RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17235
(170 letters)
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 47.4 bits (112), Expect = 8e-08
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A +LV+ + N SF + + I +A + + +
Sbjct: 57 LQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMI 116
Query: 60 CGNKSDLEGTTPQVTEADMENFWSR 84
GNK D+ E +
Sbjct: 117 LGNKCDVNDKRQVSKERGEKLALDY 141
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 46.8 bits (110), Expect = 1e-07
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
Q+WDT G ER ITS+YY+ A A+LV+ + ++ + + L E+ +A N I L
Sbjct: 55 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 114
Query: 60 CGNKSDLEGTTPQVTEADMENFW 82
GNKSDL T+
Sbjct: 115 VGNKSDLRHLRAVPTDEARAFAE 137
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 45.5 bits (107), Expect = 3e-07
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+Q+WDT G ER +IT++YY+ A ILV+ + + +F ++ + A++ L
Sbjct: 53 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLL 112
Query: 60 CGNKSDL 66
GNKSD+
Sbjct: 113 VGNKSDM 119
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 44.9 bits (105), Expect = 5e-07
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER +IT++YY+ A IL++ + N SF+ + +I TY+ +NA++ L
Sbjct: 56 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 115
Query: 60 CGNKSDLEGTTPQVTEADMENFWSR 84
GNK D+E +E +
Sbjct: 116 VGNKCDMEDERVVSSERGRQLADHL 140
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 45.2 bits (106), Expect = 5e-07
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIV-TYAENAKIFL 59
+Q+WDT G ER +ITSSYY+ + I+V+ + + SF+ + L EI L
Sbjct: 57 LQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 116
Query: 60 CGNKSDLEGTTPQVTEADMENFW 82
GNK DL+ + E
Sbjct: 117 VGNKCDLKDKRVVEYDVAKEFAD 139
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 43.3 bits (101), Expect = 2e-06
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+ +WDT G ER ++T SYY+ A+ ILV+ + +F L L E+ TY I
Sbjct: 58 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM 117
Query: 61 GNKSDLEGTTPQVTEADMENFWSRR 85
+ ++ +V + F +
Sbjct: 118 LVGNKIDKENREVDRNEGLKFARKH 142
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 42.9 bits (100), Expect = 3e-06
Identities = 26/81 (32%), Positives = 39/81 (48%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+Q+WDT G ER S+T +YY+ A A +L++ + N ASF + L EI YA++ +
Sbjct: 58 LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 117
Query: 61 GNKSDLEGTTPQVTEADMENF 81
V D E
Sbjct: 118 LGNKVDSAHERVVKREDGEKL 138
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 41.8 bits (97), Expect = 8e-06
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+Q+WDT G ER ++T SYY+ A A++V+ + ++++ LS L + N I L
Sbjct: 55 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 114
Query: 60 CGNKSDLEGTTPQVTE 75
GNK+DLE E
Sbjct: 115 IGNKADLEAQRDVTYE 130
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 41.5 bits (96), Expect = 8e-06
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-ENAKIFL 59
+QLWDT G ER S+ SY + + AA++V+ + N SF ++ + ++ T + I L
Sbjct: 51 LQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML 110
Query: 60 CGNKSDLEGTTPQVTEADME 79
GNK+DL E
Sbjct: 111 VGNKTDLADKRQVSIEEGER 130
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 41.3 bits (96), Expect = 1e-05
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKI-FL 59
+Q+WDT G ER SIT SYY+ A A IL + + SF L + L EI YA N I L
Sbjct: 56 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 115
Query: 60 CGNKSDLEGTTPQVTEADMENFWSR 84
GNK DL + E ++
Sbjct: 116 VGNKIDLAERREVSQQRAEEFSEAQ 140
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 40.7 bits (94), Expect = 2e-05
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVT-YAENAKIFL 59
+Q+WDT G ER S+T SYY+ A A+LV+ + + +++ L+ L + ++N I L
Sbjct: 56 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 115
Query: 60 CGN 62
CGN
Sbjct: 116 CGN 118
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 217
Score = 38.2 bits (88), Expect = 2e-04
Identities = 13/91 (14%), Positives = 32/91 (35%)
Query: 77 DMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEA 136
D + + + + + ++ + + +EA +E ++ + +EL + R+
Sbjct: 119 DYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILF 178
Query: 137 FKKNLMELAELEIKHAESQVNILKKCLAELK 167
NL L E I + A +
Sbjct: 179 LVTNLQTLFATEQVFHNETAKIYSELEAIVD 209
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 37.2 bits (85), Expect = 4e-04
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTY--AENAKIF 58
+QLWDT G ER S+T+++++ A +L+F L + SF + + ++ EN I
Sbjct: 66 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125
Query: 59 LCGNKSDL 66
L GNK+DL
Sbjct: 126 LIGNKADL 133
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 35.3 bits (80), Expect = 0.001
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIF 58
+++ DT G E+ AS+ Y K + ILV+SL N SF + +I+ E +
Sbjct: 53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI 112
Query: 59 LCGNKSDLEGTTPQVTE 75
L GNK DLE +
Sbjct: 113 LVGNKVDLESEREVSSS 129
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo
sapiens) [TaxId: 9606]}
Length = 200
Score = 33.2 bits (75), Expect = 0.008
Identities = 11/85 (12%), Positives = 31/85 (36%)
Query: 77 DMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEA 136
+ + + + P++ + A+ Q DK+E++ +L +E +++
Sbjct: 116 EYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKV 175
Query: 137 FKKNLMELAELEIKHAESQVNILKK 161
K L+ + L++
Sbjct: 176 MHKQLLLFHNAVSAYFAGNQKQLEQ 200
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 33.0 bits (74), Expect = 0.008
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+ +WDT G ER ++ YY+ + AILV+ + + SF + + E+ N
Sbjct: 54 LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCI 113
Query: 61 GNKSDLEGTTPQVTEADMENF 81
V+ + E++
Sbjct: 114 VGNKIDLEKERHVSIQEAESY 134
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 32.7 bits (73), Expect = 0.011
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G E + Y + +++ FSL + ASF +V ++ E+ + N I L
Sbjct: 55 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 114
Query: 60 CGNKSDLEGTTPQVTEADMENFW 82
G K DL + + +
Sbjct: 115 VGTKLDLRDDKDTIEKLKEKKLT 137
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 32.7 bits (73), Expect = 0.011
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA-----ENA 55
MQ+WDT G ER S+ ++Y+ A+ +LV+ + NA+SF + E + +A E
Sbjct: 54 MQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETF 113
Query: 56 KIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRF 90
+ GNK D E + V+E +
Sbjct: 114 PFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 148
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 31.2 bits (69), Expect = 0.042
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAEN-AKIFL 59
++WDT G ER AS+ YY+ A+AA++V+ + SF + E+ A I L
Sbjct: 54 FEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIAL 113
Query: 60 CGNKSDLEGTTPQVTEADMENFW 82
GNK D+ + A E
Sbjct: 114 VGNKIDMLQEGGERKVAREEGEK 136
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 30.0 bits (66), Expect = 0.095
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ LWDT G ++ Y ++A ++ F + + VL + EI + N K+ L
Sbjct: 52 LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 111
Query: 60 CGNKSDLEGTTPQVTEADMENFWSR 84
G KSDL T T ++ N
Sbjct: 112 VGCKSDLR--TDVSTLVELSNHRQT 134
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 29.6 bits (65), Expect = 0.16
Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 6/125 (4%)
Query: 4 WDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-----HVLSQHLLEIVTYAENAKIF 58
G + + A A + V L Q L++ + + +
Sbjct: 53 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLL 112
Query: 59 LCGNKSDLEGT-TPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQ 117
+ NK D+ + ++ + +E + R ++ A+ ++ +F Q
Sbjct: 113 IACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQ 172
Query: 118 MSDKA 122
+ K
Sbjct: 173 LPLKV 177
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 29.2 bits (64), Expect = 0.21
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 2/135 (1%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASF-HVLSQHLLEIVTYAENAKIFL 59
+ L+DT G E + Y + ++ FS+ + +SF +V + + EI + L
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL 112
Query: 60 CGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVVEAEQVQQEACDK-FEQM 118
G + DL + + K ++ + VE + Q+ F++
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
Query: 119 SDKAKEELNDFKERR 133
A E K RR
Sbjct: 173 ILAALEPPEPKKSRR 187
>d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens
[TaxId: 76935]}
Length = 300
Score = 29.0 bits (64), Expect = 0.28
Identities = 10/80 (12%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Query: 43 QHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQEVVEPQEVV 102
+ + E V A + I++ + L P + + + ++F+ S + V +
Sbjct: 77 EKVKEAVEAAIDLDIYVIIDWHILSDNDPNIYKEEAKDFF-DEMSELYGDYPNVIYEIAN 135
Query: 103 EAEQVQQEACDKFEQMSDKA 122
E ++ + +++
Sbjct: 136 EPNGSDVTWGNQIKPYAEEV 155
>d1bkja_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase)
{Vibrio harveyi [TaxId: 669]}
Length = 239
Score = 27.4 bits (60), Expect = 0.81
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
+E + RS R+F + E +
Sbjct: 4 IETILAHRSIRKFTAVPI--TDEQRQT 28
>d1noxa_ d.90.1.1 (A:) NADH oxidase {Thermus thermophilus, HB8
[TaxId: 274]}
Length = 200
Score = 26.8 bits (58), Expect = 1.0
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 83 SRRSSRRFKPQEVVEPQEVVEA 104
RRS RR++ V P+ ++
Sbjct: 11 KRRSIRRYRKDPV--PEGLLRE 30
>d1f5va_ d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroreductase
{Escherichia coli, major form, NfsA [TaxId: 562]}
Length = 240
Score = 27.1 bits (59), Expect = 1.0
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
+E RS R F + + + EA
Sbjct: 5 IELICGHRSIRHFTDEPI--SEAQREA 29
>d1vkwa_ d.90.1.2 (A:) Putative nitroreductase TM1586 {Thermotoga
maritima [TaxId: 2336]}
Length = 217
Score = 26.7 bits (59), Expect = 1.3
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVE 103
E +R S R F +++ P+ V +
Sbjct: 15 FEAIENRHSVRDFLERKM--PERVKD 38
>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD
{Bacillus subtilis [TaxId: 1423]}
Length = 249
Score = 26.7 bits (58), Expect = 1.4
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
+++ RS R + + V QE ++
Sbjct: 5 IKSLTDHRSIRSYTDEPV--AQEQLDQ 29
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 26.5 bits (58), Expect = 1.5
Identities = 21/133 (15%), Positives = 35/133 (26%), Gaps = 5/133 (3%)
Query: 43 QHLLEIVTYAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRSSRRFKPQ-EVVEPQEV 101
+ L E + I C N E Q + F R +R P+ +
Sbjct: 142 EKLWEAMLSEHKNNINNCKNIPQEELQITQWIKEWHGEFLLERDNRAKLPKSKCKNNALY 201
Query: 102 VEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQV----N 157
E+ + C K+ ++K E + + L
Sbjct: 202 EACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVSL 261
Query: 158 ILKKCLAELKTSD 170
+L C AE
Sbjct: 262 LLNNCDAEYSKYC 274
>d1vfra_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase)
{Vibrio fischeri [TaxId: 668]}
Length = 217
Score = 26.5 bits (57), Expect = 1.7
Identities = 6/27 (22%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
+ + +R +S+++ P + V QE +
Sbjct: 5 IHDLENRYTSKKYDPSKKV-SQEDLAV 30
>d2frea1 d.90.1.1 (A:1-200) NAD(P)H-flavin oxidoreductase Atu0013
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 200
Score = 26.1 bits (56), Expect = 1.8
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 78 MENFWSRRSSRRFKPQEVVEPQEVVEA 104
F R S R F + P+E +
Sbjct: 14 DPLFLDRWSPRAFDGSPM--PKEHLLT 38
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 26.2 bits (57), Expect = 1.8
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 97 EPQEVVEAEQVQQEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQV 156
+ E + + K Q LN + ++ A + L + + ++Q+
Sbjct: 151 NDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPL-------LGYMQAQI 203
Query: 157 NILKKCLAEL 166
+ K L
Sbjct: 204 SFFKMGSENL 213
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 26.1 bits (57), Expect = 2.3
Identities = 9/62 (14%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 109 QEACDKFEQMSDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKKCLAELKT 168
+AC ++Q + K++ + + ++ + ++ ++ + +ILK+ L K
Sbjct: 218 HDACKSYDQWITRKKKQWDVLSTK-----FSSVKKTQKIGTENIATAYDILKQELNGFKE 272
Query: 169 SD 170
+
Sbjct: 273 AT 274
>d2fi2a1 a.28.3.2 (A:37-128) Zinc finger protein 42 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 92
Score = 24.7 bits (54), Expect = 3.1
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 83 SRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEEL 126
+R R F +E PQE + +E C ++ + ++KE++
Sbjct: 7 ARLRFRCFHYEEATGPQEAL---AQLRELCRQWLRPEVRSKEQM 47
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 25.4 bits (54), Expect = 3.1
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFLC 60
+WDT G E+ + YY A+ AI++F + + ++ + ++V EN I LC
Sbjct: 54 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 113
Query: 61 GNKSDLE 67
GNK D++
Sbjct: 114 GNKVDIK 120
>d1ykia1 d.90.1.1 (A:2-217) Oxygen-insensitive NAD(P)H
nitroreductase {Escherichia coli, minor form, NfnB
[TaxId: 562]}
Length = 216
Score = 25.7 bits (55), Expect = 3.1
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 83 SRRSSRRFKPQEVVEPQEVVEA 104
R S++ F + + E E
Sbjct: 8 KRHSTKAFDASKKL-TPEQAEQ 28
>d1y7qa1 a.28.3.2 (A:37-132) Zinc finger protein 174 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 24.7 bits (54), Expect = 3.4
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 83 SRRSSRRFKPQEVVEPQEVVEAEQVQQEACDKFEQMSDKAKEEL 126
R+S RRF QEV PQE + ++ C ++ Q KE++
Sbjct: 9 CRQSFRRFCYQEVSGPQEAL---SQLRQLCRQWLQPELHTKEQI 49
>d1abra_ d.165.1.1 (A:) Abrin A-chain {Abrus precatorius [TaxId:
3816]}
Length = 251
Score = 25.3 bits (55), Expect = 3.7
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 33 DNAASFHVLSQHLLEIVT--YAENAKIFLCGNKSDLEGTTPQVTEADMENFWSRRS 86
+ A + V+ Q + E Y N + + P +EN W S
Sbjct: 150 EKARTLIVIIQMVAEAARFRYISN---RVRVSIQTGTAFQPDAAMISLENNWDNLS 202
>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein
TCTP (histamine-releasing factor) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 172
Score = 25.1 bits (55), Expect = 3.9
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 94 EVVEPQEVVEAEQVQQEACDKFEQMSD------KAKEELNDFKERRVEAFKKNLME 143
V+ ++V +Q+ + K K +L + + RV+ F E
Sbjct: 65 TVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 25.0 bits (53), Expect = 4.0
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 4 WDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYA--ENAKIFLCG 61
G S+ YY+ A + V+ + N ASFH L + E + + L G
Sbjct: 57 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG 116
Query: 62 NKSDLEGTTPQVTE 75
NK DL T+
Sbjct: 117 NKCDLRSAIQVPTD 130
>d2b67a1 d.90.1.1 (A:1-201) Hypothetical oxidoreductase SP0622
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 201
Score = 25.0 bits (53), Expect = 5.0
Identities = 4/22 (18%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 83 SRRSSRRFKPQEVVEPQEVVEA 104
R +++ F + V + V
Sbjct: 9 KRHATKHFTDKLV--DPKDVRT 28
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 24.2 bits (51), Expect = 7.6
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 1 MQLWDTGGMERVASITSSYYKFAEAAILVFSLDNAASFHVLSQHLLEIVTYAENAKIFL- 59
+ +WD GG + YY A I V + S+ L ++ E L
Sbjct: 63 LNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL 122
Query: 60 -CGNKSDLEG 68
NK D G
Sbjct: 123 VFANKQDQPG 132
>d1bev1_ b.121.4.1 (1:) Bovine enterovirus coat proteins {Bovine
enterovirus, VG-5-27 [TaxId: 12064]}
Length = 268
Score = 24.3 bits (53), Expect = 7.9
Identities = 4/12 (33%), Positives = 8/12 (66%)
Query: 73 VTEADMENFWSR 84
+ E +E+F+ R
Sbjct: 53 IHETSVESFFGR 64
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
[TaxId: 9606]}
Length = 222
Score = 24.1 bits (52), Expect = 8.4
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 119 SDKAKEELNDFKERRVEAFKKNLMELAELEIKHAESQVNILKK 161
D A E ++ +E + E+ L + +E + + +K
Sbjct: 17 HDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQK 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.127 0.350
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 581,453
Number of extensions: 24799
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 66
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 50 (23.6 bits)