-22 Score=144.44 Aligned_cols=102 Identities=31% Similarity=0.522 Sum_probs=94.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ .+.++.+++.
T Consensus 66 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~ 144 (179)
T 1z0f_A 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA-QRDVTYEEAK 144 (179)
T ss_dssp EEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred EEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999998877 7899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++++.+++ .|+++||++|.||++.
T Consensus 145 ~~~~~~~~-~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 145 QFAEENGL-LFLEASAKTGENVEDA 168 (179)
T ss_dssp HHHHHTTC-EEEECCTTTCTTHHHH
T ss_pred HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 99999987 5778999999999976
No 39
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=149.61 Aligned_cols=103 Identities=36% Similarity=0.561 Sum_probs=94.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||+|++.|..++..+++++|++|+|||++++.||+.+..|+..+.... .++|++|||||+|+.+ .+.++.+++.
T Consensus 77 l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~ 155 (192)
T 2il1_A 77 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREITRQQGE 155 (192)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999888776 6899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++..+...|+++||++|.||++.
T Consensus 156 ~~~~~~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 156 KFAQQITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp HHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred HHHHhcCCCeEEEEeCCCCCCHHHH
Confidence 9999864456889999999999976
No 40
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.88 E-value=7.2e-22 Score=143.67 Aligned_cols=98 Identities=16% Similarity=0.270 Sum_probs=84.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh---C-CCCeEEEEeeCCCCC--CCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY---A-ENAKIFLCGNKSDLE--GTTPQVT 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~---~-~~~pvvlvgnK~Dl~--~~~~~v~ 74 (170)
++||||+|+++ ..|++++|++|+|||++++.||+.+..|+..+... . +++|++|||||+|+. . .+.++
T Consensus 56 l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~-~~~v~ 129 (178)
T 2iwr_A 56 VLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS-PRVVG 129 (178)
T ss_dssp EEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB-CCCSC
T ss_pred EEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc-cCcCC
Confidence 47899999986 56889999999999999999999999976655443 2 589999999999994 4 67899
Q ss_pred HHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 75 EADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 75 ~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++.++++..+...|+++||++|.||+++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 159 (178)
T 2iwr_A 130 DARARALXADMKRCSYYETXATYGLNVDRV 159 (178)
T ss_dssp HHHHHHHHHHHSSEEEEEEBTTTTBTHHHH
T ss_pred HHHHHHHHHhhcCCeEEEEeccccCCHHHH
Confidence 999999999885456889999999999976
No 41
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.88 E-value=3.3e-22 Score=145.20 Aligned_cols=102 Identities=23% Similarity=0.311 Sum_probs=92.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCe-EEEEeeCCCCCCCCCCCCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAK-IFLCGNKSDLEGTTPQVTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~p-vvlvgnK~Dl~~~~~~v~~~ 76 (170)
+++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... .+.| ++|||||+|+.+ .+.++.+
T Consensus 58 ~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~ 136 (178)
T 2hxs_A 58 LQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH-MRTIKPE 136 (178)
T ss_dssp EEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG-GCSSCHH
T ss_pred EEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc-ccccCHH
Confidence 4799999999999999999999999999999999999999999999887754 2445 899999999987 7889999
Q ss_pred HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++..+++.+++ .|+++||++|.||+++
T Consensus 137 ~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 137 KHLRFCQENGF-SSHFVSAKTGDSVFLC 163 (178)
T ss_dssp HHHHHHHHHTC-EEEEECTTTCTTHHHH
T ss_pred HHHHHHHHcCC-cEEEEeCCCCCCHHHH
Confidence 99999999998 4778999999999976
No 42
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.88 E-value=2.3e-22 Score=144.77 Aligned_cols=102 Identities=24% Similarity=0.440 Sum_probs=87.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+.+|||||++.+..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++|+||+|+.+ .+.++.+++.
T Consensus 57 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~ 135 (170)
T 1z08_A 57 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK-ERHVSIQEAE 135 (170)
T ss_dssp EEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred EEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccccCHHHHH
Confidence 4699999999999999999999999999999999999999999999987765 6899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++..+++ |+++||++|.|+++.
T Consensus 136 ~~~~~~~~~-~~~~Sa~~~~gi~~l 159 (170)
T 1z08_A 136 SYAESVGAK-HYHTSAKQNKGIEEL 159 (170)
T ss_dssp HHHHHTTCE-EEEEBTTTTBSHHHH
T ss_pred HHHHHcCCe-EEEecCCCCCCHHHH
Confidence 999999974 678999999999976
No 43
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.88 E-value=9.1e-22 Score=142.30 Aligned_cols=102 Identities=21% Similarity=0.239 Sum_probs=86.7
Q ss_pred CeEEecCCccc--cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235 1 MQLWDTGGMER--VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~--~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~ 76 (170)
+++|||+|++. +..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ .+.++.+
T Consensus 54 ~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~-~~~v~~~ 132 (175)
T 2nzj_A 54 LVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR-CREVSVE 132 (175)
T ss_dssp EEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT-TCCSCHH
T ss_pred EEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc-ccccCHH
Confidence 46999999988 67788899999999999999999999999999999888764 5899999999999987 7889999
Q ss_pred HHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++..++..+++ .|+++||++|.||++.
T Consensus 133 ~~~~~~~~~~~-~~~~~Sa~~g~gi~~l 159 (175)
T 2nzj_A 133 EGRACAVVFDC-KFIETSATLQHNVAEL 159 (175)
T ss_dssp HHHHHHHHHTS-EEEECBTTTTBSHHHH
T ss_pred HHHHHHHHcCC-eEEEEecCCCCCHHHH
Confidence 99999999987 5778999999999976
No 44
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.88 E-value=6.8e-22 Score=144.93 Aligned_cols=102 Identities=32% Similarity=0.552 Sum_probs=94.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++.|..++..+++++|++|+|||++++.++..+..|+..+.... +++|+++|+||+|+.+ .+.++.+++
T Consensus 72 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~ 150 (195)
T 3bc1_A 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED-QRAVKEEEA 150 (195)
T ss_dssp EEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG-GCCSCHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHH
Confidence 4799999999999999999999999999999999999999999999998776 6899999999999987 778999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++..++++ |+++||+++.||++.
T Consensus 151 ~~~~~~~~~~-~~~~Sa~~~~~v~~l 175 (195)
T 3bc1_A 151 RELAEKYGIP-YFETSAANGTNISHA 175 (195)
T ss_dssp HHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred HHHHHHcCCC-EEEEECCCCCCHHHH
Confidence 9999999985 678999999999976
No 45
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.88 E-value=4.1e-22 Score=148.45 Aligned_cols=102 Identities=34% Similarity=0.565 Sum_probs=94.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.. .+.++.+++.
T Consensus 76 l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~ 154 (200)
T 2o52_A 76 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEAS 154 (200)
T ss_dssp EEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred EEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999988766 7899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++..++ .|+++||++|.||+++
T Consensus 155 ~~~~~~~~-~~~~~SA~~g~gi~~l 178 (200)
T 2o52_A 155 RFAQENEL-MFLETSALTGENVEEA 178 (200)
T ss_dssp HHHHHTTC-EEEEECTTTCTTHHHH
T ss_pred HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 99999987 4778999999999977
No 46
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.88 E-value=6.2e-22 Score=142.39 Aligned_cols=101 Identities=33% Similarity=0.508 Sum_probs=93.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++|+||+|+. .+.++.+++.
T Consensus 54 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~ 131 (170)
T 1g16_A 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGE 131 (170)
T ss_dssp EEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHH
T ss_pred EEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC--cCccCHHHHH
Confidence 4799999999999999999999999999999999999999999999998876 689999999999994 5788899999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++.++++ |+++||++|.||++.
T Consensus 132 ~~~~~~~~~-~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 132 ALAKELGIP-FIESSAKNDDNVNEI 155 (170)
T ss_dssp HHHHHHTCC-EEECBTTTTBSHHHH
T ss_pred HHHHHcCCe-EEEEECCCCCCHHHH
Confidence 999999985 778999999999976
No 47
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=5.1e-22 Score=150.19 Aligned_cols=102 Identities=22% Similarity=0.247 Sum_probs=91.4
Q ss_pred CeEEecCCccc-cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~-~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+.+|||+|++. +..+++.|++.+|++|+|||++++.||+.+..|+..+.... +++|+||||||+|+.. .+.++.++
T Consensus 89 l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~-~r~v~~~e 167 (211)
T 2g3y_A 89 IILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-CREVSVSE 167 (211)
T ss_dssp EEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG-GCCSCHHH
T ss_pred EEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc-CceEeHHH
Confidence 36899999987 56788899999999999999999999999999998887643 6899999999999987 78899999
Q ss_pred HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+..++..+++ .|+++||++|.||+++
T Consensus 168 ~~~~a~~~~~-~~~e~SAk~g~~v~el 193 (211)
T 2g3y_A 168 GRACAVVFDC-KFIETSAAVQHNVKEL 193 (211)
T ss_dssp HHHHHHHHTC-EEEECBTTTTBSHHHH
T ss_pred HHHHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 9999999987 5779999999999976
No 48
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.87 E-value=1.1e-21 Score=141.07 Aligned_cols=102 Identities=25% Similarity=0.464 Sum_probs=94.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+.+|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ .+.+..+++.
T Consensus 57 ~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~-~~~v~~~~~~ 135 (170)
T 1z0j_A 57 FLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD-VREVMERDAK 135 (170)
T ss_dssp EEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred EEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc-ccccCHHHHH
Confidence 4699999999999999999999999999999999999999999999998875 7899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++..++ .|+++||+++.|+++.
T Consensus 136 ~~~~~~~~-~~~~~Sa~~~~~i~~l 159 (170)
T 1z0j_A 136 DYADSIHA-IFVETSAKNAININEL 159 (170)
T ss_dssp HHHHHTTC-EEEECBTTTTBSHHHH
T ss_pred HHHHHcCC-EEEEEeCCCCcCHHHH
Confidence 99999987 5778999999999976
No 49
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.87 E-value=6.4e-22 Score=143.77 Aligned_cols=104 Identities=28% Similarity=0.396 Sum_probs=82.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE 75 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~ 75 (170)
+++|||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|+++||||+|+....+.++.
T Consensus 60 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~ 139 (182)
T 1ky3_A 60 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSE 139 (182)
T ss_dssp EEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCH
T ss_pred EEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCH
Confidence 4799999999999999999999999999999999999999999999887654 68999999999999653567899
Q ss_pred HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++..+++..+...|+++||++|.||++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (182)
T 1ky3_A 140 KSAQELAKSLGDIPLFLTSAKNAINVDTA 168 (182)
T ss_dssp HHHHHHHHHTTSCCEEEEBTTTTBSHHHH
T ss_pred HHHHHHHHhcCCCeEEEEecCCCCCHHHH
Confidence 99999998655556889999999999976
No 50
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.87 E-value=7.3e-22 Score=145.68 Aligned_cols=102 Identities=33% Similarity=0.518 Sum_probs=94.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.+|..+..|+..+.... .++|++|||||+|+.+ .+.+..+++.
T Consensus 76 ~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~ 154 (193)
T 2oil_A 76 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ-AREVPTEEAR 154 (193)
T ss_dssp EEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred EEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999988775 6899999999999987 6788999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++...++ .|+++||++|.||++.
T Consensus 155 ~~~~~~~~-~~~~~Sa~~~~gi~~l 178 (193)
T 2oil_A 155 MFAENNGL-LFLETSALDSTNVELA 178 (193)
T ss_dssp HHHHHTTC-EEEEECTTTCTTHHHH
T ss_pred HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 99999988 5778999999999976
No 51
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.87 E-value=5.9e-22 Score=142.21 Aligned_cols=102 Identities=32% Similarity=0.452 Sum_probs=94.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
+++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+....++.|+++|+||+|+.+ .+.++.+++..
T Consensus 56 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~ 134 (168)
T 1z2a_A 56 LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLD-DSCIKNEEAEG 134 (168)
T ss_dssp EEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGG-GCSSCHHHHHH
T ss_pred EEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCc-ccccCHHHHHH
Confidence 47999999999999999999999999999999999999999999999887768899999999999987 77899999999
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++.+++ .|+++||+++.|+++.
T Consensus 135 ~~~~~~~-~~~~~Sa~~~~~i~~l 157 (168)
T 1z2a_A 135 LAKRLKL-RFYRTSVKEDLNVSEV 157 (168)
T ss_dssp HHHHHTC-EEEECBTTTTBSSHHH
T ss_pred HHHHcCC-eEEEEecCCCCCHHHH
Confidence 9999998 5778999999999976
No 52
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=145.57 Aligned_cols=102 Identities=27% Similarity=0.400 Sum_probs=94.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+.||||||++.|..++..+++++|++++|||++++.||..+..|+..+.... .++|++|||||+|+.+ .+.++.+++
T Consensus 64 ~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~ 142 (206)
T 2bov_A 64 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEA 142 (206)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG-GCCSCHHHH
T ss_pred EEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc-cccccHHHH
Confidence 4699999999999999999999999999999999999999999999998876 4899999999999987 778999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.+++ .|+++||++|.||++.
T Consensus 143 ~~~~~~~~~-~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 143 KNRAEQWNV-NYVETSAKTRANVDKV 167 (206)
T ss_dssp HHHHHHHTC-EEEEECTTTCTTHHHH
T ss_pred HHHHHHhCC-eEEEEeCCCCCCHHHH
Confidence 999999998 4778999999999987
No 53
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=1.1e-21 Score=140.94 Aligned_cols=103 Identities=27% Similarity=0.428 Sum_probs=93.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCC--CCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGT--TPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~--~~~v~~~~ 77 (170)
+++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+... .+.+..++
T Consensus 54 ~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~ 133 (170)
T 1ek0_A 54 FEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREE 133 (170)
T ss_dssp EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHH
T ss_pred EEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHH
Confidence 4799999999999999999999999999999999999999999999998776 78999999999999751 27889999
Q ss_pred HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+..+++..++ .|+++||++|.|+++.
T Consensus 134 ~~~~~~~~~~-~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 134 GEKLAEEKGL-LFFETSAKTGENVNDV 159 (170)
T ss_dssp HHHHHHHHTC-EEEECCTTTCTTHHHH
T ss_pred HHHHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 9999999998 5778999999999976
No 54
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.5e-22 Score=149.72 Aligned_cols=102 Identities=31% Similarity=0.493 Sum_probs=91.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++.
T Consensus 64 ~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~ 142 (223)
T 3cpj_B 64 AQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH-LRAVPTEESK 142 (223)
T ss_dssp EEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG-GCCSCHHHHH
T ss_pred EEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999998775 6899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++..++ .|+++||+++.||+++
T Consensus 143 ~~~~~~~~-~~~~~Sa~~~~gi~~l 166 (223)
T 3cpj_B 143 TFAQENQL-LFTETSALNSENVDKA 166 (223)
T ss_dssp HHHHHTTC-EEEECCCC-CCCHHHH
T ss_pred HHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 99999887 5778999999999987
No 55
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.87 E-value=7.2e-22 Score=144.48 Aligned_cols=101 Identities=24% Similarity=0.360 Sum_probs=90.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ +.+..+++
T Consensus 54 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~--~~~~~~~~ 131 (189)
T 4dsu_A 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQA 131 (189)
T ss_dssp EEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS--CSSCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc--cccCHHHH
Confidence 4689999999999999999999999999999999999999999999988765 6899999999999974 67888999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.++++ |+++||++|.|+++.
T Consensus 132 ~~~~~~~~~~-~~~~Sa~~g~gi~~l 156 (189)
T 4dsu_A 132 QDLARSYGIP-FIETSAKTRQGVDDA 156 (189)
T ss_dssp HHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred HHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 9999999985 678999999999976
No 56
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.87 E-value=2.8e-22 Score=149.95 Aligned_cols=104 Identities=21% Similarity=0.322 Sum_probs=95.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+. .|+..+....+++|++|||||+|+.+.
T Consensus 80 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 159 (204)
T 4gzl_A 80 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEK 159 (204)
T ss_dssp EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhcc
Confidence 469999999999999999999999999999999999999997 899999888789999999999998762
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.++.+++..+++.+++..|+++||++|.||+++
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 195 (204)
T 4gzl_A 160 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 195 (204)
T ss_dssp TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred ccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHH
Confidence 13488999999999999988999999999999976
No 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.87 E-value=5.7e-22 Score=141.81 Aligned_cols=102 Identities=28% Similarity=0.381 Sum_probs=93.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... ++.|+++|+||+|+.+ .+.++.+++
T Consensus 53 ~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~ 131 (167)
T 1kao_A 53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES-EREVSSSEG 131 (167)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG-GCCSCHHHH
T ss_pred EEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc-cccCCHHHH
Confidence 4699999999999999999999999999999999999999999999988765 5899999999999987 788999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.++++ |+++||++|.|+++.
T Consensus 132 ~~~~~~~~~~-~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 132 RALAEEWGCP-FMETSAKSKTMVDEL 156 (167)
T ss_dssp HHHHHHHTSC-EEEECTTCHHHHHHH
T ss_pred HHHHHHhCCC-EEEecCCCCcCHHHH
Confidence 9999999985 678999999999976
No 58
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.2e-21 Score=146.49 Aligned_cols=104 Identities=23% Similarity=0.363 Sum_probs=94.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+ ..|+..+....+++|+++||||+|+...
T Consensus 75 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 154 (207)
T 2fv8_A 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARM 154 (207)
T ss_dssp EEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHT
T ss_pred EEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhc
Confidence 47999999999999999999999999999999999999999 6899988887789999999999999762
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.++.+++..++...++..|+++||++|.||++.
T Consensus 155 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el 190 (207)
T 2fv8_A 155 KQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREV 190 (207)
T ss_dssp TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred ccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHH
Confidence 15789999999999999877889999999999976
No 59
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.87 E-value=5e-22 Score=142.24 Aligned_cols=102 Identities=27% Similarity=0.401 Sum_probs=91.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+.+|||||++.+..++..+++++|++++|||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ .+.++.+++
T Consensus 54 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~ 132 (168)
T 1u8z_A 54 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEA 132 (168)
T ss_dssp EEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG-GCCSCHHHH
T ss_pred EEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc-cCccCHHHH
Confidence 4699999999999999999999999999999999999999999999988776 4899999999999987 778999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.+++ .|+++||++|.|+++.
T Consensus 133 ~~~~~~~~~-~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 133 KNRADQWNV-NYVETSAKTRANVDKV 157 (168)
T ss_dssp HHHHHHHTC-EEEECCTTTCTTHHHH
T ss_pred HHHHHHcCC-eEEEeCCCCCCCHHHH
Confidence 999999997 4778999999999976
No 60
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.2e-21 Score=144.74 Aligned_cols=102 Identities=25% Similarity=0.426 Sum_probs=94.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+.... +++|+++||||+|+.+ .+.++.+++.
T Consensus 74 ~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~v~~~~~~ 152 (192)
T 2fg5_A 74 FLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD-IREVPLKDAK 152 (192)
T ss_dssp EEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred EEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999998876 6899999999999976 6889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++++..++ .|+++||+++.||++.
T Consensus 153 ~~~~~~~~-~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 153 EYAESIGA-IVVETSAKNAINIEEL 176 (192)
T ss_dssp HHHHTTTC-EEEECBTTTTBSHHHH
T ss_pred HHHHHcCC-EEEEEeCCCCcCHHHH
Confidence 99999997 4778999999999976
No 61
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.87 E-value=9.6e-22 Score=142.72 Aligned_cols=102 Identities=24% Similarity=0.413 Sum_probs=93.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++.|..++..+++++|++++|||++++.||..+..|+..+.... .++|+++||||+|+.+ .+.++.+++
T Consensus 59 ~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~ 137 (181)
T 2fn4_A 59 LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEA 137 (181)
T ss_dssp EEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG-GCCSCHHHH
T ss_pred EEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHH
Confidence 4689999999999999999999999999999999999999999999885543 6899999999999987 788999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..++...++ .|+++||++|.||++.
T Consensus 138 ~~~~~~~~~-~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 138 SAFGASHHV-AYFEASAKLRLNVDEA 162 (181)
T ss_dssp HHHHHHTTC-EEEECBTTTTBSHHHH
T ss_pred HHHHHHcCC-eEEEecCCCCCCHHHH
Confidence 999999888 5778999999999976
No 62
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.87 E-value=5.1e-22 Score=149.21 Aligned_cols=102 Identities=30% Similarity=0.484 Sum_probs=93.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+.... .++|++||+||+|+.+ .+.++.+++
T Consensus 86 l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~ 164 (217)
T 2f7s_A 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQA 164 (217)
T ss_dssp EEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG-GCCSCHHHH
T ss_pred EEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc-ccccCHHHH
Confidence 4799999999999999999999999999999999999999999998877655 6899999999999987 788999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.++++ |+++||+++.||++.
T Consensus 165 ~~~~~~~~~~-~~~~Sa~~g~gi~~l 189 (217)
T 2f7s_A 165 RELADKYGIP-YFETSAATGQNVEKA 189 (217)
T ss_dssp HHHHHHTTCC-EEEEBTTTTBTHHHH
T ss_pred HHHHHHCCCc-EEEEECCCCCCHHHH
Confidence 9999999985 678999999999986
No 63
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.87 E-value=8.4e-23 Score=163.40 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=82.9
Q ss_pred CeEEecCCcccccc---chhhhccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCC-----
Q psy17235 1 MQLWDTGGMERVAS---ITSSYYKFAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTT----- 70 (170)
Q Consensus 1 l~iwDt~G~e~~~~---~~~~~~~~ad~iilv~D~t~~--~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~----- 70 (170)
|+|||||||++|.. +++.||++++|+|+|||++++ +++..+..|+.++....+++|++|+|||+|+.++.
T Consensus 48 LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~ 127 (331)
T 3r7w_B 48 LAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDA 127 (331)
T ss_dssp EEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHH
T ss_pred EEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhH
Confidence 58999999999964 479999999999999999998 33444444566666666899999999999997621
Q ss_pred -CCCCHHHHHHHHHh----cCCCeEEEcccCCcchhhhH
Q psy17235 71 -PQVTEADMENFWSR----RSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 -~~v~~~~~~~~a~~----~~~~~~~e~Sa~~~~~v~~~ 104 (170)
|.|+.++++++|+. +++ .|++|||++ .||.++
T Consensus 128 ~R~V~~~~~~~la~~~~~~~~i-~f~eTSAkd-~nV~eA 164 (331)
T 3r7w_B 128 QRDIMQRTGEELLELGLDGVQV-SFYLTSIFD-HSIYEA 164 (331)
T ss_dssp HHHHHHHHHHTTSSSSCSCCCE-EEECCCSSS-SHHHHH
T ss_pred HHHhhHHHHHHHHhhcccccCc-eEEEeccCC-CcHHHH
Confidence 57889999999986 455 588999998 588877
No 64
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.86 E-value=2e-21 Score=144.70 Aligned_cols=101 Identities=16% Similarity=0.222 Sum_probs=85.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.|..++..|++++|++++|||+++++||..+..|+..+.... .++|+++||||+|+.+ .++.+++
T Consensus 71 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~ 147 (198)
T 1f6b_A 71 FTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERL 147 (198)
T ss_dssp EEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHH
T ss_pred EEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHH
Confidence 4799999999999999999999999999999999999999999999987653 6899999999999965 6788888
Q ss_pred HHHHHhc----------------CCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRR----------------SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~----------------~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++... ....|++|||++|.||+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 189 (198)
T 1f6b_A 148 REMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 189 (198)
T ss_dssp HHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHH
T ss_pred HHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHH
Confidence 8877643 2236889999999999987
No 65
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.86 E-value=1.3e-21 Score=142.67 Aligned_cols=102 Identities=27% Similarity=0.400 Sum_probs=94.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++.|..++..+++++|++++|||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ .+.++.+++
T Consensus 68 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~ 146 (187)
T 2a9k_A 68 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEA 146 (187)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG-GCCSCHHHH
T ss_pred EEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHH
Confidence 4799999999999999999999999999999999999999999999988776 4899999999999987 778999999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++.+++ .|+++||+++.||++.
T Consensus 147 ~~~~~~~~~-~~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 147 KNRAEQWNV-NYVETSAKTRANVDKV 171 (187)
T ss_dssp HHHHHHTTC-EEEECCTTTCTTHHHH
T ss_pred HHHHHHcCC-eEEEeCCCCCCCHHHH
Confidence 999999998 5778999999999976
No 66
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=8.7e-22 Score=146.35 Aligned_cols=102 Identities=31% Similarity=0.463 Sum_probs=92.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCC------CCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLE------GTTPQV 73 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~------~~~~~v 73 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... +++|++|||||+|+. . .+.+
T Consensus 79 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~-~~~v 157 (199)
T 2p5s_A 79 LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEG-QKCV 157 (199)
T ss_dssp EEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTT-CCCC
T ss_pred EEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccccc-cccc
Confidence 4799999999999999999999999999999999999999999999988776 689999999999996 3 5789
Q ss_pred CHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 74 TEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++..+++..++ .|+++||++|.||+++
T Consensus 158 ~~~~~~~~~~~~~~-~~~~~SA~~g~gv~el 187 (199)
T 2p5s_A 158 PGHFGEKLAMTYGA-LFCETSAKDGSNIVEA 187 (199)
T ss_dssp CHHHHHHHHHHHTC-EEEECCTTTCTTHHHH
T ss_pred CHHHHHHHHHHcCC-eEEEeeCCCCCCHHHH
Confidence 99999999999998 5778999999999976
No 67
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.86 E-value=3.3e-21 Score=139.75 Aligned_cols=102 Identities=29% Similarity=0.531 Sum_probs=91.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE 75 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~ 75 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... .++|+++||||+|+. .+.++.
T Consensus 58 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~ 135 (177)
T 1wms_A 58 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVST 135 (177)
T ss_dssp EEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCH
T ss_pred EEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCH
Confidence 4799999999999999999999999999999999999999999999987654 578999999999997 367889
Q ss_pred HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++.++++..+...|+++||++|.|+++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (177)
T 1wms_A 136 EEAQAWCRDNGDYPYFETSAKDATNVAAA 164 (177)
T ss_dssp HHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred HHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence 99999998555446889999999999976
No 68
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.86 E-value=4.5e-21 Score=142.26 Aligned_cols=102 Identities=22% Similarity=0.242 Sum_probs=88.7
Q ss_pred CeEEecCCccc-cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~-~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+.+|||+|++. +..+++.|++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.. .+.++.++
T Consensus 58 l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~r~v~~~~ 136 (192)
T 2cjw_A 58 IILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-XREVSVSE 136 (192)
T ss_dssp EEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG-GCCSCHHH
T ss_pred EEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc-cccccHHH
Confidence 36899999887 56788999999999999999999999999999998887653 5899999999999987 68899999
Q ss_pred HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+..++..+++ .|+++||++|.||+++
T Consensus 137 ~~~~a~~~~~-~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 137 GRAXAVVFDX-KFIETSAAVQHNVKEL 162 (192)
T ss_dssp HHHHHHHTTC-EEEECBTTTTBSHHHH
T ss_pred HHHHHHHhCC-ceEEeccccCCCHHHH
Confidence 9999988887 5789999999999987
No 69
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.86 E-value=7.1e-21 Score=140.26 Aligned_cols=100 Identities=25% Similarity=0.385 Sum_probs=91.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
++||||||++.|..++..+++++|++++|||++++.+|..+..|+..+....+ .|+++|+||+| .. .+.++.+++..
T Consensus 95 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D-~~-~~~~~~~~~~~ 171 (208)
T 3clv_A 95 FDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKID-KN-KFQVDILEVQK 171 (208)
T ss_dssp EEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTT-CC--CCSCHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCC-cc-cccCCHHHHHH
Confidence 47999999999999999999999999999999999999999999999987754 99999999999 44 67899999999
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++..++ .|+++||+++.|+++.
T Consensus 172 ~~~~~~~-~~~~~Sa~~~~~i~~l 194 (208)
T 3clv_A 172 YAQDNNL-LFIQTSAKTGTNIKNI 194 (208)
T ss_dssp HHHHTTC-EEEEECTTTCTTHHHH
T ss_pred HHHHcCC-cEEEEecCCCCCHHHH
Confidence 9999988 5778999999999976
No 70
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.86 E-value=1.6e-21 Score=143.48 Aligned_cols=102 Identities=31% Similarity=0.476 Sum_probs=93.2
Q ss_pred CeEEecCCccccc-cchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVA-SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~-~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
++||||||++.|. .++..+++++|++|+|||++++.||+.+..|+..+.... .++|++|||||+|+.+ .+.++.++
T Consensus 71 ~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~ 149 (189)
T 1z06_A 71 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDL 149 (189)
T ss_dssp EEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG-GCCSCHHH
T ss_pred EEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceeCHHH
Confidence 4799999999998 899999999999999999999999999999999998875 6899999999999987 78899999
Q ss_pred HHHHHHhcCCCeEEEcccCCc---chhhhH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEP---QEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~---~~v~~~ 104 (170)
+..+++.++++ |+++||+++ .||.++
T Consensus 150 ~~~~~~~~~~~-~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 150 AQKFADTHSMP-LFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp HHHHHHHTTCC-EEECCSSSGGGGSCHHHH
T ss_pred HHHHHHHcCCE-EEEEeCCcCCcccCHHHH
Confidence 99999999985 778999999 777765
No 71
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=5.4e-21 Score=142.73 Aligned_cols=101 Identities=34% Similarity=0.508 Sum_probs=92.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+.... .++|+++|+||+|+. .+.+..+++.
T Consensus 71 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~ 148 (213)
T 3cph_A 71 LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGE 148 (213)
T ss_dssp EEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS--SCCSCHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc--ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999988776 579999999999993 5788899999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++..++++ |+++||+++.||++.
T Consensus 149 ~~~~~~~~~-~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 149 ALAKELGIP-FIESSAKNDDNVNEI 172 (213)
T ss_dssp HHHHHHTCC-EEECBTTTTBSSHHH
T ss_pred HHHHHcCCE-EEEEeCCCCCCHHHH
Confidence 999999985 778999999999987
No 72
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.86 E-value=2.5e-21 Score=140.32 Aligned_cols=102 Identities=30% Similarity=0.442 Sum_probs=94.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++|+||+|+.+ .+.++.+++.
T Consensus 65 ~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~ 143 (179)
T 2y8e_A 65 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQVSTEEGE 143 (179)
T ss_dssp EEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG-GCCSCHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cCcCCHHHHH
Confidence 4799999999999999999999999999999999999999999999987765 6899999999999987 7889999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++...++ .|+++||++|.|+++.
T Consensus 144 ~~~~~~~~-~~~~~Sa~~~~~i~~l 167 (179)
T 2y8e_A 144 RKAKELNV-MFIETSAKAGYNVKQL 167 (179)
T ss_dssp HHHHHHTC-EEEEEBTTTTBSHHHH
T ss_pred HHHHHcCC-eEEEEeCCCCCCHHHH
Confidence 99999997 5778999999999976
No 73
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=5.4e-21 Score=140.62 Aligned_cols=101 Identities=32% Similarity=0.467 Sum_probs=92.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++.|..++..+++++|++|+|||++++.+|..+..|+..+.... .++|++||+||+|+. .+.++.+++
T Consensus 66 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--~~~~~~~~~ 143 (195)
T 1x3s_A 66 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEG 143 (195)
T ss_dssp EEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHH
T ss_pred EEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--ccccCHHHH
Confidence 4799999999999999999999999999999999999999999999988765 689999999999995 467889999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..+++..++ .|+++||+++.||++.
T Consensus 144 ~~~~~~~~~-~~~~~Sa~~~~gi~~l 168 (195)
T 1x3s_A 144 LKFARKHSM-LFIEASAKTCDGVQCA 168 (195)
T ss_dssp HHHHHHTTC-EEEECCTTTCTTHHHH
T ss_pred HHHHHHcCC-EEEEecCCCCCCHHHH
Confidence 999999987 4778999999999976
No 74
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.85 E-value=5.3e-21 Score=143.72 Aligned_cols=102 Identities=21% Similarity=0.369 Sum_probs=91.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||+|++.+..++..+++++|++|+|||++++.||+.+..|+..+.... .+.|++|||||+|+.+ .+.++.+++.
T Consensus 63 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~ 141 (218)
T 4djt_A 63 FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN-RQKISKKLVM 141 (218)
T ss_dssp EEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHH
T ss_pred EEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHH
Confidence 4799999999999999999999999999999999999999999999988776 5699999999999987 7789999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++...+++ |+++||++|.||++.
T Consensus 142 ~~~~~~~~~-~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 142 EVLKGKNYE-YFEISAKTAHNFGLP 165 (218)
T ss_dssp HHTTTCCCE-EEEEBTTTTBTTTHH
T ss_pred HHHHHcCCc-EEEEecCCCCCHHHH
Confidence 999988875 778999999999986
No 75
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.85 E-value=8.3e-21 Score=140.42 Aligned_cols=101 Identities=18% Similarity=0.249 Sum_probs=87.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.+..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ .++.+++
T Consensus 69 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~ 145 (190)
T 1m2o_B 69 FTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAEL 145 (190)
T ss_dssp EEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHH
Confidence 4799999999999999999999999999999999999999999999887653 6899999999999965 6778887
Q ss_pred HHHHHhc-----------CCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRR-----------SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~-----------~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++.... ....|+++||++|.||+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 182 (190)
T 1m2o_B 146 RSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEA 182 (190)
T ss_dssp HHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHH
T ss_pred HHHhCCccccccccccccceEEEEEeECCcCCCHHHH
Confidence 7766542 2235889999999999987
No 76
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=3.5e-21 Score=142.59 Aligned_cols=101 Identities=22% Similarity=0.340 Sum_probs=92.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++. ..++..+++++|++++|||++++.||+.+..|+..+.... +++|++|||||+|+.+ .+.++.+++
T Consensus 78 ~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~ 155 (196)
T 2atv_A 78 MEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTEEG 155 (196)
T ss_dssp EEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG-GCCSCHHHH
T ss_pred EEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc-ccccCHHHH
Confidence 47999999998 7889999999999999999999999999999999888764 6899999999999987 788999999
Q ss_pred HHHHHhcCCCeEEEcccCCcc-hhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQ-EVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~-~v~~~ 104 (170)
..+++.+++ .|+++||++|. ||+++
T Consensus 156 ~~~~~~~~~-~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 156 EKLATELAC-AFYECSACTGEGNITEI 181 (196)
T ss_dssp HHHHHHHTS-EEEECCTTTCTTCHHHH
T ss_pred HHHHHHhCC-eEEEECCCcCCcCHHHH
Confidence 999999987 57789999999 99976
No 77
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.85 E-value=1.4e-20 Score=139.89 Aligned_cols=102 Identities=30% Similarity=0.475 Sum_probs=90.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCCCCCH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTPQVTE 75 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~~v~~ 75 (170)
++||||||++.|..++..+++++|++|+|||++++.+|..+..|+..+.... .++|+++||||+|+.+ +.+..
T Consensus 59 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~ 136 (207)
T 1vg8_A 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN--RQVAT 136 (207)
T ss_dssp EEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC--CCSCH
T ss_pred EEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc--cccCH
Confidence 4799999999999999999999999999999999999999999999887654 4789999999999974 57788
Q ss_pred HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++..++.......|+++||++|.|+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 165 (207)
T 1vg8_A 137 KRAQAWCYSKNNIPYFETSAKEAINVEQA 165 (207)
T ss_dssp HHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred HHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence 89999998444345789999999999976
No 78
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.85 E-value=5.2e-22 Score=147.56 Aligned_cols=102 Identities=35% Similarity=0.530 Sum_probs=84.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++||||||++.|..++..+++++|++|+|||++++.||+.+..|+..+.... .++|++|||||+|+.+ .+.++.+++.
T Consensus 84 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~ 162 (199)
T 3l0i_B 84 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAK 162 (199)
T ss_dssp EEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC---CCCCSCC-C
T ss_pred EEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc-cccCCHHHHH
Confidence 4799999999999999999999999999999999999999999999998776 6899999999999987 7888888899
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++..++++ |+++||+++.||++.
T Consensus 163 ~~~~~~~~~-~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 163 EFADSLGIP-FLETSAKNATNVEQS 186 (199)
T ss_dssp HHHHTTTCC-BCCCCC---HHHHHH
T ss_pred HHHHHcCCe-EEEEECCCCCCHHHH
Confidence 999999986 668999999999976
No 79
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.84 E-value=1.7e-21 Score=139.68 Aligned_cols=100 Identities=16% Similarity=0.377 Sum_probs=81.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.|..++..+++++|++++|||+++++||..+..|+..+.... +++|+++||||+|+.+ ....++.
T Consensus 46 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~ 122 (164)
T 1r8s_A 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN---AMNAAEI 122 (164)
T ss_dssp EEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT---CCCHHHH
T ss_pred EEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC---CCCHHHH
Confidence 4799999999999999999999999999999999999999999999887643 6899999999999976 2333332
Q ss_pred HHH-----HHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENF-----WSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~-----a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
... ++..++ .|+++||++|.||+++
T Consensus 123 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 152 (164)
T 1r8s_A 123 TDKLGLHSLRHRNW-YIQATCATSGDGLYEG 152 (164)
T ss_dssp HHHTTGGGCSSCCE-EEEECBTTTTBTHHHH
T ss_pred HHHhCcccccCccE-EEEEcccCCCcCHHHH
Confidence 221 111222 4889999999999976
No 80
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=5.1e-21 Score=137.64 Aligned_cols=102 Identities=24% Similarity=0.276 Sum_probs=92.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+++|||||++.|..++..+++++|++++|||++++.+|+.+..|+..+.... +++|+++||||+|+.+ .+.++..+
T Consensus 53 ~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~-~~~v~~~~ 131 (172)
T 2erx_A 53 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-SREVQSSE 131 (172)
T ss_dssp EEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-GCCSCHHH
T ss_pred EEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc-ccccCHHH
Confidence 4799999999999999999999999999999999999999999988887654 5899999999999987 77889999
Q ss_pred HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+..++..+++ .|+++||++|.|+++.
T Consensus 132 ~~~~~~~~~~-~~~~~Sa~~~~gi~~l 157 (172)
T 2erx_A 132 AEALARTWKC-AFMETSAKLNHNVKEL 157 (172)
T ss_dssp HHHHHHHHTC-EEEECBTTTTBSHHHH
T ss_pred HHHHHHHhCC-eEEEecCCCCcCHHHH
Confidence 9999999987 4778999999999976
No 81
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.84 E-value=3.5e-20 Score=136.19 Aligned_cols=101 Identities=23% Similarity=0.340 Sum_probs=81.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+.||||||++.|..++..+++++|++++|||++++.+|+.+..|+..+.... .++|+++|+||+|+.. +.+..+++
T Consensus 71 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~ 148 (190)
T 3con_A 71 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQA 148 (190)
T ss_dssp EEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHH
T ss_pred EEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc--ccCCHHHH
Confidence 4699999999999999999999999999999999999999999999987765 4899999999999975 57888999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++++.++++ |+++||+++.|+.++
T Consensus 149 ~~~~~~~~~~-~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 149 HELAKSYGIP-FIETSAKTRQGVEDA 173 (190)
T ss_dssp HHHHHHHTCC-EEECCTTTCTTHHHH
T ss_pred HHHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 9999999985 778999999999976
No 82
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.84 E-value=2.5e-20 Score=132.95 Aligned_cols=101 Identities=24% Similarity=0.368 Sum_probs=92.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+.+|||||++.+..++..+++++|++++|||++++.+++.+..|+..+.... .++|+++|+||+|+.. +.+..+++
T Consensus 53 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~ 130 (166)
T 2ce2_X 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQA 130 (166)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHH
T ss_pred EEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh--cccCHHHH
Confidence 4689999999999999999999999999999999999999999999988775 4899999999999975 56788999
Q ss_pred HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++++.++++ ++++||+++.|+.+.
T Consensus 131 ~~~~~~~~~~-~~~~Sa~~~~gi~~l 155 (166)
T 2ce2_X 131 QDLARSYGIP-YIETSAKTRQGVEDA 155 (166)
T ss_dssp HHHHHHHTCC-EEEECTTTCTTHHHH
T ss_pred HHHHHHcCCe-EEEecCCCCCCHHHH
Confidence 9999999985 778999999999976
No 83
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.84 E-value=1e-20 Score=142.68 Aligned_cols=100 Identities=24% Similarity=0.483 Sum_probs=89.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
++||||+|++.|..++..+++++|++++|||++++.||+.+..|+..+....+++|++|||||+|+.+ .. +. .++..
T Consensus 66 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~-~~-~~~~~ 142 (221)
T 3gj0_A 66 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD-RK-VK-AKSIV 142 (221)
T ss_dssp EEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS-CS-SC-GGGCC
T ss_pred EEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc-cc-cc-HHHHH
Confidence 47999999999999999999999999999999999999999999999998888999999999999976 33 33 26667
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+++..++ .|+++||++|.||+++
T Consensus 143 ~~~~~~~-~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 143 FHRKKNL-QYYDISAKSNYNFEKP 165 (221)
T ss_dssp HHHHHTC-EEEECBGGGTBTTTHH
T ss_pred HHHHcCC-EEEEEeCCCCCCHHHH
Confidence 8888887 5778999999999987
No 84
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.84 E-value=1.5e-20 Score=149.22 Aligned_cols=104 Identities=22% Similarity=0.340 Sum_probs=95.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCC----------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGT---------- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~---------- 69 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+. .|+..+....+++|+++||||+|+.+.
T Consensus 205 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 284 (332)
T 2wkq_A 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEK 284 (332)
T ss_dssp EEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHT
T ss_pred EEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhcccc
Confidence 469999999999999999999999999999999999999997 799998887789999999999998652
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 70 -TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 -~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.++.+++..+++..++..|+++||++|.||++.
T Consensus 285 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 320 (332)
T 2wkq_A 285 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 320 (332)
T ss_dssp TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred ccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHH
Confidence 26799999999999999877899999999999976
No 85
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.83 E-value=1.8e-20 Score=138.31 Aligned_cols=100 Identities=17% Similarity=0.305 Sum_probs=81.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---------CCCeEEEEeeCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---------ENAKIFLCGNKSDLEGTTP 71 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---------~~~pvvlvgnK~Dl~~~~~ 71 (170)
++||||+|++.|..++..+++++|++|+|||++++.||..+..|+..+.... +++|++|||||+|+.+ .
T Consensus 65 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~- 142 (199)
T 4bas_A 65 FTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG-A- 142 (199)
T ss_dssp EEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT-C-
T ss_pred EEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC-C-
Confidence 4799999999999999999999999999999999999999999998887652 2899999999999976 3
Q ss_pred CCCHHHHHH------HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 72 QVTEADMEN------FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 72 ~v~~~~~~~------~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
...++... +++..++ .|+++||++|.||+++
T Consensus 143 -~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l 179 (199)
T 4bas_A 143 -KTAAELVEILDLTTLMGDHPF-VIFASNGLKGTGVHEG 179 (199)
T ss_dssp -CCHHHHHHHHTHHHHHTTSCE-EEEECBTTTTBTHHHH
T ss_pred -CCHHHHHHHhcchhhccCCee-EEEEeeCCCccCHHHH
Confidence 22222211 1133454 5889999999999976
No 86
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=6.3e-20 Score=134.76 Aligned_cols=100 Identities=20% Similarity=0.370 Sum_probs=81.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++.|..++..+++++|++++|||+++++||+.+..|+..+.... .+.|+++||||+|+.+ .++.++.
T Consensus 62 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i 138 (187)
T 1zj6_A 62 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE---CMTVAEI 138 (187)
T ss_dssp EEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT---CCCHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC---CCCHHHH
Confidence 4799999999999999999999999999999999999999999999988763 6899999999999965 4555565
Q ss_pred HHHHHh-----cCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSR-----RSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~-----~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.... .++ .|+++||++|.||++.
T Consensus 139 ~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l 168 (187)
T 1zj6_A 139 SQFLKLTSIKDHQW-HIQACCALTGEGLCQG 168 (187)
T ss_dssp HHHHTGGGCCSSCE-EEEECBTTTTBTHHHH
T ss_pred HHHhChhhhcCCCc-EEEEccCCCCcCHHHH
Confidence 544332 233 5889999999999976
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.83 E-value=1e-20 Score=136.23 Aligned_cols=100 Identities=22% Similarity=0.367 Sum_probs=82.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.|..++..+++++|++++|||++++.||..+..|+..+.... +++|+++|+||+|+.+ . .+.++.
T Consensus 53 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~--~~~~~~ 129 (171)
T 1upt_A 53 FQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ-A--MTSSEM 129 (171)
T ss_dssp EEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT-C--CCHHHH
T ss_pred EEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC-C--CCHHHH
Confidence 4799999999999999999999999999999999999999999998887654 6899999999999976 3 222222
Q ss_pred HH-----HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 EN-----FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~-----~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.. +++..++ .|+++||++|.|+++.
T Consensus 130 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 159 (171)
T 1upt_A 130 ANSLGLPALKDRKW-QIFKTSATKGTGLDEA 159 (171)
T ss_dssp HHHHTGGGCTTSCE-EEEECCTTTCTTHHHH
T ss_pred HHHhCchhccCCce-EEEECcCCCCcCHHHH
Confidence 22 2233344 5889999999999976
No 88
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.83 E-value=4.5e-21 Score=142.27 Aligned_cols=102 Identities=14% Similarity=0.178 Sum_probs=87.3
Q ss_pred CeEEecCCccccccch---hhhccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC------
Q psy17235 1 MQLWDTGGMERVASIT---SSYYKFAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT------ 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~---~~~~~~ad~iilv~D~t~~--~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~------ 69 (170)
++||||+|++.|..+. ..|++++|++|+|||++++ +++..+..|+.++....+++|++|||||+|+.++
T Consensus 71 l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 150 (196)
T 3llu_A 71 FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIET 150 (196)
T ss_dssp EEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH
T ss_pred EEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHH
Confidence 5799999999997776 8999999999999999998 7788888888888766689999999999997541
Q ss_pred CCCCCHHHHHHHHH----hcCCCeEEEcccCCcchhhhH
Q psy17235 70 TPQVTEADMENFWS----RRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 ~~~v~~~~~~~~a~----~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.++.+++..+++ ..++ .|+++||++ .||.++
T Consensus 151 ~~~v~~~~~~~~~~~~~~~~~~-~~~e~Sa~~-~~v~~~ 187 (196)
T 3llu_A 151 QRDIHQRANDDLADAGLEKLHL-SFYLTSIYD-HSIFEA 187 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCE-EEEEECTTS-THHHHH
T ss_pred HhHHHHHHHHHHHHhhhhcCCc-ceEEEEech-hhHHHH
Confidence 35677788888998 5666 578999999 999977
No 89
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.83 E-value=2.8e-21 Score=142.03 Aligned_cols=103 Identities=17% Similarity=0.304 Sum_probs=88.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC---HH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT---EA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~---~~ 76 (170)
+++|||+|++.|..+++.|+++++++++|||++++ .||+.+..|+.++....+++|++|||||+|+.+ .+.++ .+
T Consensus 58 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~ 136 (184)
T 2zej_A 58 LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD-EKQRKACMSK 136 (184)
T ss_dssp EEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC-HHHHHHHHHH
T ss_pred EEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc-chhhHHHHHH
Confidence 47999999999999999999999999999999998 589999999999887767899999999999976 55544 45
Q ss_pred HHHHHHHhcCCC---eEEEcccCCcc-hhhhH
Q psy17235 77 DMENFWSRRSSR---RFKPQEVVEPQ-EVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~~---~~~e~Sa~~~~-~v~~~ 104 (170)
.+..+++.++++ .|+++||+++. ++.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l 168 (184)
T 2zej_A 137 ITKELLNKRGFPAIRDYHFVNATEESDALAKL 168 (184)
T ss_dssp HHHHTTTCTTSCEEEEEEECCTTSCCHHHHHH
T ss_pred HHHHHHHhcCCcchhheEEEecccCchhHHHH
Confidence 567788888886 38899999996 76654
No 90
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.83 E-value=6e-21 Score=154.53 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=89.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~----------~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~ 68 (170)
|+||||+||+.|+.+|.+||++++++|+|||+++ ..+|.....|+..+.... +++|+||+|||+|+..
T Consensus 195 l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 195 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE 274 (353)
T ss_dssp EEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred EEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchh
Confidence 5799999999999999999999999999999999 567999999999988753 7899999999999853
Q ss_pred CCC---------------CCCHHHHHHHHHh----------cCCCeEEEcccCCcchhhhHH
Q psy17235 69 TTP---------------QVTEADMENFWSR----------RSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 69 ~~~---------------~v~~~~~~~~a~~----------~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+ .++.+++..++.. ....+|++|||+++.||.++|
T Consensus 275 -~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF 335 (353)
T 1cip_A 275 -EKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF 335 (353)
T ss_dssp -HHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHH
T ss_pred -hhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHH
Confidence 22 4788999999873 123468899999999999873
No 91
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.83 E-value=7e-21 Score=154.17 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=86.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLD----------NAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t----------~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~ 68 (170)
|+||||+||+.|+.+|.+||++++++|+|||++ +.+||+.+..|+..+.... +++|+||||||+|+..
T Consensus 185 l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 185 YRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFE 264 (354)
T ss_dssp EEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred eEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhh
Confidence 579999999999999999999999999999999 8899999999999988753 7899999999999854
Q ss_pred CCCC--C-------------------CHHHHHHHHHhc--------------C-CCeEEEcccCCcchhhhHH
Q psy17235 69 TTPQ--V-------------------TEADMENFWSRR--------------S-SRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 69 ~~~~--v-------------------~~~~~~~~a~~~--------------~-~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+. + +.+++..++... + ..++++|||+++.||.++|
T Consensus 265 -~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF 336 (354)
T 2xtz_A 265 -KKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTF 336 (354)
T ss_dssp -HHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred -hhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHH
Confidence 221 1 256777775431 2 2346899999999999873
No 92
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.8e-20 Score=137.32 Aligned_cols=101 Identities=24% Similarity=0.257 Sum_probs=90.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
++||||||++.|..++..+++++|++++|||++++.+|+.+..|+..+.... +++|+++||||+|+.. +.++.++
T Consensus 58 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~ 135 (199)
T 2gf0_A 58 LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDTRE 135 (199)
T ss_dssp EEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CSSCHHH
T ss_pred EEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cccCHHH
Confidence 4799999999999999999999999999999999999999998987776653 5789999999999975 6788899
Q ss_pred HHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+..++..+++ .|+++||++|.||++.
T Consensus 136 ~~~~~~~~~~-~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 136 AQAVAQEWKC-AFMETSAKMNYNVKEL 161 (199)
T ss_dssp HHHHHHHHTC-EEEECBTTTTBSHHHH
T ss_pred HHHHHHHhCC-eEEEEecCCCCCHHHH
Confidence 9999999997 4778999999999976
No 93
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.83 E-value=9.6e-20 Score=134.08 Aligned_cols=101 Identities=19% Similarity=0.311 Sum_probs=85.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC----CCCeEEEEeeCCCCCCCCCCCCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA----ENAKIFLCGNKSDLEGTTPQVTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~----~~~pvvlvgnK~Dl~~~~~~v~~~ 76 (170)
++||||+|++.|..++..+++++|++|+|||++++.||+.+..|+..+.... .++|+++||||+|+.+ .++.+
T Consensus 69 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~ 145 (190)
T 2h57_A 69 FTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD---AVTSV 145 (190)
T ss_dssp EEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT---CCCHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc---CCCHH
Confidence 4799999999999999999999999999999999999999999999887654 4799999999999965 55667
Q ss_pred HHHHHHH--hcC--CCeEEEcccCCcchhhhH
Q psy17235 77 DMENFWS--RRS--SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~--~~~--~~~~~e~Sa~~~~~v~~~ 104 (170)
+..++.. ... ...|+++||++|.||++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 146 KVSQLLCLENIKDKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp HHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred HHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence 7766663 211 225889999999999976
No 94
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.72 E-value=3.9e-22 Score=148.66 Aligned_cols=104 Identities=21% Similarity=0.314 Sum_probs=92.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhCCCCeEEEEeeCCCCCCCC---------
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS-QHLLEIVTYAENAKIFLCGNKSDLEGTT--------- 70 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~-~~~~~i~~~~~~~pvvlvgnK~Dl~~~~--------- 70 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+. .|+..+....+++|+++||||+|+.+..
T Consensus 80 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 159 (204)
T 3th5_A 80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEK 159 (204)
Confidence 469999999999999999999999999999999999999997 8988887766789999999999997621
Q ss_pred --CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 71 --PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 --~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+.++.+++..+++..++..|+++||++|.||++.
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l 195 (204)
T 3th5_A 160 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 195 (204)
Confidence 2677888999999999856789999999999976
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.82 E-value=1.2e-19 Score=132.74 Aligned_cols=100 Identities=20% Similarity=0.376 Sum_probs=84.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||+|++.|..++..+++++|++++|||++++.||+.+..|+..+.... .++|+++||||+|+.+ .++.++.
T Consensus 67 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i 143 (181)
T 2h17_A 67 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE---CMTVAEI 143 (181)
T ss_dssp EEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT---CCCHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc---CCCHHHH
Confidence 4799999999999999999999999999999999999999999998887653 7899999999999965 4455555
Q ss_pred HHHHH-----hcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWS-----RRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~-----~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+... ..++ .|+++||++|.||+++
T Consensus 144 ~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 144 SQFLKLTSIKDHQW-HIQACCALTGEGLCQG 173 (181)
T ss_dssp HHHTTGGGCCSSCE-EEEECBTTTTBTHHHH
T ss_pred HHHhCcccccCCce-EEEEccCCCCcCHHHH
Confidence 54432 1222 5889999999999976
No 96
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.82 E-value=8.8e-20 Score=133.79 Aligned_cols=100 Identities=18% Similarity=0.345 Sum_probs=81.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.|..++..|++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ . .+.++.
T Consensus 62 l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~--~~~~~~ 138 (181)
T 1fzq_A 62 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT-A--APASEI 138 (181)
T ss_dssp EEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT-C--CCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc-C--CCHHHH
Confidence 4799999999999999999999999999999999999999999998876542 6899999999999976 3 233333
Q ss_pred HHHH-----HhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFW-----SRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a-----~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.. ...++ .|+++||++|.||+++
T Consensus 139 ~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l 168 (181)
T 1fzq_A 139 AEGLNLHTIRDRVW-QIQSCSALTGEGVQDG 168 (181)
T ss_dssp HHHTTGGGCCSSCE-EEEECCTTTCTTHHHH
T ss_pred HHHhCchhccCCce-EEEEccCCCCCCHHHH
Confidence 3221 11222 5889999999999976
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.82 E-value=1.3e-20 Score=138.46 Aligned_cols=100 Identities=20% Similarity=0.342 Sum_probs=81.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.+..++..+++++|++++|||+++++||..+..|+..+.... ++.|+++||||+|+.+ . ...++.
T Consensus 68 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~--~~~~~~ 144 (189)
T 2x77_A 68 FEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD-A--ASEAEI 144 (189)
T ss_dssp EEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT-C--CCHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC-C--CCHHHH
Confidence 4799999999999999999999999999999999999999999998887654 6899999999999976 2 233332
Q ss_pred HHH-----HHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENF-----WSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~-----a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
... +...++ .|+++||+++.||++.
T Consensus 145 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 174 (189)
T 2x77_A 145 AEQLGVSSIMNRTW-TIVKSSSKTGDGLVEG 174 (189)
T ss_dssp HHHTTGGGCCSSCE-EEEECCTTTCTTHHHH
T ss_pred HHHhChhhccCCce-EEEEccCCCccCHHHH
Confidence 221 222333 5889999999999976
No 98
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.82 E-value=8.9e-20 Score=133.55 Aligned_cols=100 Identities=17% Similarity=0.362 Sum_probs=83.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|+++||||+|+.+ . ...++.
T Consensus 64 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~--~~~~~~ 140 (186)
T 1ksh_A 64 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG-A--LSCNAI 140 (186)
T ss_dssp EEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT-C--CCHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC-C--CCHHHH
Confidence 4799999999999999999999999999999999999999999998887653 6899999999999976 2 344444
Q ss_pred HHHHH-----hcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWS-----RRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~-----~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+... ..++ .|+++||++|.|+++.
T Consensus 141 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 170 (186)
T 1ksh_A 141 QEALELDSIRSHHW-RIQGCSAVTGEDLLPG 170 (186)
T ss_dssp HHHTTGGGCCSSCE-EEEECCTTTCTTHHHH
T ss_pred HHHhChhhccCCce-EEEEeeCCCCCCHHHH
Confidence 33322 2233 5889999999999976
No 99
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.82 E-value=1.3e-20 Score=139.53 Aligned_cols=100 Identities=13% Similarity=0.344 Sum_probs=76.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++.|..++..+++++|++++|||++++.||+.+..|+..+.... +++|++|||||+|+.+ . ...++.
T Consensus 75 ~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~-~--~~~~~i 151 (192)
T 2b6h_A 75 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN-A--MPVSEL 151 (192)
T ss_dssp EEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT-C--CCHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC-C--CCHHHH
Confidence 4799999999999999999999999999999999999999999999887654 6899999999999976 2 333332
Q ss_pred HHH-----HHhcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENF-----WSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~-----a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
... +...++ .|+++||++|.||+++
T Consensus 152 ~~~~~~~~~~~~~~-~~~~~SA~~g~gi~~l 181 (192)
T 2b6h_A 152 TDKLGLQHLRSRTW-YVQATCATQGTGLYDG 181 (192)
T ss_dssp HHHTTGGGCSSCCE-EEEECBTTTTBTHHHH
T ss_pred HHHhCcccccCCce-EEEECcCCCcCCHHHH
Confidence 221 111222 4789999999999976
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=1.7e-19 Score=131.42 Aligned_cols=101 Identities=17% Similarity=0.328 Sum_probs=80.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
+++|||||++.+..++..+++++|++++|||++++.||+.+..|+..+.... .+.|+++|+||+|+.+ ..+.++.
T Consensus 64 ~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~i 140 (183)
T 1moz_A 64 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG---ALSASEV 140 (183)
T ss_dssp EEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT---CCCHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC---CCCHHHH
Confidence 4799999999999999999999999999999999999999999999887663 7899999999999976 3455555
Q ss_pred HHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSS----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~----~~~~e~Sa~~~~~v~~~ 104 (170)
......... ..|+++||++|.||++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 170 (183)
T 1moz_A 141 SKELNLVELKDRSWSIVASSAIKGEGITEG 170 (183)
T ss_dssp HHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred HHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 444332211 25889999999999976
No 101
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.81 E-value=2.1e-20 Score=153.42 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=85.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~----------~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~ 68 (170)
|+||||+||+.|+.+|..||++++++|+|||+++ .+||+.+..|+..+.... +++|+||||||+|+..
T Consensus 219 l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 219 FHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 298 (402)
T ss_dssp EEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHH
T ss_pred ceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhh
Confidence 5799999999999999999999999999999999 899999999999998763 7899999999999854
Q ss_pred CCCC---C---------------------------CHHHHHHHH-----Hhc-------CCCeEEEcccCCcchhhhHH
Q psy17235 69 TTPQ---V---------------------------TEADMENFW-----SRR-------SSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 69 ~~~~---v---------------------------~~~~~~~~a-----~~~-------~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+. + +.+++..|+ +.+ ...++.+|||+++.||.++|
T Consensus 299 -~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF 376 (402)
T 1azs_C 299 -EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 376 (402)
T ss_dssp -HHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred -hhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence 322 2 145666664 221 12367899999999999874
No 102
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.80 E-value=3.6e-20 Score=148.43 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=87.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLD----------NAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t----------~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~ 68 (170)
|+||||+||++|+++|.+||++++|+|+|||++ +.++|.....|+..+.... +++|++|+|||+|+..
T Consensus 169 l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 169 FRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLE 248 (327)
T ss_dssp EEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHH
T ss_pred eEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhh
Confidence 579999999999999999999999999999654 7788998889999887654 7899999999999865
Q ss_pred CCC----------------CCCHHHHHHHH----------HhcCCCeEEEcccCCcchhhhHH
Q psy17235 69 TTP----------------QVTEADMENFW----------SRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 69 ~~~----------------~v~~~~~~~~a----------~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+ .++.+++..+. ...++ ++.+|||+++.||..+|
T Consensus 249 -~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF 309 (327)
T 3ohm_A 249 -EKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVF 309 (327)
T ss_dssp -HHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHH
T ss_pred -hhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHH
Confidence 33 57889998884 33443 67889999999999773
No 103
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.80 E-value=5.1e-19 Score=130.21 Aligned_cols=100 Identities=19% Similarity=0.331 Sum_probs=81.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++.|..++..+++++|++|+|||++++.+|+.+..|+..+.... .++|++|||||+|+.+ ....++.
T Consensus 69 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~ 145 (188)
T 1zd9_A 69 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG---ALDEKEL 145 (188)
T ss_dssp EEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHH
T ss_pred EEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc---CCCHHHH
Confidence 4799999999999999999999999999999999999999999998887653 6899999999999976 2333332
Q ss_pred HHHHH-----hcCCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWS-----RRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~-----~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..... ..+ ..|+++||++|.||++.
T Consensus 146 ~~~~~~~~~~~~~-~~~~~~SA~~g~gv~~l 175 (188)
T 1zd9_A 146 IEKMNLSAIQDRE-ICCYSISCKEKDNIDIT 175 (188)
T ss_dssp HHHTTGGGCCSSC-EEEEECCTTTCTTHHHH
T ss_pred HHHhChhhhccCC-eeEEEEECCCCCCHHHH
Confidence 22211 122 24789999999999976
No 104
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.79 E-value=8.8e-20 Score=148.16 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=81.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~----------~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~ 68 (170)
++|||||||+.|+.+|.+||++++++|+|||+++ .++|.....|+..+.... +++|+||+|||+|+..
T Consensus 203 l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 203 FKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE 282 (362)
T ss_dssp EEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred EEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhh
Confidence 5799999999999999999999999999999999 789999999999988753 7899999999999853
Q ss_pred CCC----------------CCCHHHHHHHHHh----------cCCCeEEEcccCCcchhhhHH
Q psy17235 69 TTP----------------QVTEADMENFWSR----------RSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 69 ~~~----------------~v~~~~~~~~a~~----------~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+ .++.+++..++.. ....+|++|||+++.||.++|
T Consensus 283 -~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF 344 (362)
T 1zcb_A 283 -EKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF 344 (362)
T ss_dssp -HHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred -hhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHH
Confidence 22 3788888887721 112368899999999999873
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.78 E-value=3e-19 Score=141.91 Aligned_cols=103 Identities=18% Similarity=0.317 Sum_probs=87.6
Q ss_pred CeEEecCCcccc-----ccchhhhccCCcEEEEEEeCCChhhHHHHHHHH---HHHHhhCCCCeEEEEeeCCCCCCC-CC
Q psy17235 1 MQLWDTGGMERV-----ASITSSYYKFAEAAILVFSLDNAASFHVLSQHL---LEIVTYAENAKIFLCGNKSDLEGT-TP 71 (170)
Q Consensus 1 l~iwDt~G~e~~-----~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~---~~i~~~~~~~pvvlvgnK~Dl~~~-~~ 71 (170)
++||||||++.| ..++..+++++|++|+|||++++.||+.+..|. ..+....+++|++|||||+|+.+. .+
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r 133 (307)
T 3r7w_A 54 LNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKR 133 (307)
T ss_dssp EEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHH
T ss_pred EEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhh
Confidence 479999999998 789999999999999999999999999997764 445555579999999999998641 23
Q ss_pred C----CCHHHHHHHHHhcCC--CeEEEcccCCcchhhhH
Q psy17235 72 Q----VTEADMENFWSRRSS--RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 72 ~----v~~~~~~~~a~~~~~--~~~~e~Sa~~~~~v~~~ 104 (170)
. +..+++.++++.+|+ ..|+++||++ .++.++
T Consensus 134 ~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~ 171 (307)
T 3r7w_A 134 EELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKA 171 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHH
Confidence 3 777889999999985 5788999999 788877
No 106
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=139.34 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=81.6
Q ss_pred cCCccccccchhhhcc---------------------CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhC--CCCeEEEE
Q psy17235 6 TGGMERVASITSSYYK---------------------FAEAAILVFSLDNA--ASFHVLSQHLLEIVTYA--ENAKIFLC 60 (170)
Q Consensus 6 t~G~e~~~~~~~~~~~---------------------~ad~iilv~D~t~~--~Sf~~~~~~~~~i~~~~--~~~pvvlv 60 (170)
++|+++|..++..||+ ++|++|+|||++++ .||+.+..|+..+.... +++|++||
T Consensus 125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV 204 (255)
T 3c5h_A 125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVV 204 (255)
T ss_dssp HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 8899999999999998 89999999999999 99999999999987762 78999999
Q ss_pred eeCCCCCCCCCCCCHHHHHHHHHhc-CCCeEEEcccCCcchhhhH
Q psy17235 61 GNKSDLEGTTPQVTEADMENFWSRR-SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 61 gnK~Dl~~~~~~v~~~~~~~~a~~~-~~~~~~e~Sa~~~~~v~~~ 104 (170)
|||+|+.+ .+.+ +++..++... ++ .|+++||++|.||+++
T Consensus 205 ~NK~Dl~~-~~~v--~~~~~~~~~~~~~-~~~e~SAk~g~gv~el 245 (255)
T 3c5h_A 205 LTKCDEGV-ERYI--RDAHTFALSKKNL-QVVETSARSNVNVDLA 245 (255)
T ss_dssp EECGGGBC-HHHH--HHHHHHHHTSSSC-CEEECBTTTTBSHHHH
T ss_pred EEcccccc-cHHH--HHHHHHHHhcCCC-eEEEEECCCCCCHHHH
Confidence 99999976 5555 5788888774 55 5779999999999976
No 107
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.77 E-value=5.2e-18 Score=125.95 Aligned_cols=102 Identities=33% Similarity=0.513 Sum_probs=92.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
+++|||+|++.|..++..++++++++++|||++++.+|+.+..|+..+.... .+.|+++||||+|+.+ .+.++.+++.
T Consensus 56 ~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~ 134 (199)
T 2f9l_A 56 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEAR 134 (199)
T ss_dssp EEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHH
T ss_pred EEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccCcCHHHHH
Confidence 3689999999999999999999999999999999999999999998887655 6799999999999987 7888999999
Q ss_pred HHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 NFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++...++. |+++||+++.|+.+.
T Consensus 135 ~l~~~~~~~-~~d~Sal~~~~i~~l 158 (199)
T 2f9l_A 135 AFAEKNNLS-FIETSALDSTNVEEA 158 (199)
T ss_dssp HHHHHTTCE-EEECCTTTCTTHHHH
T ss_pred HHHHHcCCe-EEEEeCCCCCCHHHH
Confidence 999999985 667999999999987
No 108
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.77 E-value=4.3e-19 Score=132.88 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=55.6
Q ss_pred CeEEecCCcccccc-chhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhh----CCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVAS-ITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTY----AENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~-~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~----~~~~pvvlvgnK~Dl~~ 68 (170)
++||||||++.|.. ++..|++++|++|+|||+++.. ++..+..|+..+... .+++|++|||||+|+..
T Consensus 56 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 56 LTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp EEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred EEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 47999999999988 8999999999999999999964 566665554443322 25799999999999976
No 109
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.77 E-value=2e-19 Score=144.64 Aligned_cols=105 Identities=19% Similarity=0.173 Sum_probs=86.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLD----------NAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t----------~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~ 68 (170)
|+||||+||++|+.+|.+||++++|+|+|||++ +.++|.....|+..+.... +++|++|+|||+|+..
T Consensus 163 l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 163 FHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp EEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred eccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence 589999999999999999999999999999999 7899999999999887654 7899999999999853
Q ss_pred C--------------CCCCCHHHHHHHHHhcC--------------------------CCeEEEcccCCcchhhhHH
Q psy17235 69 T--------------TPQVTEADMENFWSRRS--------------------------SRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 69 ~--------------~~~v~~~~~~~~a~~~~--------------------------~~~~~e~Sa~~~~~v~~~~ 105 (170)
. ....+.+++..+....- ..++.+|||+++.||..+|
T Consensus 243 eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 243 EKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 1 01135667766553321 2478899999999999874
No 110
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.76 E-value=1.1e-18 Score=138.48 Aligned_cols=98 Identities=13% Similarity=0.100 Sum_probs=83.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++|||| |++|..+++.|++++|++|+|||++++. ||+.+..|+..+.. .++|++|||||+|+.+ .+.+ +++.
T Consensus 65 ~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~--~~~piilv~NK~DL~~-~~~v--~~~~ 137 (301)
T 1u0l_A 65 GVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYD-EDDL--RKVR 137 (301)
T ss_dssp EEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCC-HHHH--HHHH
T ss_pred EEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEeHHHcCC-chhH--HHHH
Confidence 479999 9999999999999999999999999997 79999999988765 4899999999999976 4443 5577
Q ss_pred HHHHhcCC-CeEEEcccCCcchhhhHH
Q psy17235 80 NFWSRRSS-RRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 80 ~~a~~~~~-~~~~e~Sa~~~~~v~~~~ 105 (170)
+++..++. ..|+++||++|.||++++
T Consensus 138 ~~~~~~~~~~~~~~~SAktg~gv~~lf 164 (301)
T 1u0l_A 138 ELEEIYSGLYPIVKTSAKTGMGIEELK 164 (301)
T ss_dssp HHHHHHTTTSCEEECCTTTCTTHHHHH
T ss_pred HHHHHHhhhCcEEEEECCCCcCHHHHH
Confidence 78877762 257789999999999874
No 111
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=136.99 Aligned_cols=98 Identities=15% Similarity=0.365 Sum_probs=75.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
++||||||++.|..++..+++++|++|+|||++++.+|..+..|+..+.... +++|++|||||+|+.+ . ...++.
T Consensus 211 l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~-~--~~~~~i 287 (329)
T 3o47_A 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN-A--MNAAEI 287 (329)
T ss_dssp EEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT-C--CCHHHH
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc-c--cCHHHH
Confidence 4799999999999999999999999999999999999999998888876554 6899999999999976 2 233332
Q ss_pred HHHHHhcCC-------CeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRSS-------RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~~-------~~~~e~Sa~~~~~v~~~ 104 (170)
....+. ..|+++||++|.||++.
T Consensus 288 ---~~~~~~~~~~~~~~~~~~vSAk~g~gi~el 317 (329)
T 3o47_A 288 ---TDKLGLHSLRHRNWYIQATCATSGDGLYEG 317 (329)
T ss_dssp ---HHHHTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred ---HHHhchhhhhcCCCEEEEEECCCCcCHHHH
Confidence 222222 24889999999999976
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.74 E-value=1.1e-17 Score=140.42 Aligned_cols=101 Identities=19% Similarity=0.357 Sum_probs=82.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
|+||||+|++.|..++..+++++|++|+|||++++.+|..+..|+..+.... .++|+||||||+|+.+ .++.++.
T Consensus 368 ~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~---~~~~~~~ 444 (497)
T 3lvq_E 368 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---AMKPHEI 444 (497)
T ss_dssp EEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS---CCCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc---CCCHHHH
Confidence 4799999999999999999999999999999999999999999999887654 6899999999999975 3344433
Q ss_pred HHHHHhc----CCCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRR----SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~----~~~~~~e~Sa~~~~~v~~~ 104 (170)
....... ....|+++||++|.||++.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 474 (497)
T 3lvq_E 445 QEKLGLTRIRDRNWYVQPSCATSGDGLYEG 474 (497)
T ss_dssp HHHTTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred HHHhchhhhhcCCeEEEEEECCCCCCHHHH
Confidence 3221111 1124889999999999976
No 113
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.73 E-value=6.6e-17 Score=122.53 Aligned_cols=102 Identities=15% Similarity=0.217 Sum_probs=76.9
Q ss_pred CeEEecCCc------cc----cccchhhhccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGM------ER----VASITSSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~------e~----~~~~~~~~~~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
++||||||+ +. +..+ ..++..+|++|+|||++++.||.. ...|+..+....+++|+++||||+|+.+
T Consensus 78 ~~l~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 78 YQIIDTPGLLDRAFENRNTIEMTTI-TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp EEEEECTTTTTSCGGGCCHHHHHHH-HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred EEEEECCCCcCcccchhhhHHHHHH-HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 479999999 44 3223 345789999999999999988752 3467777766556899999999999987
Q ss_pred CCCCCCHH---HHHHHHHhcC-CCeEEEcccCCcchhhhH
Q psy17235 69 TTPQVTEA---DMENFWSRRS-SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 69 ~~~~v~~~---~~~~~a~~~~-~~~~~e~Sa~~~~~v~~~ 104 (170)
.+.++.+ .+..++...+ ...|+++||++|.||++.
T Consensus 157 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 195 (228)
T 2qu8_A 157 -MDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQA 195 (228)
T ss_dssp ---CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHH
T ss_pred -chhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHH
Confidence 6777765 4667777766 135889999999999986
No 114
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.72 E-value=4.8e-17 Score=120.25 Aligned_cols=101 Identities=33% Similarity=0.524 Sum_probs=91.6
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
++|||+|++++..++..++++++++++|||+++..+|+.+..|+..+.... .+.|+++++||+|+.+ .+.++.+++..
T Consensus 81 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~ 159 (191)
T 1oix_A 81 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARA 159 (191)
T ss_dssp EEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHH
T ss_pred EEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHH
Confidence 579999999999999999999999999999999999999999998887654 6789999999999987 77888999999
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++...++. |+++||+++.++.+.
T Consensus 160 l~~~~~~~-~ld~Sald~~~v~~l 182 (191)
T 1oix_A 160 FAEKNGLS-FIETSALDSTNVEAA 182 (191)
T ss_dssp HHHHTTCE-EEECCTTTCTTHHHH
T ss_pred HHHHcCCE-EEEEeCCCCCCHHHH
Confidence 99999884 667999999999976
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.71 E-value=5.4e-18 Score=123.97 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=83.7
Q ss_pred CeEEecCC-----------ccccccchhhhccC-CcEEEEEEeCCChhhHHHH-HHHHHH--------HHhhC--CCCeE
Q psy17235 1 MQLWDTGG-----------MERVASITSSYYKF-AEAAILVFSLDNAASFHVL-SQHLLE--------IVTYA--ENAKI 57 (170)
Q Consensus 1 l~iwDt~G-----------~e~~~~~~~~~~~~-ad~iilv~D~t~~~Sf~~~-~~~~~~--------i~~~~--~~~pv 57 (170)
+++||||| ++.|..++..|+++ ++++++||+++|+.||..+ ..|... +.... .++|+
T Consensus 46 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi 125 (190)
T 2cxx_A 46 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT 125 (190)
T ss_dssp EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCce
Confidence 47999999 78888999999998 9999999999999999887 677653 22222 68999
Q ss_pred EEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCe------EEEcccCCcchhhhH
Q psy17235 58 FLCGNKSDLEGTTPQVTEADMENFWSRRSSRR------FKPQEVVEPQEVVEA 104 (170)
Q Consensus 58 vlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~------~~e~Sa~~~~~v~~~ 104 (170)
++||||+|+.. .+ .+++..+++.++.++ |+++||++|.||+++
T Consensus 126 ilv~nK~Dl~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 174 (190)
T 2cxx_A 126 IVAVNKLDKIK-NV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERL 174 (190)
T ss_dssp EEEEECGGGCS-CH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHH
T ss_pred EEEeehHhccC-cH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHH
Confidence 99999999976 33 677889999999863 789999999999976
No 116
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.71 E-value=1e-17 Score=120.92 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=77.1
Q ss_pred CeEEecCCccccc------cchhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVA------SITSSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~------~~~~~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+++|||||++.|. .+...|++ ++|++++|||.++.++ ...|+..+.. .+.|+++||||+|+.. .+.
T Consensus 52 l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~--~~~p~ilv~nK~Dl~~-~~~ 125 (165)
T 2wji_A 52 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLME--MGANLLLALNKMDLAK-SLG 125 (165)
T ss_dssp EEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHH--TTCCEEEEEECHHHHH-HTT
T ss_pred EEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHh--cCCCEEEEEEchHhcc-ccC
Confidence 4799999999875 45577776 8999999999998654 3457777765 3799999999999865 455
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++. ++..+++.++++ |+++||++|.||++.
T Consensus 126 ~~~-~~~~~~~~~~~~-~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 126 IEI-DVDKLEKILGVK-VVPLSAAKKMGIEEL 155 (165)
T ss_dssp CCC-CHHHHHHHHTSC-EEECBGGGTBSHHHH
T ss_pred hhh-HHHHHHHHhCCC-EEEEEcCCCCCHHHH
Confidence 553 477888888874 778999999999976
No 117
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.70 E-value=1.1e-16 Score=115.84 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=70.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
+++|||||++.|..++..++.++|++++|||++++ .+++.+ ..+.. .++|+++||||+|+.+ . ..++
T Consensus 57 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l----~~~~~--~~~p~ilv~nK~Dl~~-~---~~~~ 126 (178)
T 2lkc_A 57 ITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NHAKA--ANVPIIVAINKMDKPE-A---NPDR 126 (178)
T ss_dssp EEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH----HHHGG--GSCCEEEEEETTTSSC-S---CHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHHh--CCCCEEEEEECccCCc-C---CHHH
Confidence 46999999999999999999999999999999984 444333 22221 4799999999999975 2 3334
Q ss_pred HHHHHHhcCC--------CeEEEcccCCcchhhhH
Q psy17235 78 MENFWSRRSS--------RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 78 ~~~~a~~~~~--------~~~~e~Sa~~~~~v~~~ 104 (170)
........+. ..|+++||++|.||++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 161 (178)
T 2lkc_A 127 VMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHL 161 (178)
T ss_dssp HHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHH
T ss_pred HHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHH
Confidence 3333333321 36889999999999976
No 118
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=1.2e-17 Score=125.21 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=77.0
Q ss_pred CeEEecCCccccccchhhhccC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh-----CCCCeEEEEeeCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKF----AEAAILVFSLD-NAASFHVLSQHLLEIVTY-----AENAKIFLCGNKSDLEGTT 70 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~----ad~iilv~D~t-~~~Sf~~~~~~~~~i~~~-----~~~~pvvlvgnK~Dl~~~~ 70 (170)
+++|||||++.+..++..|+++ +|++|+|||++ ++.+|..+..|+.++... .+++|+++|+||+|+.. .
T Consensus 57 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~ 135 (218)
T 1nrj_B 57 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT-A 135 (218)
T ss_dssp CEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT-C
T ss_pred EEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc-c
Confidence 5799999999999999999988 99999999999 999999999999888654 26899999999999987 5
Q ss_pred CCCC------HHHHHHHHHhcCCCeEEEcccCCcchh
Q psy17235 71 PQVT------EADMENFWSRRSSRRFKPQEVVEPQEV 101 (170)
Q Consensus 71 ~~v~------~~~~~~~a~~~~~~~~~e~Sa~~~~~v 101 (170)
+.++ .+++..++...++ .|+++||++|.+.
T Consensus 136 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 136 RPPSKIKDALESEIQKVIERRKK-SLNEVERKINEED 171 (218)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH-HHHC---------
T ss_pred CCHHHHHHHHHHHHHHHHHHHhc-ccccccccccccc
Confidence 5555 5667888887776 4678999998764
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.68 E-value=9.1e-17 Score=136.24 Aligned_cols=99 Identities=15% Similarity=0.244 Sum_probs=84.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
++||||||++.|..++..+++++|++|+|||+++. +.+..|+..+..+.++.|+||||||+|+.. .+.++.+++..
T Consensus 100 ~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~-~~~v~~~~~~~ 175 (535)
T 3dpu_A 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENP-SYNIEQKKINE 175 (535)
T ss_dssp EEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCT-TCCCCHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCccc-ccccCHHHHHH
Confidence 47999999999999999999999999999999765 456789999988888899999999999988 78889999999
Q ss_pred HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++...+++ |+++||++|.||++.
T Consensus 176 ~~~~~~~~-~~~vSA~~g~gi~eL 198 (535)
T 3dpu_A 176 RFPAIENR-FHRISCKNGDGVESI 198 (535)
T ss_dssp HCGGGTTC-EEECCC-----CTTH
T ss_pred HHHhcCCc-eEEEecCcccCHHHH
Confidence 99999885 778999999999987
No 120
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.65 E-value=1.3e-16 Score=113.53 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=71.6
Q ss_pred CeEEecCCccc-------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC
Q psy17235 1 MQLWDTGGMER-------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV 73 (170)
Q Consensus 1 l~iwDt~G~e~-------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v 73 (170)
+.+|||||++. +...+..+++++|++++|||++++.+... .|+..+... .++|+++||||+|+.+ .
T Consensus 51 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~-~~~p~ilv~nK~Dl~~-~--- 123 (161)
T 2dyk_A 51 FLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR-KGKPVILVATKVDDPK-H--- 123 (161)
T ss_dssp EEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH-HTCCEEEEEECCCSGG-G---
T ss_pred EEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh-cCCCEEEEEECccccc-c---
Confidence 46999999987 34566778999999999999999755432 233222222 4799999999999976 2
Q ss_pred CHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 74 TEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++.+++ .+++..|+++||++|.|+++.
T Consensus 124 -~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l 152 (161)
T 2dyk_A 124 -ELYLGPLY-GLGFGDPIPTSSEHARGLEEL 152 (161)
T ss_dssp -GGGCGGGG-GGSSCSCEECBTTTTBSHHHH
T ss_pred -hHhHHHHH-hCCCCCeEEEecccCCChHHH
Confidence 24455566 678766889999999999976
No 121
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.64 E-value=4.1e-16 Score=114.58 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=74.2
Q ss_pred CeEEecCC----------ccccccchhhhccCC---cEEEEEEeCCChhhHHHHH--HHHHHHHhhCCCCeEEEEeeCCC
Q psy17235 1 MQLWDTGG----------MERVASITSSYYKFA---EAAILVFSLDNAASFHVLS--QHLLEIVTYAENAKIFLCGNKSD 65 (170)
Q Consensus 1 l~iwDt~G----------~e~~~~~~~~~~~~a---d~iilv~D~t~~~Sf~~~~--~~~~~i~~~~~~~pvvlvgnK~D 65 (170)
+.+||||| ++.|..++..|++++ |++++|||++++.++.... .|+.. .++|+++|+||+|
T Consensus 71 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~D 145 (195)
T 1svi_A 71 LHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKAD 145 (195)
T ss_dssp EEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGG
T ss_pred EEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcc
Confidence 47999999 888888999999887 9999999999998887643 34332 5799999999999
Q ss_pred CCCCCCCCCH--HHHHH-HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 66 LEGTTPQVTE--ADMEN-FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 66 l~~~~~~v~~--~~~~~-~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+.+ .+.+.. +++.+ ++. .+...|+++||++|.||++.
T Consensus 146 l~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l 185 (195)
T 1svi_A 146 KIP-KGKWDKHAKVVRQTLNI-DPEDELILFSSETKKGKDEA 185 (195)
T ss_dssp GSC-GGGHHHHHHHHHHHHTC-CTTSEEEECCTTTCTTHHHH
T ss_pred cCC-hHHHHHHHHHHHHHHcc-cCCCceEEEEccCCCCHHHH
Confidence 976 444433 33333 322 22346889999999999976
No 122
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.62 E-value=3.1e-16 Score=114.65 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=77.4
Q ss_pred CeEEecCCccccc------cchhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVA------SITSSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~------~~~~~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+++|||||++.|. .++..|++ .+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.. .+.
T Consensus 56 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~--~~~piilv~nK~Dl~~-~~~ 129 (188)
T 2wjg_A 56 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLAK-SLG 129 (188)
T ss_dssp EEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT--TTCCEEEEEECHHHHH-HTT
T ss_pred EEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh--cCCCEEEEEEhhhccc-ccc
Confidence 4799999999885 46777775 5999999999875 5666778887765 4799999999999876 455
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+. .++..+++.++++ |+++||+++.||++.
T Consensus 130 ~~-~~~~~~~~~~~~~-~~~~Sa~~~~~v~~l 159 (188)
T 2wjg_A 130 IE-IDVDKLEKILGVK-VVPLSAAKKMGIEEL 159 (188)
T ss_dssp CC-CCHHHHHHHHTSC-EEECBGGGTBSHHHH
T ss_pred ch-HHHHHHHHHhCCC-eEEEEecCCCCHHHH
Confidence 55 4677888888874 778999999999976
No 123
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.61 E-value=8.1e-16 Score=112.59 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=77.7
Q ss_pred CeEEecCC----------ccccccchhhhccCC---cEEEEEEeCCChhhH--HHHHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235 1 MQLWDTGG----------MERVASITSSYYKFA---EAAILVFSLDNAASF--HVLSQHLLEIVTYAENAKIFLCGNKSD 65 (170)
Q Consensus 1 l~iwDt~G----------~e~~~~~~~~~~~~a---d~iilv~D~t~~~Sf--~~~~~~~~~i~~~~~~~pvvlvgnK~D 65 (170)
+.+||||| ++.|..++..|++++ |++++|+|.++..+. ..+..|+... ++|+++||||+|
T Consensus 70 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~D 144 (195)
T 3pqc_A 70 YYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMD 144 (195)
T ss_dssp EEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGG
T ss_pred EEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChh
Confidence 46899999 788888999998877 999999999886443 3344555432 799999999999
Q ss_pred CCCC-CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 66 LEGT-TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 66 l~~~-~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+.+. .+.+..+++..++...+...|+++||++|.||++.
T Consensus 145 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 184 (195)
T 3pqc_A 145 KVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISEL 184 (195)
T ss_dssp GSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHH
T ss_pred cCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHH
Confidence 8651 23455567778888767667889999999999976
No 124
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.61 E-value=1.7e-16 Score=115.49 Aligned_cols=94 Identities=12% Similarity=0.144 Sum_probs=70.5
Q ss_pred CeEEecCCccccccc--------hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASI--------TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTP 71 (170)
Q Consensus 1 l~iwDt~G~e~~~~~--------~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~ 71 (170)
+++|||||++.+... ...+++++|++++|||.+++.|++. ..|+..+.... .++|+++||||+|+.+ ..
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~ 131 (172)
T 2gj8_A 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITG-ET 131 (172)
T ss_dssp EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHC-CC
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCc-ch
Confidence 469999999764221 1246899999999999999999874 57888877665 5799999999999854 21
Q ss_pred CCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 72 QVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 72 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
. .++...+. .|+++||++|.||+++
T Consensus 132 -~------~~~~~~~~-~~~~~SA~~g~gv~~l 156 (172)
T 2gj8_A 132 -L------GMSEVNGH-ALIRLSARTGEGVDVL 156 (172)
T ss_dssp -C------EEEEETTE-EEEECCTTTCTTHHHH
T ss_pred -h------hhhhccCC-ceEEEeCCCCCCHHHH
Confidence 1 12222333 5889999999999976
No 125
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.59 E-value=4.6e-15 Score=117.82 Aligned_cols=101 Identities=13% Similarity=0.096 Sum_probs=84.9
Q ss_pred CeEEecCCccccc----------cchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCC
Q psy17235 1 MQLWDTGGMERVA----------SITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTT 70 (170)
Q Consensus 1 l~iwDt~G~e~~~----------~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~ 70 (170)
+.||||||+..+. ..+..+++++|++++|+|.+++.++.....|+..+... ++|+++|+||+|+.. .
T Consensus 61 i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~-~ 137 (308)
T 3iev_A 61 IIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIG-P 137 (308)
T ss_dssp EEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSS-S
T ss_pred EEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCC-C
Confidence 4689999986544 56788899999999999999999999888888877663 799999999999974 4
Q ss_pred CCCCHHHHHHHHHhcC-CCeEEEcccCCcchhhhH
Q psy17235 71 PQVTEADMENFWSRRS-SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 ~~v~~~~~~~~a~~~~-~~~~~e~Sa~~~~~v~~~ 104 (170)
+....+....++..++ ...++++||++|.|+++.
T Consensus 138 ~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L 172 (308)
T 3iev_A 138 AKNVLPLIDEIHKKHPELTEIVPISALKGANLDEL 172 (308)
T ss_dssp GGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHH
Confidence 5666777888888884 556889999999999976
No 126
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.57 E-value=2.1e-15 Score=117.97 Aligned_cols=97 Identities=9% Similarity=0.103 Sum_probs=78.0
Q ss_pred CeEEecCCccccc------cchhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVA------SITSSYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~------~~~~~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+++|||||++.|. .++..|+. ++|++++|||.++.+++ ..|...+.. .++|+++|+||+|+.. .+.
T Consensus 51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~~-~~~ 124 (272)
T 3b1v_A 51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVLD-GQG 124 (272)
T ss_dssp EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHHH-HTT
T ss_pred EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhCC-cCC
Confidence 4799999999886 46777886 59999999999987654 356666555 4799999999999865 445
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
+. .++..+++.+|++ ++++||++|.||++.+
T Consensus 125 ~~-~~~~~l~~~lg~~-vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 125 KK-INVDKLSYHLGVP-VVATSALKQTGVDQVV 155 (272)
T ss_dssp CC-CCHHHHHHHHTSC-EEECBTTTTBSHHHHH
T ss_pred cH-HHHHHHHHHcCCC-EEEEEccCCCCHHHHH
Confidence 55 4677889889986 7789999999999873
No 127
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.55 E-value=5.9e-15 Score=114.49 Aligned_cols=97 Identities=21% Similarity=0.147 Sum_probs=77.0
Q ss_pred CeEEecCCcccccc------chhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVAS------ITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~~------~~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
++||||||+..+.. +...|+ .++|++++|+|.++.++.. .|...+... ++|+++|+||+|+.. .+.
T Consensus 54 ~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~--~~pvilv~NK~Dl~~-~~~ 127 (258)
T 3a1s_A 54 INLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL---YLLLEILEM--EKKVILAMTAIDEAK-KTG 127 (258)
T ss_dssp EEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHTT--TCCEEEEEECHHHHH-HTT
T ss_pred EEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHhc--CCCEEEEEECcCCCC-ccc
Confidence 47999999988865 336666 5899999999999976643 466666554 799999999999865 455
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
++. ++..+++.+|++ ++++||++|.|+++.+
T Consensus 128 i~~-~~~~l~~~lg~~-vi~~SA~~g~gi~el~ 158 (258)
T 3a1s_A 128 MKI-DRYELQKHLGIP-VVFTSSVTGEGLEELK 158 (258)
T ss_dssp CCB-CHHHHHHHHCSC-EEECCTTTCTTHHHHH
T ss_pred hHH-HHHHHHHHcCCC-EEEEEeeCCcCHHHHH
Confidence 553 477889999986 6689999999999873
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.54 E-value=1.6e-14 Score=120.23 Aligned_cols=101 Identities=11% Similarity=0.035 Sum_probs=80.0
Q ss_pred CeEEecCC----------ccccccchhh-hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235 1 MQLWDTGG----------MERVASITSS-YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT 69 (170)
Q Consensus 1 l~iwDt~G----------~e~~~~~~~~-~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~ 69 (170)
++|||||| ++.|..++.. +++.+|++++|+|.++..+-. ...|...+.. .+.|+|||+||+|+.+
T Consensus 245 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~- 320 (456)
T 4dcu_A 245 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAVD- 320 (456)
T ss_dssp EEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGSC-
T ss_pred EEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcCC-
Confidence 47999999 7888887765 789999999999999865533 3455555554 4799999999999987
Q ss_pred CCCCCHHHHHHHHHhc----CCCeEEEcccCCcchhhhHH
Q psy17235 70 TPQVTEADMENFWSRR----SSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 70 ~~~v~~~~~~~~a~~~----~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+.++.+++.+.+++. +...++++||++|.||++.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 360 (456)
T 4dcu_A 321 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLM 360 (456)
T ss_dssp CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHH
T ss_pred CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHH
Confidence 6778888877777665 23457889999999999874
No 129
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.53 E-value=1.2e-13 Score=111.73 Aligned_cols=100 Identities=12% Similarity=0.098 Sum_probs=78.0
Q ss_pred CeEEecCCcccccc---------chhhhccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235 1 MQLWDTGGMERVAS---------ITSSYYKFAEAAILVFSLDNAA--SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~---------~~~~~~~~ad~iilv~D~t~~~--Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~ 69 (170)
+++|||||+..+.. ....+...+|++++|+|++++. +++....|+..+....++.|+++|+||+|+..
T Consensus 216 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~- 294 (357)
T 2e87_A 216 YQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD- 294 (357)
T ss_dssp EEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC-
T ss_pred EEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC-
Confidence 47999999865321 1223456799999999999987 78888899999887656899999999999976
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 70 TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 ~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
... .+++..++...+++ ++++||++|.||++.
T Consensus 295 ~~~--~~~~~~~~~~~~~~-~~~iSA~~g~gi~~l 326 (357)
T 2e87_A 295 EEN--IKRLEKFVKEKGLN-PIKISALKGTGIDLV 326 (357)
T ss_dssp HHH--HHHHHHHHHHTTCC-CEECBTTTTBTHHHH
T ss_pred hHH--HHHHHHHHHhcCCC-eEEEeCCCCcCHHHH
Confidence 333 24566677777765 668999999999986
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.52 E-value=2.7e-14 Score=118.32 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=76.7
Q ss_pred CeEEecCCc----------cccccchh-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235 1 MQLWDTGGM----------ERVASITS-SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT 69 (170)
Q Consensus 1 l~iwDt~G~----------e~~~~~~~-~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~ 69 (170)
++||||||+ |.|..++. .+++++|++++|||.+++.+++.. .|+..+.. .+.|+++|+||+|+.+
T Consensus 225 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~- 300 (436)
T 2hjg_A 225 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVD- 300 (436)
T ss_dssp EEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSC-
T ss_pred EEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCC-
Confidence 479999998 66666655 488999999999999999998876 57766654 4799999999999987
Q ss_pred CCCCCHHHHHH-HHHhc---CCCeEEEcccCCcchhhhHH
Q psy17235 70 TPQVTEADMEN-FWSRR---SSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 70 ~~~v~~~~~~~-~a~~~---~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+.++.++..+ +.+.+ +...++++||++|.||++.+
T Consensus 301 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~ 340 (436)
T 2hjg_A 301 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLM 340 (436)
T ss_dssp CCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHH
T ss_pred cchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHH
Confidence 56665544322 22222 23357889999999999873
No 131
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.51 E-value=3.3e-14 Score=112.68 Aligned_cols=97 Identities=15% Similarity=0.208 Sum_probs=71.3
Q ss_pred CeEEecCCccc--------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHH-HHHHhhCCCCeEEEEeeCCCCCCCCC
Q psy17235 1 MQLWDTGGMER--------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHL-LEIVTYAENAKIFLCGNKSDLEGTTP 71 (170)
Q Consensus 1 l~iwDt~G~e~--------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~-~~i~~~~~~~pvvlvgnK~Dl~~~~~ 71 (170)
+.||||||+.. +......+++++|++++|||.+++.+... .|+ ..+....++.|+++|+||+|+.+ ..
T Consensus 57 l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~-~~ 133 (301)
T 1wf3_A 57 IVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAK-YP 133 (301)
T ss_dssp EEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCS-SH
T ss_pred EEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCC-ch
Confidence 46999999876 45567788999999999999998866543 454 44544435799999999999875 22
Q ss_pred CCCHHHHHHHHHh-cCCCeEEEcccCCcchhhhH
Q psy17235 72 QVTEADMENFWSR-RSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 72 ~v~~~~~~~~a~~-~~~~~~~e~Sa~~~~~v~~~ 104 (170)
. +....++. .+...++++||++|.|+++.
T Consensus 134 ~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l 163 (301)
T 1wf3_A 134 E----EAMKAYHELLPEAEPRMLSALDERQVAEL 163 (301)
T ss_dssp H----HHHHHHHHTSTTSEEEECCTTCHHHHHHH
T ss_pred H----HHHHHHHHhcCcCcEEEEeCCCCCCHHHH
Confidence 2 02233333 34456889999999999976
No 132
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.49 E-value=7.5e-15 Score=113.83 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=75.0
Q ss_pred CeEEecCCcccccc----------chhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVAS----------ITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~----------~~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.||||||+..+.. ++..|+ +++|++|+|+|.++++++..+..|+.+ .++|+++|+||+|+..
T Consensus 50 ~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 50 IEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFE-----LGKPVVVALNMMDIAE 124 (256)
T ss_dssp EEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHHHTT-----SCSCEEEEEECHHHHH
T ss_pred EEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHHHHH-----cCCCEEEEEEChhcCC
Confidence 46999999988764 667788 899999999999998777665544432 3799999999999865
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 69 TTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 69 ~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+.+.. ....+++.+|++ ++++||++|.|+++.+
T Consensus 125 -~~~~~~-~~~~l~~~lg~~-vi~~SA~~g~gi~el~ 158 (256)
T 3iby_A 125 -HRGISI-DTEKLESLLGCS-VIPIQAHKNIGIPALQ 158 (256)
T ss_dssp -HTTCEE-CHHHHHHHHCSC-EEECBGGGTBSHHHHH
T ss_pred -cCCcHH-HHHHHHHHcCCC-EEEEECCCCCCHHHHH
Confidence 333332 245578888885 6789999999999873
No 133
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.49 E-value=4.8e-14 Score=111.72 Aligned_cols=94 Identities=13% Similarity=0.013 Sum_probs=78.0
Q ss_pred CccccccchhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCC-HHHHHHHHHhc
Q psy17235 8 GMERVASITSSYYKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVT-EADMENFWSRR 85 (170)
Q Consensus 8 G~e~~~~~~~~~~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~-~~~~~~~a~~~ 85 (170)
.++++..+.+.+++++|++++|||+++|. |+..+..|+..+.. .++|++||+||+|+.+ .+.++ .++...+++..
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~-~~~v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLN-EEEKKELERWISIYRDA 141 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCC-HHHHHHHHHHHHHHHHT
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCC-ccccHHHHHHHHHHHHC
Confidence 38889999999999999999999999996 99999999987655 5799999999999976 33333 45566677777
Q ss_pred CCCeEEEcccCCcchhhhHH
Q psy17235 86 SSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 86 ~~~~~~e~Sa~~~~~v~~~~ 105 (170)
|. .++++||++|.|+++.+
T Consensus 142 g~-~~~~~SA~~g~gi~~L~ 160 (302)
T 2yv5_A 142 GY-DVLKVSAKTGEGIDELV 160 (302)
T ss_dssp TC-EEEECCTTTCTTHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHH
Confidence 87 47789999999999763
No 134
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.49 E-value=5.4e-14 Score=117.83 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=62.7
Q ss_pred CeEEecCCccccccch--------hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASIT--------SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~--------~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+.||||||++.+...+ ..+++++|++++|||.+++.+++.+..+..-+. ...+.|+++|+||+|+.. ...
T Consensus 283 l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~-~l~~~piIvV~NK~Dl~~-~~~ 360 (476)
T 3gee_A 283 FRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKA-AHPAAKFLTVANKLDRAA-NAD 360 (476)
T ss_dssp EEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHH-HCTTSEEEEEEECTTSCT-TTH
T ss_pred EEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHH-hcCCCCEEEEEECcCCCC-ccc
Confidence 4799999998766443 447899999999999999998864433332222 224799999999999976 443
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+. .+.++.. +...++++||++|.||++.
T Consensus 361 ~~---~~~l~~~-~~~~~i~vSAktg~GI~eL 388 (476)
T 3gee_A 361 AL---IRAIADG-TGTEVIGISALNGDGIDTL 388 (476)
T ss_dssp HH---HHHHHHH-HTSCEEECBTTTTBSHHHH
T ss_pred hh---HHHHHhc-CCCceEEEEECCCCCHHHH
Confidence 32 2334443 2356889999999999986
No 135
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.48 E-value=5.2e-14 Score=105.55 Aligned_cols=100 Identities=12% Similarity=0.018 Sum_probs=69.3
Q ss_pred CeEEecCC----------ccccccchhhhccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGG----------MERVASITSSYYKF---AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G----------~e~~~~~~~~~~~~---ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~ 67 (170)
+.|||||| ++.|..+...|++. +|++++|+|.+++.+.. ...|+..+.. .++|+++|+||+|+.
T Consensus 81 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 81 AHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLTKCDKL 157 (223)
T ss_dssp EEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEECGGGS
T ss_pred EEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEeccccC
Confidence 46999999 55667777788776 88899999999865532 2345555444 478999999999986
Q ss_pred CCCCCCC--HHHHHHHHHhc------CCCeEEEcccCCcchhhhH
Q psy17235 68 GTTPQVT--EADMENFWSRR------SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 68 ~~~~~v~--~~~~~~~a~~~------~~~~~~e~Sa~~~~~v~~~ 104 (170)
. ...+. .++..+..... +...++++||++|.||++.
T Consensus 158 ~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l 201 (223)
T 4dhe_A 158 T-RQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDA 201 (223)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHH
T ss_pred C-hhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHH
Confidence 5 33321 12222333332 4456889999999999976
No 136
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.6e-13 Score=100.59 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=60.8
Q ss_pred CeEEecCCccccccchhhhccC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKF----AEAAILVFSLD-NAASFHVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~----ad~iilv~D~t-~~~Sf~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~ 68 (170)
+.+|||||++.+...+..++++ +|++|+|||++ ++.+|..+..|+..+.... +++|+++||||+|+.+
T Consensus 93 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 93 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp CSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred EEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 5799999999999999988887 89999999999 9999999999988876542 5899999999999976
No 137
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.48 E-value=2.8e-14 Score=118.28 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=79.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-----CCC-eEEEEeeCCCCCCCCC---
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA-KIFLCGNKSDLEGTTP--- 71 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-----~~~-pvvlvgnK~Dl~~~~~--- 71 (170)
+.||||||++.|...+..+++.+|++|+|||.++ .+|+.+..|..+...+. .++ |+++++||+|+.+...
T Consensus 86 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~ 164 (435)
T 1jny_A 86 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEK 164 (435)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred EEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHH
Confidence 4799999999999999999999999999999999 88887665554443332 244 6899999999865100
Q ss_pred --CCCHHHHHHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235 72 --QVTEADMENFWSRRSS----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 72 --~v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~~ 104 (170)
....+++..+++.+++ ..|+++||++|.|+.+.
T Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 165 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 1234567778887774 46889999999999865
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.48 E-value=6.2e-14 Score=115.83 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=75.1
Q ss_pred CeEEecCCccccccc-------hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASI-------TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV 73 (170)
Q Consensus 1 l~iwDt~G~e~~~~~-------~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v 73 (170)
+.||||||++.|..+ +..+++++|++|+|||.+.... ...|+..+... ++|+++|+||+|+.. .+..
T Consensus 85 l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~--~~piIvV~NK~Dl~~-~~~~ 158 (423)
T 3qq5_A 85 VTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPY---EDDVVNLFKEM--EIPFVVVVNKIDVLG-EKAE 158 (423)
T ss_dssp EEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT--TCCEEEECCCCTTTT-CCCT
T ss_pred EEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc--CCCEEEEEeCcCCCC-ccHH
Confidence 479999999988665 3458999999999999943333 35677776665 799999999999987 4443
Q ss_pred CHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 74 TEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+.+.++++.++++ ++++||++|.|+++.
T Consensus 159 --~~~~~l~~~~g~~-v~~vSAktg~gI~eL 186 (423)
T 3qq5_A 159 --ELKGLYESRYEAK-VLLVSALQKKGFDDI 186 (423)
T ss_dssp --HHHHHSSCCTTCC-CCCCSSCCTTSTTTH
T ss_pred --HHHHHHHHHcCCC-EEEEECCCCCCHHHH
Confidence 6677788888875 668999999999987
No 139
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.46 E-value=9.6e-14 Score=111.84 Aligned_cols=99 Identities=13% Similarity=0.226 Sum_probs=80.1
Q ss_pred CeEEecCCcc----ccccchhhhccC---CcEEEEEEeCCC---hhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGME----RVASITSSYYKF---AEAAILVFSLDN---AASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e----~~~~~~~~~~~~---ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~ 67 (170)
+.||||||+. .+..+...|++. +|++|+|+|+++ +.+++.+..|+.++..+. .+.|++||+||+|+.
T Consensus 208 ~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 208 FVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp EEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred EEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 4799999964 355566777664 999999999999 889999999999998875 489999999999986
Q ss_pred CCCCCCCHHHHHHHHHhcCC-CeEEEcccCCcchhhhH
Q psy17235 68 GTTPQVTEADMENFWSRRSS-RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 68 ~~~~~v~~~~~~~~a~~~~~-~~~~e~Sa~~~~~v~~~ 104 (170)
. . .+...++++.++. ..++++||+++.|+++.
T Consensus 288 ~-~----~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL 320 (342)
T 1lnz_A 288 E-A----AENLEAFKEKLTDDYPVFPISAVTREGLREL 320 (342)
T ss_dssp T-H----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHH
T ss_pred C-C----HHHHHHHHHHhhcCCCEEEEECCCCcCHHHH
Confidence 5 2 2456677777763 35778999999999976
No 140
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.45 E-value=2.1e-13 Score=117.01 Aligned_cols=98 Identities=16% Similarity=0.086 Sum_probs=80.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
++||||||++.|...+..+++.+|++|+|+|.++..+++....|..... .++|+++|+||+|+.+ .+ ..+...+
T Consensus 73 l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~-a~--~~~v~~e 146 (599)
T 3cb4_D 73 LNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPA-AD--PERVAEE 146 (599)
T ss_dssp EEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTT-CC--HHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCccc-cc--HHHHHHH
Confidence 4699999999999999999999999999999999888888877865543 3789999999999976 22 3444566
Q ss_pred HHHhcCCC--eEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSR--RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~--~~~e~Sa~~~~~v~~~ 104 (170)
+...++.. .++++||++|.||++.
T Consensus 147 i~~~lg~~~~~vi~vSAktg~GI~~L 172 (599)
T 3cb4_D 147 IEDIVGIDATDAVRCSAKTGVGVQDV 172 (599)
T ss_dssp HHHHTCCCCTTCEEECTTTCTTHHHH
T ss_pred HHHHhCCCcceEEEeecccCCCchhH
Confidence 77777764 4778999999999865
No 141
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.45 E-value=3.5e-13 Score=115.58 Aligned_cols=98 Identities=15% Similarity=0.088 Sum_probs=80.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
++||||||++.|...+..+++.+|++|+|+|.++..+++....|..... .++|+++|+||+|+.+ .. ..+...+
T Consensus 75 inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~-a~--~~~v~~e 148 (600)
T 2ywe_A 75 LHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPS-AD--VDRVKKQ 148 (600)
T ss_dssp EEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTT-CC--HHHHHHH
T ss_pred EEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccc-cC--HHHHHHH
Confidence 4699999999999999999999999999999999988888888865543 4799999999999976 22 3344566
Q ss_pred HHHhcCCC--eEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSR--RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~--~~~e~Sa~~~~~v~~~ 104 (170)
+...++.. .++++||++|.||++.
T Consensus 149 l~~~lg~~~~~vi~vSAktg~GI~~L 174 (600)
T 2ywe_A 149 IEEVLGLDPEEAILASAKEGIGIEEI 174 (600)
T ss_dssp HHHTSCCCGGGCEECBTTTTBSHHHH
T ss_pred HHHhhCCCcccEEEEEeecCCCchHH
Confidence 77767764 3788999999999975
No 142
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.45 E-value=4.2e-14 Score=110.51 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=72.4
Q ss_pred CeEEecCCcccccc----------chhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVAS----------ITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~----------~~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.||||||+..+.. ++..|+ +++|++++|+|.++.++...+..|+. .. ++|+++|+||+|+..
T Consensus 52 ~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~--~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLL---EL--GIPCIVALNMLDIAE 126 (274)
T ss_dssp EEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH--TCCEEEEEECHHHHH
T ss_pred eEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHH---hc--CCCEEEEEECccchh
Confidence 46899999988763 234444 79999999999998776655444443 33 799999999999865
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 69 TTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 69 ~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+.+. .+...+++.+|++ ++++||++|.|+++.+
T Consensus 127 -~~~~~-~~~~~l~~~lg~~-~i~~SA~~g~gi~el~ 160 (274)
T 3i8s_A 127 -KQNIR-IEIDALSARLGCP-VIPLVSTRGRGIEALK 160 (274)
T ss_dssp -HTTEE-ECHHHHHHHHTSC-EEECCCGGGHHHHHHH
T ss_pred -hhhHH-HHHHHHHHhcCCC-EEEEEcCCCCCHHHHH
Confidence 33332 2356788888885 6789999999999873
No 143
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.43 E-value=1.1e-13 Score=107.70 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=75.2
Q ss_pred CeEEecCCcccccc------chhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVAS------ITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~~------~~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+.||||||+..+.. ++..|+ .++|++++|+|.++... ...|...+... ...|+++|+||+|+.. .+.
T Consensus 52 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~---~~~~~~~~~~~-~~~p~ilv~NK~Dl~~-~~~ 126 (271)
T 3k53_A 52 FLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMR---NLFLTLELFEM-EVKNIILVLNKFDLLK-KKG 126 (271)
T ss_dssp EEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHHHHT-TCCSEEEEEECHHHHH-HHT
T ss_pred EEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchh---hHHHHHHHHhc-CCCCEEEEEEChhcCc-ccc
Confidence 46999999998876 677777 68999999999988643 33455555443 2399999999999865 333
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhHHH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEAEQ 106 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~~~ 106 (170)
+..+ ...+++.+|++ ++++||++|.|+.+.+.
T Consensus 127 ~~~~-~~~l~~~lg~~-~~~~Sa~~g~gi~~l~~ 158 (271)
T 3k53_A 127 AKID-IKKMRKELGVP-VIPTNAKKGEGVEELKR 158 (271)
T ss_dssp CCCC-HHHHHHHHSSC-EEECBGGGTBTHHHHHH
T ss_pred cHHH-HHHHHHHcCCc-EEEEEeCCCCCHHHHHH
Confidence 3332 67788888986 66899999999998743
No 144
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.43 E-value=6.1e-12 Score=105.49 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=71.2
Q ss_pred CeEEecCCcc-cccc--------chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC
Q psy17235 1 MQLWDTGGME-RVAS--------ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTP 71 (170)
Q Consensus 1 l~iwDt~G~e-~~~~--------~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~ 71 (170)
+.||||||++ .+.. ....+++++|++|+|||++++.+++... +++.+ .+.|+++|+||+|+..
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~--- 364 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVE--- 364 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCC---
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECccccc---
Confidence 4799999998 6542 2456889999999999999998887643 22322 4789999999999975
Q ss_pred CCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 72 QVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 72 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.++.+++..++. .+. .++++||++|.|+++.
T Consensus 365 ~~~~~~~~~~~~-~~~-~~i~iSAktg~Gi~eL 395 (482)
T 1xzp_A 365 KINEEEIKNKLG-TDR-HMVKISALKGEGLEKL 395 (482)
T ss_dssp CCCHHHHHHHHT-CST-TEEEEEGGGTCCHHHH
T ss_pred ccCHHHHHHHhc-CCC-cEEEEECCCCCCHHHH
Confidence 355566655543 233 4778999999999987
No 145
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.42 E-value=4e-13 Score=110.23 Aligned_cols=102 Identities=14% Similarity=0.167 Sum_probs=78.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC--CHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV--TEADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v--~~~~~ 78 (170)
+.||||||++.|...+..++..+|++|+|+|.++..++.....|+..+... ...|+++|+||+|+.+ .... ..++.
T Consensus 77 ~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~-~~~~~~~~~~i 154 (403)
T 3sjy_A 77 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVS-KEEALSQYRQI 154 (403)
T ss_dssp EEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSC-HHHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccc-hHHHHHHHHHH
Confidence 469999999999999999999999999999999988888888888766554 3358999999999876 2211 11233
Q ss_pred HHHHHhcC--CCeEEEcccCCcchhhhH
Q psy17235 79 ENFWSRRS--SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 79 ~~~a~~~~--~~~~~e~Sa~~~~~v~~~ 104 (170)
.++....+ ...++++||++|.|+++.
T Consensus 155 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L 182 (403)
T 3sjy_A 155 KQFTKGTWAENVPIIPVSALHKINIDSL 182 (403)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHH
T ss_pred HHHHHhhCCCCCEEEEEECCCCcChHHH
Confidence 34443332 235889999999999865
No 146
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.42 E-value=1.3e-13 Score=115.30 Aligned_cols=104 Identities=18% Similarity=0.162 Sum_probs=65.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhC-CCCe-EEEEeeCCCCCCCC-----
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA---ASFHVLSQHLLEIVTYA-ENAK-IFLCGNKSDLEGTT----- 70 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~---~Sf~~~~~~~~~i~~~~-~~~p-vvlvgnK~Dl~~~~----- 70 (170)
+.|||||||+.|...+..+++.+|++|+|+|.++. .||+....|...+.... .++| +||++||+|+.+..
T Consensus 123 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~ 202 (467)
T 1r5b_A 123 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEER 202 (467)
T ss_dssp EEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHH
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHH
Confidence 46999999999999999999999999999999986 45543333433332222 4677 99999999995411
Q ss_pred CCCCHHHHHHHHHhc-CCC-----eEEEcccCCcchhhhH
Q psy17235 71 PQVTEADMENFWSRR-SSR-----RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 ~~v~~~~~~~~a~~~-~~~-----~~~e~Sa~~~~~v~~~ 104 (170)
.....++...+++.. ++. .|+++||++|.|+.+.
T Consensus 203 ~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 203 YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred HHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 011234567777776 543 4889999999999864
No 147
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.40 E-value=1.8e-12 Score=111.26 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=53.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
++||||||++.|..++..+++.+|++|+|||.++ ++|++.+..+ .. .++|+++++||+|+..
T Consensus 72 i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~--~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YRTPFVVAANKIDRIH 136 (594)
T ss_dssp EEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH--TTCCEEEEEECGGGST
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH--cCCeEEEEeccccccc
Confidence 4799999999999999999999999999999999 7888765432 22 4799999999999864
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.40 E-value=4.3e-13 Score=112.49 Aligned_cols=103 Identities=13% Similarity=0.044 Sum_probs=69.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHH--HHHH---HHHHhhCCCCeEEEEeeCCCCCCCCCCCCH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVL--SQHL---LEIVTYAENAKIFLCGNKSDLEGTTPQVTE 75 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~--~~~~---~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~ 75 (170)
+.||||||++.|...+..+++++|++|+|+|.++..++..+ ..+. ..+.......|+|||+||+|+.+ .+....
T Consensus 113 ~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~-~~~~~~ 191 (483)
T 3p26_A 113 FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD-WSQQRF 191 (483)
T ss_dssp EEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT-TCHHHH
T ss_pred EEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc-chHHHH
Confidence 47999999999999999999999999999999997654331 1111 12222223356999999999976 444433
Q ss_pred HH----HHHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235 76 AD----MENFWSRRSS----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 76 ~~----~~~~a~~~~~----~~~~e~Sa~~~~~v~~~ 104 (170)
++ ...+....+. ..|+++||++|.|+.+.
T Consensus 192 ~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 192 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 33 3344444454 35889999999999863
No 149
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.39 E-value=6.4e-13 Score=110.12 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=69.0
Q ss_pred CeEEecCCccc---------cccchhhhccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCCCCC
Q psy17235 1 MQLWDTGGMER---------VASITSSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDLEGT 69 (170)
Q Consensus 1 l~iwDt~G~e~---------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~ 69 (170)
++||||||++. +...+..++++||++++|||.++..+... +..|+.. .+.|++||+||+|+..
T Consensus 51 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~-----~~~p~ilv~NK~D~~~- 124 (439)
T 1mky_A 51 FKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK-----STVDTILVANKAENLR- 124 (439)
T ss_dssp EEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH-----HTCCEEEEEESCCSHH-
T ss_pred EEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEeCCCCcc-
Confidence 47999999764 34567788999999999999998766543 3344332 3789999999999854
Q ss_pred CCCCCHHHH-HHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 70 TPQVTEADM-ENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 70 ~~~v~~~~~-~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
. + ..+. .+++ .+|+..++++||++|.|+.+.
T Consensus 125 ~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L 156 (439)
T 1mky_A 125 E--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTM 156 (439)
T ss_dssp H--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHH
T ss_pred c--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHH
Confidence 1 1 2233 4554 567755778999999999976
No 150
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.39 E-value=8.5e-13 Score=99.15 Aligned_cols=99 Identities=8% Similarity=0.021 Sum_probs=65.5
Q ss_pred ecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh----hC--CCCeEEEEeeCC-CCCCCCCCCCHHH
Q psy17235 5 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT----YA--ENAKIFLCGNKS-DLEGTTPQVTEAD 77 (170)
Q Consensus 5 Dt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~----~~--~~~pvvlvgnK~-Dl~~~~~~v~~~~ 77 (170)
|.+||+.++.+|+.||.++||+|+|+|.+|++.++ .+..+.++.. .. .++|++|.+||. |+++ .++..+
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~---Ams~~E 183 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFY 183 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC---BCCHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC---CCCHHH
Confidence 35699999999999999999999999999987665 4444433322 11 578999999995 7765 667666
Q ss_pred HHHHHHh---cCCCeEEEcccCCcchhhhH-HHH
Q psy17235 78 MENFWSR---RSSRRFKPQEVVEPQEVVEA-EQV 107 (170)
Q Consensus 78 ~~~~a~~---~~~~~~~e~Sa~~~~~v~~~-~~~ 107 (170)
..+...- ..-.++..|||.+|+|+.++ .|+
T Consensus 184 I~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL 217 (227)
T 3l82_B 184 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWI 217 (227)
T ss_dssp HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred HHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHH
Confidence 5443221 12346888999999999987 444
No 151
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.38 E-value=2.1e-12 Score=106.10 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=67.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC-CCCH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTP-QVTE 75 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~----~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~-~v~~ 75 (170)
+.|||||||+.|...+...+..+|++|+|+|.++ +++++.+..| .. ....|+++++||+|+.+..+ ....
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~-l~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EI-LGIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HH-TTCCCEEEEEECTTSSCTTTTTTHH
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HH-cCCCeEEEEEEccCCCCHHHHHHHH
Confidence 4799999999998877777888999999999994 5666665433 21 23358999999999976222 2345
Q ss_pred HHHHHHHHhcC--CCeEEEcccCCcchhhhH
Q psy17235 76 ADMENFWSRRS--SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 76 ~~~~~~a~~~~--~~~~~e~Sa~~~~~v~~~ 104 (170)
+++.++++... ...++++||++|.|+++.
T Consensus 158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L 188 (408)
T 1s0u_A 158 EQIKEFVKGTIAENAPIIPISAHHEANIDVL 188 (408)
T ss_dssp HHHHHHHTTSTTTTCCEEEC------CHHHH
T ss_pred HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHH
Confidence 67777776542 235788999999999865
No 152
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.38 E-value=1.2e-12 Score=108.28 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=74.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC--C--CHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ--V--TEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~--v--~~~ 76 (170)
+.||||||++.|...+..+++.+|++|+|+|.++....+ ...|+..+... .-.|+|+|+||+|+.+ ... + ..+
T Consensus 106 ~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~-~~~~iIvviNK~Dl~~-~~~~~~~~i~~ 182 (434)
T 1zun_B 106 FIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL-GIKHIVVAINKMDLNG-FDERVFESIKA 182 (434)
T ss_dssp EEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT-TCCEEEEEEECTTTTT-SCHHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-CCCeEEEEEEcCcCCc-ccHHHHHHHHH
Confidence 469999999999988889999999999999999865332 33454443332 2236999999999975 211 1 235
Q ss_pred HHHHHHHhcC--C--CeEEEcccCCcchhhhH
Q psy17235 77 DMENFWSRRS--S--RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~--~--~~~~e~Sa~~~~~v~~~ 104 (170)
+...+++.++ . ..++++||++|.|+.+.
T Consensus 183 ~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 183 DYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 5667777777 2 35889999999999874
No 153
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.37 E-value=5.6e-13 Score=111.17 Aligned_cols=102 Identities=19% Similarity=0.159 Sum_probs=73.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCC--
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SFH---VLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTP-- 71 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~---Sf~---~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~-- 71 (170)
+.|||||||+.|...+..+++.+|++|+|+|.++.. ||+ ....++..+.. .++| +|+|+||+|+.+...
T Consensus 87 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~~~~ 164 (458)
T 1f60_A 87 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKWDESR 164 (458)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTCHHH
T ss_pred EEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccCCHHH
Confidence 479999999999999999999999999999999752 442 22233332222 3565 999999999863111
Q ss_pred -CCCHHHHHHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235 72 -QVTEADMENFWSRRSS----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 72 -~v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~~ 104 (170)
....++...+++.+++ ..|+++||++|.|+.+.
T Consensus 165 ~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 165 FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 1223456677777775 36889999999999754
No 154
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.36 E-value=3.1e-13 Score=114.57 Aligned_cols=101 Identities=13% Similarity=0.186 Sum_probs=72.1
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
++||||||++.|..++..+++.+|++|+|||.++..+.+....| ..+.. .++|+++++||+|+.+........+...
T Consensus 54 i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~ 130 (537)
T 3izy_P 54 ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEADPEKVKKELLA 130 (537)
T ss_dssp CBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHH
T ss_pred EEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH--cCCcEEEEEecccccccchHHHHHHHHh
Confidence 57999999999999999999999999999999997666544333 22222 4789999999999875211111122222
Q ss_pred H---HHhcC-CCeEEEcccCCcchhhhH
Q psy17235 81 F---WSRRS-SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~---a~~~~-~~~~~e~Sa~~~~~v~~~ 104 (170)
+ +..++ ...|+++||++|.|+++.
T Consensus 131 ~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 131 YDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp TTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred hhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 1 22222 235889999999999976
No 155
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.35 E-value=6.1e-13 Score=110.37 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=72.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhh---HH---HHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCC---
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAAS---FH---VLSQHLLEIVTYAENAK-IFLCGNKSDLEGTT--- 70 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~S---f~---~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~--- 70 (170)
+.||||||++.|...+..+++.+|++|+|+|.++... |+ .....+..+.. .++| +|+++||+|+....
T Consensus 97 ~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~~~~~ 174 (439)
T 3j2k_7 97 FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTVNWSN 174 (439)
T ss_pred EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcccchHH
Confidence 4799999999999999999999999999999998532 22 11222222222 3566 99999999985310
Q ss_pred --CCCCHHHHHHHHHhcCC-----CeEEEcccCCcchhhhH
Q psy17235 71 --PQVTEADMENFWSRRSS-----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 --~~v~~~~~~~~a~~~~~-----~~~~e~Sa~~~~~v~~~ 104 (170)
.....++...+++.+|+ ..|+++||++|.|+.+.
T Consensus 175 ~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l 215 (439)
T 3j2k_7 175 ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQ 215 (439)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccc
Confidence 11223455666666665 25889999999999975
No 156
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.34 E-value=7.9e-13 Score=109.50 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=65.5
Q ss_pred CeEEecCCcc--------ccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGME--------RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e--------~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
++||||||++ .+...+..+++++|++|+|+|.++..++.. .|+..+... .+.|++||+||+|+.. .+.
T Consensus 53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~-~~~pvilv~NK~D~~~-~~~ 128 (436)
T 2hjg_A 53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR-TKKPVVLAVNKLDNTE-MRA 128 (436)
T ss_dssp CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT-CCSCEEEEEECCCC------
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH-cCCCEEEEEECccCcc-chh
Confidence 5799999986 577788899999999999999999877654 344443332 5789999999999865 221
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+..++. ..|+..++++||++|.|+.+.
T Consensus 129 ----~~~~~~-~lg~~~~~~iSA~~g~gv~~L 155 (436)
T 2hjg_A 129 ----NIYDFY-SLGFGEPYPISGTHGLGLGDL 155 (436)
T ss_dssp ----CCCSSG-GGSSCCCEECBTTTTBTHHHH
T ss_pred ----hHHHHH-HcCCCCeEEEeCcCCCChHHH
Confidence 112233 456656788999999999976
No 157
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.32 E-value=1.6e-12 Score=106.65 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=74.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCC---CCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQ---VTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~---v~~~ 76 (170)
+.||||||++.|...+..+++.+|++|+|+|.++.... ....|+..+... ++| +++++||+|+.+ ... ...+
T Consensus 77 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~--~ip~iivviNK~Dl~~-~~~~~~~~~~ 152 (405)
T 2c78_A 77 YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--GVPYIVVFMNKVDMVD-DPELLDLVEM 152 (405)
T ss_dssp EEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT--TCCCEEEEEECGGGCC-CHHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCEEEEEEECccccC-cHHHHHHHHH
Confidence 46999999999999889999999999999999987654 345566555443 688 889999999874 221 1234
Q ss_pred HHHHHHHhcCC----CeEEEcccCCcchhh
Q psy17235 77 DMENFWSRRSS----RRFKPQEVVEPQEVV 102 (170)
Q Consensus 77 ~~~~~a~~~~~----~~~~e~Sa~~~~~v~ 102 (170)
+...+++.+++ ..++++||++|.|+.
T Consensus 153 ~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~ 182 (405)
T 2c78_A 153 EVRDLLNQYEFPGDEVPVIRGSALLALEQM 182 (405)
T ss_dssp HHHHHHHHTTSCTTTSCEEECCHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCEEEccHHHhhhhh
Confidence 56677777774 458899999998753
No 158
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.32 E-value=7.8e-13 Score=111.27 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=69.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC-CCCCCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT-TPQVTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~-~~~v~~~ 76 (170)
+.|||||||+.|..++..++..+|++|+|||.++ +++++.+. .+.. .++|+++++||+|+.+. ...+..+
T Consensus 53 i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~----~~~~--~~vPiIVviNKiDl~~~~~~~v~~~ 126 (501)
T 1zo1_I 53 ITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQ----HAKA--AQVPVVVAVNKIDKPEADPDRVKNE 126 (501)
T ss_dssp CCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHH----HHHH--TTCCEEEEEECSSSSTTCCCCTTCC
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHH----HHHh--cCceEEEEEEeccccccCHHHHHHH
Confidence 5799999999999999999999999999999988 55655432 2222 47899999999999752 1111111
Q ss_pred --HHHHHHHhcC-CCeEEEcccCCcchhhhH
Q psy17235 77 --DMENFWSRRS-SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 77 --~~~~~a~~~~-~~~~~e~Sa~~~~~v~~~ 104 (170)
+...++..++ ...|+++||++|.|+++.
T Consensus 127 l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL 157 (501)
T 1zo1_I 127 LSQYGILPEEWGGESQFVHVSAKAGTGIDEL 157 (501)
T ss_dssp CCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred HHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence 0001122232 236889999999999976
No 159
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.31 E-value=4.7e-12 Score=99.04 Aligned_cols=102 Identities=12% Similarity=0.023 Sum_probs=68.8
Q ss_pred CeEEecCCcc-------------ccccchhhhccCCcEEE-EEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 1 MQLWDTGGME-------------RVASITSSYYKFAEAAI-LVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 1 l~iwDt~G~e-------------~~~~~~~~~~~~ad~ii-lv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
+.||||||.. .+..++..|++++++++ +|+|.++..+......|+..+.. .+.|+++|+||+|+
T Consensus 127 l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~--~~~~~i~V~NK~Dl 204 (299)
T 2aka_B 127 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDL 204 (299)
T ss_dssp EEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT--TCSSEEEEEECGGG
T ss_pred ceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC--CCCeEEEEEEcccc
Confidence 4799999963 45667888999998777 69999886555444345554432 47899999999999
Q ss_pred CCCCCCCCHHHHHHHHHhc--CCCeEEEcccCCcchhhhHH
Q psy17235 67 EGTTPQVTEADMENFWSRR--SSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 67 ~~~~~~v~~~~~~~~a~~~--~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+ ......+......... +...++++||++|.|+++.+
T Consensus 205 ~~-~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~ 244 (299)
T 2aka_B 205 MD-EGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDIT 244 (299)
T ss_dssp SC-TTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHH
T ss_pred CC-CCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHH
Confidence 76 3332322222100111 22346789999999999873
No 160
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.31 E-value=3.9e-12 Score=103.43 Aligned_cols=98 Identities=10% Similarity=0.032 Sum_probs=74.3
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeE-EEEee-CCCCCCCCCCCCH--H
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGN-KSDLEGTTPQVTE--A 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pv-vlvgn-K~Dl~~~~~~v~~--~ 76 (170)
+.||||||++.|......+++.+|++|+|+| + ...+...+.|+..+... ++|. +++.| |+|+ + ...+.. +
T Consensus 62 i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~-~~~~~~~~~ 135 (370)
T 2elf_A 62 MVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECIIALDLL--GFKHGIIALTRSDST-H-MHAIDELKA 135 (370)
T ss_dssp EEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-C-HHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-C-HHHHHHHHH
Confidence 4799999999998888888999999999999 4 45566666776665544 5676 88888 9999 5 433332 5
Q ss_pred HHHHHHHhcCC--CeEEE--cccCC---cchhhhH
Q psy17235 77 DMENFWSRRSS--RRFKP--QEVVE---PQEVVEA 104 (170)
Q Consensus 77 ~~~~~a~~~~~--~~~~e--~Sa~~---~~~v~~~ 104 (170)
+..++.+..+. ..+++ +||++ +.|+++.
T Consensus 136 ~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L 170 (370)
T 2elf_A 136 KLKVITSGTVLQDWECISLNTNKSAKNPFEGVDEL 170 (370)
T ss_dssp HHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHH
T ss_pred HHHHHHHhcCCCceEEEecccccccCcCCCCHHHH
Confidence 66667766543 36788 99999 9999875
No 161
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.31 E-value=3.4e-12 Score=107.07 Aligned_cols=97 Identities=20% Similarity=0.141 Sum_probs=73.0
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC--CCCH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN---AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTP--QVTE 75 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~---~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~--~v~~ 75 (170)
+.||||||++.|...+..++..+|++|+|+|.++ +++++.+. .+.. .++|+++|+||+|+.+ .. ....
T Consensus 75 i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~--~~ip~IvviNK~Dl~~-~~~~~~~~ 147 (482)
T 1wb1_A 75 ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH--FNIPIIVVITKSDNAG-TEEIKRTE 147 (482)
T ss_dssp EEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH--TTCCBCEEEECTTSSC-HHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH--cCCCEEEEEECCCccc-chhHHHHH
Confidence 4799999999999988999999999999999998 66665543 2222 3688999999999875 21 1223
Q ss_pred HHHHHHHHhc-CC--CeEEEcccCCcchhhhH
Q psy17235 76 ADMENFWSRR-SS--RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 76 ~~~~~~a~~~-~~--~~~~e~Sa~~~~~v~~~ 104 (170)
++...+++.. +. ..++++||++|.|+++.
T Consensus 148 ~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L 179 (482)
T 1wb1_A 148 MIMKSILQSTHNLKNSSIIPISAKTGFGVDEL 179 (482)
T ss_dssp HHHHHHHHHSSSGGGCCEEECCTTTCTTHHHH
T ss_pred HHHHHHHhhhcccccceEEEEECcCCCCHHHH
Confidence 4555666555 22 35788999999999865
No 162
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.30 E-value=2e-12 Score=111.31 Aligned_cols=103 Identities=15% Similarity=0.097 Sum_probs=70.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChh---hHHHHHHHHHH--HHhhCCCCeEEEEeeCCCCCCCCCCCC-
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAA---SFHVLSQHLLE--IVTYAENAKIFLCGNKSDLEGTTPQVT- 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~---Sf~~~~~~~~~--i~~~~~~~pvvlvgnK~Dl~~~~~~v~- 74 (170)
+.||||||++.|...+..+++++|++|+|+|.++.. +|.....+... +.......|+|||+||+|+.+ .+...
T Consensus 247 ~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~-~~~~~~ 325 (611)
T 3izq_1 247 FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD-WSQQRF 325 (611)
T ss_dssp EEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT-TCHHHH
T ss_pred EEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc-hhHHHH
Confidence 479999999999999999999999999999998742 11111111111 111113345999999999876 33322
Q ss_pred ---HHHHHHHHHhcCC----CeEEEcccCCcchhhhH
Q psy17235 75 ---EADMENFWSRRSS----RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 75 ---~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~~ 104 (170)
.++...+....|. ..|+++||++|.||.+.
T Consensus 326 ~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 326 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2344455555554 36889999999999853
No 163
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.30 E-value=3.1e-12 Score=100.31 Aligned_cols=100 Identities=6% Similarity=0.007 Sum_probs=70.5
Q ss_pred ecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHH---HHH-hh--CCCCeEEEEeeC-CCCCCCCCCCCHHH
Q psy17235 5 DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLL---EIV-TY--AENAKIFLCGNK-SDLEGTTPQVTEAD 77 (170)
Q Consensus 5 Dt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~---~i~-~~--~~~~pvvlvgnK-~Dl~~~~~~v~~~~ 77 (170)
|.+||+.++.+|+.||.++||+|+|+|.+|++.++ .+..+. .+. .. ..++|++|.+|| .|+++ .++..+
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~---Ams~~E 268 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFY 268 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC---BCCHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC---CCCHHH
Confidence 35799999999999999999999999999998765 333333 222 11 268999999996 68865 666666
Q ss_pred HHHHHHh---cCCCeEEEcccCCcchhhhH-HHHH
Q psy17235 78 MENFWSR---RSSRRFKPQEVVEPQEVVEA-EQVQ 108 (170)
Q Consensus 78 ~~~~a~~---~~~~~~~e~Sa~~~~~v~~~-~~~~ 108 (170)
..+...- ..-.++..|||.+|+|+.++ .|+.
T Consensus 269 I~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~ 303 (312)
T 3l2o_B 269 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWIL 303 (312)
T ss_dssp HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHH
T ss_pred HHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHH
Confidence 5443221 12346888999999999988 4444
No 164
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.29 E-value=1.6e-11 Score=104.00 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=55.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.||||||++.|...+..+++.+|++|+|+|.++..+......|. .+.. .++|+++|+||+|+..
T Consensus 84 i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~--~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 84 INLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL--RHTPIMTFINKMDRDT 148 (528)
T ss_dssp EEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT--TTCCEEEEEECTTSCC
T ss_pred EEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH--cCCCEEEEEeCCCCcc
Confidence 479999999999999999999999999999999988887766553 3333 3799999999999965
No 165
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.29 E-value=4.3e-12 Score=103.92 Aligned_cols=97 Identities=11% Similarity=0.045 Sum_probs=71.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCC--CCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQ--VTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~--v~~~~ 77 (170)
+.||||||++.|...+..+++.+|++|+|+|.++....+....| ..+.. .++| +++++||+|+.++... ...++
T Consensus 68 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~ 144 (397)
T 1d2e_A 68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ--IGVEHVVVYVNKADAVQDSEMVELVELE 144 (397)
T ss_dssp EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHH
Confidence 47999999999988888999999999999999986544333333 33333 3688 6899999998741111 12356
Q ss_pred HHHHHHhcCC----CeEEEcccCCcch
Q psy17235 78 MENFWSRRSS----RRFKPQEVVEPQE 100 (170)
Q Consensus 78 ~~~~a~~~~~----~~~~e~Sa~~~~~ 100 (170)
+.++++.+++ ..|+++||++|.|
T Consensus 145 ~~~~l~~~~~~~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 145 IRELLTEFGYKGEETPIIVGSALCALE 171 (397)
T ss_dssp HHHHHHHTTSCTTTSCEEECCHHHHHT
T ss_pred HHHHHHHcCCCcccCcEEEeehhhccc
Confidence 7778888775 3688999999876
No 166
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.28 E-value=5.7e-12 Score=105.18 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=59.7
Q ss_pred CeEEecCCccccccch--------hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASIT--------SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~--------~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
+.||||||+..+...+ ..+++++|++++|||.+++.+... ..|+..+ .+.|+++|+||+|+.. .+.
T Consensus 274 v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~-~~~ 347 (462)
T 3geh_A 274 VQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVE-KQL 347 (462)
T ss_dssp EEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSC-GGG
T ss_pred EEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCc-chh
Confidence 4699999986654332 336889999999999999888765 4555544 3579999999999976 444
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
+. ....+. +...++++||++|.|+++.
T Consensus 348 ~~--~~~~~~---~~~~~i~iSAktg~Gi~eL 374 (462)
T 3geh_A 348 IT--SLEYPE---NITQIVHTAAAQKQGIDSL 374 (462)
T ss_dssp ST--TCCCCT---TCCCEEEEBTTTTBSHHHH
T ss_pred hH--HHHHhc---cCCcEEEEECCCCCCHHHH
Confidence 43 111111 2345889999999999976
No 167
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.27 E-value=1e-11 Score=98.21 Aligned_cols=99 Identities=17% Similarity=0.064 Sum_probs=72.7
Q ss_pred CeEEecCCcc---------ccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC
Q psy17235 1 MQLWDTGGME---------RVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTP 71 (170)
Q Consensus 1 l~iwDt~G~e---------~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~ 71 (170)
+.+|||||+. .+......+++.+|++++|+|.++ +.....|+.+.... .+.|+++++||+|+.. .+
T Consensus 58 i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~-~~~P~ilvlNK~D~~~-~~ 132 (301)
T 1ega_A 58 AIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE-GKAPVILAVNKVDNVQ-EK 132 (301)
T ss_dssp EEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS-SSSCEEEEEESTTTCC-CH
T ss_pred EEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh-cCCCEEEEEECcccCc-cH
Confidence 4689999997 344556778899999999999987 33333454433322 4799999999999865 33
Q ss_pred CCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 72 QVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 72 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
....+....++..++...++++||+++.|+.+.
T Consensus 133 ~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l 165 (301)
T 1ega_A 133 ADLLPHLQFLASQMNFLDIVPISAETGLNVDTI 165 (301)
T ss_dssp HHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHH
T ss_pred HHHHHHHHHHHHhcCcCceEEEECCCCCCHHHH
Confidence 333455666777778767889999999999975
No 168
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.26 E-value=9.7e-12 Score=102.15 Aligned_cols=98 Identities=14% Similarity=0.178 Sum_probs=70.6
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC--CC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDN----AASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ--VT 74 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~----~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~--v~ 74 (170)
+.||||||++.|.......+..+|++|+|+|.++ +++++.+..|. .. ...|+++|+||+|+.+ ... ..
T Consensus 85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~----~~-~~~~iivviNK~Dl~~-~~~~~~~ 158 (410)
T 1kk1_A 85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ----II-GQKNIIIAQNKIELVD-KEKALEN 158 (410)
T ss_dssp EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHH----HH-TCCCEEEEEECGGGSC-HHHHHHH
T ss_pred EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHH----Hc-CCCcEEEEEECccCCC-HHHHHHH
Confidence 4699999999998777777888999999999995 45666654332 22 2358999999999876 221 22
Q ss_pred HHHHHHHHHhc--CCCeEEEcccCCcchhhhH
Q psy17235 75 EADMENFWSRR--SSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 75 ~~~~~~~a~~~--~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+++..+.... ....++++||++|.|+++.
T Consensus 159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L 190 (410)
T 1kk1_A 159 YRQIKEFIEGTVAENAPIIPISALHGANIDVL 190 (410)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHH
T ss_pred HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHH
Confidence 34555666542 2235788999999999865
No 169
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.24 E-value=9.5e-13 Score=106.69 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=59.2
Q ss_pred CeEEecCCc-------cccccchh-------hhccCCcEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHhhCC
Q psy17235 1 MQLWDTGGM-------ERVASITS-------SYYKFAEAA-----------ILVFSLDN-AASFHVLS-QHLLEIVTYAE 53 (170)
Q Consensus 1 l~iwDt~G~-------e~~~~~~~-------~~~~~ad~i-----------ilv~D~t~-~~Sf~~~~-~~~~~i~~~~~ 53 (170)
++||||||+ +.|..++. .|+++++++ +++|++++ ..++..+. .|+..+ ..
T Consensus 97 l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~ 173 (361)
T 2qag_A 97 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HN 173 (361)
T ss_dssp EEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS
T ss_pred eEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---cc
Confidence 479999999 88888887 888776665 37777776 56666664 455443 36
Q ss_pred CCeEEEEeeCCCCCCCCCCCCH--HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 54 NAKIFLCGNKSDLEGTTPQVTE--ADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 54 ~~pvvlvgnK~Dl~~~~~~v~~--~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++|+|+|+||+|+.. .+.+.. +++..++..++++ |+++||+++.+ ++.
T Consensus 174 ~~piIlV~NK~Dl~~-~~ev~~~k~~i~~~~~~~~i~-~~~~Sa~~~~~-~e~ 223 (361)
T 2qag_A 174 KVNIVPVIAKADTLT-LKERERLKKRILDEIEEHNIK-IYHLPDAESDE-DED 223 (361)
T ss_dssp -SCEEEEEECCSSSC-HHHHHHHHHHHHHHTTCC-CC-SCCCC----------
T ss_pred CCCEEEEEECCCCCC-HHHHHHHHHHHHHHHHHCCCC-EEeCCCcCCCc-chh
Confidence 799999999999987 556655 5788888888885 55899999988 555
No 170
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.24 E-value=3.6e-11 Score=92.55 Aligned_cols=103 Identities=19% Similarity=0.159 Sum_probs=65.1
Q ss_pred CeEEecCCccccccc-----------hhhhccCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhC-CCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERVASI-----------TSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYA-ENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~~~~-----------~~~~~~~ad~iilv~D~t~~~Sf-~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~ 67 (170)
+.||||||+..+... ...+++++|++|+|||+++.... ..+..|+.++.... ...++++++||+|+.
T Consensus 73 i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~ 152 (260)
T 2xtp_A 73 IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN 152 (260)
T ss_dssp EEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred EEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC
Confidence 469999998765322 23378999999999999863332 22334444432221 234455555599997
Q ss_pred CCCCCCCH-------HHHHHHHHhcCCCe--E--EEcccCCcchhhhHH
Q psy17235 68 GTTPQVTE-------ADMENFWSRRSSRR--F--KPQEVVEPQEVVEAE 105 (170)
Q Consensus 68 ~~~~~v~~-------~~~~~~a~~~~~~~--~--~e~Sa~~~~~v~~~~ 105 (170)
+ . .+.. +++..++...+..+ | +++||++|.|+.+.+
T Consensus 153 ~-~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~ 199 (260)
T 2xtp_A 153 G-G-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELM 199 (260)
T ss_dssp T-C-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHH
T ss_pred C-c-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHH
Confidence 5 2 2222 34555777766532 3 678999999999873
No 171
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.23 E-value=5.7e-11 Score=96.36 Aligned_cols=101 Identities=18% Similarity=0.113 Sum_probs=71.7
Q ss_pred CeEEecCCc---------cccccchhhhccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGM---------ERVASITSSYYKFAEAAILVFSLDNAA--SFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~---------e~~~~~~~~~~~~ad~iilv~D~t~~~--Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~ 68 (170)
+.+|||+|. +.|...+. .+..+|++++|+|++++. +++.+..|...+.... .+.|+++|+||+|+.+
T Consensus 228 v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 228 IMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp EEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred EEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 368999997 22333333 578999999999999987 6777767766655544 6899999999999865
Q ss_pred CCCCCC--HHHHHHHHHhc-C-CCeEEEcccCCcchhhhH
Q psy17235 69 TTPQVT--EADMENFWSRR-S-SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 69 ~~~~v~--~~~~~~~a~~~-~-~~~~~e~Sa~~~~~v~~~ 104 (170)
.. +. .+.+..+++.+ . .+.++++||+++.|+++.
T Consensus 307 -~~-~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L 344 (364)
T 2qtf_A 307 -GD-LYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELL 344 (364)
T ss_dssp -SC-HHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHH
T ss_pred -ch-HHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHH
Confidence 22 11 12333445555 2 235789999999999976
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.21 E-value=2.3e-11 Score=110.22 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=71.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCC---CCHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQ---VTEA 76 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~---v~~~ 76 (170)
+.||||||++.|...+..+++.+|++|+|+|.++....+ ...|+..+... ++| +||++||+|+.+ ... ...+
T Consensus 361 I~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv~-d~e~le~i~e 436 (1289)
T 3avx_A 361 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMVD-DEELLELVEM 436 (1289)
T ss_dssp EEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTCC-CHHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeeccccc-chhhHHHHHH
Confidence 479999999999988889999999999999999864433 33455444443 688 789999999975 222 1235
Q ss_pred HHHHHHHhcCC----CeEEEcccCCcc
Q psy17235 77 DMENFWSRRSS----RRFKPQEVVEPQ 99 (170)
Q Consensus 77 ~~~~~a~~~~~----~~~~e~Sa~~~~ 99 (170)
++..+++.+++ ..|+++||++|.
T Consensus 437 Ei~elLk~~G~~~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 437 EVRELLSQYDFPGDDTPIVRGSALKAL 463 (1289)
T ss_dssp HHHHHHHHTTSCTTTCCEEECCSTTTT
T ss_pred HHHHHHHhccccccceeEEEEEeccCC
Confidence 67778887774 358899999993
No 173
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.19 E-value=1.1e-10 Score=96.58 Aligned_cols=101 Identities=11% Similarity=0.039 Sum_probs=66.2
Q ss_pred CeEEecCCccccccc-----------h-hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASI-----------T-SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~-----------~-~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.+|||+|+.++..+ . ..+++.+|++++|+|.++..++... .+...+.. .+.|+++|+||+|+.+
T Consensus 230 ~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 230 YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVV 306 (439)
T ss_dssp EEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGST
T ss_pred EEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCC
Confidence 368999998543222 1 3467889999999999988777653 22222222 4799999999999976
Q ss_pred CCCCCCHHHHH-HHHHhc---CCCeEEEcccCCcchhhhHH
Q psy17235 69 TTPQVTEADME-NFWSRR---SSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 69 ~~~~v~~~~~~-~~a~~~---~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+.++.++.. .+.+.+ +...++++||++|.||++.+
T Consensus 307 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 346 (439)
T 1mky_A 307 -HREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMI 346 (439)
T ss_dssp -TGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHH
T ss_pred -chhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHH
Confidence 4555444433 222222 23357789999999999763
No 174
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.17 E-value=4.9e-11 Score=90.74 Aligned_cols=93 Identities=14% Similarity=0.106 Sum_probs=60.4
Q ss_pred CeEEecCC-----------ccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCC
Q psy17235 1 MQLWDTGG-----------MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDL 66 (170)
Q Consensus 1 l~iwDt~G-----------~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl 66 (170)
+.|||||| ++.+...+..+++++|++|+|+|+++..+- ...|+..+.... ...|++||+||+|+
T Consensus 80 i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 80 LVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp EEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred EEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 47999999 445566667778899999999999865442 123444433222 34699999999998
Q ss_pred CCCCCCCC------HHHHHHHHHhcCCCeEEEcccCC
Q psy17235 67 EGTTPQVT------EADMENFWSRRSSRRFKPQEVVE 97 (170)
Q Consensus 67 ~~~~~~v~------~~~~~~~a~~~~~~~~~e~Sa~~ 97 (170)
.. .+.+. .+.++.+++..+.. |...+...
T Consensus 158 ~~-~~~~~~~i~~~~~~l~~l~~~~~~~-~~~~~~~~ 192 (239)
T 3lxx_A 158 LG-DTNLHDYLREAPEDIQDLMDIFGDR-YCALNNKA 192 (239)
T ss_dssp C-------------CHHHHHHHHHHSSS-EEECCTTC
T ss_pred CC-cccHHHHHHhchHHHHHHHHHcCCE-EEEEECCC
Confidence 66 44443 34678888888875 44455543
No 175
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.15 E-value=1.5e-10 Score=100.91 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=52.9
Q ss_pred CeEEecCCccc---cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMER---VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~---~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.||||||... ....+..|++++|++|+|+|.+++.+......|...+.. .+.|+++|+||+|+..
T Consensus 176 l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 176 IEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVR 244 (695)
T ss_dssp EEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGG
T ss_pred eEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECccccc
Confidence 46899999654 345677889999999999999999888877767554433 3678999999999865
No 176
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.13 E-value=7e-11 Score=98.30 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=65.4
Q ss_pred CeEEecCC--------ccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCC
Q psy17235 1 MQLWDTGG--------MERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 1 l~iwDt~G--------~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~ 72 (170)
++|||||| ++.+...+..+++++|++|+|+|.++..+.. ..|+.++... .+.|++||+||+|+.. .+
T Consensus 73 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~~-~~~pvilV~NK~D~~~-~~- 147 (456)
T 4dcu_A 73 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA--DEEVAKILYR-TKKPVVLAVNKLDNTE-MR- 147 (456)
T ss_dssp CEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH--HHHHHHHHTT-CCSCEEEEEECC--------
T ss_pred EEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH--HHHHHHHHHH-cCCCEEEEEECccchh-hh-
Confidence 57999999 8888889999999999999999987754433 3454444433 5899999999999865 21
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+..++. ..+....+++||++|.|+.+.
T Consensus 148 ---~~~~e~~-~lg~~~~~~iSA~~g~gv~~L 175 (456)
T 4dcu_A 148 ---ANIYDFY-SLGFGEPYPISGTHGLGLGDL 175 (456)
T ss_dssp ------CCSG-GGSSSSEEECCTTTCTTHHHH
T ss_pred ---hhHHHHH-HcCCCceEEeecccccchHHH
Confidence 1111121 345544568999999999975
No 177
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.10 E-value=1.8e-11 Score=105.01 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=60.7
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGT 69 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~----------~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~ 69 (170)
+.||||||++.|...+..+++.+|++|+|+|.++. ++.+.+ ..+.. .++| +|||+||+|+.+
T Consensus 257 i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~--lgip~iIvviNKiDl~~- 329 (592)
T 3mca_A 257 YEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRA--LGISEIVVSVNKLDLMS- 329 (592)
T ss_dssp --CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHH--SSCCCEEEEEECGGGGT-
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHHH--cCCCeEEEEEecccccc-
Confidence 47899999999999999999999999999999853 333332 22222 2565 999999999864
Q ss_pred CCCC----CHHHHHHHH-HhcCCC----eEEEcccCCcchhhh
Q psy17235 70 TPQV----TEADMENFW-SRRSSR----RFKPQEVVEPQEVVE 103 (170)
Q Consensus 70 ~~~v----~~~~~~~~a-~~~~~~----~~~e~Sa~~~~~v~~ 103 (170)
...- ...+...+. +..|+. .|+++||++|.||.+
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e 372 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCS
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccc
Confidence 1111 123444555 555663 588999999999983
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.07 E-value=7.4e-11 Score=95.23 Aligned_cols=100 Identities=16% Similarity=0.095 Sum_probs=73.5
Q ss_pred CeEEecCCcccc-------------ccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCC
Q psy17235 1 MQLWDTGGMERV-------------ASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDL 66 (170)
Q Consensus 1 l~iwDt~G~e~~-------------~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl 66 (170)
++||||||...+ ..+...|++++|++|+|+|.++..... ..|+..+.... .+.|+++|+||+|+
T Consensus 138 l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~Dl 215 (360)
T 3t34_A 138 LTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKIDL 215 (360)
T ss_dssp EEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGGG
T ss_pred eEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCcc
Confidence 479999998876 667889999999999999876654332 24544444443 46899999999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 67 EGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 67 ~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+ ......+.+..++..++.+ |+++|++++.++++.
T Consensus 216 ~~-~~~~~~~~~~~~~~~~~~~-~~~v~~~s~~~i~~~ 251 (360)
T 3t34_A 216 MD-KGTDAVEILEGRSFKLKYP-WVGVVNRSQADINKN 251 (360)
T ss_dssp CC-TTCCSHHHHTTSSSCCSSC-CEEECCCCHHHHHTT
T ss_pred CC-CcccHHHHHcCccccccCC-eEEEEECChHHhccC
Confidence 76 5555555555555556665 667899999988764
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.06 E-value=2.5e-10 Score=96.70 Aligned_cols=98 Identities=12% Similarity=0.020 Sum_probs=70.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
+.||||||++.|...+..+++.+|++|+|+|.++...-.. ..++..+.. .++|+++++||+|+.. .. ..+...+
T Consensus 84 i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~~-~~--~~~~~~~ 157 (529)
T 2h5e_A 84 VNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRDI-RD--PMELLDE 157 (529)
T ss_dssp EEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSCC-SC--HHHHHHH
T ss_pred EEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCcc-cc--HHHHHHH
Confidence 4799999999999888899999999999999998644322 222222222 4799999999999976 22 2344555
Q ss_pred HHHhcCCC----eEEEcccCCcchhhhH
Q psy17235 81 FWSRRSSR----RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~~----~~~e~Sa~~~~~v~~~ 104 (170)
+...++.. .+..+|++++.|+.+.
T Consensus 158 i~~~l~~~~~~~~~pi~sa~~~~Gv~dl 185 (529)
T 2h5e_A 158 VENELKIGCAPITWPIGCGKLFKGVYHL 185 (529)
T ss_dssp HHHHHCCEEEESEEEESCGGGCCEEEET
T ss_pred HHHHhCCCccceecceecccCcceeeeh
Confidence 66666653 2455788888887654
No 180
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.05 E-value=4e-10 Score=91.47 Aligned_cols=90 Identities=16% Similarity=0.174 Sum_probs=70.9
Q ss_pred CccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH----HH
Q psy17235 8 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF----WS 83 (170)
Q Consensus 8 G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~----a~ 83 (170)
.++.|.++++.+++.++++++|+|++|+. ..|.+.+.+...+.|+++|+||+|+.. ..+..++..++ ++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~--~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIP--KSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSC--TTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCC--cccCHHHHHHHHHHHHH
Confidence 35778899999999999999999999864 467777777777899999999999965 23444444444 66
Q ss_pred hcCCC--eEEEcccCCcchhhhH
Q psy17235 84 RRSSR--RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 84 ~~~~~--~~~e~Sa~~~~~v~~~ 104 (170)
..|.. .++.+||++|.|+++.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L 150 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAEL 150 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHH
Confidence 66763 5778999999999976
No 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.03 E-value=3.5e-10 Score=87.41 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=54.5
Q ss_pred CeEEecCCccccccchhhhcc---------CCcEEEEEEeCCChhhHHHH-HHHHHHHHhhC-CC--CeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYK---------FAEAAILVFSLDNAASFHVL-SQHLLEIVTYA-EN--AKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~---------~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~-~~--~pvvlvgnK~Dl~ 67 (170)
+.||||||++.|..+...+++ ++|++++|+|++... +... ..|+..+.... .+ .|+++|+||+|+.
T Consensus 86 l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 86 INIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred EEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 479999999988777666665 889999999998765 4333 46777776654 22 4999999999996
Q ss_pred CCCCCCCHH
Q psy17235 68 GTTPQVTEA 76 (170)
Q Consensus 68 ~~~~~v~~~ 76 (170)
. .+..+.+
T Consensus 165 ~-~~~~~~e 172 (262)
T 3def_A 165 P-PDELSYE 172 (262)
T ss_dssp C-STTCCHH
T ss_pred C-CCCccHH
Confidence 5 3444433
No 182
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.99 E-value=1.4e-09 Score=80.41 Aligned_cols=98 Identities=9% Similarity=0.068 Sum_probs=67.5
Q ss_pred eEEecCCccc----------cccchhhhc---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 2 QLWDTGGMER----------VASITSSYY---KFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 2 ~iwDt~G~e~----------~~~~~~~~~---~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
.+|||||+.. +......++ +.++++++|+|++++.++.. +..|+.. .++|+++++||+|+
T Consensus 75 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~ 149 (210)
T 1pui_A 75 RLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADK 149 (210)
T ss_dssp EEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGG
T ss_pred EEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccC
Confidence 6899999742 333334455 57899999999998776642 3344321 47899999999997
Q ss_pred CCC-CCCCCHHHHHHHHHhcCC-CeEEEcccCCcchhhhH
Q psy17235 67 EGT-TPQVTEADMENFWSRRSS-RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 67 ~~~-~~~v~~~~~~~~a~~~~~-~~~~e~Sa~~~~~v~~~ 104 (170)
... .++...+.+..++.+.+. ..++++||+++.++.+.
T Consensus 150 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l 189 (210)
T 1pui_A 150 LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKL 189 (210)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHH
Confidence 641 122223556666666653 46889999999999976
No 183
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.98 E-value=1.7e-09 Score=93.98 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=52.2
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~ 67 (170)
++||||||++.|...+..+++.+|++++|+|.++..+.... .|+..+.. .++|+++++||+|+.
T Consensus 76 ~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 76 VFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCEEEEEECGGGC
T ss_pred EEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH--ccCCEEEEecCCchh
Confidence 47999999999999999999999999999999876554433 44444444 379999999999985
No 184
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.97 E-value=1.4e-09 Score=85.61 Aligned_cols=97 Identities=15% Similarity=0.077 Sum_probs=57.5
Q ss_pred CeEEecCCccc-------------cccchhhhccCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 1 MQLWDTGGMER-------------VASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 1 l~iwDt~G~e~-------------~~~~~~~~~~~ad~iilv~D~t~~~Sf-~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
+.||||||... +..++..+++++|++++|+|.++.... .....+...+.. .+.|+++|+||+|+
T Consensus 133 ~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl 210 (315)
T 1jwy_B 133 LTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKLDL 210 (315)
T ss_dssp EEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECTTS
T ss_pred cEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCccc
Confidence 46899999753 556778899999999999997543211 111122222221 47899999999998
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchh
Q psy17235 67 EGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEV 101 (170)
Q Consensus 67 ~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v 101 (170)
.. ......+.........+ ..|+++|+.++.++
T Consensus 211 ~~-~~~~~~~~~~~~~~~~~-~~~~~v~~~sa~~~ 243 (315)
T 1jwy_B 211 MD-KGTDAMEVLTGRVIPLT-LGFIGVINRSQEDI 243 (315)
T ss_dssp SC-SSCCCHHHHTTSSSCCT-TCEEECCCCCHHHH
T ss_pred CC-cchHHHHHHhCCCccCC-CCeEEEecCChhhh
Confidence 76 33322222221001111 34667777776553
No 185
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.93 E-value=6.6e-10 Score=98.79 Aligned_cols=74 Identities=19% Similarity=0.172 Sum_probs=60.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~ 77 (170)
++||||||+..|...+..+++.+|++|+|||.++..+++....|.... . .++|+++++||+|+......+++++
T Consensus 100 i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~--~~~p~ilviNK~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G--ERIKPVVVINKVDRALLELQVSKED 173 (842)
T ss_dssp EEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H--TTCEEEEEEECHHHHHHTSCCCHHH
T ss_pred EEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H--cCCCeEEEEECCCcchhhhccCHHH
Confidence 479999999999999999999999999999999999998877675433 2 4799999999999863234455544
No 186
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.91 E-value=3.9e-09 Score=80.98 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=55.2
Q ss_pred CeEEecCCc--------cccccchhhhc----cCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhC-CCCeEEEEeeCCCC
Q psy17235 1 MQLWDTGGM--------ERVASITSSYY----KFAEAAILVFSLDNAASF-HVLSQHLLEIVTYA-ENAKIFLCGNKSDL 66 (170)
Q Consensus 1 l~iwDt~G~--------e~~~~~~~~~~----~~ad~iilv~D~t~~~Sf-~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl 66 (170)
+.||||||. +.+......++ +++|++|+|+|+++.... ..+..|+.++.... .+.|+||++||.|+
T Consensus 72 i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 72 VEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp EEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred EEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 479999996 44433333333 899999999999863222 12223443332111 37899999999999
Q ss_pred CCCCCC------CCHHHHHHHHHhcCCCeE
Q psy17235 67 EGTTPQ------VTEADMENFWSRRSSRRF 90 (170)
Q Consensus 67 ~~~~~~------v~~~~~~~~a~~~~~~~~ 90 (170)
.+ ... ...++.+.+.+..|..++
T Consensus 152 ~~-~~~~~~l~~~~~~~l~~l~~~~g~~~~ 180 (247)
T 3lxw_A 152 AG-GSLHDYVSNTENRALRELVAECGGRVC 180 (247)
T ss_dssp TT-CCHHHHHHHCCCHHHHHHHHHTTTCEE
T ss_pred CC-CCHHHHHhhcccHHHHHHHHHcCCeEE
Confidence 65 211 112456778888887543
No 187
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.90 E-value=2.1e-09 Score=87.23 Aligned_cols=90 Identities=11% Similarity=0.089 Sum_probs=69.7
Q ss_pred CccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH----HH
Q psy17235 8 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF----WS 83 (170)
Q Consensus 8 G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~----a~ 83 (170)
.++.|.++.+.++++++++++|+|++++.+ .|.+++.+...+.|+++|+||+|+.. ..+..+...++ ++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~--~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLP--RSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSC--TTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCC--CccCHHHHHHHHHHHHH
Confidence 478899999999999999999999999875 56666666667899999999999865 23344444433 56
Q ss_pred hcCC--CeEEEcccCCcchhhhH
Q psy17235 84 RRSS--RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 84 ~~~~--~~~~e~Sa~~~~~v~~~ 104 (170)
..|. ..++.+||++|.|+++.
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L 152 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKV 152 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHH
Confidence 6676 35778999999999975
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.88 E-value=1.8e-09 Score=94.23 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=55.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.||||||+..|...+..+++.+|++|+|+|.++..++.....|.. +.. .++|+++|+||+|+..
T Consensus 77 i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~--~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 77 VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT--YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp EEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred EEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence 4799999999999999999999999999999999888877766643 333 3799999999999876
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.87 E-value=1.4e-09 Score=87.67 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=59.6
Q ss_pred CeEEecCCcc-------------ccccchhhhccCCcEEEEEE-eCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 1 MQLWDTGGME-------------RVASITSSYYKFAEAAILVF-SLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 1 l~iwDt~G~e-------------~~~~~~~~~~~~ad~iilv~-D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
+.||||||.. .+..+...|+++++.+++++ |.+....-.....++..+.. .+.|+++|+||+|+
T Consensus 132 l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~--~~~~~i~V~NK~Dl 209 (353)
T 2x2e_A 132 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDP--QGQRTIGVITKLDL 209 (353)
T ss_dssp EEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT--TCTTEEEEEECGGG
T ss_pred cEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCc--CCCceEEEeccccc
Confidence 4699999963 45567788888777666655 44432111112223333322 47899999999998
Q ss_pred CCCCCCCCHHHHHH--HHHhcCCCeEEEcccCCcchhhhHH
Q psy17235 67 EGTTPQVTEADMEN--FWSRRSSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 67 ~~~~~~v~~~~~~~--~a~~~~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.+ ......+.... +....+...++.+||+++.|+++.+
T Consensus 210 ~~-~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~ 249 (353)
T 2x2e_A 210 MD-EGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDIT 249 (353)
T ss_dssp SC-TTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHH
T ss_pred cC-cchhHHHHHhCCcccccCCceEEEeCCcccccccccHH
Confidence 76 32211111110 0111233346679999999999873
No 190
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.86 E-value=1.2e-08 Score=84.04 Aligned_cols=99 Identities=13% Similarity=0.129 Sum_probs=72.6
Q ss_pred CeEEecCCccc----cccchhhh---ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCCCC
Q psy17235 1 MQLWDTGGMER----VASITSSY---YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEGTT 70 (170)
Q Consensus 1 l~iwDt~G~e~----~~~~~~~~---~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~~~ 70 (170)
+.+||++|... +..+...+ ...++.++.++|++ +.++..+..|..++..+. .+.|.+||+||+|+.. .
T Consensus 207 ~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~-~ 284 (416)
T 1udx_A 207 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE-E 284 (416)
T ss_dssp EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC-H
T ss_pred EEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh-H
Confidence 46899999743 23343333 34799999999998 778888888888877664 3688999999999876 2
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 71 PQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 71 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
...++..+..+..+.+ ++.+||+++.|+++.
T Consensus 285 --~~~~~l~~~l~~~g~~-vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 285 --EAVKALADALAREGLA-VLPVSALTGAGLPAL 315 (416)
T ss_dssp --HHHHHHHHHHHTTTSC-EEECCTTTCTTHHHH
T ss_pred --HHHHHHHHHHHhcCCe-EEEEECCCccCHHHH
Confidence 2234444555555654 678999999999976
No 191
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.85 E-value=5.2e-09 Score=81.10 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=51.2
Q ss_pred CeEEecCCccccccchhh---------hccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhCC-C--CeEEEEeeCCCCC
Q psy17235 1 MQLWDTGGMERVASITSS---------YYKFAEAAILVFSLDNAASFHVL-SQHLLEIVTYAE-N--AKIFLCGNKSDLE 67 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~---------~~~~ad~iilv~D~t~~~Sf~~~-~~~~~~i~~~~~-~--~pvvlvgnK~Dl~ 67 (170)
+.||||||++.+..+... +.+++|++++|||++.. ++... ..|+..+..... + .|+++|+||+|+.
T Consensus 89 l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 89 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred EEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 479999999877544332 13479999999999764 44433 478877766542 2 6999999999997
Q ss_pred CCCCCCCH
Q psy17235 68 GTTPQVTE 75 (170)
Q Consensus 68 ~~~~~v~~ 75 (170)
. ...++.
T Consensus 168 ~-~~~~~~ 174 (270)
T 1h65_A 168 P-PDGLPY 174 (270)
T ss_dssp C-GGGCCH
T ss_pred C-cCCCCH
Confidence 6 444333
No 192
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.85 E-value=1.9e-09 Score=94.03 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=56.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.||||||+..|...+..+++.+|++|+|+|.++..++.....|.. +.. .++|+++|+||+|+..
T Consensus 79 i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK--YKVPRIAFANKMDKTG 143 (691)
T ss_dssp EEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred EEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence 4799999999999999999999999999999999988887776653 333 3799999999999876
No 193
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.82 E-value=2.2e-09 Score=83.41 Aligned_cols=99 Identities=8% Similarity=0.067 Sum_probs=53.0
Q ss_pred CeEEecCCcc-------ccccch-------hhhccC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHhhCC
Q psy17235 1 MQLWDTGGME-------RVASIT-------SSYYKF-------------AEAAILVFSLDNAASFHVLSQHLLEIVTYAE 53 (170)
Q Consensus 1 l~iwDt~G~e-------~~~~~~-------~~~~~~-------------ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~ 53 (170)
+.||||||.. .+..+. ..|+.. +|+++++++.+.......-..++..+..
T Consensus 67 l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~--- 143 (274)
T 3t5d_A 67 LTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--- 143 (274)
T ss_dssp EEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---
T ss_pred EEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---
Confidence 4799999973 233333 444443 7899999987763222222345555443
Q ss_pred CCeEEEEeeCCCCCCCCCCCC--HHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 54 NAKIFLCGNKSDLEGTTPQVT--EADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 54 ~~pvvlvgnK~Dl~~~~~~v~--~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++|+|+|+||+|+.. ...+. .+...+.....+++ ++.+||+++.++.+.
T Consensus 144 ~~pvi~V~nK~D~~~-~~e~~~~~~~i~~~l~~~~i~-v~~~sa~~~~~~~~l 194 (274)
T 3t5d_A 144 KVNIIPLIAKADTLT-PEECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKL 194 (274)
T ss_dssp TSCEEEEESSGGGSC-HHHHHHHHHHHHHHHHHTTCC-CCCC-----------
T ss_pred cCCEEEEEeccCCCC-HHHHHHHHHHHHHHHHHcCCe-EEcCCCCCChhHHHH
Confidence 799999999999754 22221 12344455566776 556799999998875
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.81 E-value=8.3e-09 Score=78.99 Aligned_cols=99 Identities=12% Similarity=0.042 Sum_probs=59.2
Q ss_pred CeEEecCCccccccchh------hhccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCC
Q psy17235 1 MQLWDTGGMERVASITS------SYYKFAEAAILVFSLDNAA---SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTP 71 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~------~~~~~ad~iilv~D~t~~~---Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~ 71 (170)
+.||||||+..+..... .++.. +++++++|.+... ++.....+..... ...+.|+++|+||+|+.. ..
T Consensus 111 ~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~~-~~ 187 (262)
T 1yrb_A 111 YVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLS-EE 187 (262)
T ss_dssp EEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCC-HH
T ss_pred EEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEecccccc-cc
Confidence 35899999977544332 14466 8888888875433 3332222211111 114689999999999865 22
Q ss_pred CCCHHHHHH----------------------------HHHhcCCC-eEEEcccCCcchhhhH
Q psy17235 72 QVTEADMEN----------------------------FWSRRSSR-RFKPQEVVEPQEVVEA 104 (170)
Q Consensus 72 ~v~~~~~~~----------------------------~a~~~~~~-~~~e~Sa~~~~~v~~~ 104 (170)
.+ ++..+ ++.+++.. .++++||+++.|+++.
T Consensus 188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l 247 (262)
T 1yrb_A 188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDL 247 (262)
T ss_dssp HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHH
T ss_pred cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHH
Confidence 21 11111 12444432 5788999999999976
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.80 E-value=7.8e-10 Score=87.42 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=54.5
Q ss_pred CeEEecCCc-------cccccchh-------hhccCCc-------------EEEEEEeCCChhhHHHHHHHHHHHHhhCC
Q psy17235 1 MQLWDTGGM-------ERVASITS-------SYYKFAE-------------AAILVFSLDNAASFHVLSQHLLEIVTYAE 53 (170)
Q Consensus 1 l~iwDt~G~-------e~~~~~~~-------~~~~~ad-------------~iilv~D~t~~~Sf~~~~~~~~~i~~~~~ 53 (170)
+++|||+|+ +.+..+.. .|+++.+ +++++.+.+. .+|+.+. ...+....+
T Consensus 78 ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~~ 154 (301)
T 2qnr_A 78 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIHN 154 (301)
T ss_dssp EEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHTT
T ss_pred cchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHHh
Confidence 479999998 66766665 6665443 3444433322 2344433 122333335
Q ss_pred CCeEEEEeeCCCCCCCCCC--CCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 54 NAKIFLCGNKSDLEGTTPQ--VTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 54 ~~pvvlvgnK~Dl~~~~~~--v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++|+++|+||.|+.. .+. +..+++.++++.++++ |+++||+++ |++++
T Consensus 155 ~~~iilV~~K~Dl~~-~~e~~~~~~~~~~~~~~~~~~-~~e~Sa~~~-~v~e~ 204 (301)
T 2qnr_A 155 KVNIVPVIAKADTLT-LKERERLKKRILDEIEEHNIK-IYHLPDAES-DEDED 204 (301)
T ss_dssp TSCEEEEECCGGGSC-HHHHHHHHHHHHHHHHHTTCC-CCCCC----------
T ss_pred cCCEEEEEEeCCCCC-HHHHHHHHHHHHHHHHHcCCe-EEecCCccc-cccHH
Confidence 789999999999876 433 3456888999999985 668999999 99987
No 196
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.74 E-value=2.1e-08 Score=87.62 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=54.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.||||||+..|...+..+++.+|++|+|+|.++..+......|. .... .++|+++++||+|+..
T Consensus 84 i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~--~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 84 INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK--YKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH--cCCCEEEEEeCCCccc
Confidence 479999999999999999999999999999999887766655553 2222 3799999999999876
No 197
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.71 E-value=1.2e-08 Score=76.12 Aligned_cols=91 Identities=10% Similarity=-0.037 Sum_probs=61.6
Q ss_pred eEEecCCccccccchhhh-ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSY-YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~-~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
.+|||+|+-. .+.+ ...++++++|+|.++.... ...+... .+.|+++|+||+|+.+ .+.+..++...
T Consensus 112 iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~-----~~~~~iiv~NK~Dl~~-~~~~~~~~~~~ 179 (221)
T 2wsm_A 112 LLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDDV--VEKHPEI-----FRVADLIVINKVALAE-AVGADVEKMKA 179 (221)
T ss_dssp EEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTTH--HHHCHHH-----HHTCSEEEEECGGGHH-HHTCCHHHHHH
T ss_pred EEEeCCCCCC----CCchhccccCcEEEEEeCCCcchh--hhhhhhh-----hhcCCEEEEecccCCc-chhhHHHHHHH
Confidence 4899998611 1222 2367899999998875431 1112111 1478999999999865 33456777777
Q ss_pred HHHhcCC-CeEEEcccCCcchhhhH
Q psy17235 81 FWSRRSS-RRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~~~~-~~~~e~Sa~~~~~v~~~ 104 (170)
+++..+. ..++++||++|.|+++.
T Consensus 180 ~~~~~~~~~~i~~~Sa~~g~gi~~l 204 (221)
T 2wsm_A 180 DAKLINPRAKIIEMDLKTGKGFEEW 204 (221)
T ss_dssp HHHHHCTTSEEEECBTTTTBTHHHH
T ss_pred HHHHhCCCCeEEEeecCCCCCHHHH
Confidence 7776642 46789999999999976
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.70 E-value=5.9e-08 Score=77.81 Aligned_cols=94 Identities=12% Similarity=0.085 Sum_probs=55.8
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH--HHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE--ADM 78 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~--~~~ 78 (170)
+.||||||..... ....+.+|++++|+|.++...+..+... . .+.|.++|+||+|+.+ ...+.. ++.
T Consensus 151 i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~----~~~p~ivv~NK~Dl~~-~~~~~~~~~~l 219 (341)
T 2p67_A 151 VVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKG---L----MEVADLIVINKDDGDN-HTNVAIARHMY 219 (341)
T ss_dssp EEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHH---H----HHHCSEEEECCCCTTC-HHHHHHHHHHH
T ss_pred EEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHHh---h----hcccCEEEEECCCCCC-hHHHHHHHHHH
Confidence 3689999965432 2346899999999999765443222111 1 1468899999999865 211111 122
Q ss_pred HHHHHhcC------CCeEEEcccCCcchhhhHH
Q psy17235 79 ENFWSRRS------SRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 79 ~~~a~~~~------~~~~~e~Sa~~~~~v~~~~ 105 (170)
.......+ .+.++.+||++|.|+++..
T Consensus 220 ~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~ 252 (341)
T 2p67_A 220 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIW 252 (341)
T ss_dssp HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHH
T ss_pred HHHHHhccccccCCCCcEEEeeCCCCCCHHHHH
Confidence 22222222 3567899999999999873
No 199
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.66 E-value=5.9e-08 Score=78.16 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=58.4
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
+.||||||.. .........+|++++|+|.+..+.+..+..+ ..+.|+++|+||+|+.. ..... ....+
T Consensus 174 ~iiiDTpGi~---~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl~~-~~~~~-~~~~~ 241 (355)
T 3p32_A 174 VILIETVGVG---QSEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADGEH-HKEAR-LAARE 241 (355)
T ss_dssp EEEEEECSCS---SHHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCGGG-HHHHH-HHHHH
T ss_pred EEEEeCCCCC---cHHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCCcC-hhHHH-HHHHH
Confidence 3689999942 2233446899999999998776655333211 12469999999999854 11111 11122
Q ss_pred HHHh---c-----C-CCeEEEcccCCcchhhhH
Q psy17235 81 FWSR---R-----S-SRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 81 ~a~~---~-----~-~~~~~e~Sa~~~~~v~~~ 104 (170)
+... . + .+.++.+||++|.|+++.
T Consensus 242 l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L 274 (355)
T 3p32_A 242 LSAAIRLIYPREALWRPPVLTMSAVEGRGLAEL 274 (355)
T ss_dssp HHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHH
T ss_pred HHHHHhhccccccCCCCceEEEEcCCCCCHHHH
Confidence 2222 1 1 134778999999999987
No 200
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.65 E-value=1e-08 Score=84.46 Aligned_cols=99 Identities=9% Similarity=0.087 Sum_probs=57.2
Q ss_pred CeEEecCCccccc-------c------------------chhhhccCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhhCC
Q psy17235 1 MQLWDTGGMERVA-------S------------------ITSSYYKFAEAAILVFSLDNA-ASFHVLS-QHLLEIVTYAE 53 (170)
Q Consensus 1 l~iwDt~G~e~~~-------~------------------~~~~~~~~ad~iilv~D~t~~-~Sf~~~~-~~~~~i~~~~~ 53 (170)
+++|||+|...+. . +...+++++++.+++|+.+.. .+|..+. .|+..+. .
T Consensus 90 Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~ 166 (418)
T 2qag_C 90 LTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---E 166 (418)
T ss_dssp EEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---T
T ss_pred eeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---c
Confidence 4699999986542 1 223456677766666666543 4555553 5776664 4
Q ss_pred CCeEEEEeeCCCCCCCCCCCCH--HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 54 NAKIFLCGNKSDLEGTTPQVTE--ADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 54 ~~pvvlvgnK~Dl~~~~~~v~~--~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
++|+|+|+||+|+.. .+.+.. +++..++..+++++ +++|++++.++.++
T Consensus 167 ~v~iIlVinK~Dll~-~~ev~~~k~~i~~~~~~~~i~~-~~~sa~~~~~v~~~ 217 (418)
T 2qag_C 167 KVNIIPLIAKADTLT-PEECQQFKKQIMKEIQEHKIKI-YEFPETDDEEENKL 217 (418)
T ss_dssp TSEEEEEEESTTSSC-HHHHHHHHHHHHHHHHHHTCCC-CCCC----------
T ss_pred cCcEEEEEEcccCcc-HHHHHHHHHHHHHHHHHcCCeE-EeCCCCCCcCHHHH
Confidence 799999999999876 566665 67888888888864 47899999888764
No 201
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.60 E-value=4e-08 Score=80.47 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=21.8
Q ss_pred CeEEecCCccc----cccchh---hhccCCcEEEEEEeCCCh
Q psy17235 1 MQLWDTGGMER----VASITS---SYYKFAEAAILVFSLDNA 35 (170)
Q Consensus 1 l~iwDt~G~e~----~~~~~~---~~~~~ad~iilv~D~t~~ 35 (170)
++||||||+.. +..+.. .+++++|++++|+|.++.
T Consensus 73 i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 73 VKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 46999999854 333443 457899999999999886
No 202
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.59 E-value=2e-08 Score=85.41 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=53.4
Q ss_pred CeEEecCCccc-----------cccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMER-----------VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~-----------~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.||||||... |..++..++..+|++|+|+|.++.........|+..+... +.|+++|+||+|+.+
T Consensus 156 l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 156 ISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDKIRVVLNKADMVE 232 (550)
T ss_dssp CEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGGEEEEEECGGGSC
T ss_pred EEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCCEEEEEECCCccC
Confidence 57999999865 5567778899999999999999876666666777665443 589999999999865
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.33 E-value=1.4e-05 Score=64.26 Aligned_cols=92 Identities=11% Similarity=0.032 Sum_probs=52.4
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF 81 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~ 81 (170)
.|+||+|.. .........+|++++|+|.++......+.. .+ -..|.++|.||+|+.+ .... ......+
T Consensus 170 iliDT~Gi~---~~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~-~~~~-~~~~~~l 237 (349)
T 2www_A 170 ILIETVGVG---QSEFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDL-IVPA-RRIQAEY 237 (349)
T ss_dssp EEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGG-HHHH-HHHHHHH
T ss_pred EEEECCCcc---hhhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCC-chhH-HHHHHHH
Confidence 589999952 123445789999999999987654332221 11 2468899999999853 1110 0112222
Q ss_pred HHhc---------CCCeEEEcccCCcchhhhHH
Q psy17235 82 WSRR---------SSRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 82 a~~~---------~~~~~~e~Sa~~~~~v~~~~ 105 (170)
.... ..+.++.+||++|.|+++..
T Consensus 238 ~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~ 270 (349)
T 2www_A 238 VSALKLLRKRSQVWKPKVIRISARSGEGISEMW 270 (349)
T ss_dssp HHHHTTCC-----CCCEEEECCTTTCTTHHHHH
T ss_pred HHHHHhcCccccCCCceEEEEecCCCCCHHHHH
Confidence 2111 12457789999999999873
No 204
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.33 E-value=1.1e-06 Score=68.62 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=58.8
Q ss_pred EEecCCcc-ccccchhhhccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHH
Q psy17235 3 LWDTGGME-RVASITSSYYKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 3 iwDt~G~e-~~~~~~~~~~~~ad~iilv~D~t~~~Sf~--~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~ 79 (170)
|-+.|||. .........+.++|+++.|+|..+|.+.. .+..|+ .+.|+++|+||+|+.+ .+..+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~------~~~~~ 69 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKAD------AAVTQ 69 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSC------HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCC------HHHHH
Confidence 44568875 33444556788999999999999998875 333343 5799999999999865 22233
Q ss_pred H---HHHhcCCCeEEEcccCCcchhhhH
Q psy17235 80 N---FWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 80 ~---~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
. +.++.|.+ ++.+||+++.|+.+.
T Consensus 70 ~~~~~~~~~g~~-~i~iSA~~~~gi~~L 96 (282)
T 1puj_A 70 QWKEHFENQGIR-SLSINSVNGQGLNQI 96 (282)
T ss_dssp HHHHHHHTTTCC-EEECCTTTCTTGGGH
T ss_pred HHHHHHHhcCCc-EEEEECCCcccHHHH
Confidence 3 33344664 567899999999976
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.31 E-value=1.4e-09 Score=81.41 Aligned_cols=51 Identities=16% Similarity=0.021 Sum_probs=39.9
Q ss_pred CCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcC-CCeEEEcccCCcchhhhHH
Q psy17235 54 NAKIFLCGNKSDLEGTTPQVTEADMENFWSRRS-SRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 54 ~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~-~~~~~e~Sa~~~~~v~~~~ 105 (170)
..|.++|+||+|+.+ .+.+..+++..+++..+ ...++++||++|.|+++.+
T Consensus 164 ~~~~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 215 (226)
T 2hf9_A 164 KTADLIVINKIDLAD-AVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVL 215 (226)
T ss_dssp TTCSEEEEECGGGHH-HHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHH
T ss_pred hcCCEEEEeccccCc-hhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHH
Confidence 356799999999875 44567788888887764 3468899999999999763
No 206
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.29 E-value=2.9e-06 Score=68.61 Aligned_cols=48 Identities=6% Similarity=-0.038 Sum_probs=32.8
Q ss_pred CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhh
Q psy17235 53 ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVV 102 (170)
Q Consensus 53 ~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~ 102 (170)
...|+++++|+.|..- ....-......++...+.+ ++++||+....+.
T Consensus 198 t~KPvi~v~N~~e~~~-~~n~~~~~v~~~~~~~~~~-~i~~sA~~E~el~ 245 (363)
T 1jal_A 198 TLKPTMYIANVNEDGF-ENNPYLDRVREIAAKEGAV-VVPVCAAIESEIA 245 (363)
T ss_dssp TTSCEEEEEECCTTCS-SSCHHHHHHHHHHHHTTCE-EEEECHHHHHHGG
T ss_pred cCCcEEEEEecccccc-cccHHHHHHHHHHHHcCCC-EEEechHHHHHHH
Confidence 3579999999999642 2233456677888888874 6678887554443
No 207
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.15 E-value=5.5e-06 Score=67.11 Aligned_cols=50 Identities=6% Similarity=-0.019 Sum_probs=35.5
Q ss_pred CCeEEEEeeCCCCC--CCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 54 NAKIFLCGNKSDLE--GTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 54 ~~pvvlvgnK~Dl~--~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..|+++++||.|.. +..+......+..+++..|. .++++||+...++.+.
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~-~vv~iSAk~E~el~eL 252 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGA-EVVVVSARLEAELAEL 252 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTC-EEEEECHHHHHHHHTS
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCC-eEEEeechhHHHHHHh
Confidence 46999999999842 20113445678888888886 4678899988777654
No 208
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.10 E-value=9.8e-06 Score=71.24 Aligned_cols=99 Identities=11% Similarity=0.001 Sum_probs=60.7
Q ss_pred CeEEecCCccc-------------cccchhhhc-cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 1 MQLWDTGGMER-------------VASITSSYY-KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 1 l~iwDt~G~e~-------------~~~~~~~~~-~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
+.|+||||-.. +..+...|+ ..+|++++|.|.++..+-.....++..+.. .+.|+++|.||+|+
T Consensus 152 L~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~--~g~pvIlVlNKiDl 229 (772)
T 3zvr_A 152 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDL 229 (772)
T ss_dssp EEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT--TCSSEEEEEECTTS
T ss_pred eEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh--cCCCEEEEEeCccc
Confidence 35899999432 233445555 478999999999875433332233333332 36899999999998
Q ss_pred CCCCCCCCHHHHHHHHHh----cCCCeEEEcccCCcchhhhH
Q psy17235 67 EGTTPQVTEADMENFWSR----RSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 67 ~~~~~~v~~~~~~~~a~~----~~~~~~~e~Sa~~~~~v~~~ 104 (170)
.+ ........ .. .+. .+...++..||++|.|+++.
T Consensus 230 v~-~~~~~~~i-l~-~~~~~l~lg~~~VV~iSA~~G~GvdeL 268 (772)
T 3zvr_A 230 MD-EGTDARDV-LE-NKLLPLRRGYIGVVNRSQKDIDGKKDI 268 (772)
T ss_dssp SC-TTCCSHHH-HT-TCSSCCSSCEEECCCCCCEESSSSEEH
T ss_pred CC-cchhhHHH-HH-HHhhhhhccCCceEEecccccccchhH
Confidence 76 33322211 11 111 13234556799999999886
No 209
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.00 E-value=1.2e-05 Score=68.33 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=52.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+.|.||||+..|..-....++-+||+|+|+|...----+...-|. ....+ ++|.+++.||+|...
T Consensus 102 iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~~--~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 102 VNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRMR--ATPVMTFVNKMDREA 166 (548)
T ss_dssp EEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHHT--TCCEEEEEECTTSCC
T ss_pred EEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHH-HHHHh--CCceEEEEecccchh
Confidence 478999999999998888899999999999998865555545553 33333 799999999999876
No 210
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.95 E-value=0.00011 Score=58.61 Aligned_cols=93 Identities=8% Similarity=0.071 Sum_probs=53.4
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF 81 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~ 81 (170)
.|+||+|...- .......+|.+++|+|.+..+..+.+..++. ..|.+++.||+|+.. ....+....+.+
T Consensus 151 iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~-------~~~~ivvlNK~Dl~~-~~~~s~~~~~~l 219 (337)
T 2qm8_A 151 ILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKGIF-------ELADMIAVNKADDGD-GERRASAAASEY 219 (337)
T ss_dssp EEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTTHH-------HHCSEEEEECCSTTC-CHHHHHHHHHHH
T ss_pred EEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHHHh-------ccccEEEEEchhccC-chhHHHHHHHHH
Confidence 58999996421 1234578999999999865443222211111 245677779999743 222222233344
Q ss_pred HHhc---C------CCeEEEcccCCcchhhhHH
Q psy17235 82 WSRR---S------SRRFKPQEVVEPQEVVEAE 105 (170)
Q Consensus 82 a~~~---~------~~~~~e~Sa~~~~~v~~~~ 105 (170)
.... + .+.++.+||+++.|+++..
T Consensus 220 ~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~ 252 (337)
T 2qm8_A 220 RAALHILTPPSATWTPPVVTISGLHGKGLDSLW 252 (337)
T ss_dssp HHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHH
T ss_pred HHHHHhccccccCCCCCEEEEeCCCCCCHHHHH
Confidence 3321 1 2456679999999999863
No 211
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.81 E-value=2.7e-05 Score=68.05 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=51.5
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
++|.|||||-.|..-....++-+||+|+|+|...--.-+...-|... .++ ++|.+++.||+|...
T Consensus 87 iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a-~~~--~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 87 VNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA-NKY--GVPRIVYVNKMDRQG 151 (709)
T ss_dssp EEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHH--TCCEEEEEECSSSTT
T ss_pred EEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH-HHc--CCCeEEEEccccccC
Confidence 46899999999988888889999999999999876544444444333 333 799999999999865
No 212
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.78 E-value=1.7e-05 Score=68.58 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=50.9
Q ss_pred CeEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 1 l~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
++|.|||||..|..-....++-+||+|+|+|...--.-+...-| .....+ ++|.+++.||+|...
T Consensus 69 iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~--~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 69 VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM--GIPTIFFINKIDQNG 133 (638)
T ss_dssp CCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH--TCSCEECCEECCSSS
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc--CCCeEEEEecccccc
Confidence 57899999999999888899999999999999875333333334 333333 689999999999866
No 213
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.69 E-value=2.4e-05 Score=60.42 Aligned_cols=84 Identities=10% Similarity=0.092 Sum_probs=54.7
Q ss_pred CCcccc-ccchhhhccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH
Q psy17235 7 GGMERV-ASITSSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS 83 (170)
Q Consensus 7 ~G~e~~-~~~~~~~~~~ad~iilv~D~t~~~Sf~~--~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~ 83 (170)
|||... .......+.++|+++.|+|..+|.+..+ +. | . +.|.++|.||+|+.+ ... .+....+.+
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-l-------l-~k~~iivlNK~DL~~-~~~--~~~~~~~~~ 72 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-F-------S-RKETIILLNKVDIAD-EKT--TKKWVEFFK 72 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-C-------T-TSEEEEEEECGGGSC-HHH--HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-h-------c-CCCcEEEEECccCCC-HHH--HHHHHHHHH
Confidence 666532 2344566889999999999999987653 22 2 1 789999999999865 211 112223344
Q ss_pred hcCCCeEEEcccCCcchhhhH
Q psy17235 84 RRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 84 ~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
..|.+ + .+||+++.|+.+.
T Consensus 73 ~~g~~-v-~iSa~~~~gi~~L 91 (262)
T 3cnl_A 73 KQGKR-V-ITTHKGEPRKVLL 91 (262)
T ss_dssp HTTCC-E-EECCTTSCHHHHH
T ss_pred HcCCe-E-EEECCCCcCHHHH
Confidence 45666 4 7899999998864
No 214
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.46 E-value=0.00019 Score=56.73 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=55.1
Q ss_pred cchhhhccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH---hcCCCe
Q psy17235 14 SITSSYYKFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS---RRSSRR 89 (170)
Q Consensus 14 ~~~~~~~~~ad~iilv~D~t~~~S-f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~---~~~~~~ 89 (170)
.+......++|.+++|+|..+|.+ ...+..++..... .++|.+||.||+|+.+ ... ..+....+.+ ..|.+
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~-~~~-~~~~~~~~~~~y~~~g~~- 152 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIE-DQD-TEDTIQAYAEDYRNIGYD- 152 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCC-CHH-HHHHHHHHHHHHHHHTCC-
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCc-hhh-hHHHHHHHHHHHHhCCCe-
Confidence 344556789999999999998754 4444455433222 4789999999999976 211 0011333333 44664
Q ss_pred EEEcccCCcchhhhH
Q psy17235 90 FKPQEVVEPQEVVEA 104 (170)
Q Consensus 90 ~~e~Sa~~~~~v~~~ 104 (170)
.+.+||.++.|+++.
T Consensus 153 v~~~sa~~~~g~~~L 167 (307)
T 1t9h_A 153 VYLTSSKDQDSLADI 167 (307)
T ss_dssp EEECCHHHHTTCTTT
T ss_pred EEEEecCCCCCHHHH
Confidence 556799988887753
No 215
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.04 E-value=0.0028 Score=51.06 Aligned_cols=78 Identities=12% Similarity=0.042 Sum_probs=50.8
Q ss_pred ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH---hcCCCeEEEccc
Q psy17235 20 YKFAEAAILVFSLDNAA-SFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS---RRSSRRFKPQEV 95 (170)
Q Consensus 20 ~~~ad~iilv~D~t~~~-Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~---~~~~~~~~e~Sa 95 (170)
..++|.+++|.+. +|. +...+..++..... .++|.+||.||+|+.+ .. ..+....+.. ..|.+ .+.+||
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~-~~--~~~~~~~~~~~y~~~G~~-v~~~Sa 200 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLD-DE--GMDFVNEQMDIYRNIGYR-VLMVSS 200 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCC-HH--HHHHHHHHHHHHHTTTCC-EEECBT
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCC-ch--hHHHHHHHHHHHHhCCCc-EEEEec
Confidence 5789999998775 454 44445555543322 3688899999999976 21 1111333333 45665 556899
Q ss_pred CCcchhhhH
Q psy17235 96 VEPQEVVEA 104 (170)
Q Consensus 96 ~~~~~v~~~ 104 (170)
.++.++.+.
T Consensus 201 ~~~~gl~~L 209 (358)
T 2rcn_A 201 HTQDGLKPL 209 (358)
T ss_dssp TTTBTHHHH
T ss_pred CCCcCHHHH
Confidence 999998875
No 216
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.70 E-value=0.00055 Score=55.89 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=23.0
Q ss_pred CeEEecCCcccccc-------chhhhccCCcEEEEEEeCCChhhHH
Q psy17235 1 MQLWDTGGMERVAS-------ITSSYYKFAEAAILVFSLDNAASFH 39 (170)
Q Consensus 1 l~iwDt~G~e~~~~-------~~~~~~~~ad~iilv~D~t~~~Sf~ 39 (170)
+++|||||+..+.+ .+..+++++|++++|+|+++..++.
T Consensus 88 i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~ 133 (396)
T 2ohf_A 88 LNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDIT 133 (396)
T ss_dssp EEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-------
T ss_pred cEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchh
Confidence 47999999887544 4567889999999999998766544
No 217
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0076 Score=48.80 Aligned_cols=87 Identities=9% Similarity=0.110 Sum_probs=52.6
Q ss_pred CeEEecCCccccc----cch---hhhccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCC---
Q psy17235 1 MQLWDTGGMERVA----SIT---SSYYKFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYAENAKIFLCGNKSDLEGT--- 69 (170)
Q Consensus 1 l~iwDt~G~e~~~----~~~---~~~~~~ad~iilv~D~t~~~S-f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~--- 69 (170)
+++.||||--.-. .+. -...+.+|++++|+|.++|.. ++.+...+..+.......|.+++.||.|..+-
T Consensus 121 i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~ 200 (376)
T 4a9a_A 121 IQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISIT 200 (376)
T ss_dssp EEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEE
T ss_pred EEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhh
Confidence 4789999953211 121 234578999999999998743 33333333222111156788889999997431
Q ss_pred ----CCCCCHHHHHHHHHhcCC
Q psy17235 70 ----TPQVTEADMENFWSRRSS 87 (170)
Q Consensus 70 ----~~~v~~~~~~~~a~~~~~ 87 (170)
....+.++...+...+.+
T Consensus 201 ~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 201 NTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp ESSCCSSCCHHHHHHHHHHTTC
T ss_pred cchhhhhccHHHHHHHHHHhcc
Confidence 234566777766666554
No 218
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=96.00 E-value=0.04 Score=44.27 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhhhhc
Q psy17235 109 QEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELKT 168 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 168 (170)
..+...|..++.....++..|..+|+.+|++++.+-++.+.+++++....+++++..+.+
T Consensus 306 ~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~~qi~~~k~~~~~w~~~l~~~~~ 365 (366)
T 3dyt_A 306 QNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPV 365 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345578899999999999999999999999999999999999999999999999987643
No 219
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=95.51 E-value=0.09 Score=42.59 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q psy17235 109 QEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELK 167 (170)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 167 (170)
..+...|..++.....++..|..+|+.+|++++.+-++.+.+..++..+.+.+|+..+.
T Consensus 326 ~e~~~r~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle~qi~~~~~~~~~le~~l~~f~ 384 (386)
T 4akv_A 326 DGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEKTLRMYD 384 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35678899999999999999999999999999999999999999999999999998764
No 220
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.90 E-value=0.068 Score=38.40 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=54.0
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC---CCCeEEEEeeCCCCCCCCCCCCHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA---ENAKIFLCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~---~~~pvvlvgnK~Dl~~~~~~v~~~~~ 78 (170)
-|.|||+.- .......+..+|.++++...+. .+ ..+...++.+.... ++.++.+|.|+.|... .. ..+.
T Consensus 79 viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~---~~-~~~~ 150 (206)
T 4dzz_A 79 AIVDGAGSL--SVITSAAVMVSDLVIIPVTPSP-LD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA---TM-LNVL 150 (206)
T ss_dssp EEEECCSSS--SHHHHHHHHHCSEEEEEECSCT-TT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE---EE-EHHH
T ss_pred EEEECCCCC--CHHHHHHHHHCCEEEEEecCCH-HH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc---hH-HHHH
Confidence 478999865 3344556677999999998654 44 66766666665543 5678899999999533 22 2455
Q ss_pred HHHHHhcCCCeE
Q psy17235 79 ENFWSRRSSRRF 90 (170)
Q Consensus 79 ~~~a~~~~~~~~ 90 (170)
.++.+.++.+.+
T Consensus 151 ~~~l~~~~~~vl 162 (206)
T 4dzz_A 151 KESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHTCCBC
T ss_pred HHHHHHcCCcee
Confidence 666666776533
No 221
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.07 E-value=0.63 Score=34.86 Aligned_cols=61 Identities=11% Similarity=0.003 Sum_probs=44.7
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSD 65 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~D 65 (170)
-|+|+|+.- .......+..+|.+|++... +..+...+...+..+.....+.++.+|.|+.+
T Consensus 148 viiD~pp~~--~~~~~~~l~~aD~vivv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 148 IVIDTNPSL--DVTLKNALLCSDYVIIPMTA-EKWAVESLDLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp EEEEECSSC--SHHHHHHHTTCSEEEEEEES-CTTHHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred EEEECcCCc--cHHHHHHHHHCCeEEEEeCC-ChHHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 478998754 23345556779999999986 45677777777777766656678889999994
No 222
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=91.70 E-value=1.1 Score=32.54 Aligned_cols=81 Identities=7% Similarity=-0.014 Sum_probs=53.3
Q ss_pred eEEecCCc-cccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 2 QLWDTGGM-ERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 2 ~iwDt~G~-e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
-|.|||+. .. ......+..+|.+|++... +..++..+...+..+.... +.++.+|.|+.|... . -...+..+
T Consensus 71 viiD~p~~~~~--~~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~-~--~~~~~~~~ 143 (209)
T 3cwq_A 71 IVIDTQARPED--EDLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG-NNRFRILLTIIPPYP-S--KDGDEARQ 143 (209)
T ss_dssp EEEEEECCCSS--SHHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTT-S--CHHHHHHH
T ss_pred EEEeCCCCcCc--HHHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc-CCCEEEEEEecCCcc-c--hHHHHHHH
Confidence 47899886 32 2344567789999999875 4567777777776666532 567889999998532 0 22455556
Q ss_pred HHHhcCCCe
Q psy17235 81 FWSRRSSRR 89 (170)
Q Consensus 81 ~a~~~~~~~ 89 (170)
..+++|.+.
T Consensus 144 ~l~~~g~~v 152 (209)
T 3cwq_A 144 LLTTAGLPL 152 (209)
T ss_dssp HHHHTTCCB
T ss_pred HHHHcCCch
Confidence 666677653
No 223
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.69 E-value=0.16 Score=42.61 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=37.0
Q ss_pred eEEecCCccccc-cchhh---h--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeE-EEEeeCCCCCC
Q psy17235 2 QLWDTGGMERVA-SITSS---Y--YKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~~~-~~~~~---~--~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pv-vlvgnK~Dl~~ 68 (170)
.|+||||..... .++.. . ...+|.+++|+|.+....... ....+.. .+|+ ++|.||.|...
T Consensus 187 vIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~---~~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 187 IIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD---KVDVASVIVTKLDGHA 254 (504)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH---HHCCCCEEEECTTSCC
T ss_pred EEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh---hcCceEEEEeCCcccc
Confidence 589999975321 11111 1 237899999999987544211 1222222 2675 78899999864
No 224
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.49 E-value=1.9 Score=31.47 Aligned_cols=81 Identities=14% Similarity=0.063 Sum_probs=54.9
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMEN 80 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~ 80 (170)
-|.|+|+.- .......+..+|.++++... +..++..+...++.+.... +..++-+|.|+.+... ....+ .
T Consensus 122 viiD~p~~~--~~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~---~~~~~---~ 192 (245)
T 3ea0_A 122 IIVDFGASI--DHVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS---RITSD---E 192 (245)
T ss_dssp EEEEEESSC--CTTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT---TSCHH---H
T ss_pred EEEeCCCCC--chHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC---CCCHH---H
Confidence 478998754 23445567789999999875 4778888888888777654 3455778899998644 34443 3
Q ss_pred HHHhcCCCeEE
Q psy17235 81 FWSRRSSRRFK 91 (170)
Q Consensus 81 ~a~~~~~~~~~ 91 (170)
+.+.++.+.+.
T Consensus 193 ~~~~~~~~v~~ 203 (245)
T 3ea0_A 193 IEKVIGRPISK 203 (245)
T ss_dssp HHHHHTSCEEE
T ss_pred HHHHhCCCeEE
Confidence 45556776553
No 225
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.44 E-value=2.7 Score=32.09 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=54.1
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEE-EEeeCCCCCCCCCCCCHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF-LCGNKSDLEGTTPQVTEADM 78 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvv-lvgnK~Dl~~~~~~v~~~~~ 78 (170)
-|.||++.-.... ....+..+|.+|+|.. .+..++..+...+..+.... .+++++ +|.|+.+.. ...
T Consensus 160 ViiD~p~~~~~~~-~~~~l~~aD~viiv~~-~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--------~~~ 229 (307)
T 3end_A 160 VIFDVLGDVVCGG-FAAPLQHADQAVVVTA-NDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--------DEV 229 (307)
T ss_dssp EEEEECCSSCCGG-GGGGGGTCSEEEEEEC-SSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--------HHH
T ss_pred EEEeCCCccchHH-HHHHHHHCCEEEEEec-CcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--------HHH
Confidence 4789987533221 2345678999999986 45677788777777776543 567766 899999832 356
Q ss_pred HHHHHhcCCCeEE
Q psy17235 79 ENFWSRRSSRRFK 91 (170)
Q Consensus 79 ~~~a~~~~~~~~~ 91 (170)
.++.+.++.+.+.
T Consensus 230 ~~~~~~~g~~v~~ 242 (307)
T 3end_A 230 DRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHTCCEEE
T ss_pred HHHHHHcCCCcee
Confidence 6677778876554
No 226
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.83 E-value=2 Score=33.24 Aligned_cols=88 Identities=10% Similarity=-0.059 Sum_probs=51.8
Q ss_pred eEEecCCccc--cc-cchh-----hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCC
Q psy17235 2 QLWDTGGMER--VA-SITS-----SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQ 72 (170)
Q Consensus 2 ~iwDt~G~e~--~~-~~~~-----~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~ 72 (170)
-|.||||... .. .+.. .....+|.+++|.|.+.... .......+.. ..| ..+|.||.|...
T Consensus 184 ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~---~~~i~gvVlnk~D~~~---- 253 (297)
T 1j8m_F 184 IIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ---ASKIGTIIITKMDGTA---- 253 (297)
T ss_dssp EEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH---TCTTEEEEEECGGGCT----
T ss_pred EEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh---hCCCCEEEEeCCCCCc----
Confidence 4799999765 21 1111 12447899999999864322 1122222222 356 567889999643
Q ss_pred CCHHHHHHHHHhcCCCeEEEcccCCcchhhh
Q psy17235 73 VTEADMENFWSRRSSRRFKPQEVVEPQEVVE 103 (170)
Q Consensus 73 v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~ 103 (170)
....+..++...+.|..+.. +|+++++
T Consensus 254 -~~g~~~~~~~~~~~pi~~i~---~Ge~v~d 280 (297)
T 1j8m_F 254 -KGGGALSAVAATGATIKFIG---TGEKIDE 280 (297)
T ss_dssp -THHHHHHHHHTTTCCEEEEE---CSSSTTC
T ss_pred -chHHHHHHHHHHCcCEEEEe---CCCChhh
Confidence 12345567777888765543 5666654
No 227
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=88.35 E-value=1.9 Score=32.03 Aligned_cols=81 Identities=9% Similarity=0.024 Sum_probs=47.8
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHH---Hhh-CCCCeEE-EEeeCCCCCCCCCCCCHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI---VTY-AENAKIF-LCGNKSDLEGTTPQVTEA 76 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i---~~~-~~~~pvv-lvgnK~Dl~~~~~~v~~~ 76 (170)
-|.|||+.-.. .....+..+|.+|++...+ ..++..+...++.+ ... .++++++ +|.|+.|... ....+
T Consensus 115 iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~---~~~~~ 188 (257)
T 1wcv_1 115 VLLDAPPSLSP--LTLNALAAAEGVVVPVQAE-YYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGRT---LLAQQ 188 (257)
T ss_dssp EEEECCSSCCH--HHHHHHHHCSEEEEEEESS-THHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTC---SHHHH
T ss_pred EEEeCCCCCCH--HHHHHHHHCCeEEEEecCc-hHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCCc---HHHHH
Confidence 47899876432 2334456799999999864 45555555444443 332 2577875 8999998543 22333
Q ss_pred HHHHHHHhcCCC
Q psy17235 77 DMENFWSRRSSR 88 (170)
Q Consensus 77 ~~~~~a~~~~~~ 88 (170)
....+.+.++.+
T Consensus 189 ~~~~l~~~~~~~ 200 (257)
T 1wcv_1 189 VEAQLRAHFGEK 200 (257)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHcccc
Confidence 334444445544
No 228
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.39 E-value=3.4 Score=33.95 Aligned_cols=90 Identities=11% Similarity=-0.035 Sum_probs=50.3
Q ss_pred eEEecCCcccccc-----chh-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH
Q psy17235 2 QLWDTGGMERVAS-----ITS-SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE 75 (170)
Q Consensus 2 ~iwDt~G~e~~~~-----~~~-~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~ 75 (170)
-|.||+|.-.... +.. .....+|.+++|.|.+..++-.. ....+... -.+..+|.||.|... ..
T Consensus 186 VIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~--~~i~gVIlTKlD~~~-----~g 255 (443)
T 3dm5_A 186 IIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA--TPIGSIIVTKLDGSA-----KG 255 (443)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS--CTTEEEEEECCSSCS-----SH
T ss_pred EEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh--CCCeEEEEECCCCcc-----cc
Confidence 4889999533211 111 11336899999999876543222 22233322 123457899999754 11
Q ss_pred HHHHHHHHhcCCCeEEEcccCCcchhhhH
Q psy17235 76 ADMENFWSRRSSRRFKPQEVVEPQEVVEA 104 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v~~~ 104 (170)
-.+..+....+.|..+.. +|+++++.
T Consensus 256 G~~ls~~~~~g~PI~fig---~Ge~vddL 281 (443)
T 3dm5_A 256 GGALSAVAATGAPIKFIG---TGEKIDDI 281 (443)
T ss_dssp HHHHHHHHTTCCCEEEEE---CSSSTTCE
T ss_pred cHHHHHHHHHCCCEEEEE---cCCChHHh
Confidence 234455566788764433 37777653
No 229
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=86.41 E-value=1.8 Score=32.35 Aligned_cols=86 Identities=14% Similarity=0.050 Sum_probs=50.1
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEE-EEeeCCCCCC----CCCCC-CH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNKSDLEG----TTPQV-TE 75 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvv-lvgnK~Dl~~----~~~~v-~~ 75 (170)
-|.|||+.-....+....+..+|.+|+|...+ ..+...+...+..+... +.|++ +|.|+.|... ....+ ..
T Consensus 132 ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~~~~~ 208 (262)
T 2ph1_A 132 LLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEET--NTSVLGLVENMSYFVCPNCGHKSYIFGE 208 (262)
T ss_dssp EEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHTT--TCCEEEEEETTCCEECTTTCCEECTTCC
T ss_pred EEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHhC--CCCEEEEEECCCccCCcccccccccccc
Confidence 47899875432112222233689999998755 45666776666666543 56776 8999987421 01111 12
Q ss_pred HHHHHHHHhcCCCeE
Q psy17235 76 ADMENFWSRRSSRRF 90 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~ 90 (170)
.....+.+.++.+.+
T Consensus 209 ~~~~~~~~~~g~~~~ 223 (262)
T 2ph1_A 209 GKGESLAKKYNIGFF 223 (262)
T ss_dssp CCHHHHHHHTTCSEE
T ss_pred cHHHHHHHHcCCCeE
Confidence 234556677787644
No 230
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=84.22 E-value=0.79 Score=37.71 Aligned_cols=82 Identities=10% Similarity=0.042 Sum_probs=50.3
Q ss_pred eEEecCCccc--cccch--------hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCC---------CCeEEEEee
Q psy17235 2 QLWDTGGMER--VASIT--------SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE---------NAKIFLCGN 62 (170)
Q Consensus 2 ~iwDt~G~e~--~~~~~--------~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~---------~~pvvlvgn 62 (170)
.+||..|++. +...+ ..++..+.|.++|+|.++. +++....|+..+..... +.|.++..|
T Consensus 90 ~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r 168 (469)
T 1bif_A 90 EFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNGYKTFFVESICVDPEVIAAN 168 (469)
T ss_dssp GGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHH
Confidence 4789999843 33343 6677778999999999997 67777778777665431 334444556
Q ss_pred CCCCCC---CCCCCCHHHH-HHHHHh
Q psy17235 63 KSDLEG---TTPQVTEADM-ENFWSR 84 (170)
Q Consensus 63 K~Dl~~---~~~~v~~~~~-~~~a~~ 84 (170)
+.|... +.+.++.+++ ..+++.
T Consensus 169 ~~~~~~~rp~~~~~~~e~~~~~~~~R 194 (469)
T 1bif_A 169 IVQVKLGSPDYVNRDSDEATEDFMRR 194 (469)
T ss_dssp HHHHTTTSTTTTTSCHHHHHHHHHHH
T ss_pred HHHhhhcCCcccCCCHHHHHHHHHHH
Confidence 655332 0233455555 455443
No 231
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=83.05 E-value=2.5 Score=31.07 Aligned_cols=62 Identities=16% Similarity=0.042 Sum_probs=43.3
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-------CCCeEEEEeeCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-------ENAKIFLCGNKSDL 66 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-------~~~pvvlvgnK~Dl 66 (170)
-|.|+|+.-. ......+..+|.+|++.+. +..++..+...+..+.... +..++-+|.|+.|.
T Consensus 117 viiD~p~~~~--~~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 117 IVCDSPAGIE--TGALMALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp EEEECCSSSS--HHHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred EEEcCCCCCC--HHHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 4789987533 3455667789999999874 4677777777766665432 22567789999984
No 232
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=83.03 E-value=4.5 Score=33.03 Aligned_cols=78 Identities=12% Similarity=-0.005 Sum_probs=43.2
Q ss_pred eEEecCCcccccc-----chh-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCC-e-EEEEeeCCCCCCCCCCC
Q psy17235 2 QLWDTGGMERVAS-----ITS-SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENA-K-IFLCGNKSDLEGTTPQV 73 (170)
Q Consensus 2 ~iwDt~G~e~~~~-----~~~-~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~-p-vvlvgnK~Dl~~~~~~v 73 (170)
-|.||||...... +.. .....+|.+++|.|.+.... .......+ .+.+ | ..+|.||.|... . .
T Consensus 184 vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~~~~~~i~gvVlnK~D~~~-~--~ 254 (432)
T 2v3c_C 184 LIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---KEAVGEIGSIIVTKLDGSA-K--G 254 (432)
T ss_dssp EEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---HTTSCSCEEEEEECSSSCS-T--T
T ss_pred EEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---hhcccCCeEEEEeCCCCcc-c--h
Confidence 4899999654211 110 11236899999999876542 11122222 2345 6 788999999743 1 1
Q ss_pred CHHHHHHHHHhcCCCeE
Q psy17235 74 TEADMENFWSRRSSRRF 90 (170)
Q Consensus 74 ~~~~~~~~a~~~~~~~~ 90 (170)
..+..+....+.|..
T Consensus 255 --g~~l~~~~~~~~pi~ 269 (432)
T 2v3c_C 255 --GGALSAVAETKAPIK 269 (432)
T ss_dssp --HHHHHHHHHSSCCEE
T ss_pred --HHHHHHHHHHCCCEE
Confidence 123345555666543
No 233
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=83.01 E-value=3.5 Score=31.21 Aligned_cols=80 Identities=9% Similarity=0.175 Sum_probs=48.6
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh----hCCCCeEE-EEeeCCCCCCCCCCCCHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT----YAENAKIF-LCGNKSDLEGTTPQVTEA 76 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~----~~~~~pvv-lvgnK~Dl~~~~~~v~~~ 76 (170)
-|.|||+.-... ....+..+|.+|++...+ ..++..+...+..+.. ..++++++ +|.|+.|... ....+
T Consensus 158 IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~---~~~~~ 231 (298)
T 2oze_A 158 IIIDTVPTPSVY--TNNAIVASDYVMIPLQAE-EESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS---ATIKS 231 (298)
T ss_dssp EEEEECSSCSHH--HHHHHHHCSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC---HHHHH
T ss_pred EEEECCCCccHH--HHHHHHHCCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc---HHHHH
Confidence 478998764322 233344699999998753 4566666555444433 22577855 8899998643 23344
Q ss_pred HHHHHHHhcCC
Q psy17235 77 DMENFWSRRSS 87 (170)
Q Consensus 77 ~~~~~a~~~~~ 87 (170)
...++...++.
T Consensus 232 ~~~~~~~~~~~ 242 (298)
T 2oze_A 232 NLEELYKQHKE 242 (298)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHhcc
Confidence 55666666664
No 234
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=82.96 E-value=6.7 Score=28.31 Aligned_cols=80 Identities=13% Similarity=-0.088 Sum_probs=50.0
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF 81 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~ 81 (170)
-|.|+|+.-. ......+..+|.+|+|... +..++..+...+..+.+. ...++-+|.|+.+... .. .. ...+
T Consensus 115 viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~-~~-~~---~~~~ 185 (237)
T 1g3q_A 115 ILIDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKKA-GLAILGFVLNRYGRSD-RD-IP---PEAA 185 (237)
T ss_dssp EEEECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHT-TCEEEEEEEEEETSCT-TC-CC---HHHH
T ss_pred EEEECCCCcC--HHHHHHHHHCCeEEEEecC-CcccHHHHHHHHHHHHhC-CCceEEEEEecCCccc-ch-hH---HHHH
Confidence 4789987533 3344567889999999875 456777777777666654 2234557899998654 22 22 2334
Q ss_pred HHhcCCCeE
Q psy17235 82 WSRRSSRRF 90 (170)
Q Consensus 82 a~~~~~~~~ 90 (170)
.+..+.+.+
T Consensus 186 ~~~~~~~~~ 194 (237)
T 1g3q_A 186 EDVMEVPLL 194 (237)
T ss_dssp HHHHCSCEE
T ss_pred HHHhCccce
Confidence 445666543
No 235
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=82.92 E-value=3.6 Score=29.84 Aligned_cols=60 Identities=18% Similarity=-0.001 Sum_probs=40.9
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSD 65 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~D 65 (170)
-|+|||+.-.. .....+..+|.+|++... +..++..+....+.+.... -..+.+|.|+.+
T Consensus 135 viiD~pp~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~~~-~~~~~~v~N~~~ 194 (254)
T 3kjh_A 135 VVMDMGAGIEH--LTRGTAKAVDMMIAVIEP-NLNSIKTGLNIEKLAGDLG-IKKVRYVINKVR 194 (254)
T ss_dssp EEEEECTTCTT--CCHHHHTTCSEEEEEECS-SHHHHHHHHHHHHHHHHHT-CSCEEEEEEEEC
T ss_pred EEEeCCCcccH--HHHHHHHHCCEEEEecCC-CHHHHHHHHHHHHHHHHcC-CccEEEEEeCCC
Confidence 47899875432 445567889999999975 4667777766665444432 245678899997
No 236
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=82.15 E-value=6.4 Score=29.03 Aligned_cols=80 Identities=10% Similarity=-0.042 Sum_probs=51.0
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF 81 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~ 81 (170)
-|.|+|+.-. ......+..+|.+|+|... +..+...+...+..+... ...++-+|.|+.|... .. .....+
T Consensus 114 viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~-~~----~~~~~~ 184 (263)
T 1hyq_A 114 LLLDAPAGLE--RSAVIAIAAAQELLLVVNP-EISSITDGLKTKIVAERL-GTKVLGVVVNRITTLG-IE----MAKNEI 184 (263)
T ss_dssp EEEECCSSSS--HHHHHHHHHSSEEEEEECS-SHHHHHHHHHHHHHHHHH-TCEEEEEEEEEECTTT-HH----HHHHHH
T ss_pred EEEeCCCCCC--hHHHHHHHHCCEEEEEeCC-ChhHHHHHHHHHHHHHhc-CCCeeEEEEccCCccc-cc----chHHHH
Confidence 4789987533 3334456789999999864 456777777776666655 2234558899998643 11 345556
Q ss_pred HHhcCCCeE
Q psy17235 82 WSRRSSRRF 90 (170)
Q Consensus 82 a~~~~~~~~ 90 (170)
.+..+.+.+
T Consensus 185 ~~~~~~~~~ 193 (263)
T 1hyq_A 185 EAILEAKVI 193 (263)
T ss_dssp HHHTTSCEE
T ss_pred HHHhCCCeE
Confidence 666777644
No 237
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=80.35 E-value=0.99 Score=36.53 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=25.0
Q ss_pred CeEEecCCccc-------cccchhhhccCCcEEEEEEeCCC
Q psy17235 1 MQLWDTGGMER-------VASITSSYYKFAEAAILVFSLDN 34 (170)
Q Consensus 1 l~iwDt~G~e~-------~~~~~~~~~~~ad~iilv~D~t~ 34 (170)
+.+||+||... +......+++++|+++.|+|.++
T Consensus 87 i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 87 LTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred eEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 36899999533 33344556789999999999874
No 238
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=78.40 E-value=4.2 Score=30.81 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=39.3
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHH---HH-------------H---HHHHhh--CCC-CeEEE
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QH-------------L---LEIVTY--AEN-AKIFL 59 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~---~~-------------~---~~i~~~--~~~-~pvvl 59 (170)
-|.|+|+.- .......+..+|.+|++...+. .++..+. .+ + ..+... .++ .++.+
T Consensus 107 viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v 183 (286)
T 2xj4_A 107 ILIDTPGGD--SAITRMAHGRADLVVTPMNDSF-VDFDMLGTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMDWVV 183 (286)
T ss_dssp EEEECCSSC--CHHHHHHHHTCSEEEEEEESSH-HHHTTTEEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCEEEE
T ss_pred EEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc-cHHHHHHHHHHHhhhccccchhhhhhhcchhhhhhccCCccccEEE
Confidence 478998864 3445566788999999987642 3332221 12 2 333333 456 78889
Q ss_pred EeeCCCC
Q psy17235 60 CGNKSDL 66 (170)
Q Consensus 60 vgnK~Dl 66 (170)
|.|+.|.
T Consensus 184 V~N~~~~ 190 (286)
T 2xj4_A 184 LRNRLAT 190 (286)
T ss_dssp EEECCTT
T ss_pred EEeeecC
Confidence 9999985
No 239
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=78.36 E-value=18 Score=26.63 Aligned_cols=83 Identities=13% Similarity=0.054 Sum_probs=51.9
Q ss_pred eEEecCCccccccc-hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeE-EEEeeCCCCCCCCCCCCHHH
Q psy17235 2 QLWDTGGMERVASI-TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKI-FLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 2 ~iwDt~G~e~~~~~-~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pv-vlvgnK~Dl~~~~~~v~~~~ 77 (170)
-|.||+|......+ .......+|.+|++... +..++..+...+..+.... .+.++ -+|.|+.+.. ...+.
T Consensus 119 iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~-----~~~~~ 192 (269)
T 1cp2_A 119 VFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA-----NEYEL 192 (269)
T ss_dssp EEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS-----CCHHH
T ss_pred EEEeCCchhhhhhhhhhhhHhhCCEEEEeecC-chhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc-----hhHHH
Confidence 47899875332222 12223579999998874 4677777777776666543 35664 5788998632 23455
Q ss_pred HHHHHHhcCCCeE
Q psy17235 78 MENFWSRRSSRRF 90 (170)
Q Consensus 78 ~~~~a~~~~~~~~ 90 (170)
...+.+.++.+.+
T Consensus 193 ~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 193 LDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHcCCccc
Confidence 6677777887644
No 240
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=74.08 E-value=25 Score=26.25 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=49.8
Q ss_pred eEEecCCccccccc-hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeE-EEEeeCCCCCCCCCCCCHHH
Q psy17235 2 QLWDTGGMERVASI-TSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKI-FLCGNKSDLEGTTPQVTEAD 77 (170)
Q Consensus 2 ~iwDt~G~e~~~~~-~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pv-vlvgnK~Dl~~~~~~v~~~~ 77 (170)
-|.||+|......+ .+.....+|.+|++... +..++..+...+..+.... .+.++ -+|.|+.+.. ...+.
T Consensus 122 ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~-----~~~~~ 195 (289)
T 2afh_E 122 VFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD-----REDEL 195 (289)
T ss_dssp EEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT-----THHHH
T ss_pred EEEeCCCccccchhhhhhhhhhCCEEEEEecC-CHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCch-----hHHHH
Confidence 47899875322212 12223579999998864 4567777666665555432 35664 4788988632 23445
Q ss_pred HHHHHHhcCCCeE
Q psy17235 78 MENFWSRRSSRRF 90 (170)
Q Consensus 78 ~~~~a~~~~~~~~ 90 (170)
...+.+.++.+.+
T Consensus 196 ~~~l~~~~g~~~l 208 (289)
T 2afh_E 196 IIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHTSCEE
T ss_pred HHHHHHHcCcccc
Confidence 6667777787654
No 241
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=69.74 E-value=0.27 Score=39.32 Aligned_cols=83 Identities=11% Similarity=0.007 Sum_probs=43.7
Q ss_pred CeEEecCCcccccc--------chhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCC
Q psy17235 1 MQLWDTGGMERVAS--------ITSSYY--KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTT 70 (170)
Q Consensus 1 l~iwDt~G~e~~~~--------~~~~~~--~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~ 70 (170)
+.++||||-..... ....++ +..+.++++.+....--+..+.. +..+. ..+.|++++.||.|..+ .
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~--~~~~~~~~v~~k~d~~~-~ 289 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK--GGRRSFVCYMANELTVH-R 289 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEE-E
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-EEEcc--CCCceEEEEecCCcccc-c
Confidence 46899999532211 112222 57899999988732211111100 00000 14689999999999865 2
Q ss_pred CCCCHHHHHHHHHhcCCC
Q psy17235 71 PQVTEADMENFWSRRSSR 88 (170)
Q Consensus 71 ~~v~~~~~~~~a~~~~~~ 88 (170)
... ......+.+..|..
T Consensus 290 ~~~-~~~~~~~~~~~g~~ 306 (369)
T 3ec1_A 290 TKL-EKADSLYANQLGEL 306 (369)
T ss_dssp EEG-GGHHHHHHHHBTTT
T ss_pred ccH-HHHHHHHHHhcCCc
Confidence 222 23334455556653
No 242
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=68.71 E-value=19 Score=29.44 Aligned_cols=88 Identities=9% Similarity=-0.112 Sum_probs=49.0
Q ss_pred eEEecCCccc--cc-----cchhh-hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCC
Q psy17235 2 QLWDTGGMER--VA-----SITSS-YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQV 73 (170)
Q Consensus 2 ~iwDt~G~e~--~~-----~~~~~-~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v 73 (170)
-|.||||.-. .. .+... ..-..+.+++|.|.+..+.... ....+... -.+..||.||.|...
T Consensus 183 vIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~--~~~~gVIlTKlD~~a----- 252 (433)
T 3kl4_A 183 IIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA--SPIGSVIITKMDGTA----- 252 (433)
T ss_dssp EEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH--CSSEEEEEECGGGCS-----
T ss_pred EEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc--cCCcEEEEecccccc-----
Confidence 4789999533 11 11110 1125689999999876543222 22333322 134678899999754
Q ss_pred CHHHHHHHHHhcCCCeEEEcccCCcchhh
Q psy17235 74 TEADMENFWSRRSSRRFKPQEVVEPQEVV 102 (170)
Q Consensus 74 ~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~ 102 (170)
..-.+.......+.|..+.. +|++++
T Consensus 253 ~~G~als~~~~~g~Pi~fig---~Ge~v~ 278 (433)
T 3kl4_A 253 KGGGALSAVVATGATIKFIG---TGEKID 278 (433)
T ss_dssp CHHHHHHHHHHHTCEEEEEE---CCSSSS
T ss_pred cchHHHHHHHHHCCCEEEEE---CCCChH
Confidence 22334555666788754433 377764
No 243
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=65.64 E-value=27 Score=24.70 Aligned_cols=83 Identities=11% Similarity=0.011 Sum_probs=45.4
Q ss_pred eEEecCCcccccc----chhhhccCC-cEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEE-EEeeCCCCCCCCCCCCH
Q psy17235 2 QLWDTGGMERVAS----ITSSYYKFA-EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNKSDLEGTTPQVTE 75 (170)
Q Consensus 2 ~iwDt~G~e~~~~----~~~~~~~~a-d~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvv-lvgnK~Dl~~~~~~v~~ 75 (170)
-|.|+||.-.... ......... +.+|+|... ...++..+...++.+.+ .+.+++ +|.|+.|... ....
T Consensus 112 viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~-~~~~~~~~~~~i~~l~~--~~~~i~gvvlN~~~~~~---~~~~ 185 (224)
T 1byi_A 112 VLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGV-KLGCINHAMLTAQVIQH--AGLTLAGWVANDVTPPG---KRHA 185 (224)
T ss_dssp EEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEEC-STTHHHHHHHHHHHHHH--TTCCEEEEEEECCSSCC---TTHH
T ss_pred EEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecC-CCCcHHHHHHHHHHHHH--CCCcEEEEEEeCCCCch---hhHH
Confidence 3789987542111 111112211 246777765 34666666666665543 456655 7889998532 3334
Q ss_pred HHHHHHHHhcCCCeE
Q psy17235 76 ADMENFWSRRSSRRF 90 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~ 90 (170)
+....+.+.++.+.+
T Consensus 186 ~~~~~l~~~~~~~vl 200 (224)
T 1byi_A 186 EYMTTLTRMIPAPLL 200 (224)
T ss_dssp HHHHHHHHHSSSCEE
T ss_pred HHHHHHHHHcCCCEE
Confidence 445556666777654
No 244
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=63.73 E-value=12 Score=28.15 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=39.3
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEE-EEeeCCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvv-lvgnK~Dl~~ 68 (170)
-|.|||+.-... -.......+|++|+|.... ..+...+...++.+... +.+++ +|.|+.|...
T Consensus 195 VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~-~~~~~~~~~~~~~l~~~--~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 195 VIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSE-NNNKDEVKKGKELIEAT--GAKLLGVVLNRMPKDK 258 (271)
T ss_dssp EEEECCCTTTCS-HHHHHHHHHCEEEEEEETT-SCCHHHHHHHHHHHHTT--TCEEEEEEEEEECC--
T ss_pred EEEeCCCCchHH-HHHHHHHHCCEEEEEEeCC-CCcHHHHHHHHHHHHhC--CCCEEEEEEeCCcCCC
Confidence 478998753221 1223345789999998864 35666666666555543 56766 8899998643
No 245
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=61.20 E-value=16 Score=29.04 Aligned_cols=81 Identities=12% Similarity=-0.005 Sum_probs=40.8
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHH-------HHHHHHHHHHhhCCCCe---EEEEeeCCCCCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-------VLSQHLLEIVTYAENAK---IFLCGNKSDLEGTTP 71 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~-------~~~~~~~~i~~~~~~~p---vvlvgnK~Dl~~~~~ 71 (170)
-|.|||..-. ......+..+|++|+|...+. .++. .+...+..+.....+.+ ++.+.|+.+-.
T Consensus 251 VIID~pP~~~--~~~~~al~~aD~vliv~~p~~-~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~---- 323 (403)
T 3ez9_A 251 IFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQ-VDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGK---- 323 (403)
T ss_dssp EEEEECSSCS--HHHHHHHHHCSEEEEEECSSH-HHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---C----
T ss_pred EEEECCCCcc--HHHHHHHHHCCEEEEEecCch-hhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCc----
Confidence 4789987543 334445668999999987542 2332 22233334444333333 45577887621
Q ss_pred CCCHHHHHHHHHhcCCCe
Q psy17235 72 QVTEADMENFWSRRSSRR 89 (170)
Q Consensus 72 ~v~~~~~~~~a~~~~~~~ 89 (170)
.........+.+.+|.+.
T Consensus 324 ~~~~~~~~~~~~~~g~~v 341 (403)
T 3ez9_A 324 RDHETSHSLAREVYASNI 341 (403)
T ss_dssp HHHHHHHHHHHHHHTTSE
T ss_pred hhHHHHHHHHHHHhhHhh
Confidence 122222344445567643
No 246
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=59.41 E-value=58 Score=25.03 Aligned_cols=79 Identities=14% Similarity=0.263 Sum_probs=48.2
Q ss_pred EEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEE-EEeeCCCCCCCCCCCCHHHHH
Q psy17235 3 LWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF-LCGNKSDLEGTTPQVTEADME 79 (170)
Q Consensus 3 iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvv-lvgnK~Dl~~~~~~v~~~~~~ 79 (170)
++|++|......+ ...+..||.+|++.. .+..+++.+.+.+..+.... .++++. +|.|.++.. .+..
T Consensus 168 ~iD~~~~~~~~~~-~~al~aAd~viIvt~-~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~--------~~v~ 237 (314)
T 3fwy_A 168 IFDVLGDVVCGGF-AAPLQHADQAVVVTA-NDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--------DEVD 237 (314)
T ss_dssp EEEECCSSCCGGG-GGGGGTCSEEEEEEC-SSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--------HHHH
T ss_pred eeccCCcchhhhh-HhHHhhCCeEEEEeC-CcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch--------hHHH
Confidence 5777765332222 233567999888875 34567777776666665443 345553 567876543 3456
Q ss_pred HHHHhcCCCeEE
Q psy17235 80 NFWSRRSSRRFK 91 (170)
Q Consensus 80 ~~a~~~~~~~~~ 91 (170)
+++++++.+.+.
T Consensus 238 ~~a~~~~~~~lg 249 (314)
T 3fwy_A 238 RFCKETNFRRLA 249 (314)
T ss_dssp HHHHHHTCCEEE
T ss_pred HHHHHhCCeEEE
Confidence 788888876553
No 247
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=58.33 E-value=27 Score=26.52 Aligned_cols=63 Identities=11% Similarity=-0.017 Sum_probs=39.0
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~ 68 (170)
-|+|||..-... -.......+|++|+|.... ..+...+...++.+.... .+ +-+|.|+.|...
T Consensus 205 VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~-~~~~~~~~~~~~~l~~~g--~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 205 VLIDTPPILAVT-DAAIVGRHVGTTLMVARYA-VNTLKEVETSLSRFEQNG--IPVKGVILNSIFRRA 268 (286)
T ss_dssp EEEECCCTTTCT-HHHHHTTTCSEEEEEEETT-TSBHHHHHHHHHHHHHTT--CCCCEEEEEEECCCC
T ss_pred EEEcCCCCcchH-HHHHHHHHCCeEEEEEeCC-CCcHHHHHHHHHHHHhCC--CCEEEEEEcCccccc
Confidence 478998753221 1233456799999998754 345556655666555543 33 346789998654
No 248
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=52.37 E-value=32 Score=24.99 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=43.2
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCC--CCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeE
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE--NAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRF 90 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~--~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~ 90 (170)
.++|++.+.++.....+...++..+..+++... ++|+++.|.= +++ .++...|...|
T Consensus 142 ~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~~---------~~~----~~a~~iGad~~ 200 (215)
T 3ezx_A 142 HKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGAP---------VSD----KWIEEIGADAT 200 (215)
T ss_dssp TTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESSS---------CCH----HHHHHHTCCBC
T ss_pred cCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECCC---------CCH----HHHHHhCCeEE
Confidence 478988887888888888888999999888763 7888876643 332 36777888766
No 249
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=52.19 E-value=34 Score=21.48 Aligned_cols=35 Identities=9% Similarity=0.133 Sum_probs=22.1
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEee
Q psy17235 28 LVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62 (170)
Q Consensus 28 lv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgn 62 (170)
+||++++++.+...-.+...+.+..++..+.|+.+
T Consensus 3 vv~~v~d~~~~~~al~~~~n~~~~~~~~~v~vv~~ 37 (108)
T 2pd2_A 3 VVVQIKDFDKVPQALRSVINLYNDIKDAEIEVVLH 37 (108)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHHSTTCEEEEEEC
T ss_pred EEEEeCChHHHHHHHHHHHHHHhhCCCCeEEEEEc
Confidence 45666688887766666666555545666665544
No 250
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=48.82 E-value=26 Score=28.47 Aligned_cols=77 Identities=10% Similarity=-0.039 Sum_probs=42.3
Q ss_pred eEEecCCccccc-cchh-----hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeE-EEEeeCCCCCCCCCCCC
Q psy17235 2 QLWDTGGMERVA-SITS-----SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNKSDLEGTTPQVT 74 (170)
Q Consensus 2 ~iwDt~G~e~~~-~~~~-----~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pv-vlvgnK~Dl~~~~~~v~ 74 (170)
-|.||||.-.+. .+.. .....++.+++|.|.+...... .....+.. .+|+ -+|.||.|... . ..
T Consensus 187 VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~---~l~i~gvVlnK~D~~~-~--~g 257 (433)
T 2xxa_A 187 LLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE---ALPLTGVVLTKVDGDA-R--GG 257 (433)
T ss_dssp EEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH---HSCCCCEEEECTTSSS-C--CT
T ss_pred EEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc---cCCCeEEEEecCCCCc-c--HH
Confidence 478999964432 1111 1244789999999987543321 22222222 3443 36889999753 1 11
Q ss_pred HHHHHHHHHhcCCCe
Q psy17235 75 EADMENFWSRRSSRR 89 (170)
Q Consensus 75 ~~~~~~~a~~~~~~~ 89 (170)
.+..+....+.|.
T Consensus 258 --~~l~i~~~~~~Pi 270 (433)
T 2xxa_A 258 --AALSIRHITGKPI 270 (433)
T ss_dssp --HHHHHHHHHCCCE
T ss_pred --HHHHHHHHHCCCe
Confidence 3334555667653
No 251
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=47.94 E-value=45 Score=24.97 Aligned_cols=43 Identities=9% Similarity=-0.012 Sum_probs=26.6
Q ss_pred CCcEEEEEEeCC-ChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 22 FAEAAILVFSLD-NAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 22 ~ad~iilv~D~t-~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
.+++.+++.|.+ .+-+-.. ...+..+.. .+++|+|.||.|...
T Consensus 111 Ral~~lllldep~~gL~~lD-~~~l~~L~~---~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 111 RVHCCLYFISPTGHSLRPLD-LEFMKHLSK---VVNIIPVIAKADTMT 154 (270)
T ss_dssp SCCEEEEEECCCSSSCCHHH-HHHHHHHHT---TSEEEEEETTGGGSC
T ss_pred eeeeeeEEEecCCCcCCHHH-HHHHHHHHh---cCcEEEEEeccccCC
Confidence 468889999865 2222111 223333332 389999999999654
No 252
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=46.28 E-value=69 Score=21.98 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=37.7
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEE
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFK 91 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~ 91 (170)
.++|++.+... ...+...+...++.++... +++|+++.|.-. .++. ..++..|+..++
T Consensus 68 ~~~diV~lS~~--~~~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~----------~~~~-~~l~~~G~d~v~ 126 (161)
T 2yxb_A 68 EDVDVIGVSIL--NGAHLHLMKRLMAKLRELGADDIPVVLGGTIP----------IPDL-EPLRSLGIREIF 126 (161)
T ss_dssp TTCSEEEEEES--SSCHHHHHHHHHHHHHHTTCTTSCEEEEECCC----------HHHH-HHHHHTTCCEEE
T ss_pred cCCCEEEEEee--chhhHHHHHHHHHHHHhcCCCCCEEEEeCCCc----------hhcH-HHHHHCCCcEEE
Confidence 46787766554 4466777788888887765 578888877421 1222 346778987654
No 253
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=46.20 E-value=16 Score=26.07 Aligned_cols=69 Identities=7% Similarity=0.043 Sum_probs=42.0
Q ss_pred hhhccCCcEEEEEE---eCCChhhHHHHHHHHHHHHhh--CCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCC
Q psy17235 17 SSYYKFAEAAILVF---SLDNAASFHVLSQHLLEIVTY--AENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSS 87 (170)
Q Consensus 17 ~~~~~~ad~iilv~---D~t~~~Sf~~~~~~~~~i~~~--~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~ 87 (170)
...+..|||+|++. .-+-+-.+.++-.|+...... ..+.|+.+++.-.-..+ -.......+......|+
T Consensus 62 ~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~G--g~~a~~~Lr~vl~~lg~ 135 (190)
T 3u7r_A 62 KDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIG--AALAQARLKNDLLHVGT 135 (190)
T ss_dssp HHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTT--THHHHHHHHHHHHTTTC
T ss_pred HHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhh--HHHHHHHHHHHHHHcCC
Confidence 34577899999994 444466777777787532111 16789998877554332 12233445555566665
No 254
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=43.25 E-value=30 Score=27.27 Aligned_cols=30 Identities=13% Similarity=0.021 Sum_probs=20.6
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLD 33 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t 33 (170)
-|+|||..-. ......+..+|++|++...+
T Consensus 248 ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~ 277 (398)
T 3ez2_A 248 ILVDSGPHLD--AFLKNALASANILFTPLPPA 277 (398)
T ss_dssp EEEEECSCCS--HHHHHHHHHCSEEEEEECCS
T ss_pred EEEeCCCCcc--HHHHHHHHHCCEEEEEecCc
Confidence 4789987543 23344566899999998754
No 255
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=42.59 E-value=49 Score=25.13 Aligned_cols=63 Identities=14% Similarity=0.001 Sum_probs=36.9
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEE-EEeeCCCCCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIF-LCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvv-lvgnK~Dl~~ 68 (170)
-|.|||+.-... -.......+|++|+|..... .+...+...+..+.+. +++++ +|.|+.|...
T Consensus 217 VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~-~~~~~~~~~~~~l~~~--~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 217 VIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGL-NTAKEVSLSMQRLEQA--GVNIKGAILNGVIKRA 280 (299)
T ss_dssp EEEECCCTTTCT-HHHHHGGGCSEEEEEEETTT-SCTTHHHHHHHHHHHT--TCCCCCEEEEECCCCC
T ss_pred EEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCC-ChHHHHHHHHHHHHhC--CCCeEEEEEeCCccCC
Confidence 478998753321 12233467899999987543 3444555555555543 34433 6779998653
No 256
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=42.39 E-value=59 Score=26.44 Aligned_cols=40 Identities=10% Similarity=0.044 Sum_probs=22.1
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 25 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 25 ~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
+++++.|....-+-.++ ..+..+ ..++|+|+|.||+|...
T Consensus 151 ~v~fI~d~~~~l~~~Di-eilk~L---~~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDL-VTMKKL---DSKVNIIPIIAKADAIS 190 (427)
T ss_dssp EEEEECCCC---CHHHH-HHHHHT---CSCSEEEEEESCGGGSC
T ss_pred EEEEEeCCCCCCCHHHH-HHHHHH---hhCCCEEEEEcchhccc
Confidence 35566665543332221 222222 25899999999999654
No 257
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=40.92 E-value=27 Score=22.52 Aligned_cols=68 Identities=7% Similarity=-0.032 Sum_probs=40.7
Q ss_pred hccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeE
Q psy17235 19 YYKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRF 90 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~~~Sf~--~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~ 90 (170)
.+..+|+++++..+-...-.. .+..++..+.....+.|+.++++--.. . .-.......+....|+...
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~~l~~k~~~~~~t~g~~-~---~~~~~~l~~~l~~~g~~~~ 112 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAPKLKGKKVGLFGSYGWG-S---GEWMDAWKQRTEDTGATVI 112 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGGGCSSCEEEEEEEESSC-C---SHHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhhhcCCCEEEEEEecCCC-C---chHHHHHHHHHHHCCCEEc
Confidence 467899999998764322111 255566665444467889988874321 1 2234556666777777543
No 258
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=38.56 E-value=1.5e+02 Score=23.76 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=30.6
Q ss_pred eEEecCCcccccc-----chhhhccCCcEEEEEEeCC--ChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 2 QLWDTGGMERVAS-----ITSSYYKFAEAAILVFSLD--NAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 2 ~iwDt~G~e~~~~-----~~~~~~~~ad~iilv~D~t--~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
.+||++|-..-.. +...-+...+.+++ +|.. .++... ....+.. .+.|+++|.||.|+
T Consensus 123 tv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~----la~aL~~--~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 123 VFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDID----IAKAISM--MKKEFYFVRTKVDS 187 (413)
T ss_dssp EEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHH----HHHHHHH--TTCEEEEEECCHHH
T ss_pred eehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHH----HHHHHHh--cCCCeEEEEecCcc
Confidence 5789988432111 11222334455554 7765 333222 1222222 26899999999996
No 259
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=38.19 E-value=16 Score=31.03 Aligned_cols=54 Identities=19% Similarity=0.106 Sum_probs=28.5
Q ss_pred ccchhhhccCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhCCCCeEEEEeeCCCCCC
Q psy17235 13 ASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFLCGNKSDLEG 68 (170)
Q Consensus 13 ~~~~~~~~~~ad~iilv~D~t~~~Sf-~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~ 68 (170)
..+...|+....++++++-..+.+.- ..+......+.. ...+.|+|.||.|+..
T Consensus 174 ~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~--~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 174 KTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP--EGDRTIGILTKPDLVD 228 (608)
T ss_dssp HHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS--SCCSEEEEEECGGGSS
T ss_pred HHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh--cCCceEEEecchhhcC
Confidence 34555666665555555544332211 112233333322 3578899999999754
No 260
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=37.46 E-value=59 Score=25.86 Aligned_cols=42 Identities=14% Similarity=0.043 Sum_probs=29.5
Q ss_pred CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhh
Q psy17235 53 ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVE 103 (170)
Q Consensus 53 ~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~ 103 (170)
...|.+++.||.|... .++...+. ..+.+...|+..+.|++.
T Consensus 248 ~~~p~i~v~nKid~~~------~eele~l~---~~~~~~~is~~~e~gLd~ 289 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSLS------IEELELLY---RIPNAVPISSGQDWNLDE 289 (376)
T ss_dssp EEECEEEEEECGGGSC------HHHHHHHT---TSTTEEECCTTTCTTHHH
T ss_pred hccceEEEEecccccC------HHHHHHHh---cccchhhhhhhhcccchh
Confidence 3579999999999543 34444433 345677889999888775
No 261
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=37.36 E-value=32 Score=24.54 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=40.4
Q ss_pred hccCCcEEEEEEeCCChhhHHHHHHHHHHHHh----hCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCC
Q psy17235 19 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVT----YAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSS 87 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~----~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~ 87 (170)
.+..||++|++.-.-+..---.+++|+..+.. ...+.|+.++++--...+ ........+.+....|+
T Consensus 70 ~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g--~~~a~~~Lr~il~~lg~ 140 (199)
T 4hs4_A 70 QIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIG--GARAQNHLRQSLVFLDA 140 (199)
T ss_dssp HHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSC--SHHHHHHHHHHHHHTTC
T ss_pred HHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCcc--cHHHHHHHHHHHHHcCC
Confidence 46789999999766554332344556666554 226789998887543222 11233456666666776
No 262
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=34.46 E-value=43 Score=26.20 Aligned_cols=60 Identities=15% Similarity=-0.057 Sum_probs=33.9
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCC
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKS 64 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~ 64 (170)
-|+|||..- .......+..+|.+++|... ++.+...+..++..+.......++-+|.|..
T Consensus 263 VIID~p~~~--~~~~~~~l~~aD~vivv~~~-~~~s~~~l~~~~~~l~~l~~~~~~~vv~N~~ 322 (373)
T 3fkq_A 263 IIVDLPFSL--EIEKLKLLSKAWRIIVVNDG-SQLSNYKFMRAYESVVLLEQNDDINIIRNMN 322 (373)
T ss_dssp EEEECCCCC--CHHHHHHHTTCSEEEEEECC-CHHHHHHHHHHHHHHHHHTTSTTCCCGGGEE
T ss_pred EEEeCCCCC--CHHHHHHHHHCCEEEEEecC-CchHHHHHHHHHHHHHHhcccCCcEEEehhH
Confidence 478998432 22345567889999999754 4556555555555554443333333333433
No 263
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=34.00 E-value=81 Score=23.86 Aligned_cols=81 Identities=12% Similarity=-0.004 Sum_probs=43.8
Q ss_pred eEEecCCcccccc--chhh----hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCCC
Q psy17235 2 QLWDTGGMERVAS--ITSS----YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQVT 74 (170)
Q Consensus 2 ~iwDt~G~e~~~~--~~~~----~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v~ 74 (170)
-|.||||.-.... +... ..-.++.+++|.|.+.. .+.+ .....+.. .++ .-+|.||.|... .
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~-~~~~~~~~---~~~i~givlnk~d~~~---~-- 252 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEAL-SVARAFDE---KVGVTGLVLTKLDGDA---R-- 252 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHH-HHHHHHHH---HTCCCEEEEECGGGCS---S--
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHH-HHHHHHhh---cCCCCEEEEECCCCCc---c--
Confidence 4789997643211 1110 11258888999997632 1111 11222222 233 346789999643 1
Q ss_pred HHHHHHHHHhcCCCeEEEc
Q psy17235 75 EADMENFWSRRSSRRFKPQ 93 (170)
Q Consensus 75 ~~~~~~~a~~~~~~~~~e~ 93 (170)
.-.+..++...+.|..+.+
T Consensus 253 ~g~~~~~~~~~~~pi~~i~ 271 (295)
T 1ls1_A 253 GGAALSARHVTGKPIYFAG 271 (295)
T ss_dssp CHHHHHHHHHHCCCEEEEC
T ss_pred HHHHHHHHHHHCcCEEEEe
Confidence 1245567778888876554
No 264
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=33.20 E-value=53 Score=25.14 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=30.8
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEE
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlv 60 (170)
.++|+++++--.-.+.|-+.+..++..+....+++|+++-
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilY 144 (303)
T 2wkj_A 105 YGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVY 144 (303)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 4899999986665556778888898888876555898863
No 265
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=33.10 E-value=1.1e+02 Score=23.50 Aligned_cols=59 Identities=5% Similarity=-0.032 Sum_probs=41.5
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCC
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSS 87 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~ 87 (170)
.++|+++++--.-.+.|-+.+..++..+.... ++|+++ -| .. .. ++++...++++.-++
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiil-Yn----~t-g~-l~~~~~~~La~~pnI 163 (314)
T 3d0c_A 105 SGADCVMIHQPVHPYITDAGAVEYYRNIIEAL-DAPSII-YF----KD-AH-LSDDVIKELAPLDKL 163 (314)
T ss_dssp TTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS-SSCEEE-EE----CC-TT-SCTHHHHHHTTCTTE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEE-Ee----CC-CC-cCHHHHHHHHcCCCE
Confidence 48999999866555567778888888888765 588776 45 22 45 777877777743333
No 266
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=32.65 E-value=1e+02 Score=25.79 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcc--cCCcchhhh
Q psy17235 38 FHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQE--VVEPQEVVE 103 (170)
Q Consensus 38 f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~S--a~~~~~v~~ 103 (170)
+.++...++.++++ ++|+||..|+..-.. .-..+..+++|.+.|+. +..|. ++-|++-.+
T Consensus 346 ~~NL~kHIen~~~f--GvpvVVaiN~F~tDT---~aEi~~v~~~~~~~G~~-~~~s~~wa~GG~G~~~ 407 (543)
T 3do6_A 346 FKNLRVHVENLRKF--NLPVVVALNRFSTDT---EKEIAYVVKECEKLGVR-VAVSEVFKKGSEGGVE 407 (543)
T ss_dssp HHHHHHHHHHHHHT--TCCEEEEEECCTTCC---HHHHHHHHHHHHTTTCE-EEEECHHHHGGGGSHH
T ss_pred HHHHHHHHHHHHHc--CCCeEEEEeCCCCCC---HHHHHHHHHHHHHcCCC-EEEechhhccchhHHH
Confidence 34555666666665 799999999986533 22334577889999984 44432 344444443
No 267
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=32.49 E-value=72 Score=23.42 Aligned_cols=16 Identities=31% Similarity=0.690 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhhc
Q psy17235 153 ESQVNILKKCLAELKT 168 (170)
Q Consensus 153 ~~~~~~~~~~~~~~~~ 168 (170)
+.+-.+|++|||.||.
T Consensus 188 ~~ek~~L~~cIadlk~ 203 (214)
T 2cly_A 188 QQEKETIAKCIADLKL 203 (214)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455699999999985
No 268
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=32.10 E-value=98 Score=19.62 Aligned_cols=58 Identities=7% Similarity=-0.051 Sum_probs=33.3
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEE
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKP 92 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e 92 (170)
...|.+|+=+++.+...++ .+..++...+++|+|++....|. +...-+...|+..|+.
T Consensus 66 ~~~dlvi~D~~l~~~~g~~----~~~~l~~~~~~~~ii~lt~~~~~----------~~~~~~~~~ga~~~l~ 123 (146)
T 4dad_A 66 DAFDILMIDGAALDTAELA----AIEKLSRLHPGLTCLLVTTDASS----------QTLLDAMRAGVRDVLR 123 (146)
T ss_dssp TTCSEEEEECTTCCHHHHH----HHHHHHHHCTTCEEEEEESCCCH----------HHHHHHHTTTEEEEEE
T ss_pred CCCCEEEEeCCCCCccHHH----HHHHHHHhCCCCcEEEEeCCCCH----------HHHHHHHHhCCceeEc
Confidence 4567777666655555544 34445555578999888665542 2223344567666654
No 269
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=31.72 E-value=1.7e+02 Score=22.21 Aligned_cols=68 Identities=7% Similarity=0.045 Sum_probs=46.8
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEE
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKP 92 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e 92 (170)
.++|+++++--.-.+.|-+.+..|+..+.... ++|+++- |--... ...++.+...++++.-++..+-+
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~lPiilY-n~P~~t--g~~l~~~~~~~La~~pnIvgiKd 165 (300)
T 3eb2_A 98 LGADGILAILEAYFPLKDAQIESYFRAIADAV-EIPVVIY-TNPQFQ--RSDLTLDVIARLAEHPRIRYIKD 165 (300)
T ss_dssp HTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC-SSCEEEE-ECTTTC--SSCCCHHHHHHHHTSTTEEEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEE-ECcccc--CCCCCHHHHHHHHcCCCEEEEEc
Confidence 48999999976666667788888999988775 5898763 433322 45678888888875434433333
No 270
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=31.53 E-value=77 Score=19.69 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=32.5
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEc
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQ 93 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~ 93 (170)
..|.+++=+++.+...++- +..++...+++|+|++....|... ...+...|+..|+.-
T Consensus 46 ~~dlii~d~~l~~~~g~~~----~~~l~~~~~~~~ii~~s~~~~~~~----------~~~~~~~g~~~~l~k 103 (134)
T 3f6c_A 46 KPDIVIIDVDIPGVNGIQV----LETLRKRQYSGIIIIVSAKNDHFY----------GKHCADAGANGFVSK 103 (134)
T ss_dssp CCSEEEEETTCSSSCHHHH----HHHHHHTTCCSEEEEEECC---CT----------HHHHHHTTCSEEEEG
T ss_pred CCCEEEEecCCCCCChHHH----HHHHHhcCCCCeEEEEeCCCChHH----------HHHHHHhCCCEEEeC
Confidence 4676666665555444443 444555567899988877665322 123445677767653
No 271
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=30.98 E-value=67 Score=22.85 Aligned_cols=55 Identities=5% Similarity=0.112 Sum_probs=36.5
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeE
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRF 90 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~ 90 (170)
.++|++.+-+ +...+...++..++.+++.. +++|+++.|.-.+ . .++...|...|
T Consensus 138 ~~~d~v~lS~--~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~---------~----~~~~~~gad~~ 194 (210)
T 1y80_A 138 YQPDIVGMSA--LLTTTMMNMKSTIDALIAAGLRDRVKVIVGGAPLS---------Q----DFADEIGADGY 194 (210)
T ss_dssp HCCSEEEEEC--CSGGGTHHHHHHHHHHHHTTCGGGCEEEEESTTCC---------H----HHHHHHTCSEE
T ss_pred cCCCEEEEec--cccccHHHHHHHHHHHHhcCCCCCCeEEEECCCCC---------H----HHHHHcCCeEE
Confidence 3677665544 55567778888888888765 4689888765442 1 34566787755
No 272
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=30.55 E-value=61 Score=22.88 Aligned_cols=69 Identities=7% Similarity=0.003 Sum_probs=40.9
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh----CCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy17235 18 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY----AENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSR 88 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~----~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~ 88 (170)
..+..||++|++.-.-+..---.++.|+..+... ..+.|+.++++--...+ ........+.+....|+.
T Consensus 68 ~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~g--g~~a~~~Lr~~l~~lg~~ 140 (193)
T 3svl_A 68 EQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIG--GARCQYHLRQILVFLDAM 140 (193)
T ss_dssp HHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTT--THHHHHHHHHHHHHTTCE
T ss_pred HHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcc--hHHHHHHHHHHHHHCCCE
Confidence 3467899999997765543333445555555442 26788888887543222 112334566666667763
No 273
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=30.40 E-value=39 Score=23.42 Aligned_cols=68 Identities=6% Similarity=-0.020 Sum_probs=40.4
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCe
Q psy17235 18 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRR 89 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~ 89 (170)
..+..+|++|+++-+-.-.---.++.|+..+.....+.|++++++ ..... .-.......+....|+..
T Consensus 80 ~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~~l~gK~~~~~~~-G~~~~---~~~~~~l~~~l~~~G~~~ 147 (191)
T 1t0i_A 80 RIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEWHGKPALVVSY-GGHGG---SKCNDQLQEVLHGLKMNV 147 (191)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCSTTTTTCEEEEEEE-ETTTT---HHHHHHHHHHHHHTTCEE
T ss_pred HHHHhCCEEEEEeceECCCCCHHHHHHHHHHHhhcCCCEEEEEEe-CCcch---hhHHHHHHHHHHHCCCEE
Confidence 457789999999877664333445667766543335677777755 32211 112344566667777743
No 274
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=30.32 E-value=1.2e+02 Score=20.03 Aligned_cols=65 Identities=12% Similarity=-0.017 Sum_probs=41.3
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhC-CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEE
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKP 92 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~-~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e 92 (170)
.++|++.+.... ..+...+...++.+++.. +++|+++.|.-.-. .-...+....+++.|+..|+.
T Consensus 53 ~~~d~v~lS~~~--~~~~~~~~~~i~~l~~~g~~~i~v~vGG~~~~~-----~~~~~~~~~~~~~~G~d~~~~ 118 (137)
T 1ccw_A 53 TKADAILVSSLY--GQGEIDCKGLRQKCDEAGLEGILLYVGGNIVVG-----KQHWPDVEKRFKDMGYDRVYA 118 (137)
T ss_dssp HTCSEEEEEECS--STHHHHHTTHHHHHHHTTCTTCEEEEEESCSSS-----SCCHHHHHHHHHHTTCSEECC
T ss_pred cCCCEEEEEecC--cCcHHHHHHHHHHHHhcCCCCCEEEEECCCcCc-----hHhhhhhHHHHHHCCCCEEEC
Confidence 478877766644 455666777788877765 46888777754210 112334456788899987763
No 275
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=29.86 E-value=37 Score=24.12 Aligned_cols=68 Identities=6% Similarity=-0.027 Sum_probs=39.4
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-CCCCeEEEEeeCCCCCCCCCCCCHHH-HHHHHHhcCCC
Q psy17235 18 SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-AENAKIFLCGNKSDLEGTTPQVTEAD-MENFWSRRSSR 88 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~-~~~~pvvlvgnK~Dl~~~~~~v~~~~-~~~~a~~~~~~ 88 (170)
..+..||++|++.-+-+-.---.++.|+..+... ..+.|++++++- .-.. . ....+. .+.+....|+.
T Consensus 81 ~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~t~-G~~~-~-~~~~~~~L~~il~~lg~~ 150 (191)
T 3k1y_A 81 SALSASDGLVVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAATA-GSAR-H-SLVLDYALRPLLSYMRAV 150 (191)
T ss_dssp HHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEEEE-SSST-T-TTHHHHTHHHHHHHTTCE
T ss_pred HHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEEeC-CCcc-h-hhHHHHHHHHHHHHCCCE
Confidence 3466899999998766544334455666655432 267888888873 2222 1 111122 55666667763
No 276
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=29.74 E-value=1.1e+02 Score=19.30 Aligned_cols=58 Identities=12% Similarity=0.191 Sum_probs=34.8
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEc
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQ 93 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~ 93 (170)
..|.+|+=+++.+...++- +..++...+++|+|++....|. +...-+...|+..|+.-
T Consensus 49 ~~dlvi~d~~l~~~~g~~~----~~~l~~~~~~~~ii~ls~~~~~----------~~~~~~~~~g~~~~l~k 106 (143)
T 3jte_A 49 SIDVVITDMKMPKLSGMDI----LREIKKITPHMAVIILTGHGDL----------DNAILAMKEGAFEYLRK 106 (143)
T ss_dssp TCCEEEEESCCSSSCHHHH----HHHHHHHCTTCEEEEEECTTCH----------HHHHHHHHTTCSEEEES
T ss_pred CCCEEEEeCCCCCCcHHHH----HHHHHHhCCCCeEEEEECCCCH----------HHHHHHHHhCcceeEeC
Confidence 5677776666665555543 3444455578999988765542 22334556787777653
No 277
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=29.39 E-value=1.9e+02 Score=22.11 Aligned_cols=88 Identities=11% Similarity=-0.038 Sum_probs=47.7
Q ss_pred eEEecCCccccc--cchh----------hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeE-EEEeeCCCCCC
Q psy17235 2 QLWDTGGMERVA--SITS----------SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FLCGNKSDLEG 68 (170)
Q Consensus 2 ~iwDt~G~e~~~--~~~~----------~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pv-vlvgnK~Dl~~ 68 (170)
-|.||||.-... .+.. ..-..+|.+++|.|.+.. .+.+. .+....+..++ =+|.||.|...
T Consensus 195 VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~----~~~~~~~~~~i~GvVltk~d~~~ 268 (320)
T 1zu4_A 195 LLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVI----QAEEFSKVADVSGIILTKMDSTS 268 (320)
T ss_dssp EEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHH----HHHHHTTTSCCCEEEEECGGGCS
T ss_pred EEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHH----HHHHHhhcCCCcEEEEeCCCCCC
Confidence 478999965431 1110 011347899999987732 22222 22223333443 36789999643
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhh
Q psy17235 69 TTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVE 103 (170)
Q Consensus 69 ~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~ 103 (170)
.. -.+..+....+.|..+.. .|+++++
T Consensus 269 ---~~--g~~~~~~~~~~~Pi~~i~---~Ge~~~d 295 (320)
T 1zu4_A 269 ---KG--GIGLAIKELLNIPIKMIG---VGEKVDD 295 (320)
T ss_dssp ---CT--THHHHHHHHHCCCEEEEE---CSSSTTC
T ss_pred ---ch--hHHHHHHHHHCcCEEEEe---CCCCccc
Confidence 11 245567777888754432 4555543
No 278
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=28.77 E-value=1.1e+02 Score=19.65 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=24.4
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSD 65 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~D 65 (170)
..|.+|+=+++.+...++-+ ..++...+++|+|++....+
T Consensus 58 ~~dlvi~D~~l~~~~g~~~~----~~l~~~~~~~~ii~~s~~~~ 97 (153)
T 3hv2_A 58 EVDLVISAAHLPQMDGPTLL----ARIHQQYPSTTRILLTGDPD 97 (153)
T ss_dssp CCSEEEEESCCSSSCHHHHH----HHHHHHCTTSEEEEECCCCC
T ss_pred CCCEEEEeCCCCcCcHHHHH----HHHHhHCCCCeEEEEECCCC
Confidence 46777766666655555443 34444557899988765443
No 279
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=28.68 E-value=51 Score=22.84 Aligned_cols=47 Identities=2% Similarity=-0.045 Sum_probs=32.9
Q ss_pred hccCCcEEEEEEeCCChhhHHHHHHHHHHHHh----hCCCCeEEEEeeCCC
Q psy17235 19 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVT----YAENAKIFLCGNKSD 65 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~----~~~~~pvvlvgnK~D 65 (170)
.+..+|++|+.+-+-.-.-...+..|+..+.. ...+.|+.++++--.
T Consensus 49 ~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g~ 99 (188)
T 2ark_A 49 DVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGG 99 (188)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESS
T ss_pred HHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECCC
Confidence 45679999999887655444566778877654 225778888887543
No 280
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=28.61 E-value=80 Score=26.57 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEcccCCcchhhh
Q psy17235 38 FHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVE 103 (170)
Q Consensus 38 f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~ 103 (170)
+.++...++.+.++ ++|+||..|+..-.. .-..+..+++|.+.|+. +..|=++-|+|-.+
T Consensus 360 ~~NL~kHien~~~f--GvpvVVaiN~F~tDT---~aEi~~v~~~~~~~G~~-~~~~wa~GG~G~~~ 419 (557)
T 3pzx_A 360 FANLEKHIENIGKF--GVPAVVAINAFPTDT---EAELNLLYELCAKAGAE-VALSWAKGGEGGLE 419 (557)
T ss_dssp HHHHHHHHHHHHTT--TCCEEEEEECCTTCC---HHHHHHHHHHCCSSEEE-EECHHHHGGGGGHH
T ss_pred HHHHHHHHHHHHHc--CCCeEEEEeCCCCCC---HHHHHHHHHHHHHcCCC-EEEEecccchhHHH
Confidence 33455566666665 799999999986533 22223466777777773 44444555555544
No 281
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=28.53 E-value=49 Score=25.62 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=33.8
Q ss_pred hhccCCcEEEEEEeCCCh------h----hHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 18 SYYKFAEAAILVFSLDNA------A----SFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~------~----Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
..+.++|.+|++...... + ...-++...+.+.+++|+..+++++|=+|.
T Consensus 69 ~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~ 127 (321)
T 3p7m_A 69 KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDI 127 (321)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHH
T ss_pred HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHH
Confidence 457899999998755422 1 112234566777788889889999998775
No 282
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=28.53 E-value=58 Score=24.78 Aligned_cols=60 Identities=10% Similarity=-0.036 Sum_probs=41.5
Q ss_pred cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhCC--CCeEEEEeeCCCCCCCCCCCCHHHHHHHHH
Q psy17235 21 KFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAE--NAKIFLCGNKSDLEGTTPQVTEADMENFWS 83 (170)
Q Consensus 21 ~~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~~--~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~ 83 (170)
.++|+++++--.-.+ .|-+.+..|+..+....| ++|+++- |--.. . ...++.+...++++
T Consensus 97 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilY-n~P~~-t-g~~l~~~~~~~La~ 159 (294)
T 3b4u_A 97 AGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVY-NIPSV-T-MVTLSVELVGRLKA 159 (294)
T ss_dssp TTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEE-ECHHH-H-SCCCCHHHHHHHHH
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEE-ECcch-h-CcCCCHHHHHHHHH
Confidence 489999998655555 577888889999888765 7998863 31111 1 23567788888883
No 283
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=28.43 E-value=1e+02 Score=19.06 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=23.0
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235 23 AEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSD 65 (170)
Q Consensus 23 ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~D 65 (170)
.|.+|+=+++.+...++ .+..+++..+++|+|++....+
T Consensus 47 ~dlvi~D~~l~~~~g~~----~~~~l~~~~~~~~ii~~s~~~~ 85 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIE----VIRHLAEHKSPASLILISGYDS 85 (135)
T ss_dssp TEEEEEECCTTTTHHHH----HHHHHHHTTCCCEEEEEESSCH
T ss_pred CCEEEEeCCCCCCCHHH----HHHHHHhCCCCCCEEEEEeccc
Confidence 56655555554544443 3445555557899988765443
No 284
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=28.38 E-value=28 Score=24.33 Aligned_cols=67 Identities=12% Similarity=-0.024 Sum_probs=40.2
Q ss_pred hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh----CCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCC
Q psy17235 19 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY----AENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSS 87 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~----~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~ 87 (170)
.+..+|++|+++-+-.-.---.++.|+..+... ..+.|++++++--.-.+ . .......+.+....|+
T Consensus 69 ~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg~~g-~-~~~~~~l~~~l~~~g~ 139 (193)
T 1rtt_A 69 QIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGRFG-T-ARAQYHLRQTLVFLDV 139 (193)
T ss_dssp HHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSSTTT-T-HHHHHHHHHHHHHHTC
T ss_pred HHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCCCCc-c-HHHHHHHHHHHHHcCC
Confidence 466899999987554433333456777776542 35778888887643222 1 1223455566666665
No 285
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=28.33 E-value=65 Score=19.90 Aligned_cols=20 Identities=5% Similarity=0.081 Sum_probs=13.7
Q ss_pred EEEEEEeCCChhhHHHHHHH
Q psy17235 25 AAILVFSLDNAASFHVLSQH 44 (170)
Q Consensus 25 ~iilv~D~t~~~Sf~~~~~~ 44 (170)
-++++||++++.....+.+.
T Consensus 5 ~~lV~YDI~~~kr~~kv~k~ 24 (90)
T 1zpw_X 5 LYAVAYDIPDDTRRVKLANL 24 (90)
T ss_dssp EEEEEEECCCHHHHHHHHHH
T ss_pred EEEEEEeCCChHHHHHHHHH
Confidence 48999999987555444333
No 286
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=28.12 E-value=1.9e+02 Score=22.53 Aligned_cols=69 Identities=10% Similarity=0.017 Sum_probs=44.9
Q ss_pred cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHH-HHhcCCCeEEEc
Q psy17235 21 KFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENF-WSRRSSRRFKPQ 93 (170)
Q Consensus 21 ~~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~-a~~~~~~~~~e~ 93 (170)
.++|+++++--.-.+ .+-+.+..++..+.....++|+++- |-- . . ...++.+...++ ++.-++..+-++
T Consensus 117 ~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilY-n~P-~-t-g~~l~~e~~~~L~a~~pnIvGiKds 187 (344)
T 2hmc_A 117 VGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIY-NSP-Y-Y-GFATRADLFFALRAEHKNLVGFKEF 187 (344)
T ss_dssp HTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEE-EBG-G-G-TBCCCHHHHHHHHHHCTTEEEEEEC
T ss_pred cCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEE-ecC-c-c-CCCcCHHHHHHHHhcCCCEEEEEcC
Confidence 489999998665555 6778888899998872347898753 433 2 2 356777887777 643344333333
No 287
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=27.62 E-value=59 Score=22.13 Aligned_cols=71 Identities=6% Similarity=-0.111 Sum_probs=39.2
Q ss_pred hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh------------CCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcC
Q psy17235 19 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY------------AENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRS 86 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~------------~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~ 86 (170)
.+..+|++|+++-+-.-.---.++.|+..+... ..+.|++++++--........-.......+....|
T Consensus 68 ~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G 147 (184)
T 1rli_A 68 RILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMG 147 (184)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcC
Confidence 467999999998876644334456676665321 24567777777322100000011234556666677
Q ss_pred CCe
Q psy17235 87 SRR 89 (170)
Q Consensus 87 ~~~ 89 (170)
+..
T Consensus 148 ~~~ 150 (184)
T 1rli_A 148 MSF 150 (184)
T ss_dssp CEE
T ss_pred Ccc
Confidence 743
No 288
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=27.31 E-value=1.5e+02 Score=20.24 Aligned_cols=71 Identities=11% Similarity=-0.070 Sum_probs=40.8
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-----CCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy17235 17 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-----AENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSR 88 (170)
Q Consensus 17 ~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~-----~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~ 88 (170)
...+..+|++|+++-+-.-.--..++.|+..+... ..+.|+.++++--.... ...-.......+....|+.
T Consensus 66 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~-~~~~~~~~l~~~l~~~g~~ 141 (200)
T 2a5l_A 66 LEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHG-GQETTQLSMLLPLLHHGML 141 (200)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSC-CHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCC-CHHHHHHHHHHHHHHCCCE
Confidence 34567899999998776543334455666655432 25678888777543322 1111234455566666653
No 289
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=27.31 E-value=28 Score=24.51 Aligned_cols=68 Identities=9% Similarity=0.019 Sum_probs=39.6
Q ss_pred hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-CCCCeEEEEeeCCCCCCCCCCCCHH-HHHHHHHhcCCCe
Q psy17235 19 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-AENAKIFLCGNKSDLEGTTPQVTEA-DMENFWSRRSSRR 89 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~-~~~~pvvlvgnK~Dl~~~~~~v~~~-~~~~~a~~~~~~~ 89 (170)
.+..+|++|++.-+-+-.--..++.|+..+... ..+.|++++++ ..-.. . ....+ ..+.+....|+..
T Consensus 66 ~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t-gg~~~-~-~~a~~~~l~~~l~~~g~~~ 135 (197)
T 2vzf_A 66 ATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLAT-GGSPA-H-VLALDYGLRPVLHSMGVRH 135 (197)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE-ESSGG-G-GGHHHHTHHHHHHTTTCSE
T ss_pred HHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCEEEEEEE-CCCcc-h-hhHHHHHHHHHHHHcCCEe
Confidence 466899999998776543333445565554322 25788988888 43322 1 11122 4566777777643
No 290
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=27.16 E-value=89 Score=20.12 Aligned_cols=40 Identities=8% Similarity=0.024 Sum_probs=23.6
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSD 65 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~D 65 (170)
..|++|+=+++.+...++ .+..+....+.+|+|++....|
T Consensus 51 ~~dlvi~d~~l~~~~g~~----~~~~l~~~~~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 51 SVQLVISDMRMPEMGGEV----FLEQVAKSYPDIERVVISGYAD 90 (154)
T ss_dssp CCSEEEEESSCSSSCHHH----HHHHHHHHCTTSEEEEEECGGG
T ss_pred CCCEEEEecCCCCCCHHH----HHHHHHHhCCCCcEEEEecCCC
Confidence 357666655555544443 3344444557899998866543
No 291
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=27.12 E-value=50 Score=25.26 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=33.9
Q ss_pred hhhccCCcEEEEEEeCCChh---hH-------HHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 17 SSYYKFAEAAILVFSLDNAA---SF-------HVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 17 ~~~~~~ad~iilv~D~t~~~---Sf-------~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
...+.++|.+|++....... .. .-++...+.+.+++++.-++++.|=+|.
T Consensus 64 ~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~ 123 (294)
T 1oju_A 64 YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDV 123 (294)
T ss_dssp GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHH
T ss_pred HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchH
Confidence 34578999999987654321 11 2223556677777789999999998774
No 292
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=26.53 E-value=78 Score=19.68 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=12.0
Q ss_pred EEEEEEeCCChhhHHHH
Q psy17235 25 AAILVFSLDNAASFHVL 41 (170)
Q Consensus 25 ~iilv~D~t~~~Sf~~~ 41 (170)
-++++||+++...-..+
T Consensus 5 ~vlV~YDI~~~krr~kv 21 (91)
T 3exc_X 5 KLLVVYDVSDDSKRNKL 21 (91)
T ss_dssp EEEEEEECCSHHHHHHH
T ss_pred EEEEEEeCCCchHHHHH
Confidence 47999999987544333
No 293
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=26.51 E-value=74 Score=23.62 Aligned_cols=42 Identities=2% Similarity=-0.186 Sum_probs=28.7
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCC
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKS 64 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~ 64 (170)
.++|++.+-+ ....+...++..++.+++..+++|+++.|.-.
T Consensus 173 ~~~d~V~lS~--l~~~~~~~~~~~i~~l~~~~~~~~v~vGG~~~ 214 (258)
T 2i2x_B 173 EKPIMLTGTA--LMTTTMYAFKEVNDMLLENGIKIPFACGGGAV 214 (258)
T ss_dssp HCCSEEEEEC--CCTTTTTHHHHHHHHHHTTTCCCCEEEESTTC
T ss_pred cCCCEEEEEe--eccCCHHHHHHHHHHHHhcCCCCcEEEECccC
Confidence 3667655544 44456667778888888776678988877544
No 294
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=26.14 E-value=73 Score=20.57 Aligned_cols=65 Identities=17% Similarity=0.016 Sum_probs=38.5
Q ss_pred hccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCC
Q psy17235 19 YYKFAEAAILVFSLDNAASFH--VLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSS 87 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~~~Sf~--~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~ 87 (170)
.+..+|+++++..+-...-+. .+..|+..+.....+.++.++|+--.. . .-......+..+..|+
T Consensus 42 ~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~l~~k~~~~f~t~g~~-~---~~a~~~l~~~l~~~G~ 108 (138)
T 5nul_A 42 ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTKISGKKVALFGSYGWG-D---GKWMRDFEERMNGYGC 108 (138)
T ss_dssp HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGGCTTCEEEEEEEESSS-C---SHHHHHHHHHHHHTTC
T ss_pred HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhhcCCCEEEEEEecCCC-C---ChHHHHHHHHHHHCCC
Confidence 467899999998765422111 344566555443467888888874321 1 2234556666676676
No 295
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=25.91 E-value=25 Score=24.19 Aligned_cols=68 Identities=12% Similarity=-0.011 Sum_probs=41.1
Q ss_pred hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-CCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy17235 19 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-AENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSR 88 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~-~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~ 88 (170)
.+..+|++|++.-+-+-.---.++.|+..+... ..+.|+.++++--.-.+ ..-.....+......|+.
T Consensus 60 ~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~~~~~gK~~~~~~~sgg~~g--~~~a~~~l~~~l~~~g~~ 128 (174)
T 3gfs_A 60 RVTKADAIVLLSPEYHSGMSGALKNALDFLSSEQFKYKPVALLAVAGGGDG--GINALNNMRTVMRGVYAN 128 (174)
T ss_dssp HHHHCSSEEEEEECSSSSCCHHHHHHHHTCCHHHHTTCEEEEEEECCSTTC--SHHHHHHHHHHHHHTTCE
T ss_pred HHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCHhhhCCCcEEEEEECCCChh--HHHHHHHHHHHHHHcCCE
Confidence 467899999998776544444455555543221 25788888886543221 112345667777777874
No 296
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=25.59 E-value=1.2e+02 Score=18.58 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=24.1
Q ss_pred CCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 22 FAEAAILVFSLDN-AASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 22 ~ad~iilv~D~t~-~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
..|.+|+=+++.+ ...++- +..++...+++|+|++....+.
T Consensus 50 ~~dlvi~d~~l~~~~~g~~~----~~~l~~~~~~~~ii~~s~~~~~ 91 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGWQV----ARVAREIDPNMPIVYISGHAAL 91 (132)
T ss_dssp CCCEEEEESCCSSSSCHHHH----HHHHHHHCTTCCEEEEESSCCT
T ss_pred CCCEEEEeeeCCCCCCHHHH----HHHHHhcCCCCCEEEEeCCccH
Confidence 4676666555544 344433 3444444568999988776653
No 297
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=25.40 E-value=1e+02 Score=23.50 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=45.3
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHh-cCCCeEEEc
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSR-RSSRRFKPQ 93 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~-~~~~~~~e~ 93 (170)
.++|+++++--.-.+.|-+.+..|+..+.+.. ++|+++- |--.. . ...++.+...++++. -++..+-++
T Consensus 102 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilY-n~P~~-t-g~~l~~~~~~~La~~~pnivgiKds 171 (301)
T 3m5v_A 102 HGADGILSVAPYYNKPTQQGLYEHYKAIAQSV-DIPVLLY-NVPGR-T-GCEISTDTIIKLFRDCENIYGVKEA 171 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-SSCEEEE-ECHHH-H-SCCCCHHHHHHHHHHCTTEEEEEEC
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEE-eCchh-h-CcCCCHHHHHHHHhcCCCEEEEEeC
Confidence 48999999966555567778888999888775 7998864 21111 1 245677778888865 454434333
No 298
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=25.31 E-value=1e+02 Score=23.66 Aligned_cols=59 Identities=19% Similarity=0.128 Sum_probs=39.0
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS 83 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~ 83 (170)
.++|+++++--.-.+.|-+.+..|+..+.... ++|+++- |--.. . ...++.+...++++
T Consensus 117 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilY-n~P~~-t-g~~l~~~~~~~La~ 175 (314)
T 3qze_A 117 GGADACLLVTPYYNKPTQEGMYQHFRHIAEAV-AIPQILY-NVPGR-T-SCDMLPETVERLSK 175 (314)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHS-CSCEEEE-ECHHH-H-SCCCCHHHHHHHHT
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEE-eCccc-c-CCCCCHHHHHHHhc
Confidence 48999999965555566678888999988775 7998874 21111 1 23455666666664
No 299
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=25.28 E-value=1e+02 Score=23.25 Aligned_cols=59 Identities=20% Similarity=0.134 Sum_probs=39.8
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS 83 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~ 83 (170)
.++|+++++--.-.+.|-+.+..|+..+.... ++|+++- |--... ...++.+...++++
T Consensus 95 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~-~lPiilY-n~P~~t--g~~l~~~~~~~La~ 153 (291)
T 3tak_A 95 LGADAALLVTPYYNKPTQEGLYQHYKAIAEAV-ELPLILY-NVPGRT--GVDLSNDTAVRLAE 153 (291)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-CSCEEEE-ECHHHH--SCCCCHHHHHHHTT
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEE-eccccc--CCCCCHHHHHHHHc
Confidence 48999999865555556677888999888775 7998864 221111 23566677777774
No 300
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=24.99 E-value=1e+02 Score=24.02 Aligned_cols=40 Identities=3% Similarity=-0.062 Sum_probs=29.6
Q ss_pred CCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhCCCCeEEEEe
Q psy17235 22 FAEAAILVFSLDNAA----------SFHVLSQHLLEIVTYAENAKIFLCG 61 (170)
Q Consensus 22 ~ad~iilv~D~t~~~----------Sf~~~~~~~~~i~~~~~~~pvvlvg 61 (170)
+...++++|++=+++ +.+.-+.|+..+.....+.|+++|.
T Consensus 89 g~~pvlVvY~lP~RDC~a~ssgG~~~~~~Yk~~Id~ia~~i~~~~~vvIl 138 (315)
T 1uoz_A 89 GAMPVLTLYGIPHRDCGSYASGGFATGTDYRGWIDAVASGLGSSPATIIV 138 (315)
T ss_dssp TCBCEEEECCCTTBGGGSTTCBCCSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCcEEEEeCCCCCCchhhccCCCCCHHHHHHHHHHHHHHhCCCceEEEE
Confidence 445678899986654 5767778999988877777877664
No 301
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=24.93 E-value=1.2e+02 Score=18.47 Aligned_cols=41 Identities=7% Similarity=0.110 Sum_probs=25.2
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhh--CCCCeEEEEeeCCCC
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFLCGNKSDL 66 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~--~~~~pvvlvgnK~Dl 66 (170)
..|.+|+=+++.+...++ .+..++.. .+++|+|++....+.
T Consensus 47 ~~dlii~D~~l~~~~g~~----~~~~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 47 GYDAVFIDLNLPDTSGLA----LVKQLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp CCSEEEEESBCSSSBHHH----HHHHHHHSCCSSCCEEEEEECC-CT
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhhhccCCCCEEEEECCcch
Confidence 467777766666655554 34445554 478898888766653
No 302
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=24.78 E-value=79 Score=25.58 Aligned_cols=81 Identities=11% Similarity=-0.026 Sum_probs=43.4
Q ss_pred eEEecCCcccccc--chh----hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCe-EEEEeeCCCCCCCCCCCC
Q psy17235 2 QLWDTGGMERVAS--ITS----SYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK-IFLCGNKSDLEGTTPQVT 74 (170)
Q Consensus 2 ~iwDt~G~e~~~~--~~~----~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~p-vvlvgnK~Dl~~~~~~v~ 74 (170)
-|.||||.-.... +.. ...-.+|.+++|.|.+.... +-.....+.. .++ .-+|.||.|... ..
T Consensus 184 VIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~---~l~i~GVIlTKlD~~~---~~- 253 (425)
T 2ffh_A 184 ILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDE---KVGVTGLVLTKLDGDA---RG- 253 (425)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHH---HTCCCEEEEESGGGCS---SC-
T ss_pred EEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHh---cCCceEEEEeCcCCcc---cH-
Confidence 4889999644321 111 11226889999999764322 2222222322 233 346789998643 11
Q ss_pred HHHHHHHHHhcCCCeEEEc
Q psy17235 75 EADMENFWSRRSSRRFKPQ 93 (170)
Q Consensus 75 ~~~~~~~a~~~~~~~~~e~ 93 (170)
..+..++...|.|..+..
T Consensus 254 -g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 254 -GAALSARHVTGKPIYFAG 271 (425)
T ss_dssp -HHHHHHHHHHCCCEEEEE
T ss_pred -HHHHHHHHHHCCCEEEEe
Confidence 234456667788755443
No 303
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=24.78 E-value=89 Score=19.54 Aligned_cols=56 Identities=9% Similarity=-0.029 Sum_probs=31.2
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEE
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFK 91 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~ 91 (170)
..|.+|+=+++.+...++ ++..++...+.+|+|++....+ .+...-+...|+..|+
T Consensus 51 ~~dlvi~d~~l~~~~g~~----~~~~l~~~~~~~~ii~~s~~~~----------~~~~~~~~~~g~~~~l 106 (137)
T 3hdg_A 51 APDVIITDIRMPKLGGLE----MLDRIKAGGAKPYVIVISAFSE----------MKYFIKAIELGVHLFL 106 (137)
T ss_dssp CCSEEEECSSCSSSCHHH----HHHHHHHTTCCCEEEECCCCCC----------HHHHHHHHHHCCSEEC
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhcCCCCcEEEEecCcC----------hHHHHHHHhCCcceeE
Confidence 467666555555544443 3444555557888888755443 1223334566776665
No 304
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=24.45 E-value=1.1e+02 Score=23.16 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=39.7
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHH
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFW 82 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a 82 (170)
.++|+++++--.-.+.|-+.+..|+..+.+.. ++|+++- |--.. . ...++.+...+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilY-n~P~~-t-g~~l~~~~~~~La 151 (294)
T 2ehh_A 94 VGADGALVVVPYYNKPTQRGLYEHFKTVAQEV-DIPIIIY-NIPSR-T-CVEISVDTMFKLA 151 (294)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-CSCEEEE-ECHHH-H-SCCCCHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEE-eCCcc-c-CcCCCHHHHHHHH
Confidence 48999999866655667788888998888765 7898763 31111 1 2346667777777
No 305
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=24.37 E-value=1.1e+02 Score=23.16 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=39.4
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS 83 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~ 83 (170)
.++|+++++--.-.+.|-+.+..++..+.... ++|+++- |--.. . ...++.+...++++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~-~lPiilY-n~P~~-t-g~~l~~~~~~~La~ 152 (292)
T 2vc6_A 94 AGADGVLIVSPYYNKPTQEGIYQHFKAIDAAS-TIPIIVY-NIPGR-S-AIEIHVETLARIFE 152 (292)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-SSCEEEE-ECHHH-H-SCCCCHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEE-eCccc-c-CcCCCHHHHHHHHh
Confidence 48999999876666667788888888888765 6898863 21110 1 23455666666665
No 306
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=24.32 E-value=1.1e+02 Score=23.11 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=40.4
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS 83 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~ 83 (170)
.++|+++++--.-.+.|-+.+..++..+.... ++|+++- |--.. . ...++.+...++++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~-~lPiilY-n~P~~-t-g~~l~~~~~~~La~ 152 (289)
T 2yxg_A 94 VGADAVLSITPYYNKPTQEGLRKHFGKVAESI-NLPIVLY-NVPSR-T-AVNLEPKTVKLLAE 152 (289)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-SSCEEEE-ECHHH-H-SCCCCHHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEE-eCccc-c-CcCCCHHHHHHHHH
Confidence 48999999866655667788888998888765 6898763 31111 1 23466777777773
No 307
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=24.15 E-value=1.1e+02 Score=23.17 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=37.5
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHH
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFW 82 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a 82 (170)
.++|+++++--.-.+.|-+.+..|+..+.+.. ++|+++- |--.. . ...++.+...+++
T Consensus 101 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~lPiilY-n~P~~-t-g~~l~~~~~~~La 158 (297)
T 3flu_A 101 AGADYTLSVVPYYNKPSQEGIYQHFKTIAEAT-SIPMIIY-NVPGR-T-VVSMTNDTILRLA 158 (297)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-CSCEEEE-ECHHH-H-SSCCCHHHHHHHT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEE-ECCch-h-ccCCCHHHHHHHH
Confidence 48999999865555556677888888888775 7898874 21100 0 2344555555565
No 308
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=24.14 E-value=1.1e+02 Score=23.33 Aligned_cols=59 Identities=19% Similarity=0.138 Sum_probs=38.4
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS 83 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~ 83 (170)
.++|+++++--.-.+.|-+.+..++..+.... ++|+++- |--.. . ...++.+...++++
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilY-n~P~~-t-g~~l~~~~~~~La~ 164 (301)
T 1xky_A 106 VGVDAVMLVAPYYNKPSQEGMYQHFKAIAEST-PLPVMLY-NVPGR-S-IVQISVDTVVRLSE 164 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHTC-SSCEEEE-ECHHH-H-SSCCCHHHHHHHHT
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEE-eCccc-c-CCCCCHHHHHHHHc
Confidence 48999999976666667788888888888764 7898763 31110 1 22345555555653
No 309
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=24.09 E-value=1.2e+02 Score=23.04 Aligned_cols=39 Identities=8% Similarity=-0.084 Sum_probs=30.1
Q ss_pred cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhCCCCeEEEE
Q psy17235 21 KFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLC 60 (170)
Q Consensus 21 ~~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~~~~pvvlv 60 (170)
.++|+++++--.-.+ .|-+.+..|+..+.... ++|+++-
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~-~lPiilY 129 (293)
T 1w3i_A 90 FDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVS-PHPVYLY 129 (293)
T ss_dssp SCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHC-SSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhC-CCCEEEE
Confidence 489999998666566 67788888998888765 6887763
No 310
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=24.04 E-value=98 Score=23.64 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=38.6
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS 83 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~ 83 (170)
.++|+++++--.-.+.|-+.+..|+..+.+.. ++|+++-=+ --. . ...++.+...++++
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~-P~~-t-g~~l~~~~~~~La~ 167 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT-ELPMLLYDI-PGR-S-AVPIEPDTIRALAS 167 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC-SSCEEEEEC-HHH-H-SSCCCHHHHHHHHT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEEeC-ccc-c-CCCCCHHHHHHHhc
Confidence 48999999865555567778888888888775 789887421 000 0 23455566666663
No 311
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=23.96 E-value=1.1e+02 Score=23.53 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=41.2
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhc
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRR 85 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~ 85 (170)
.++|+++++--.-.+.|-+.+..|+..+.... ++|+++- |--.. . ...++++...++++++
T Consensus 116 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~lPiilY-n~P~~-t-g~~l~~~~~~~La~~~ 176 (315)
T 3si9_A 116 AGADAVLVVTPYYNRPNQRGLYTHFSSIAKAI-SIPIIIY-NIPSR-S-VIDMAVETMRDLCRDF 176 (315)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-SSCEEEE-ECHHH-H-SCCCCHHHHHHHHHHC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHcC-CCCEEEE-eCchh-h-CCCCCHHHHHHHHhhC
Confidence 48999999865555566677888999888775 7998874 21111 1 2356677777787633
No 312
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=23.79 E-value=59 Score=25.12 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=31.8
Q ss_pred hhccCCcEEEEEEeCCChh---h-------HHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 18 SYYKFAEAAILVFSLDNAA---S-------FHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~~---S-------f~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
..+.++|+++++....... . ..-++...+.+.+++|+.-+++++|=.|.
T Consensus 65 ~a~~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~ 123 (314)
T 3nep_X 65 GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDV 123 (314)
T ss_dssp GGGTTCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHH
T ss_pred HHhCCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhH
Confidence 4578999999987654321 1 12223555667777788889999998775
No 313
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=23.74 E-value=96 Score=23.49 Aligned_cols=59 Identities=17% Similarity=0.132 Sum_probs=38.5
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHH
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS 83 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~ 83 (170)
.++|+++++--.-.+.|-+.+..|+..+.+.. ++|+++- |--.. . ...++.+...++++
T Consensus 96 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~-~lPiilY-n~P~~-t-g~~l~~~~~~~La~ 154 (292)
T 3daq_A 96 LGADAIMLITPYYNKTNQRGLVKHFEAIADAV-KLPVVLY-NVPSR-T-NMTIEPETVEILSQ 154 (292)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH-CSCEEEE-ECHHH-H-SCCCCHHHHHHHHT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEE-ecccc-c-CCCCCHHHHHHHhc
Confidence 38999999965555566777888888887765 7898864 21100 1 23455566666665
No 314
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=23.66 E-value=1.3e+02 Score=18.73 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=24.4
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHh--hCCCCeEEEEeeCCCCC
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVT--YAENAKIFLCGNKSDLE 67 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~--~~~~~pvvlvgnK~Dl~ 67 (170)
..|.+|+=+++.+...++ ++..++. ..+.+|+|++....+..
T Consensus 51 ~~dlii~d~~l~~~~g~~----~~~~l~~~~~~~~~pii~~s~~~~~~ 94 (142)
T 3cg4_A 51 FSGVVLLDIMMPGMDGWD----TIRAILDNSLEQGIAIVMLTAKNAPD 94 (142)
T ss_dssp CCEEEEEESCCSSSCHHH----HHHHHHHTTCCTTEEEEEEECTTCCC
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhhcccCCCCEEEEECCCCHH
Confidence 356555555444444443 3444555 34789999988877643
No 315
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=23.38 E-value=1.2e+02 Score=23.16 Aligned_cols=39 Identities=21% Similarity=0.132 Sum_probs=30.2
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEE
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlv 60 (170)
.++|+++++--.-.+.|-+.+..|+..+.... ++|+++-
T Consensus 110 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~-~lPiilY 148 (304)
T 3cpr_A 110 AGADGLLVVTPYYSKPSQEGLLAHFGAIAAAT-EVPICLY 148 (304)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC-CSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEE
Confidence 48999999866555667778888888888765 6898763
No 316
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=23.34 E-value=1.1e+02 Score=23.20 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=33.1
Q ss_pred hccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 19 YYKFAEAAILVFSLDN----------AASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~----------~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
.+.++|.+|++..+-. +......+.....+..+.++..++++.|=.|+
T Consensus 69 a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~ 126 (317)
T 2ewd_A 69 DISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDV 126 (317)
T ss_dssp GGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHH
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHH
Confidence 4678999998874322 23344456777788877788878888886664
No 317
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=23.27 E-value=88 Score=19.23 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhCCCCeEEE
Q psy17235 39 HVLSQHLLEIVTYAENAKIFL 59 (170)
Q Consensus 39 ~~~~~~~~~i~~~~~~~pvvl 59 (170)
+.+..++.+++....++.+++
T Consensus 36 delkkyleefrkesqnikvli 56 (110)
T 2kpo_A 36 DELKKYLEEFRKESQNIKVLI 56 (110)
T ss_dssp HHHHHHHHHHTSSTTSEEEEE
T ss_pred HHHHHHHHHHHhhccCeEEEE
Confidence 445667777776666776654
No 318
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=22.87 E-value=63 Score=22.66 Aligned_cols=69 Identities=9% Similarity=-0.076 Sum_probs=41.7
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-----------CCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhc
Q psy17235 17 SSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-----------AENAKIFLCGNKSDLEGTTPQVTEADMENFWSRR 85 (170)
Q Consensus 17 ~~~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~-----------~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~ 85 (170)
...+..||++|++.-+-+-.---.++.|+..+... ..+.|++++++--.... ... ....+.+....
T Consensus 62 ~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~-~~~--~~~l~~~l~~~ 138 (192)
T 3fvw_A 62 REEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASP-EEV--FEDYRSLLPFI 138 (192)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC----CC--SHHHHHHHHHT
T ss_pred HHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcch-hHH--HHHHHHHHHHc
Confidence 34567899999997665544334556777776531 25678888776654222 222 25566677777
Q ss_pred CCC
Q psy17235 86 SSR 88 (170)
Q Consensus 86 ~~~ 88 (170)
|+.
T Consensus 139 G~~ 141 (192)
T 3fvw_A 139 RMH 141 (192)
T ss_dssp TCE
T ss_pred CCe
Confidence 764
No 319
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=22.80 E-value=1.3e+02 Score=18.69 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=30.3
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEE
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKP 92 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e 92 (170)
..|.+++=+++.+...++- +..++...+++|+|++....+. + ...-+-..|+..|+.
T Consensus 49 ~~dlvilD~~lp~~~g~~~----~~~l~~~~~~~~ii~ls~~~~~---------~-~~~~~~~~ga~~~l~ 105 (133)
T 3b2n_A 49 NPNVVILDIEMPGMTGLEV----LAEIRKKHLNIKVIIVTTFKRP---------G-YFEKAVVNDVDAYVL 105 (133)
T ss_dssp CCSEEEECSSCSSSCHHHH----HHHHHHTTCSCEEEEEESCCCH---------H-HHHHHHHTTCSEEEE
T ss_pred CCCEEEEecCCCCCCHHHH----HHHHHHHCCCCcEEEEecCCCH---------H-HHHHHHHcCCcEEEE
Confidence 4576665444444344433 3344444478898887665441 1 222334567766764
No 320
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=22.80 E-value=2.2e+02 Score=21.46 Aligned_cols=87 Identities=14% Similarity=0.013 Sum_probs=46.6
Q ss_pred eEEecCCcccccc--chh--hhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCH
Q psy17235 2 QLWDTGGMERVAS--ITS--SYYK--FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE 75 (170)
Q Consensus 2 ~iwDt~G~e~~~~--~~~--~~~~--~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~ 75 (170)
-|.||+|...... +.. ..+. ..+.+++|+|.+.. ...+..+...+.. -+. .-+|.||.|... . .
T Consensus 186 vIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~--l~~-~giVltk~D~~~-~----~ 255 (296)
T 2px0_A 186 VFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS--VPV-NQYIFTKIDETT-S----L 255 (296)
T ss_dssp EEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS--SCC-CEEEEECTTTCS-C----C
T ss_pred EEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc--CCC-CEEEEeCCCccc-c----h
Confidence 4789999754322 111 1222 36788999987642 2334344332221 122 234569999754 1 1
Q ss_pred HHHHHHHHhcCCCeEEEcccCCcchh
Q psy17235 76 ADMENFWSRRSSRRFKPQEVVEPQEV 101 (170)
Q Consensus 76 ~~~~~~a~~~~~~~~~e~Sa~~~~~v 101 (170)
..+...+...+.|..+.+ +|+++
T Consensus 256 g~~~~~~~~~~~pi~~i~---~ge~v 278 (296)
T 2px0_A 256 GSVFNILAESKIGVGFMT---NGQNV 278 (296)
T ss_dssp HHHHHHHHTCSCCCSEEC---CSSCT
T ss_pred hHHHHHHHHHCcCEEEEE---CCCCC
Confidence 255667777888754432 44554
No 321
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=22.77 E-value=79 Score=20.02 Aligned_cols=20 Identities=0% Similarity=0.180 Sum_probs=13.1
Q ss_pred EEEEEEeCCChhhHHHHHHH
Q psy17235 25 AAILVFSLDNAASFHVLSQH 44 (170)
Q Consensus 25 ~iilv~D~t~~~Sf~~~~~~ 44 (170)
-++++||+++......+.+.
T Consensus 4 ~~lV~YDI~~~kr~~kv~k~ 23 (101)
T 2ivy_A 4 LYLIFYDITDDNLRNRVAEF 23 (101)
T ss_dssp EEEEEEEECCHHHHHHHHHH
T ss_pred EEEEEEeCCChHHHHHHHHH
Confidence 47899999876544444333
No 322
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=22.69 E-value=74 Score=24.55 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=33.1
Q ss_pred hhccCCcEEEEEEeCCChh---h---H----HHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 18 SYYKFAEAAILVFSLDNAA---S---F----HVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~~---S---f----~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
..+.++|.+|++....... . + .-++...+.+.+++++.-+++++|=.|.
T Consensus 74 ~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~ 132 (315)
T 3tl2_A 74 ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDA 132 (315)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHH
T ss_pred HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHH
Confidence 4578999999987554321 1 1 2234566677777788888999987664
No 323
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=22.42 E-value=97 Score=23.49 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=30.6
Q ss_pred hccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 19 YYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~~----------~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
.+.++|.+|++...... .+..-++...+.+.+++++..++++.|=.|.
T Consensus 64 a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~ 121 (304)
T 2v6b_A 64 ELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDL 121 (304)
T ss_dssp GGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHH
T ss_pred HhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHH
Confidence 47799999998754321 2333445666777777778877777887775
No 324
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=22.26 E-value=1.2e+02 Score=23.10 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=32.7
Q ss_pred hccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 19 YYKFAEAAILVFSLDNA----------ASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~~----------~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
.+.++|.+|+....... .+..-+....+.+.+++++.-++++.|=+|.
T Consensus 64 a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~ 121 (308)
T 2d4a_B 64 DMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDA 121 (308)
T ss_dssp GGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHH
T ss_pred HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHH
Confidence 47899999998655431 1222234666777777788888888886664
No 325
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=22.26 E-value=89 Score=22.89 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=21.6
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
++.||+|++-...+. . .+..+.. .++|+|+++...+.
T Consensus 64 ~~vdGiIi~~~~~~~---~----~~~~l~~--~~iPvV~~~~~~~~ 100 (294)
T 3qk7_A 64 RRVDALIVAHTQPED---F----RLQYLQK--QNFPFLALGRSHLP 100 (294)
T ss_dssp TCCSEEEECSCCSSC---H----HHHHHHH--TTCCEEEESCCCCS
T ss_pred CCCCEEEEeCCCCCh---H----HHHHHHh--CCCCEEEECCCCCC
Confidence 479998876432222 1 1222222 37999999886543
No 326
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=22.24 E-value=1.6e+02 Score=18.92 Aligned_cols=57 Identities=11% Similarity=0.197 Sum_probs=32.0
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEE
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKP 92 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e 92 (170)
..|.+|+=+++.+...++ ++..++...+++|+|++....|. +....+...|+..|+.
T Consensus 83 ~~dliilD~~l~~~~g~~----~~~~lr~~~~~~~ii~ls~~~~~----------~~~~~~~~~g~~~~l~ 139 (157)
T 3hzh_A 83 NIDIVTLXITMPKMDGIT----CLSNIMEFDKNARVIMISALGKE----------QLVKDCLIKGAKTFIV 139 (157)
T ss_dssp GCCEEEECSSCSSSCHHH----HHHHHHHHCTTCCEEEEESCCCH----------HHHHHHHHTTCSEEEE
T ss_pred CCCEEEEeccCCCccHHH----HHHHHHhhCCCCcEEEEeccCcH----------HHHHHHHHcCCCEEEe
Confidence 346666555555544443 34444555578888887655442 2233455677776654
No 327
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=22.20 E-value=88 Score=20.09 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=17.9
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCC
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSD 65 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~D 65 (170)
..|.+|+=+++.+...++ ++..+....+++|+|++....+
T Consensus 50 ~~dlvi~d~~l~~~~g~~----~~~~l~~~~~~~~ii~ls~~~~ 89 (154)
T 2qsj_A 50 TVDLILLDVNLPDAEAID----GLVRLKRFDPSNAVALISGETD 89 (154)
T ss_dssp CCSEEEECC------CHH----HHHHHHHHCTTSEEEEC-----
T ss_pred CCCEEEEeCCCCCCchHH----HHHHHHHhCCCCeEEEEeCCCC
Confidence 457666555554444443 3444555567899988765544
No 328
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=22.17 E-value=67 Score=24.75 Aligned_cols=49 Identities=8% Similarity=0.067 Sum_probs=32.6
Q ss_pred hhccCCcEEEEEEeCCChh---hH-------HHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 18 SYYKFAEAAILVFSLDNAA---SF-------HVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~~---Sf-------~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
..+.++|.+|++-...... .. .-++...+.+.+++++.-+++++|=.|.
T Consensus 65 ~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~ 123 (312)
T 3hhp_A 65 PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNT 123 (312)
T ss_dssp HHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHH
T ss_pred HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchh
Confidence 4578999999987654321 11 2223555667777788888888887663
No 329
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=22.16 E-value=1.9e+02 Score=20.30 Aligned_cols=66 Identities=5% Similarity=0.017 Sum_probs=37.0
Q ss_pred CcEEEEEEeCCChh-----hH----HHHHHHHHHHHhhC-----CCCeEEEEeeCCCCCCCCC------------CCCHH
Q psy17235 23 AEAAILVFSLDNAA-----SF----HVLSQHLLEIVTYA-----ENAKIFLCGNKSDLEGTTP------------QVTEA 76 (170)
Q Consensus 23 ad~iilv~D~t~~~-----Sf----~~~~~~~~~i~~~~-----~~~pvvlvgnK~Dl~~~~~------------~v~~~ 76 (170)
+|.+++.+-.+|.. +. ..+...+..++... ++.+++|++. ........ .--..
T Consensus 102 ~d~VvI~~GtND~~~~~~~~~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~~p-~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (232)
T 3dci_A 102 LDLVIIMLGTNDIKPVHGGRAEAAVSGMRRLAQIVETFIYKPREAVPKLLIVAP-PPCVAGPGGEPAGGRDIEQSMRLAP 180 (232)
T ss_dssp CSEEEEECCTTTTSGGGTSSHHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEEEC-CCCCCCTTSSCGGGCCHHHHTTHHH
T ss_pred CCEEEEEeccCCCccccCCCHHHHHHHHHHHHHHHHHhcccccCCCCeEEEEeC-CCcCcccCcccccccHHHHHHHHHH
Confidence 49999999777743 22 33445556666654 5777777752 22211000 01123
Q ss_pred HHHHHHHhcCCCe
Q psy17235 77 DMENFWSRRSSRR 89 (170)
Q Consensus 77 ~~~~~a~~~~~~~ 89 (170)
..+++|++.++++
T Consensus 181 ~~~~~a~~~~v~~ 193 (232)
T 3dci_A 181 LYRKLAAELGHHF 193 (232)
T ss_dssp HHHHHHHHHTCEE
T ss_pred HHHHHHHHhCCeE
Confidence 5677888888853
No 330
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=22.10 E-value=1.2e+02 Score=23.19 Aligned_cols=69 Identities=14% Similarity=0.031 Sum_probs=44.3
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHH-HhcCCCeEEEc
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFW-SRRSSRRFKPQ 93 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a-~~~~~~~~~e~ 93 (170)
.++|+++++--.-.+.|-+.+..|+..+.... ++|+++- |--.. . ...++.+...+++ +.-++..+-++
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilY-n~P~~-t-g~~l~~~~~~~La~~~pnIvgiKds 175 (306)
T 1o5k_A 106 LGANGVLVVTPYYNKPTQEGLYQHYKYISERT-DLGIVVY-NVPGR-T-GVNVLPETAARIAADLKNVVGIXEA 175 (306)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHTTC-SSCEEEE-ECHHH-H-SCCCCHHHHHHHHHHCTTEEEEEEC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEE-eCccc-c-CcCCCHHHHHHHHHhCCCEEEEeCC
Confidence 48999999866555567788888998888764 7898763 31111 1 2356778888888 43344333333
No 331
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=22.07 E-value=1.8e+02 Score=20.63 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=14.0
Q ss_pred cCCcEEEEEEeCCChhh
Q psy17235 21 KFAEAAILVFSLDNAAS 37 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~S 37 (170)
.++|.+|++=|+++...
T Consensus 31 ~~~D~vi~~GDl~~~~~ 47 (260)
T 2yvt_A 31 KQPDILVVVGNILKNEA 47 (260)
T ss_dssp HCCSEEEEESCCCCCHH
T ss_pred cCCCEEEECCCCCCccC
Confidence 47999999999988654
No 332
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=22.05 E-value=1.6e+02 Score=22.78 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=26.0
Q ss_pred eEEecCCccccccchhhhccCCcEEEEEEeCCChhhHHHHHH
Q psy17235 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQ 43 (170)
Q Consensus 2 ~iwDt~G~e~~~~~~~~~~~~ad~iilv~D~t~~~Sf~~~~~ 43 (170)
-|+|||..- .......+..+|.+|++... +..|+..+..
T Consensus 157 VIID~pP~l--~~~~~~aL~~aD~viip~~~-~~~s~~~~~~ 195 (361)
T 3pg5_A 157 IFFDVGPSL--GPFNRTVLLGCDAFVTPTAT-DLFSFHAFGN 195 (361)
T ss_dssp EEEECCSCC--SHHHHHHHTTCSEEEEEECC-SHHHHHHHHH
T ss_pred EEEECCCCc--CHHHHHHHHHCCEEEEEecC-ChHHHHHHHH
Confidence 478998643 34445566779999999875 4566655543
No 333
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=21.82 E-value=1.1e+02 Score=22.26 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=21.7
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
.++||+|++- ..... ..+..+.. .++|+|++++..+.
T Consensus 65 ~~vdgiIi~~-~~~~~------~~~~~l~~--~~iPvV~i~~~~~~ 101 (288)
T 3gv0_A 65 GSADGVIISK-IEPND------PRVRFMTE--RNMPFVTHGRSDMG 101 (288)
T ss_dssp TCCSEEEEES-CCTTC------HHHHHHHH--TTCCEEEESCCCSS
T ss_pred CCccEEEEec-CCCCc------HHHHHHhh--CCCCEEEECCcCCC
Confidence 6899999763 22111 11222332 37999999877543
No 334
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=21.74 E-value=1.2e+02 Score=22.90 Aligned_cols=38 Identities=21% Similarity=0.093 Sum_probs=29.4
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEE
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL 59 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvl 59 (170)
.++|+++++--.-.+.|-+.+..|+..+.+.. ++|+++
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~-~lPiil 132 (292)
T 2ojp_A 95 SGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHT-DLPQIL 132 (292)
T ss_dssp SSCSEEEEECCCSSCCCHHHHHHHHHHHHTTC-SSCEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEE
Confidence 48999999866655567788888888887764 688876
No 335
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=21.20 E-value=2.3e+02 Score=21.25 Aligned_cols=59 Identities=3% Similarity=-0.016 Sum_probs=39.6
Q ss_pred cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhC--CCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEE
Q psy17235 21 KFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYA--ENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKP 92 (170)
Q Consensus 21 ~~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~--~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e 92 (170)
.++|++.+-.-++.. .+...+...++.+.+.. +++|+++.|.-.| ..++++.|...|+.
T Consensus 179 ~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~-------------~~~a~~iGad~~~~ 240 (262)
T 1xrs_B 179 LEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRIN-------------NEIAKELGYDAGFG 240 (262)
T ss_dssp TTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCC-------------HHHHHTTTCSEEEC
T ss_pred cCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcCC-------------HHHHHHcCCeEEEC
Confidence 478877665554432 17778888888887765 4588888776432 24677889887764
No 336
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=21.05 E-value=1.5e+02 Score=18.10 Aligned_cols=58 Identities=7% Similarity=0.028 Sum_probs=30.1
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEc
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQ 93 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~ 93 (170)
..|.+++=+++.+...++ ++..++...+++|+|++....+. +...-+...|+..|+.-
T Consensus 51 ~~dlvi~d~~l~~~~g~~----~~~~l~~~~~~~~ii~~t~~~~~----------~~~~~~~~~g~~~~l~K 108 (130)
T 3eod_A 51 TPDLMICDIAMPRMNGLK----LLEHIRNRGDQTPVLVISATENM----------ADIAKALRLGVEDVLLK 108 (130)
T ss_dssp CCSEEEECCC-----CHH----HHHHHHHTTCCCCEEEEECCCCH----------HHHHHHHHHCCSEEEES
T ss_pred CCCEEEEecCCCCCCHHH----HHHHHHhcCCCCCEEEEEcCCCH----------HHHHHHHHcCCCEEEeC
Confidence 356666555444444443 34445555578899888665441 22233445777777653
No 337
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=21.05 E-value=1.7e+02 Score=18.59 Aligned_cols=58 Identities=10% Similarity=-0.003 Sum_probs=32.7
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEEc
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQ 93 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e~ 93 (170)
..|.+|+=+++.+...++ .+..++...+++|+|++....|. +....+...|+..|+.-
T Consensus 66 ~~dlii~D~~l~~~~g~~----~~~~l~~~~~~~~ii~ls~~~~~----------~~~~~~~~~g~~~~l~K 123 (150)
T 4e7p_A 66 SVDIAILDVEMPVKTGLE----VLEWIRSEKLETKVVVVTTFKRA----------GYFERAVKAGVDAYVLK 123 (150)
T ss_dssp CCSEEEECSSCSSSCHHH----HHHHHHHTTCSCEEEEEESCCCH----------HHHHHHHHTTCSEEEET
T ss_pred CCCEEEEeCCCCCCcHHH----HHHHHHHhCCCCeEEEEeCCCCH----------HHHHHHHHCCCcEEEec
Confidence 356665555554444443 34445555578898887765541 22334456777777643
No 338
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=20.91 E-value=1.3e+02 Score=23.43 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=39.7
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHH
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFW 82 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a 82 (170)
.++|+++++--.-.+.|-+.+..++..+.... ++|+++- |--... ...++.+...+++
T Consensus 125 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~-~lPiilY-n~P~~t--g~~l~~e~~~~La 182 (343)
T 2v9d_A 125 AGADGIVVINPYYWKVSEANLIRYFEQVADSV-TLPVMLY-NFPALT--GQDLTPALVKTLA 182 (343)
T ss_dssp HTCSEEEEECCSSSCCCHHHHHHHHHHHHHTC-SSCEEEE-ECHHHH--SSCCCHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CCCEEEE-eCchhc--CcCCCHHHHHHHH
Confidence 48999999866655567788888888888764 7898763 311111 2346677777777
No 339
>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein STRU initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.114.1.1
Probab=20.89 E-value=1.6e+02 Score=18.37 Aligned_cols=37 Identities=11% Similarity=0.210 Sum_probs=20.5
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEee
Q psy17235 26 AILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGN 62 (170)
Q Consensus 26 iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgn 62 (170)
+++-+|-.+++.+...-.+...+.+..++..+.||.+
T Consensus 6 vv~~v~~~d~~~~~~~L~~a~n~~~~~~~~~i~vv~~ 42 (113)
T 1l1s_A 6 VVFHIDEDDESRVLLLISNVRNLMADLESVRIEVVAY 42 (113)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHHHCSSEEEEEEEC
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 4444554555566665556566555555555555544
No 340
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=20.63 E-value=1.7e+02 Score=18.55 Aligned_cols=57 Identities=9% Similarity=0.168 Sum_probs=33.9
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCCeEEE
Q psy17235 22 FAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKP 92 (170)
Q Consensus 22 ~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~~~~e 92 (170)
..|.+|+=+++.+...++ .+..++...+++|+|++....|. +...-+...|+..|+.
T Consensus 61 ~~dlii~d~~l~~~~g~~----~~~~l~~~~~~~~ii~~s~~~~~----------~~~~~~~~~g~~~~l~ 117 (152)
T 3eul_A 61 LPDVALLDYRMPGMDGAQ----VAAAVRSYELPTRVLLISAHDEP----------AIVYQALQQGAAGFLL 117 (152)
T ss_dssp CCSEEEEETTCSSSCHHH----HHHHHHHTTCSCEEEEEESCCCH----------HHHHHHHHTTCSEEEE
T ss_pred CCCEEEEeCCCCCCCHHH----HHHHHHhcCCCCeEEEEEccCCH----------HHHHHHHHcCCCEEEe
Confidence 467766666555545444 34445555578898888665442 2233445678877765
No 341
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=20.61 E-value=91 Score=24.14 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=33.8
Q ss_pred hhccCCcEEEEEEeCCCh------hhH----HHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 18 SYYKFAEAAILVFSLDNA------ASF----HVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~------~Sf----~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
..+.++|.+|++...... +-+ .-++...+.+.+++++.-+++++|=+|.
T Consensus 71 ~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~ 129 (324)
T 3gvi_A 71 AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDA 129 (324)
T ss_dssp GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHH
T ss_pred HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHH
Confidence 457899999998654321 112 2234566777777889999999998775
No 342
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=20.55 E-value=1.2e+02 Score=22.89 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=29.7
Q ss_pred cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhCCCCeEEEE
Q psy17235 21 KFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLC 60 (170)
Q Consensus 21 ~~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~~~~pvvlv 60 (170)
.++|+++++--.-.+ .|-+.+..|+..+.... ++|+++-
T Consensus 89 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~-~lPiilY 128 (286)
T 2r91_A 89 RGAEAVASLPPYYFPRLSERQIAKYFRDLCSAV-SIPVFLY 128 (286)
T ss_dssp TTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHC-SSCEEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc-CCCEEEE
Confidence 489999998665555 57778888888888765 6887763
No 343
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=20.46 E-value=1.2e+02 Score=23.11 Aligned_cols=38 Identities=24% Similarity=0.148 Sum_probs=29.6
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEE
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL 59 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvl 59 (170)
.++|+++++--.-.+.|-+.+..++..+.... ++|+++
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiil 131 (297)
T 2rfg_A 94 AGADAVLCVAGYYNRPSQEGLYQHFKMVHDAI-DIPIIV 131 (297)
T ss_dssp HTCSEEEECCCTTTCCCHHHHHHHHHHHHHHC-SSCEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc-CCCEEE
Confidence 48999999866655567788888888888765 688876
No 344
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=20.28 E-value=1.3e+02 Score=22.85 Aligned_cols=49 Identities=6% Similarity=0.146 Sum_probs=32.8
Q ss_pred hhccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhCCCCeEEEEeeCCCC
Q psy17235 18 SYYKFAEAAILVFSLDNAA----------SFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66 (170)
Q Consensus 18 ~~~~~ad~iilv~D~t~~~----------Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl 66 (170)
..+++||.+|+...+.... +..-.....+.+.+++++..+++++|=+|.
T Consensus 70 ~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~ 128 (316)
T 1ldn_A 70 DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDI 128 (316)
T ss_dssp GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHH
T ss_pred HHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHH
Confidence 3478999999996554321 122334566677777788888888887764
No 345
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=20.26 E-value=1.2e+02 Score=22.87 Aligned_cols=39 Identities=8% Similarity=-0.056 Sum_probs=29.6
Q ss_pred cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhCCCCeEEEE
Q psy17235 21 KFAEAAILVFSLDNA-ASFHVLSQHLLEIVTYAENAKIFLC 60 (170)
Q Consensus 21 ~~ad~iilv~D~t~~-~Sf~~~~~~~~~i~~~~~~~pvvlv 60 (170)
.++|+++++--.-.+ .|-+.+..++..+.... ++|+++-
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~-~lPiilY 129 (288)
T 2nuw_A 90 MDILGVSSHSPYYFPRLPEKFLAKYYEEIARIS-SHSLYIY 129 (288)
T ss_dssp SCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHC-CSCEEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc-CCCEEEE
Confidence 489999998665555 57778888888888765 6887763
No 346
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=20.23 E-value=2.1e+02 Score=19.47 Aligned_cols=69 Identities=10% Similarity=-0.001 Sum_probs=41.0
Q ss_pred hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-----CCCCeEEEEeeCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy17235 19 YYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY-----AENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSR 88 (170)
Q Consensus 19 ~~~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~-----~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a~~~~~~ 88 (170)
.+..+|++|+.+-+-.-.--..++.|+..+... ..+.|+.++++--.... ...-.......+....|+.
T Consensus 67 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~-g~~~~~~~l~~~l~~~g~~ 140 (199)
T 2zki_A 67 DMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHG-GHETTILTMSTYAYHFGMI 140 (199)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTS-SSSHHHHHHTHHHHHHTCE
T ss_pred HHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCC-CHHHHHHHHHHHHHHCCeE
Confidence 467899999998776543334456666665322 25678877776543322 1222345666677777763
No 347
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=20.18 E-value=2.5e+02 Score=21.43 Aligned_cols=54 Identities=6% Similarity=0.063 Sum_probs=36.9
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhCCCCeEEEEeeCCCCCCCCCCCCHHHHHHHH
Q psy17235 21 KFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFW 82 (170)
Q Consensus 21 ~~ad~iilv~D~t~~~Sf~~~~~~~~~i~~~~~~~pvvlvgnK~Dl~~~~~~v~~~~~~~~a 82 (170)
.++|+++++--.-.+.|-+.+..|+..+.... ++|+++-=+.. .++.+...+++
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~lPiilYn~g~-------~l~~~~~~~La 158 (316)
T 3e96_A 105 AGADAVMIHMPIHPYVTAGGVYAYFRDIIEAL-DFPSLVYFKDP-------EISDRVLVDLA 158 (316)
T ss_dssp HTCSEEEECCCCCSCCCHHHHHHHHHHHHHHH-TSCEEEEECCT-------TSCTHHHHHHT
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC-CCCEEEEeCCC-------CCCHHHHHHHH
Confidence 38999998855555567788888998888775 58988753233 34445555555
Done!