RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17235
(170 letters)
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 81.8 bits (203), Expect = 2e-20
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+Q+WDT G ER +ITS+YY+ I+V+ + +A SF + + L EI ++ L
Sbjct: 60 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILV 119
Query: 61 GNKSDLEGTTPQVTEADMENF 81
GNK+D V D F
Sbjct: 120 GNKNDDP-ERKVVETEDAYKF 139
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 81.9 bits (203), Expect = 3e-20
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
MQ+WDT G ER S+ ++Y+ A+ +LV+ + NA+SF + E + +A E
Sbjct: 60 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 119
Query: 56 KIFLCGNKSDLEGTTPQVTEADMENF 81
+ GNK D E + V+E +
Sbjct: 120 PFVILGNKIDAEESKKIVSEKSAQEL 145
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 79.8 bits (198), Expect = 1e-19
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+ LWDT G E +IT +YY+ A+A +LVFS + SF +S ++V + L
Sbjct: 56 LMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALV 115
Query: 61 GNKSDLEGTTPQVTEADMENF 81
NK DL + + E
Sbjct: 116 QNKIDLL-DDSCIKNEEAEGL 135
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 80.1 bits (198), Expect = 3e-19
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
+QLWDT G ER S+T+++++ A +L+F L + SF + + ++ A EN I
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 59 LCGNKSDLEGTTPQVTEADMENF 81
L GNK+DL +V E
Sbjct: 146 LIGNKADLP-DQREVNERQAREL 167
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 78.4 bits (194), Expect = 4e-19
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A ILV+ + + +F + Q + +A + A++ L
Sbjct: 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLL 113
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNKSD+E VT E
Sbjct: 114 VGNKSDMETR--VVTADQGEAL 133
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 78.8 bits (195), Expect = 4e-19
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 126
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNK DL T V + F
Sbjct: 127 VGNKCDLT-TKKVVDYTTAKEF 147
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 78.8 bits (195), Expect = 4e-19
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
+QLWDT G+ER S+T+++++ A +L+F L N SF + + ++ +A EN I
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 59 LCGNKSDLEGTTPQVTEADMENF 81
LCGNKSDLE V E +
Sbjct: 132 LCGNKSDLE-DQRAVKEEEAREL 153
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 78.4 bits (194), Expect = 5e-19
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A +LV+ + N SF + + I +A + + +
Sbjct: 59 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMI 118
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNK D+ QV++ E
Sbjct: 119 LGNKCDVN-DKRQVSKERGEKL 139
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 78.9 bits (195), Expect = 6e-19
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
Q+WDT G ER ITS+YY+ A A+LV+ + ++ + + L E+ +A N I L
Sbjct: 56 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 115
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNKSDL V + F
Sbjct: 116 VGNKSDLR-HLRAVPTDEARAF 136
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 78.4 bits (194), Expect = 6e-19
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 74 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVIL 133
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNK D+E V +
Sbjct: 134 VGNKCDME-EERVVPTEKGQLL 154
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 78.4 bits (194), Expect = 6e-19
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER S+T +YY+ A A +L++ + N ASF + L EI YA + + L
Sbjct: 62 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 121
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNK D V D E
Sbjct: 122 LGNKVDSA-HERVVKREDGEKL 142
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 78.5 bits (194), Expect = 6e-19
Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ A I+V+ + + SF+ + Q L EI YA EN L
Sbjct: 84 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 143
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNK DL T V + F
Sbjct: 144 VGNKCDLT-TKKVVDYTTAKEF 164
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 78.9 bits (195), Expect = 7e-19
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+WDT G E+ + YY A+ AI++F + + ++ + ++V EN I LC
Sbjct: 66 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 125
Query: 61 GNKSDLE 67
GNK D++
Sbjct: 126 GNKVDIK 132
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 78.5 bits (194), Expect = 7e-19
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G+ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 59 LQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 118
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNK D+E V+
Sbjct: 119 VGNKCDME-DERVVSSERGRQL 139
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 79.0 bits (195), Expect = 9e-19
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
Q+WDT G ER +ITS+YY+ A A++V+ + ++S+ + L E+ A +N + L
Sbjct: 64 AQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGL 123
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNKSDL V + + F
Sbjct: 124 IGNKSDLA-HLRAVPTEESKTF 144
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 78.0 bits (193), Expect = 9e-19
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
Q+WDT G+ER +ITS+YY+ A A+LV+ + ++ + + L E+ +A N I L
Sbjct: 80 AQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 139
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNKSDL V + F
Sbjct: 140 VGNKSDLR-HLRAVPTDEARAF 160
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 78.0 bits (193), Expect = 1e-18
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A +L++ + N SF + +I TY+ +NA++ L
Sbjct: 73 LQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVIL 132
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNK DLE V D
Sbjct: 133 VGNKCDLE-DERVVPAEDGRRL 153
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 78.1 bits (193), Expect = 1e-18
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+QLWDT G ER +IT++YY+ A ILV+ + + +F + Q + +A + A++ L
Sbjct: 71 LQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLL 130
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNKSD+E VT E
Sbjct: 131 VGNKSDMETR--VVTADQGEAL 150
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 77.7 bits (192), Expect = 2e-18
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT SYY+ A AIL + + +SF + + ++ YA N L
Sbjct: 80 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 139
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNKSDL +V+ A+ ++
Sbjct: 140 IGNKSDLS-ELREVSLAEAQSL 160
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 77.7 bits (192), Expect = 2e-18
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +ITSSYY+ + I+V+ + + SF+ + L EI YA L
Sbjct: 59 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 118
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNK DL+ V + F
Sbjct: 119 VGNKCDLK-DKRVVEYDVAKEF 139
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 77.3 bits (191), Expect = 2e-18
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER SITS+YY+ A+ ILV+ + +F L + + I YA E+A++ L
Sbjct: 77 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 136
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNK D E T ++T E F
Sbjct: 137 VGNKLDCE-TDREITRQQGEKF 157
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 77.3 bits (191), Expect = 2e-18
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
Q+WDT G+ER +ITS+YY+ A A+LVF L ++ V+ + L E+ +A + L
Sbjct: 76 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 135
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNKSDL +V + F
Sbjct: 136 VGNKSDLS-QAREVPTEEARMF 156
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 77.3 bits (191), Expect = 2e-18
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER SIT SYY+ A A IL + + SF L + L EI YA L
Sbjct: 77 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNK DL +V++ E F
Sbjct: 137 VGNKIDLA-ERREVSQQRAEEF 157
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 76.8 bits (190), Expect = 3e-18
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
Q+WDT G ER S+T SYY+ A A+LV+ + + +++ L+ L + A +N I LC
Sbjct: 62 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC 121
Query: 61 GNKSDLEGTTPQVTEADMENF 81
GNK DL+ +VT + F
Sbjct: 122 GNKKDLD-ADREVTFLEASRF 141
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 76.9 bits (190), Expect = 3e-18
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G E SIT SYY+ A A+LV+ + +F+ L+ L + ++ N I L
Sbjct: 72 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIML 131
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNKSDLE + V + E F
Sbjct: 132 IGNKSDLE-SRRDVKREEGEAF 152
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 76.9 bits (190), Expect = 3e-18
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+QLWDT G ER SI SY++ A+ +L++ + SF + + + I A E I L
Sbjct: 79 LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIML 138
Query: 60 CGNKSDLEGTTP-----QVTEADMENF 81
GNK+D+ T V E
Sbjct: 139 VGNKADIRDTAATEGQKCVPGHFGEKL 165
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 76.5 bits (189), Expect = 4e-18
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER S+T SYY+ A A+LV+ + + +++ L+ L + T A N + L
Sbjct: 76 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVIL 135
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
CGNK DL+ +VT + F
Sbjct: 136 CGNKKDLD-PEREVTFLEASRF 156
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 75.7 bits (187), Expect = 5e-18
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER ++T SYY+ A A++V+ + ++++ LS L + N I L
Sbjct: 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 125
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNK+DLE VT + + F
Sbjct: 126 IGNKADLE-AQRDVTYEEAKQF 146
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 75.2 bits (186), Expect = 9e-18
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
MQ+WDT G ER S+ + +Y+ ++ +L FS+D++ SF LS E + YA E+
Sbjct: 58 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 117
Query: 56 KIFLCGNKSDLEGTTPQVTEADMENF 81
+ GNK D+ QV+ + + +
Sbjct: 118 PFVILGNKIDISER--QVSTEEAQAW 141
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 75.8 bits (187), Expect = 1e-17
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
MQ+WDT G ER S+ ++Y+ A+ +LVF + +F L E + A EN
Sbjct: 59 MQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF 118
Query: 56 KIFLCGNKSDLE 67
+ GNK DLE
Sbjct: 119 PFVVLGNKIDLE 130
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 74.1 bits (183), Expect = 2e-17
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
+WDT G+ER ++ YY+ + AAI+V+ + +F L + E+ + + + +
Sbjct: 58 LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIA 117
Query: 61 GNKSDLEGTTPQVTEADMENF 81
GNK DL +V E D +++
Sbjct: 118 GNKCDLT-DVREVMERDAKDY 137
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 74.1 bits (183), Expect = 2e-17
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
+WDT G ER ++ YY+ + AILV+ + + SF + + E+ + +
Sbjct: 58 AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV 117
Query: 61 GNKSDLEGTTPQVTEADMENF 81
GNK DLE V+ + E++
Sbjct: 118 GNKIDLE-KERHVSIQEAESY 137
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 74.1 bits (183), Expect = 2e-17
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
QLWDT G ER S+ SY + + A++V+ + N SFH S+ + ++ T + I L
Sbjct: 66 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLV 125
Query: 61 GNKSDLEGTTPQVTEADMENF 81
GNK+DL QV+ + E
Sbjct: 126 GNKTDLS-DKRQVSTEEGERK 145
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 73.7 bits (182), Expect = 2e-17
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
++WDT G ER S+ YY+ A+AAI+V+ + N SF + E+ A N I L
Sbjct: 58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALS 117
Query: 61 GNKSDLEGTTPQVTEADMENF 81
GNK+DL V + +++
Sbjct: 118 GNKADLA-NKRAVDFQEAQSY 137
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 74.7 bits (184), Expect = 3e-17
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
QLWDT G+ER S+ SY + + A++V+ + N SF ++ + ++ T + I L
Sbjct: 68 QLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV 127
Query: 61 GNKSDLEGTTPQVTEADMENF 81
GNK+DL QV+ + E
Sbjct: 128 GNKTDLA-DKRQVSIEEGERK 147
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 73.7 bits (182), Expect = 3e-17
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
++WDT G ER S+ YY+ A AAI+VF + N ASF + + E+ N + L
Sbjct: 64 EIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALA 123
Query: 61 GNKSDLEGTTPQVTEADMENF 81
GNKSDL +VT D + +
Sbjct: 124 GNKSDLL-DARKVTAEDAQTY 143
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 73.8 bits (182), Expect = 3e-17
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
+WDT G ER S+ YY+ + AA++V+ + SF+ L + + E+ + EN + +
Sbjct: 75 LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIA 134
Query: 61 GNKSDLEGTTPQVTEADMENF 81
GNK DL +V D + +
Sbjct: 135 GNKCDLS-DIREVPLKDAKEY 154
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 73.3 bits (181), Expect = 4e-17
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK---- 56
+Q+WD GG + Y A+ +LV+ + N SF L + +E ++
Sbjct: 58 LQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL 117
Query: 57 IFLCGNKSDLEGTTPQVTEADMENF 81
+ L GNK DLE + F
Sbjct: 118 VALVGNKIDLE-HMRTIKPEKHLRF 141
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 74.3 bits (183), Expect = 4e-17
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+WDT G E+ A + YY A AIL F + + + L++ + E A I +
Sbjct: 63 FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122
Query: 60 CGNKSDLE 67
C NK D++
Sbjct: 123 CANKIDIK 130
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 73.7 bits (181), Expect = 5e-17
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+WDT G ER ASI YY+ A AI+VF + N+ + + ++ N I L
Sbjct: 95 FDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS-SNYIIILV 153
Query: 61 GNKSDLEGTTPQVTEADMENF 81
NK D QV +++ +
Sbjct: 154 ANKIDKNKF--QVDILEVQKY 172
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 72.6 bits (179), Expect = 9e-17
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
+ + DT G E +++ Y + + ++V+S+ + ASF + + I+ E+ +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 59 LCGNKSDLEGTTPQVTEADMENF 81
L NK DL +VT +
Sbjct: 128 LVANKVDLMHLR-KVTRDQGKEM 149
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 72.3 bits (178), Expect = 1e-16
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI--F 58
+ +WDT G ER ++T SYY+ A+ ILV+ + +F L L E+ TY I
Sbjct: 66 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM 125
Query: 59 LCGNKSDLEGTTPQVTEADMENF 81
L GNK D E +V + F
Sbjct: 126 LVGNKIDKE--NREVDRNEGLKF 146
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 71.0 bits (175), Expect = 2e-16
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + Q+ +I ++ +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 59 LCGNKSDLEGTTPQVTEADMENF 81
L GNKSDL V ++
Sbjct: 113 LVGNKSDLA--ARTVESRQAQDL 133
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 71.9 bits (177), Expect = 2e-16
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 1 MQLW--DTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENA--- 55
++L+ DT G + S Y+ AILVF + + SF + + +
Sbjct: 73 VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP 132
Query: 56 -KIFLCGNKSDLEGTTPQVTEADMENF 81
+ L NK+DL QV +++
Sbjct: 133 LRAVLVANKTDLPPQRHQVRLDMAQDW 159
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 71.0 bits (175), Expect = 3e-16
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF 58
+ + DT G E ++ Y + +LVF++++ SF+ + + +I+ ++ +
Sbjct: 59 LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV 118
Query: 59 LCGNKSDLEGTTPQVTEADMENF 81
L GNK+DLE + QV ++ F
Sbjct: 119 LVGNKADLE-SQRQVPRSEASAF 140
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 70.9 bits (174), Expect = 4e-16
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAAS-FHVLSQHLLEIVTYAENAKIFL 59
+ +WD G E S + + V+ L + + L I A ++ + L
Sbjct: 58 LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVIL 117
Query: 60 CGNKSDLE 67
G D+
Sbjct: 118 VGTHLDVS 125
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 70.3 bits (173), Expect = 7e-16
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 1 MQLWDTGGMER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKI 57
+QLWDT G ER S+ YY+ A + V+ + N ASFH L + E + +
Sbjct: 71 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR 130
Query: 58 FLCGNKSDLEGTTPQVTEADMENF 81
L GNK DL + QV + F
Sbjct: 131 ILVGNKCDLR-SAIQVPTDLAQKF 153
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 70.3 bits (173), Expect = 7e-16
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF 58
+ + DT G E A+I +Y++ E + VFS+ SF + +I+ EN
Sbjct: 68 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 127
Query: 59 LCGNKSDLEGTTPQVTEADMENF 81
L GNKSDLE QV+ + +N
Sbjct: 128 LVGNKSDLE-DKRQVSVEEAKNR 149
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 69.8 bits (172), Expect = 7e-16
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ + DT G E A+I +Y++ E + VFS+ SF + +I V EN
Sbjct: 54 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 113
Query: 59 LCGNKSDLEGTTPQVTEADMENF 81
L GNKSDLE QV+ + +N
Sbjct: 114 LVGNKSDLE-DKRQVSVEEAKNR 135
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 69.8 bits (172), Expect = 8e-16
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIFL 59
++D + + +A ++V+S+ + SF S+ +++ ++ I L
Sbjct: 52 MVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIIL 111
Query: 60 CGNKSDLEGTTPQVTEADMENF 81
GNKSDL + +V+ +
Sbjct: 112 VGNKSDLVRSR-EVSVDEGRAC 132
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 69.5 bits (171), Expect = 1e-15
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK---I 57
+Q+ DT G + ++ A ILV+S+ + S L +I + + I
Sbjct: 53 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 112
Query: 58 FLCGNKSDLEGTTPQVTEADMENF 81
L GNK D + +V ++ E
Sbjct: 113 MLVGNKCDES-PSREVQSSEAEAL 135
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 70.0 bits (172), Expect = 1e-15
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
+ + DT G E A+I +Y++ E + VFS+ SF + +I+ EN
Sbjct: 64 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 123
Query: 59 LCGNKSDLEGTTPQVTEADMENF 81
L GNKSDLE QV+ + +N
Sbjct: 124 LVGNKSDLE-DKRQVSVEEAKNR 145
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 69.0 bits (170), Expect = 2e-15
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+++ DT G E+ AS+ Y K + ILV+SL N SF + +I V E +
Sbjct: 53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI 112
Query: 59 LCGNKSDLEGTTPQVTEADMENF 81
L GNK DLE + +V+ ++
Sbjct: 113 LVGNKVDLE-SEREVSSSEGRAL 134
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 69.5 bits (171), Expect = 2e-15
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
+ + DT G E +++ Y + E + VF+++N+ SF ++ + +I ++ +
Sbjct: 71 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130
Query: 59 LCGNKSDLEGTTPQVTEADMENF 81
L GNK DL T V
Sbjct: 131 LVGNKCDLP--TRTVDTKQAHEL 151
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 69.2 bits (170), Expect = 2e-15
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
+ + DT G E +++ Y + E + VF+++N SF + + +I E+ +
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 59 LCGNKSDLEGTTPQVTEADMENF 81
L GNK DL + V ++
Sbjct: 114 LVGNKCDLP--SRTVDTKQAQDL 134
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 67.9 bits (167), Expect = 4e-15
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+++ DT G E+ ++ Y K + LV+S+ ++F+ L +I V E+ +
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI 112
Query: 59 LCGNKSDLEGTTPQVTEADMENF 81
L GNK DLE V + +N
Sbjct: 113 LVGNKCDLEDER-VVGKEQGQNL 134
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 68.8 bits (169), Expect = 4e-15
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ L DT G + + + S+ +LV+S+ + SF V+ ++ +
Sbjct: 74 LHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV 133
Query: 59 LCGNKSDLEGTTPQVTEADMENF 81
L GNK+DL +V + +
Sbjct: 134 LVGNKADLS-PEREVQAVEGKKL 155
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 67.9 bits (167), Expect = 5e-15
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+QL DT G + + +Y ILV+S+ + SF V+ ++ + I
Sbjct: 56 LQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM 115
Query: 59 LCGNKSDLE 67
L GNK DL
Sbjct: 116 LVGNKKDLH 124
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 66.8 bits (164), Expect = 1e-14
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 1 MQLWDTGGMER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKI 57
+ ++D + + +A ++VFS+ + SF + + LL + + +
Sbjct: 53 LIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV 112
Query: 58 FLCGNKSDLEGTTPQVTEADMENF 81
L GNKSDL + +V+ + +
Sbjct: 113 ILVGNKSDLARSR-EVSLEEGRHL 135
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 66.9 bits (164), Expect = 2e-14
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 1 MQLWDTGGMER-VASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKI 57
+ ++D + + +A ++VFS+ + SF + + LL + + +
Sbjct: 74 LVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV 133
Query: 58 FLCGNKSDLEGTTPQVTEADMENF 81
L GNKSDL + +V+ + +
Sbjct: 134 ILVGNKSDLARSR-EVSLEEGRHL 156
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 66.9 bits (164), Expect = 2e-14
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLS---QHLLEIVTYAENAKI 57
+Q+ DT G + ++ A ILVFS+ + S L + +++I E+ +
Sbjct: 58 LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117
Query: 58 FLCGNKSDLEGTTPQVTEADMENF 81
L GNK D +V + +
Sbjct: 118 MLVGNKCDET--QREVDTREAQAV 139
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 63.9 bits (156), Expect = 2e-13
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ +W+ G + + +A ++V+S+ + ASF S+ +++ E+ I
Sbjct: 61 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 59 LCGNKSDLE 67
L GNKSDL
Sbjct: 119 LVGNKSDLV 127
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 63.9 bits (156), Expect = 3e-13
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
+ +W+ G + + +A ++V+S+ + ASF S+ +++ E+ I
Sbjct: 92 LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 59 LCGNKSDLE 67
L GNKSDL
Sbjct: 150 LVGNKSDLV 158
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 63.3 bits (155), Expect = 3e-13
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 1 MQLWDTGGMERVASITS--SYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAK 56
+ + DT E++ S S + A ++V+S+ + SF S+ +++ A++
Sbjct: 54 LVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP 113
Query: 57 IFLCGNKSDLE 67
I L GNK+DL
Sbjct: 114 IILVGNKADLA 124
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 65.4 bits (159), Expect = 3e-13
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
WD GG E + + + + +L+ ++ + L I Y + + +
Sbjct: 100 FHFWDFGGQEIMHASHQFFMTRSSVYMLLL---DSRTDSNKHYWLRHIEKYGGKSPVIVV 156
Query: 61 GNKSDLEGTTPQVTEADMENF 81
NK D + + + +
Sbjct: 157 MNKIDEN-PSYNIEQKKINER 176
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 63.3 bits (155), Expect = 3e-13
Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
+ + D GG + + + +A + VFSL++ SF + + L + ++ +
Sbjct: 69 LLIRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMV 123
Query: 59 LCGNKSDLEGTTP-QVTEADMENF 81
L G + + P + ++
Sbjct: 124 LVGTQDAISAANPRVIDDSRARKL 147
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 62.6 bits (153), Expect = 6e-13
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEI--VTYAENAKIF 58
M++ DT G E + ++ E +LV+ + + SF + + + +N +
Sbjct: 78 MEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI 136
Query: 59 LCGNKSDLE 67
L GNK+DL+
Sbjct: 137 LVGNKADLD 145
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 62.0 bits (151), Expect = 1e-12
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
+ LWDT G ++ Y ++A ++ F + + VL + EI + N K+ L
Sbjct: 57 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 116
Query: 60 CGNKSDL 66
G KSDL
Sbjct: 117 VGCKSDL 123
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 62.0 bits (151), Expect = 1e-12
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y ++ +L F+++N SF + ++ EI Y + AK L
Sbjct: 73 LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVL 132
Query: 60 CGNKSDL--EGTTPQVTEAD 77
G K DL +G+ VT+ +
Sbjct: 133 VGLKVDLRKDGSDD-VTKQE 151
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 61.3 bits (149), Expect = 2e-12
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + +++ FSL + ASF +V ++ E+ + N I L
Sbjct: 55 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 114
Query: 60 CGNKSDL 66
G K DL
Sbjct: 115 VGTKLDL 121
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 61.3 bits (149), Expect = 2e-12
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S + + E+ + N I L
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL 134
Query: 60 CGNKSDL 66
GNK DL
Sbjct: 135 VGNKKDL 141
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 61.4 bits (149), Expect = 3e-12
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
+ LWDT G ++ Y ++A +L F + + L + EI+ Y + ++ L
Sbjct: 77 LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLL 136
Query: 60 CGNKSDL 66
G K+DL
Sbjct: 137 IGCKTDL 143
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 60.6 bits (147), Expect = 3e-12
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 2 QLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFLC 60
++WDT G ER AS+ YY+ A+AA++V+ + SF + E+ A ++ I L
Sbjct: 55 EIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALV 114
Query: 61 GNKSDLEGTTP--QVTEADMENF 81
GNK D +V + E
Sbjct: 115 GNKIDXLQEGGERKVAREEGEKL 137
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 60.5 bits (147), Expect = 3e-12
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y+ A+ IL FSL + AS+ V + + E+ YA I L
Sbjct: 58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVL 117
Query: 60 CGNKSDL 66
G K DL
Sbjct: 118 VGTKLDL 124
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 60.9 bits (148), Expect = 3e-12
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FSL + ASF V ++ E+ + N I L
Sbjct: 80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 139
Query: 60 CGNKSDL 66
G K DL
Sbjct: 140 VGTKLDL 146
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 60.3 bits (147), Expect = 4e-12
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK---- 56
+++ DT ++ + Y +A A ++V+S+D+ SF S +L + +A+ +
Sbjct: 71 LRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP 129
Query: 57 IFLCGNKSDLE 67
L GNK D+
Sbjct: 130 ALLLGNKLDMA 140
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 60.5 bits (147), Expect = 6e-12
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + ++ FS+D+ S + + + E+ + N I L
Sbjct: 75 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIIL 134
Query: 60 CGNKSDL 66
NK DL
Sbjct: 135 VANKKDL 141
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 60.2 bits (146), Expect = 6e-12
Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 18/134 (13%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
+ L+DT G E + Y + ++ FS+ N ASF V + + E+ YA N L
Sbjct: 68 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLL 127
Query: 60 CGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQE-ACDKFEQM 118
G + DL + ++ + + + +++ +E + +
Sbjct: 128 IGTQIDLRDDPKTLARL------------NDMKEKPICVE---QGQKLAKEIGACCYVEC 172
Query: 119 SDKAKEELND-FKE 131
S ++ L F E
Sbjct: 173 SALTQKGLKTVFDE 186
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 60.2 bits (146), Expect = 7e-12
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ +WDT G + + +Y A +L F + + SF ++ ++ E+ + + I +
Sbjct: 84 LHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIV 143
Query: 60 CGNKSDLE 67
G K+DL
Sbjct: 144 VGCKTDLR 151
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 60.1 bits (146), Expect = 7e-12
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
+ LWDT G ++ Y ++A ++ F + + VL + EI + N K+ L
Sbjct: 78 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 137
Query: 60 CGNKSDL 66
G KSDL
Sbjct: 138 VGCKSDL 144
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 59.7 bits (145), Expect = 9e-12
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
+QL DT G + + Y + +L FS+ + +SF V + + EI + A I L
Sbjct: 70 LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIIL 129
Query: 60 CGNKSDLE 67
G +SDL
Sbjct: 130 VGTQSDLR 137
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 57.7 bits (140), Expect = 6e-11
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + + Y+ A+ +L FSL + AS+ VL + + E+ +A N I L
Sbjct: 59 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVL 118
Query: 60 CGNKSDL 66
G K DL
Sbjct: 119 VGTKLDL 125
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 56.1 bits (136), Expect = 1e-10
Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 12/96 (12%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAK---- 56
+ + + G + +A+A I VFSL++ SF +S+ ++ + +
Sbjct: 56 VLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLA 110
Query: 57 --IFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRF 90
+ ++ + V +A + +
Sbjct: 111 LALVGTQDRISAS-SPRVVGDARARALXADMKRCSY 145
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 52.4 bits (125), Expect = 9e-09
Identities = 12/70 (17%), Positives = 26/70 (37%)
Query: 99 QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
Q +Q + MS + E+N F R+ + + E +++ E+
Sbjct: 296 ATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEK 355
Query: 159 LKKCLAELKT 168
L++ L+
Sbjct: 356 LRQALSRFPV 365
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 52.3 bits (125), Expect = 1e-08
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFH-VLSQHLLEIVTYAENAKIFL 59
+ LWDT G+E + Y + ++ FSL + ASFH V ++ E+ + N I L
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL 264
Query: 60 CGNKSDL 66
G K DL
Sbjct: 265 VGTKLDL 271
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A
{Homo sapiens}
Length = 386
Score = 46.3 bits (109), Expect = 1e-06
Identities = 12/70 (17%), Positives = 22/70 (31%)
Query: 99 QEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNI 158
E + + + + E+N F +RR FK + +I +
Sbjct: 316 DEGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQ 375
Query: 159 LKKCLAELKT 168
L+K L
Sbjct: 376 LEKTLRMYDN 385
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 42.8 bits (101), Expect = 9e-06
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVF------SLDNAASFHVLSQHLLEIVTYAEN 54
L+ G + + + + V NA S + ++L E ++
Sbjct: 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDD 135
Query: 55 AKIFLCGNKSDLEGTTP--QVTEA 76
I + NK DL P V
Sbjct: 136 VPIVIQVNKRDLPDALPVEMVRAV 159
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 36.5 bits (84), Expect = 0.001
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 1 MQLWDTGGMERVASITS---SYYKFAEAAILVF--SLDNAASFHVLSQHLLEIVTYAENA 55
Q+WD G T ++ A I V D + L + + +
Sbjct: 71 FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDM 130
Query: 56 KIFLCGNKSDL 66
+ +K D
Sbjct: 131 NFEVFIHKVDG 141
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 36.0 bits (84), Expect = 0.002
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL- 59
Q+WD GG+ + YY +A I V + + L+ ++ E K L
Sbjct: 53 FQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILV 112
Query: 60 -CGNKSDLEG--TTPQVTEA 76
NK D+E T+ ++ +
Sbjct: 113 VFANKQDMEQAMTSSEMANS 132
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 35.6 bits (83), Expect = 0.003
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL- 59
+WD GG +++ + Y++ + I V ++ + + L+ ++ E L
Sbjct: 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 105
Query: 60 -CGNKSDLEG--TTPQVTEA 76
NK DL ++T+
Sbjct: 106 VFANKQDLPNAMNAAEITDK 125
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 35.7 bits (83), Expect = 0.003
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL- 59
+ +WD GG + YY A I V + S+ L ++ E L
Sbjct: 64 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL 123
Query: 60 -CGNKSDLEG--TTPQVTEA 76
NK D G + +V++
Sbjct: 124 VFANKQDQPGALSASEVSKE 143
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 35.3 bits (82), Expect = 0.004
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+ +WD GG + + S +Y++ + I V + + L ++ A L
Sbjct: 64 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL 123
Query: 61 --GNKSDLEG--TTPQVTEA 76
NK DL G + + EA
Sbjct: 124 IFANKQDLPGALSCNAIQEA 143
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 34.9 bits (81), Expect = 0.005
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL- 59
+WD GG E + S ++YY E I+V + V + L +++ + + K L
Sbjct: 62 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL 121
Query: 60 -CGNKSDLEG--TTPQVTEA 76
NK D++ T ++++
Sbjct: 122 IFANKQDVKECMTVAEISQF 141
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 34.6 bits (80), Expect = 0.008
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL- 59
+WD GG +++ + Y++ + I V ++ + L +++ E L
Sbjct: 75 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLL 134
Query: 60 -CGNKSDLEG--TTPQVTEA 76
NK D+ ++T+
Sbjct: 135 VFANKQDMPNAMPVSELTDK 154
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 34.1 bits (79), Expect = 0.009
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL- 59
++WD GG V Y+ +A I V + V L ++ E K L
Sbjct: 68 FEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLL 127
Query: 60 -CGNKSDLEG--TTPQVTEA 76
NK DL + ++ E
Sbjct: 128 IFANKQDLPDAASEAEIAEQ 147
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 34.6 bits (79), Expect = 0.011
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 1 MQLWDTGGMER-----VASITSSYYKFAEAAILVFSLDNAASF---HVLSQHLLEIVTYA 52
+ LWD GG + ++ + I VF +++ + ++ L ++ Y+
Sbjct: 54 LNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS 113
Query: 53 ENAKIFLCGNKSDL 66
+AKIF+ +K DL
Sbjct: 114 PDAKIFVLLHKMDL 127
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 33.8 bits (78), Expect = 0.011
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL- 59
+WD GG E + S ++YY E I+V + V + L +++ + + K L
Sbjct: 67 FLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL 126
Query: 60 -CGNKSDLEG--TTPQVTEA 76
NK D++ T ++++
Sbjct: 127 IFANKQDVKECMTVAEISQF 146
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.015
Identities = 11/79 (13%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 83 SRRSSRRFKPQEVVEPQEVVEAEQVQQEACD--KFEQMSDKAKEELNDFKERRVEAFKKN 140
++ +P+ + + +E + +A ++ +KAK++L ++ +R+ E +KN
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 141 LMELAELE---IKHAESQV 156
+ + + ++ +
Sbjct: 135 KINNRIADKAFYQQPDADI 153
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 33.3 bits (77), Expect = 0.021
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL- 59
++LWD GG R S+ Y + A + + + L ++ + I +
Sbjct: 69 IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL 128
Query: 60 -CGNKSDLEG--TTPQVTEA 76
GNK DL G ++ E
Sbjct: 129 VLGNKRDLPGALDEKELIEK 148
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 33.4 bits (76), Expect = 0.025
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 24 EAAILVF--SLDNAASFHVLSQHLLEIVTYAENAK--IFLCGNKSDLE 67
+ +L S +F + + + K I + K D
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 33.2 bits (76), Expect = 0.026
Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 16/160 (10%)
Query: 1 MQLWDTGGMERV-ASITSSYYKFAEAAILVF-SLDNAASFHVLSQHLLEIVTYAENAK-- 56
+ L D G E + + + A A + V S +++ L +++ + K
Sbjct: 56 LTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNS 115
Query: 57 --IFLCGNKSDLEG--TTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEAC 112
+ + NK D+ + + + +E + R ++ A+ ++
Sbjct: 116 PSLLIACNKQDIAMAKSAKLIQQQ-LEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKE 174
Query: 113 DKFEQMSDK-------AKEELNDFKERRVEAFKKNLMELA 145
+F Q+ K AK D ++ +K L ++A
Sbjct: 175 FEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes,
curvature membrane, structural genomics consortium;
1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Length = 243
Score = 33.2 bits (75), Expect = 0.028
Identities = 17/85 (20%), Positives = 34/85 (40%)
Query: 83 SRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLM 142
+R + + + + +AE+ Q+A FE+ + +EEL RRV +
Sbjct: 149 ARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFK 208
Query: 143 ELAELEIKHAESQVNILKKCLAELK 167
++ LE K + + K +
Sbjct: 209 NVSSLEAKFHKEIAVLCHKLYEVMT 233
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 32.6 bits (75), Expect = 0.030
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL- 59
+ +WD GG ++ SY++ + I V + F Q L E++ + + + +
Sbjct: 62 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL 121
Query: 60 -CGNKSDLEG--TTPQVTEA 76
NK DL ++ E
Sbjct: 122 IFANKQDLLTAAPASEIAEG 141
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 32.8 bits (75), Expect = 0.031
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAI--LVF---SLDNAASFHVLSQHLLEIVTYAENA 55
+ L D G ++ S Y K + L+F S + ++ L++I++ E++
Sbjct: 93 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS 152
Query: 56 K-----IFLCGNKSDLEG 68
I + NKS+L
Sbjct: 153 CENGIDILIACNKSELFT 170
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.036
Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 53/140 (37%)
Query: 25 AAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSR 84
A+ + D+ SF V + + ++ F G
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVL--------FFIG----------------------V 308
Query: 85 RSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQ----M---SDKAKEELNDFKERRVEAF 137
R + P + P + +++ + E M S+ +E++ + V
Sbjct: 309 RCYEAY-PNTSLPPSIL-------EDSLENNEGVPSPMLSISNLTQEQV----QDYVNKT 356
Query: 138 KKNLMELAELEIKHAESQVN 157
+L ++EI S VN
Sbjct: 357 NSHLPAGKQVEI----SLVN 372
Score = 30.4 bits (68), Expect = 0.28
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 40/139 (28%)
Query: 22 FAEAAILVF----SLDNAASFHVLSQHLLEIVTYAEN-AKIFLCGNKSDLEGTTPQVTEA 76
+VF ++ A L + ++ A N ++ ++ L+ +V +
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMI--AINPGRVAASFSQEALQYVVERVGKR 1836
Query: 77 DMENFWSRRSSRRFKPQEVVEPQEV---VEAEQV----QQEACDKFEQMSDKAKEELNDF 129
+VE V VE +Q A D LN
Sbjct: 1837 T---------------GWLVEI--VNYNVENQQYVAAGDLRALDT-------VTNVLNFI 1872
Query: 130 KERRVEAFKKNLMELAELE 148
K ++++ + L + LE
Sbjct: 1873 KLQKIDIIE--LQKSLSLE 1889
Score = 26.9 bits (59), Expect = 3.7
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 45/108 (41%)
Query: 24 EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTE---ADMEN 80
E +LV ASF + SQ + P+ TE AD E
Sbjct: 17 EHVLLV----PTASFFIASQL------------------QEQFNKILPEPTEGFAADDEP 54
Query: 81 FWSRRSSRRFKPQE-----------VVEPQEVVEAEQVQQEACDKFEQ 117
++ P E +VEP +V + +QV +FE
Sbjct: 55 -----TT----PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 32.9 bits (75), Expect = 0.039
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+WD GG +++ + Y++ + I V ++ + + L+ ++ E L
Sbjct: 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 270
Query: 61 --GNKSDLEG--TTPQVTEA 76
NK DL ++T+
Sbjct: 271 VFANKQDLPNAMNAAEITDK 290
>3gr3_A Nitroreductase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella
henselae str}
Length = 230
Score = 32.5 bits (74), Expect = 0.041
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 74 TEADMENFW----SRRSSRRFKPQEVVEPQEVVEA 104
+A ++ + SR+S R F Q V QE +
Sbjct: 3 ADAPID-IFQSILSRKSIRAFTDQPV--TQETIRE 34
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.044
Identities = 27/164 (16%), Positives = 47/164 (28%), Gaps = 48/164 (29%)
Query: 28 LVFSLDNAASFHVLSQHLLEIVTYAENAKIF---LCGNKSDL----EGTTPQVTE----- 75
+ L A + H+ H +T E + L DL T P+
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 76 -ADMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELN--DFKER 132
D W + + CDK + + + L ++++
Sbjct: 337 IRDGLATW----------------------DNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 133 --RVEAFKKN------LMEL--AELEIKHAESQVNIL-KKCLAE 165
R+ F + L+ L ++ VN L K L E
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Score = 32.9 bits (74), Expect = 0.047
Identities = 26/171 (15%), Positives = 55/171 (32%), Gaps = 38/171 (22%)
Query: 4 WDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHV--LSQHLLEIVTYAENAKIFLCG 61
++TG + Y++ + + VF +F + I++ E I
Sbjct: 9 FETGEHQ---------YQYKDI-LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII--- 55
Query: 62 NKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDK 121
+ + FW+ S K +E+V+ + V E + ++ +
Sbjct: 56 -------MSKDAVSGTLRLFWTLLS----KQEEMVQ-KFVEEVLR------INYKFLMSP 97
Query: 122 AKEELND--FKERRVEAFKKNLMELAELEIKHA---ESQVNILKKCLAELK 167
K E R + L ++ K+ L++ L EL+
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
>2wzv_A NFNB protein; nitroreductase, oxidoreductase; HET: MSE FMN; 1.75A
{Mycobacterium smegmatis} PDB: 2wzw_A*
Length = 235
Score = 32.3 bits (73), Expect = 0.050
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 10/44 (22%)
Query: 69 TTPQVTEADMENFW--------SRRSSRRFKPQEVVEPQEVVEA 104
+ P + + RR+ R F+P EV P+E + A
Sbjct: 3 SVPTLPTGPTVDLAQAAERLIKGRRAVRAFRPDEV--PEETMRA 44
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 32.0 bits (73), Expect = 0.054
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAI--LVF---SLDNAASFHVLSQHLLEIVTYAENA 55
+ L D G ++ S Y K + L+F S + ++ L++I++ E++
Sbjct: 57 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS 116
Query: 56 K-----IFLCGNKSDLEG 68
I + NKS+L
Sbjct: 117 CENGIDILIACNKSELFT 134
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 31.8 bits (72), Expect = 0.084
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+WD GG +++ + YY + I V + Q L I+ E +
Sbjct: 368 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL 427
Query: 61 --GNKSDLEG--TTPQVTEA 76
NK DL ++ E
Sbjct: 428 IFANKQDLPDAMKPHEIQEK 447
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 30.3 bits (69), Expect = 0.18
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAE----NAK 56
++D G R ++ YYK +A I V + V + L ++ + +
Sbjct: 69 FTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP 128
Query: 57 IFLCGNKSDLEG--TTPQVTEA 76
I NK DL T+ +V++
Sbjct: 129 ILFFANKMDLRDAVTSVKVSQL 150
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for
structural genomics, JCSG, protein structu initiative,
PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc
9343}
Length = 190
Score = 30.4 bits (69), Expect = 0.20
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
+E +RRS R + +++ P + + A
Sbjct: 8 LETIKARRSVRAYDRKQI--PADDLNA 32
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A
{Drosophila melanogaster} SCOP: a.238.1.1
Length = 244
Score = 30.6 bits (68), Expect = 0.20
Identities = 12/85 (14%), Positives = 30/85 (35%)
Query: 77 DMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEA 136
D + + + + + ++ + + +EA +E ++ + +EL + R+
Sbjct: 144 DYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILF 203
Query: 137 FKKNLMELAELEIKHAESQVNILKK 161
NL L E I +
Sbjct: 204 LVTNLQTLFATEQVFHNETAKIYSE 228
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 29.9 bits (68), Expect = 0.27
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIF 58
+D GG + + Y+ +VF +D A F L + AE +
Sbjct: 69 FTTFDLGGHIQARRLWKDYFPEVNG--IVFLVDAADPERFDEARVELDALFNIAELKDVP 126
Query: 59 LC--GNKSDLEG--TTPQVTEA 76
GNK D + ++ A
Sbjct: 127 FVILGNKIDAPNAVSEAELRSA 148
>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: FMN; 1.74A {Clostridium difficile 630}
Length = 219
Score = 30.2 bits (68), Expect = 0.29
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
+ + R+S R+FK Q+V E +
Sbjct: 5 QDTIFKRQSVRKFKNQDV--SDEDILK 29
>3e10_A Putative NADH oxidase; NP_348178.1, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: MSE FMN EPE; 1.40A {Clostridium
acetobutylicum}
Length = 168
Score = 29.5 bits (67), Expect = 0.34
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
M+ +RRS R +K ++V +E +E
Sbjct: 2 MDIINNRRSIRNYKGKKV--EKEKIEK 26
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 29.6 bits (66), Expect = 0.35
Identities = 9/56 (16%), Positives = 23/56 (41%)
Query: 105 EQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILK 160
+++ +EA K E + ++A+++ KE + + AE + +
Sbjct: 9 QEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRII 64
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for
structural genomics, protein structure initiative,
PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium
hafniense}
Length = 189
Score = 29.6 bits (67), Expect = 0.36
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
++ R S R FK + E+++A
Sbjct: 7 LKVIAERYSCRDFKNEMP--SDELLQA 31
>3e39_A Putative nitroreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio
desulfuricans subsp}
Length = 178
Score = 29.5 bits (67), Expect = 0.38
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
++ RRS RR+ + V E V
Sbjct: 9 LQAIRQRRSIRRYTDEAV--SDEAVRL 33
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 29.6 bits (67), Expect = 0.40
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENAKIF 58
+D GG + + +Y +VF +D A + L ++T A +
Sbjct: 71 FTTFDLGGHIQARRVWKNYLPAING--IVFLVDCADHERLLESKEELDSLMTDETIANVP 128
Query: 59 LC--GNKSDLEG--TTPQVTEA 76
+ GNK D + ++ E
Sbjct: 129 ILILGNKIDRPEAISEERLREM 150
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 29.6 bits (66), Expect = 0.49
Identities = 8/71 (11%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 1 MQLWDTGGMERV---ASITSSYYKFAEAAILVFSLDNA--ASFHVLSQHLLEIVTYAENA 55
+ + + G + + +K A + V + + L+ + +
Sbjct: 48 LAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSI 107
Query: 56 KIFLCGNKSDL 66
I + +K D
Sbjct: 108 NIEVLIHKVDG 118
>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur
genomics, joint center for structural genomics, JCSG;
HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 175
Score = 29.1 bits (66), Expect = 0.50
Identities = 6/27 (22%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
++N + R+S R + + V +E ++
Sbjct: 13 LDNIFERKSVRTYLNKGV--EKEKIDL 37
>3m5k_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structural
genomics, joint center for structural genomics; HET: MSE
FMN; 1.86A {Parabacteroides distasonis}
Length = 172
Score = 29.1 bits (66), Expect = 0.51
Identities = 7/27 (25%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
+E +R+S R++K + V +E ++
Sbjct: 9 LETILNRKSVRKYKDRPV--EKEKIDK 33
>3gfa_A Putative nitroreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile
630}
Length = 198
Score = 29.3 bits (66), Expect = 0.53
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 83 SRRSSRRFKPQEVVEPQEVVEA 104
RRS R++K Q + E +E
Sbjct: 9 KRRSIRKYKNQSI--SHETIEK 28
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI,
protein struc initiative, midwest center for structural
genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens
str} SCOP: d.90.1.1
Length = 200
Score = 28.9 bits (65), Expect = 0.61
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 69 TTPQVTEAD-MENFWSRRSSRRFKPQEVVEPQEVVEA 104
+ + +E F R S R F + P+E +
Sbjct: 4 SNNRQSEYPVDPLFLDRWSPRAFDGSPM--PKEHLLT 38
>4dn2_A Nitroreductase; structural genomics, protein structure initiative,
NEW YORK structural genomix research consortium, nysgrc;
HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A*
Length = 208
Score = 28.8 bits (65), Expect = 0.70
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 83 SRRSSRRFKPQEVVEPQEVVEA 104
+RRS R+F + V E + A
Sbjct: 31 TRRSVRKFSDRPV--EPEKLRA 50
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 28.7 bits (64), Expect = 0.73
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 103 EAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKK 161
E + + QEA K E + +A+E+ + R A + ++ AES +L
Sbjct: 14 EIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQ----YRAALRRAESAGELLVA 68
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 28.8 bits (64), Expect = 0.81
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 24 EAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWS 83
A++V +D F L + + N K+ L GNK+DL V +++ W
Sbjct: 69 SDALVVKIVD---IFDFNGSWLPGLHRFVGNNKVLLVGNKADL--IPKSVKHDKVKH-WM 122
Query: 84 RRSSRR--FKPQEVV 96
R S+++ KP++V
Sbjct: 123 RYSAKQLGLKPEDVF 137
>3h4o_A Nitroreductase family protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630}
PDB: 3koq_A*
Length = 191
Score = 28.4 bits (64), Expect = 0.82
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
+E R S R ++ ++V +E +E
Sbjct: 23 VELAKKRYSCRNYQDRKV--EKEKLEK 47
>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein,
oxidoreduction, nitrocompound, oxidoreductase; HET: FMN;
1.70A {Escherichia coli} SCOP: d.90.1.1
Length = 240
Score = 28.8 bits (65), Expect = 0.82
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
+E RS R F + + + EA
Sbjct: 5 IELICGHRSIRHFTDEPI--SEAQREA 29
>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: FMN UNL; 1.70A {Porphyromonas
gingivalis W83}
Length = 198
Score = 28.4 bits (64), Expect = 0.83
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 70 TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEA 104
PQ + F +RRS R+F + V +E + A
Sbjct: 23 IPQDFRLIEDFFRTRRSVRKFIDRPV--EEEKLMA 55
>3gb5_A IYD-1, iodotyrosine dehalogenase 1; iodide salvage, flavoprotein,
FMN, membrane, NADP, oxidoreductase, transmembrane; HET:
FMN; 2.00A {Mus musculus} PDB: 3gfd_A* 3gh8_A* 3tnz_A*
3to0_A*
Length = 259
Score = 28.6 bits (64), Expect = 0.86
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 83 SRRSSRRFKPQEVVEPQEVVE 103
RRS R + V P EV+E
Sbjct: 63 KRRSVRFISSEHV--PMEVIE 81
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 28.6 bits (65), Expect = 0.88
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 8 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE 67
G+ER S A +++ ++D A + EI ++ + L NK DL
Sbjct: 293 GVER------SRQAANTADLVLLTIDAATG---WTTGDQEIYEQVKHRPLILVMNKIDLV 343
Query: 68 GTTPQVTEADMENF 81
+ EN
Sbjct: 344 EKQLITSLEYPENI 357
>3eof_A Putative oxidoreductase; YP_213212.1, structural genomics, J center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: FMN; 1.99A {Bacteroides fragilis nctc 9343}
Length = 248
Score = 28.5 bits (64), Expect = 0.89
Identities = 4/27 (14%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
M+ +RR+ R+++ +++ +++
Sbjct: 3 MDTVKNRRTIRKYQQKDI--TPDLLND 27
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 28.7 bits (65), Expect = 0.95
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 8 GMERVASITSSYYKFAEAAILVFSLD-NAASFHVLSQHLLEIVTYAENAKIFLCGNKSDL 66
G+ R S K AEA ++++ LD + E+ AK NK D
Sbjct: 302 GIRR------SRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDR 355
Query: 67 EGTTPQVTEADME 79
+ A +
Sbjct: 356 AANADALIRAIAD 368
>2r01_A Nitroreductase family protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN; 1.15A {Chlorobium tepidum tls}
Length = 210
Score = 28.5 bits (64), Expect = 0.97
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 78 MENFWSRRSSRRFKPQEVVEP---QEVVEA 104
E RS RRF V +++VE
Sbjct: 16 RELVARSRSIRRFDEHVAVNDATLRDLVEL 45
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 28.6 bits (64), Expect = 1.0
Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 28/137 (20%)
Query: 45 LLEIVTYAENAKIFLCGNKSDLEGTTPQVTEAD---MENFWSRRSSRRFKPQEVVEPQEV 101
E A+ A F+ K + E V E + + V P+ +
Sbjct: 453 FTEGRIAAKAAVRFILEQKPNPEIDDAVVEELKKKAYAPMERFMQYKDLSTADDVNPEYI 512
Query: 102 VEAEQVQ------QEACDKF-------EQMSDKAKEELNDFKER-----------RVEAF 137
+ + + E E+M +A E L KE + A+
Sbjct: 513 LPWQGLVRLQKIMDEYAAGIATIYKTNEKMLQRALELLAFLKEDLEKLAARDLHELMRAW 572
Query: 138 K-KNLMELAELEIKHAE 153
+ + + AE ++H
Sbjct: 573 ELVHRVWTAEAHVRHML 589
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase;
HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1
Length = 255
Score = 28.2 bits (63), Expect = 1.1
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
+++ RS R + + V QE ++
Sbjct: 5 IKSLTDHRSIRSYTDEPV--AQEQLDQ 29
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 27.9 bits (63), Expect = 1.2
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 8 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLE--IVTYAENAKIFLCGNKSD 65
G+ER ++ + +A ++F +D + V + I I + NK+D
Sbjct: 73 GIER------AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126
Query: 66 LEGTTPQVTEAD 77
+ G T ++E +
Sbjct: 127 ITGETLGMSEVN 138
>3g14_A Nitroreductase family protein; structural genom joint center for
structural genomics, JCSG, protein structu initiative,
PSI-2, oxidoreductase; HET: MSE; 1.75A {Clostridium
novyi}
Length = 193
Score = 28.0 bits (63), Expect = 1.4
Identities = 3/22 (13%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 83 SRRSSRRFKPQEVVEPQEVVEA 104
R+S ++F+ + ++ +
Sbjct: 10 KRKSIKKFEQTAI--DRDKLLK 29
>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN;
1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A*
Length = 240
Score = 27.7 bits (62), Expect = 1.5
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
+E + RS R+F + E +
Sbjct: 5 IETILAHRSIRKFTAVPI--TDEQRQT 29
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich,
oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis}
Length = 249
Score = 27.7 bits (62), Expect = 1.6
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
+E + RS R F Q + E ++
Sbjct: 5 IETILNHRSIRSFTDQLL--TAEEIDT 29
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 27.9 bits (63), Expect = 1.6
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 8 GMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSDLE 67
G+ER + + +A I++F LD ++ L + +I+ +N + + NK D+
Sbjct: 313 GIER------TLQEIEKADIVLFVLDASSP---LDEEDRKILERIKNKRYLVVINKVDVV 363
Query: 68 GTTPQ 72
+
Sbjct: 364 EKINE 368
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils,
endocytosis/exocytosis, protein complex,
endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A
2rnd_A
Length = 251
Score = 27.5 bits (60), Expect = 2.1
Identities = 16/85 (18%), Positives = 33/85 (38%)
Query: 83 SRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLM 142
+R + + + ++ +AE+ +A FE+M+ +EEL RV +
Sbjct: 163 ARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQ 222
Query: 143 ELAELEIKHAESQVNILKKCLAELK 167
+A LE + + + L
Sbjct: 223 SIAGLEENFHKEMSKLNQNLNDVLV 247
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 27.3 bits (61), Expect = 2.3
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 113 DKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAE 153
DKFE K E R++ ++ LA E H
Sbjct: 164 DKFETAYKKLSELKKTINN-RIKEYRD---ILARTEGGHHH 200
>2pnw_A AGR_C_15P, membrane-bound lytic murein transglycosylase; structural
genomics, PSI-2, protein structure initiative; 1.90A
{Agrobacterium tumefaciens str} SCOP: b.52.1.4
Length = 380
Score = 27.5 bits (60), Expect = 2.8
Identities = 9/77 (11%), Positives = 19/77 (24%), Gaps = 6/77 (7%)
Query: 64 SDLEGTTPQVTEADMENFWS--RRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDK 121
DL G + D + + + + + E+
Sbjct: 15 RDLPG----WGQDDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVN 70
Query: 122 AKEELNDFKERRVEAFK 138
+ E+ F E F+
Sbjct: 71 SPEQARQFFETNSVPFR 87
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR
adaptor; 1.91A {Homo sapiens}
Length = 237
Score = 27.1 bits (59), Expect = 3.0
Identities = 11/85 (12%), Positives = 28/85 (32%)
Query: 83 SRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLM 142
+R + + + + +AE+ +A FE ++ + EEL R+ +
Sbjct: 144 ARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQ 203
Query: 143 ELAELEIKHAESQVNILKKCLAELK 167
++ L + +
Sbjct: 204 NISNLRDVFYREMSKLNHNLYEVMS 228
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn
oxidoreductase, oxidoreductase-oxidoreductase inhibitor
COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} PDB:
2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A*
3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A*
3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Length = 422
Score = 27.2 bits (60), Expect = 3.3
Identities = 11/58 (18%), Positives = 21/58 (36%)
Query: 86 SSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLME 143
S Q +P++V +Q+ A + +Q K + R+E K +
Sbjct: 37 GSIMLPSQHTRKPEDVRTKDQLFPLAKEFLDQYYSSIKRFGSKAHMDRLEEVNKEIES 94
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 27.3 bits (60), Expect = 3.4
Identities = 7/57 (12%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 99 QEVVEAEQVQQEACDKFEQM-SDKAKEELNDFKERRVEAFK-KNLMELAELEIKHAE 153
++ + E + D K D E + ++ + + L ++H
Sbjct: 555 TYYNTSKALLDTGFWLMEMLEEDSLKLAARDLHEL-LRCWENYHRLWTVRLHMQHIA 610
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent
nitroreductase-like fold, structural genomics; HET: MSE
FMN; 1.70A {Streptococcus mutans}
Length = 206
Score = 26.5 bits (59), Expect = 4.1
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 83 SRRSSRRFKPQEVVEPQEVVEA 104
R S RRF P V+ P ++++
Sbjct: 12 GRVSVRRFDPDAVL-PNDLIKD 32
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus}
SCOP: b.60.1.1
Length = 159
Score = 26.1 bits (57), Expect = 4.5
Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 13/93 (13%)
Query: 15 ITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLCGNKSD-------LE 67
+ K E + + D F + E+ ++L D
Sbjct: 64 FPMVFDKTEEDGVYSLNYDGYNVFRISE------FENDEHIILYLVNFDKDRPFQLFEFY 117
Query: 68 GTTPQVTEADMENFWSRRSSRRFKPQEVVEPQE 100
P V+ E F R + +++ +
Sbjct: 118 AREPDVSPEIKEEFVKIVQKRGIVKENIIDLTK 150
>2kz9_A V-type proton ATPase subunit E; V-ATPase, proton transport; NMR
{Saccharomyces cerevisiae}
Length = 69
Score = 24.8 bits (54), Expect = 5.0
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 107 VQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHA 152
+++EA +K +++ KA +E K V N+ + ++K A
Sbjct: 24 IRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKA 69
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase,
thermophIle; HET: FMN; 1.59A {Thermus thermophilus}
SCOP: d.90.1.1
Length = 205
Score = 26.1 bits (58), Expect = 6.2
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 83 SRRSSRRFKPQEVVEPQEVVEA 104
RRS RR++ V P+ ++
Sbjct: 16 KRRSIRRYRKDPV--PEGLLRE 35
>3hj9_A Oxidoreductase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2; HET:
MSE FMN; 2.00A {Ralstonia eutropha}
Length = 223
Score = 26.0 bits (57), Expect = 6.2
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 78 MENFWSRRSSRRFKPQEV 95
M W R+S+R F Q +
Sbjct: 43 MGTLWLRKSTREFDQQPL 60
>3hoi_A FMN-dependent nitroreductase BF3017; YP_212631.1, structural
genomics, joint center for S genomics, JCSG; HET: MSE
FMN FLC; 1.55A {Bacteroides fragilis nctc 9343}
Length = 193
Score = 25.9 bits (57), Expect = 6.9
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 78 MENFWSRRSSRRFKPQEV 95
M+ R S+R + + +
Sbjct: 20 MKALSERHSTREYASKAL 37
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 26.3 bits (57), Expect = 6.9
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 93 QEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHA 152
E Q ++A+ + E + E++ + EL + ++E +LA +E K
Sbjct: 737 GEGSVLQAKLKAQALAIETEAELERVKKVREMEL-IYARAQLELEVSKAQQLANVEAKKF 795
Query: 153 ESQVNILKK 161
+ L
Sbjct: 796 KEMTEALGP 804
>2i7h_A Nitroreductase-like family protein; alpha-beta, structural
genomics, PSI-2, protein structure in midwest center for
structural genomics, MCSG; HET: MSE FMN; 2.30A {Bacillus
cereus}
Length = 189
Score = 25.7 bits (57), Expect = 7.3
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 83 SRRSSRRFKPQEVVEPQEVVE 103
RRS R F + V ++++
Sbjct: 16 ERRSVRTFTDKAV--EKDLLI 34
>3bm1_A Protein YDJA, nitroreductase; oxidoreductase; HET: FMN; 2.00A
{Escherichia coli} PDB: 3bm2_A
Length = 183
Score = 25.3 bits (56), Expect = 8.1
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
+E +RRS+ R E ++
Sbjct: 4 LELLINRRSASRLAEPAP--TGEQLQN 28
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein
structure initiative, midwest center structural
genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc
14579} SCOP: d.90.1.1
Length = 200
Score = 25.6 bits (56), Expect = 8.1
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 83 SRRSSRRFKPQEVVEPQEVVE 103
+RRS R+ + + + + E
Sbjct: 14 NRRSIRKVTKNDAITKERIEE 34
>2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE FMN; 2.11A {Streptococcus pyogenes serotype M1}
Length = 224
Score = 25.6 bits (56), Expect = 8.3
Identities = 4/26 (15%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 79 ENFWSRRSSRRFKPQEVVEPQEVVEA 104
+ R + R +K +++ E +
Sbjct: 14 QALHFRTAVRVYKEEKI--SDEDLAL 37
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 25.7 bits (55), Expect = 9.0
Identities = 8/39 (20%), Positives = 23/39 (58%)
Query: 105 EQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLME 143
+++ + ++ +KAK++L ++ +R+ E +KN +
Sbjct: 114 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.127 0.350
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,448,582
Number of extensions: 134076
Number of successful extensions: 712
Number of sequences better than 10.0: 1
Number of HSP's gapped: 614
Number of HSP's successfully gapped: 218
Length of query: 170
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 83
Effective length of database: 4,272,666
Effective search space: 354631278
Effective search space used: 354631278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (25.3 bits)