Query psy17239
Match_columns 115
No_of_seqs 34 out of 36
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 16:52:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4403|consensus 100.0 1.1E-39 2.4E-44 282.2 10.6 104 3-115 209-312 (575)
2 PRK10920 putative uroporphyrin 96.9 0.021 4.6E-07 49.1 11.8 77 9-85 38-124 (390)
3 PF10828 DUF2570: Protein of u 96.5 0.15 3.2E-06 36.2 12.3 67 11-84 7-73 (110)
4 PRK06975 bifunctional uroporph 95.7 0.2 4.4E-06 45.0 11.6 77 9-85 325-410 (656)
5 PF14584 DUF4446: Protein of u 95.3 0.24 5.2E-06 37.6 9.3 73 12-85 6-78 (151)
6 PF04375 HemX: HemX; InterPro 94.7 0.78 1.7E-05 38.5 11.6 40 14-53 36-77 (372)
7 PF06210 DUF1003: Protein of u 94.0 1.1 2.5E-05 32.3 9.7 67 12-78 39-105 (108)
8 TIGR03495 phage_LysB phage lys 93.9 2.1 4.5E-05 32.4 12.1 36 12-47 2-37 (135)
9 PRK10780 periplasmic chaperone 93.5 1.2 2.6E-05 33.2 9.3 48 8-55 1-48 (165)
10 PF14235 DUF4337: Domain of un 93.4 0.56 1.2E-05 35.7 7.5 58 26-85 41-98 (157)
11 PF10805 DUF2730: Protein of u 93.2 1.9 4.2E-05 30.5 9.7 77 9-85 7-90 (106)
12 PRK11637 AmiB activator; Provi 93.0 1.9 4.1E-05 36.3 10.9 19 9-27 21-40 (428)
13 PF06295 DUF1043: Protein of u 92.9 2.7 5.9E-05 30.6 10.5 53 12-68 2-54 (128)
14 PF06305 DUF1049: Protein of u 92.5 0.77 1.7E-05 29.0 6.2 35 11-45 23-57 (68)
15 PF10883 DUF2681: Protein of u 92.4 2.5 5.4E-05 30.0 9.2 26 55-80 32-57 (87)
16 COG1422 Predicted membrane pro 92.2 1.3 2.8E-05 35.8 8.5 59 11-78 46-104 (201)
17 PF04880 NUDE_C: NUDE protein, 91.7 0.44 9.6E-06 37.1 5.2 47 54-114 1-47 (166)
18 PF03672 UPF0154: Uncharacteri 91.5 0.46 1E-05 32.2 4.5 19 12-30 3-21 (64)
19 TIGR02209 ftsL_broad cell divi 91.2 2.7 5.9E-05 27.5 7.9 12 59-70 37-48 (85)
20 PRK09039 hypothetical protein; 90.9 4.3 9.3E-05 34.0 10.6 25 49-73 77-101 (343)
21 PRK11677 hypothetical protein; 90.7 5.8 0.00013 29.9 11.2 52 12-67 6-57 (134)
22 PRK01844 hypothetical protein; 90.7 0.64 1.4E-05 32.2 4.6 19 12-30 10-28 (72)
23 PHA01750 hypothetical protein 90.5 4.5 9.8E-05 28.3 9.7 71 8-82 1-71 (75)
24 PRK00523 hypothetical protein; 90.3 0.71 1.5E-05 32.0 4.6 19 12-30 11-29 (72)
25 PF08317 Spc7: Spc7 kinetochor 89.5 3.4 7.4E-05 34.0 8.8 53 55-114 232-285 (325)
26 PF12072 DUF3552: Domain of un 89.5 8.2 0.00018 29.8 10.6 18 12-29 5-22 (201)
27 COG3763 Uncharacterized protei 89.0 1.1 2.3E-05 31.1 4.7 19 12-30 9-28 (71)
28 PF06120 Phage_HK97_TLTM: Tail 88.9 6.3 0.00014 33.3 10.1 68 18-85 29-113 (301)
29 PF14991 MLANA: Protein melan- 88.5 0.14 3E-06 38.5 0.0 22 11-32 31-52 (118)
30 TIGR01386 cztS_silS_copS heavy 88.0 9 0.0002 30.2 9.9 26 46-71 218-243 (457)
31 PRK13729 conjugal transfer pil 87.8 2.5 5.4E-05 37.9 7.3 43 43-85 66-108 (475)
32 PRK10361 DNA recombination pro 87.4 12 0.00026 33.5 11.3 16 13-28 8-23 (475)
33 PRK11637 AmiB activator; Provi 87.2 4.8 0.0001 33.9 8.5 20 53-72 75-94 (428)
34 PF04011 LemA: LemA family; I 86.8 10 0.00022 28.5 9.3 43 11-53 3-47 (186)
35 PRK10803 tol-pal system protei 86.4 6.6 0.00014 31.6 8.5 24 8-31 5-28 (263)
36 PRK12705 hypothetical protein; 86.0 9.7 0.00021 34.1 10.1 18 11-28 6-23 (508)
37 COG4741 Predicted secreted end 85.3 14 0.0003 29.5 9.6 66 13-85 8-74 (175)
38 PF12729 4HB_MCP_1: Four helix 85.0 9.5 0.00021 25.7 9.5 45 18-62 17-65 (181)
39 PF06298 PsbY: Photosystem II 84.8 2.3 5.1E-05 26.0 4.0 32 12-43 5-36 (36)
40 PF12777 MT: Microtubule-bindi 84.7 15 0.00033 30.4 10.0 83 2-85 179-274 (344)
41 PF08139 LPAM_1: Prokaryotic m 84.3 0.7 1.5E-05 26.2 1.5 22 3-24 2-23 (25)
42 TIGR02209 ftsL_broad cell divi 84.2 9.2 0.0002 24.9 8.5 33 52-85 37-69 (85)
43 PF13801 Metal_resist: Heavy-m 83.9 5.5 0.00012 26.0 5.9 72 12-85 4-77 (125)
44 PRK06531 yajC preprotein trans 83.8 1.7 3.6E-05 32.0 3.6 33 11-44 3-36 (113)
45 PF13268 DUF4059: Protein of u 83.3 1.8 3.9E-05 30.1 3.4 27 7-33 9-35 (72)
46 PHA02047 phage lambda Rz1-like 83.3 16 0.00035 26.9 10.4 20 11-30 5-24 (101)
47 PF07047 OPA3: Optic atrophy 3 83.0 9.2 0.0002 28.0 7.3 34 16-49 85-118 (134)
48 PRK09835 sensor kinase CusS; P 82.9 20 0.00044 28.7 9.8 24 47-70 240-263 (482)
49 TIGR02230 ATPase_gene1 F0F1-AT 82.6 1.5 3.3E-05 31.6 3.0 19 11-29 76-94 (100)
50 PRK13428 F0F1 ATP synthase sub 81.3 34 0.00074 29.7 11.2 32 44-75 40-75 (445)
51 PRK07353 F0F1 ATP synthase sub 80.9 17 0.00037 25.7 10.8 65 11-75 10-79 (140)
52 PF11770 GAPT: GRB2-binding ad 80.3 0.59 1.3E-05 36.6 0.3 26 11-36 17-54 (158)
53 CHL00196 psbY photosystem II p 80.2 5 0.00011 24.6 4.2 31 12-42 5-35 (36)
54 smart00787 Spc7 Spc7 kinetocho 79.9 16 0.00036 30.5 8.6 16 99-114 265-280 (312)
55 PRK04098 sec-independent trans 79.8 27 0.00058 27.3 9.8 37 36-72 37-73 (158)
56 PF10828 DUF2570: Protein of u 79.7 19 0.00041 25.5 12.0 23 8-30 1-23 (110)
57 COG1862 YajC Preprotein transl 79.7 3.9 8.4E-05 29.4 4.2 37 9-45 7-44 (97)
58 PRK04654 sec-independent trans 79.6 33 0.00071 28.1 10.2 26 53-78 54-79 (214)
59 COG3883 Uncharacterized protei 79.5 18 0.0004 30.2 8.7 26 50-75 49-74 (265)
60 PRK13460 F0F1 ATP synthase sub 79.4 24 0.00051 26.4 11.4 41 35-75 49-90 (173)
61 PF05545 FixQ: Cbb3-type cytoc 79.1 3.7 8.1E-05 25.2 3.5 26 7-32 9-34 (49)
62 PF04899 MbeD_MobD: MbeD/MobD 78.8 18 0.00038 24.6 7.1 35 51-85 26-60 (70)
63 PRK12704 phosphodiesterase; Pr 78.7 46 0.00099 29.7 11.4 8 21-28 15-22 (520)
64 PF06667 PspB: Phage shock pro 78.1 5.9 0.00013 27.3 4.6 25 12-36 10-34 (75)
65 PF14316 DUF4381: Domain of un 77.9 13 0.00028 27.1 6.7 37 12-49 26-62 (146)
66 PRK13240 pbsY photosystem II p 77.9 7.9 0.00017 24.1 4.7 32 12-43 5-36 (40)
67 COG1579 Zn-ribbon protein, pos 77.9 27 0.00059 28.6 9.1 83 29-114 16-98 (239)
68 COG2959 HemX Uncharacterized e 77.7 45 0.00098 29.6 10.9 29 19-47 46-74 (391)
69 TIGR01144 ATP_synt_b ATP synth 77.6 23 0.0005 25.3 11.1 60 13-74 3-68 (147)
70 KOG2629|consensus 77.0 35 0.00075 29.3 9.7 34 4-42 79-112 (300)
71 PF09049 SNN_transmemb: Stanni 75.1 5.8 0.00013 23.9 3.4 24 2-25 3-33 (33)
72 PRK09173 F0F1 ATP synthase sub 75.1 30 0.00064 25.3 11.5 41 35-75 35-76 (159)
73 PRK00708 sec-independent trans 74.9 21 0.00046 28.9 7.7 22 22-43 32-55 (209)
74 PRK11556 multidrug efflux syst 74.7 3.3 7.1E-05 34.9 3.1 26 5-30 3-28 (415)
75 TIGR03321 alt_F1F0_F0_B altern 74.3 41 0.00089 26.5 11.4 40 35-74 38-78 (246)
76 PF10146 zf-C4H2: Zinc finger- 74.2 26 0.00057 28.3 8.0 53 34-86 6-58 (230)
77 PF04977 DivIC: Septum formati 74.1 15 0.00031 23.2 5.4 25 55-79 26-50 (80)
78 KOG0804|consensus 73.4 23 0.0005 32.2 8.2 56 30-87 333-388 (493)
79 PF02203 TarH: Tar ligand bind 73.1 25 0.00055 24.6 6.9 47 13-59 19-65 (171)
80 PRK13461 F0F1 ATP synthase sub 72.4 35 0.00076 24.9 11.2 40 36-75 39-79 (159)
81 PF04999 FtsL: Cell division p 72.0 27 0.00059 23.5 7.5 26 55-80 44-69 (97)
82 PRK10884 SH3 domain-containing 71.9 15 0.00032 29.1 6.1 23 47-69 94-116 (206)
83 PF11743 DUF3301: Protein of u 71.9 8.8 0.00019 26.9 4.3 36 10-45 1-36 (97)
84 PRK12705 hypothetical protein; 71.5 53 0.0012 29.6 10.0 24 11-34 10-33 (508)
85 TIGR02976 phageshock_pspB phag 71.4 10 0.00022 26.1 4.4 22 13-34 11-32 (75)
86 COG4736 CcoQ Cbb3-type cytochr 71.2 5.4 0.00012 26.6 2.9 28 8-35 10-37 (60)
87 PRK07021 fliL flagellar basal 70.8 4.5 9.8E-05 30.2 2.8 11 20-30 32-42 (162)
88 TIGR02680 conserved hypothetic 70.2 86 0.0019 31.0 11.8 75 10-85 241-315 (1353)
89 PF06305 DUF1049: Protein of u 69.7 13 0.00027 23.3 4.3 20 28-47 47-66 (68)
90 PF08826 DMPK_coil: DMPK coile 69.7 30 0.00064 23.0 6.8 39 47-85 19-57 (61)
91 PRK06231 F0F1 ATP synthase sub 69.1 53 0.0011 25.6 11.5 60 16-75 58-122 (205)
92 PRK10549 signal transduction h 68.8 59 0.0013 26.0 10.0 19 48-66 219-237 (466)
93 PF12553 DUF3742: Protein of u 68.7 3.8 8.3E-05 26.6 1.8 16 13-28 1-16 (54)
94 PF05278 PEARLI-4: Arabidopsis 68.6 51 0.0011 27.7 8.7 55 31-85 144-204 (269)
95 KOG4606|consensus 68.5 5.8 0.00013 30.0 2.9 32 1-32 24-55 (126)
96 PF08496 Peptidase_S49_N: Pept 68.2 31 0.00068 26.3 6.9 23 11-33 14-36 (155)
97 PRK10755 sensor protein BasS/P 66.9 59 0.0013 25.3 9.0 20 49-68 117-136 (356)
98 PRK11281 hypothetical protein; 65.6 93 0.002 30.7 11.0 72 6-77 6-104 (1113)
99 KOG0980|consensus 65.2 49 0.0011 32.4 8.9 36 53-88 445-480 (980)
100 PF13172 PepSY_TM_1: PepSY-ass 65.0 6.2 0.00013 22.6 2.0 22 7-28 11-32 (34)
101 TIGR01710 typeII_sec_gspG gene 64.9 42 0.00091 24.1 6.8 21 30-50 27-47 (134)
102 PRK10856 cytoskeletal protein 64.6 5.9 0.00013 33.2 2.6 19 11-29 117-135 (331)
103 TIGR03319 YmdA_YtgF conserved 64.4 1.1E+02 0.0023 27.4 10.8 11 17-27 8-18 (514)
104 PRK01919 tatB sec-independent 64.1 71 0.0015 25.3 9.5 8 23-30 33-40 (169)
105 PF12911 OppC_N: N-terminal TM 63.5 6.6 0.00014 23.9 2.0 18 11-28 23-40 (56)
106 KOG1962|consensus 63.4 79 0.0017 25.8 8.7 32 44-75 156-187 (216)
107 PF14283 DUF4366: Domain of un 63.1 1.1 2.4E-05 35.9 -1.8 18 11-28 163-180 (218)
108 PF12301 CD99L2: CD99 antigen 63.1 6.9 0.00015 30.5 2.5 19 14-33 125-143 (169)
109 PRK05585 yajC preprotein trans 62.6 17 0.00038 26.0 4.4 20 25-45 33-53 (106)
110 PF12729 4HB_MCP_1: Four helix 62.2 45 0.00098 22.4 7.5 42 11-52 14-65 (181)
111 PRK09458 pspB phage shock prot 61.8 15 0.00033 25.6 3.8 27 12-38 10-36 (75)
112 PRK01770 sec-independent trans 61.6 78 0.0017 24.9 9.0 30 36-65 37-66 (171)
113 PF00672 HAMP: HAMP domain; I 60.8 8.9 0.00019 23.3 2.3 16 14-29 6-21 (70)
114 cd01324 cbb3_Oxidase_CcoQ Cyto 60.6 11 0.00024 23.6 2.7 25 9-33 12-36 (48)
115 PF11119 DUF2633: Protein of u 60.2 15 0.00032 24.7 3.4 30 6-35 7-43 (59)
116 PRK05696 fliL flagellar basal 60.1 8.1 0.00017 29.1 2.4 15 18-32 32-46 (170)
117 PRK14471 F0F1 ATP synthase sub 60.0 66 0.0014 23.6 11.4 39 37-75 43-82 (164)
118 PRK07352 F0F1 ATP synthase sub 60.0 69 0.0015 23.8 10.8 62 14-75 27-93 (174)
119 PRK10364 sensor protein ZraS; 59.9 62 0.0013 26.4 7.6 25 18-42 204-228 (457)
120 PF12325 TMF_TATA_bd: TATA ele 59.9 67 0.0015 23.6 7.2 56 29-84 44-102 (120)
121 COG5393 Predicted membrane pro 59.8 11 0.00024 28.8 3.1 34 2-35 76-111 (131)
122 TIGR02887 spore_ger_x_C germin 59.7 4.1 8.9E-05 33.1 0.8 15 11-25 5-19 (371)
123 KOG3653|consensus 59.5 8.8 0.00019 35.1 2.9 24 13-36 163-186 (534)
124 PF12963 DUF3852: Protein of u 59.4 12 0.00026 27.9 3.1 24 8-31 57-80 (111)
125 PF05266 DUF724: Protein of un 59.4 54 0.0012 25.7 6.9 16 70-85 127-142 (190)
126 PF11559 ADIP: Afadin- and alp 59.0 66 0.0014 23.2 9.4 58 37-97 60-121 (151)
127 COG0586 DedA Uncharacterized m 59.0 38 0.00083 26.1 6.0 47 10-56 57-108 (208)
128 PF12273 RCR: Chitin synthesis 59.0 13 0.00027 26.7 3.1 7 21-27 17-23 (130)
129 PRK13455 F0F1 ATP synthase sub 58.9 75 0.0016 23.8 11.7 41 35-75 60-101 (184)
130 TIGR02956 TMAO_torS TMAO reduc 58.8 1.4E+02 0.003 26.8 11.4 13 50-62 389-401 (968)
131 PF12597 DUF3767: Protein of u 58.7 51 0.0011 24.1 6.3 39 9-47 69-107 (118)
132 PRK08455 fliL flagellar basal 58.5 11 0.00023 29.2 2.9 15 14-28 27-41 (182)
133 PF14163 SieB: Superinfection 58.1 37 0.0008 24.7 5.5 34 13-46 42-80 (151)
134 PF10721 DUF2514: Protein of u 58.0 82 0.0018 24.1 11.4 22 8-31 1-22 (162)
135 PF00430 ATP-synt_B: ATP synth 58.0 58 0.0013 22.3 9.6 40 36-75 33-73 (132)
136 PF11381 DUF3185: Protein of u 57.6 14 0.00031 24.4 2.9 30 14-43 5-34 (59)
137 PF12732 YtxH: YtxH-like prote 57.6 50 0.0011 21.5 8.8 34 12-45 5-38 (74)
138 PRK06298 type III secretion sy 57.3 48 0.001 28.3 6.8 53 14-66 193-249 (356)
139 PRK09108 type III secretion sy 57.3 49 0.0011 28.2 6.8 54 13-66 193-250 (353)
140 PRK13109 flhB flagellar biosyn 57.0 49 0.0011 28.3 6.8 53 13-65 200-256 (358)
141 PF04111 APG6: Autophagy prote 56.9 37 0.00081 28.2 6.0 45 38-85 45-89 (314)
142 PF14143 YrhC: YrhC-like prote 56.7 26 0.00057 24.1 4.2 33 8-40 38-70 (72)
143 PF14276 DUF4363: Domain of un 56.6 65 0.0014 22.4 7.3 16 61-76 43-58 (121)
144 PF11471 Sugarporin_N: Maltopo 56.5 54 0.0012 21.5 6.4 26 51-76 30-55 (60)
145 TIGR00739 yajC preprotein tran 55.8 23 0.00049 24.3 3.8 16 29-45 23-38 (84)
146 PF10256 Erf4: Golgin subfamil 55.7 33 0.00071 23.9 4.7 31 11-46 57-87 (118)
147 PF03528 Rabaptin: Rabaptin; 55.3 47 0.001 24.3 5.6 34 52-85 62-97 (106)
148 COG4792 EscU Type III secretor 55.1 31 0.00067 30.1 5.3 51 13-63 192-246 (349)
149 PRK05886 yajC preprotein trans 55.0 29 0.00063 25.4 4.5 34 11-45 4-39 (109)
150 PF11845 DUF3365: Protein of u 54.4 57 0.0012 23.7 6.0 27 17-43 8-34 (188)
151 COG4026 Uncharacterized protei 54.2 19 0.00042 30.4 3.9 42 54-98 157-198 (290)
152 PF09945 DUF2177: Predicted me 54.2 32 0.00069 25.7 4.7 40 6-45 3-42 (128)
153 PRK14858 tatA twin arginine tr 54.2 43 0.00093 24.6 5.3 14 10-23 8-21 (108)
154 PRK09040 hypothetical protein; 54.1 1E+02 0.0023 24.1 8.0 33 4-36 11-46 (214)
155 PF10473 CENP-F_leu_zip: Leuci 53.7 96 0.0021 23.5 8.2 55 31-85 19-91 (140)
156 COG4372 Uncharacterized protei 53.6 1.8E+02 0.0038 26.6 9.9 36 49-84 91-126 (499)
157 PF00769 ERM: Ezrin/radixin/mo 53.5 35 0.00075 27.4 5.1 12 56-67 36-47 (246)
158 PF07006 DUF1310: Protein of u 53.3 8.2 0.00018 28.5 1.4 19 14-32 10-28 (122)
159 PF06923 GutM: Glucitol operon 53.2 38 0.00081 24.3 4.8 28 16-43 8-35 (109)
160 PF03203 MerC: MerC mercury re 53.2 18 0.0004 25.5 3.2 27 9-35 40-66 (116)
161 TIGR03142 cytochro_ccmI cytoch 53.1 79 0.0017 22.3 7.0 34 52-85 42-75 (117)
162 PRK10847 hypothetical protein; 53.1 27 0.0006 27.0 4.4 27 11-37 73-99 (219)
163 PF08581 Tup_N: Tup N-terminal 53.1 73 0.0016 22.0 6.3 16 99-115 59-74 (79)
164 PF10168 Nup88: Nuclear pore c 52.9 1.4E+02 0.0031 27.8 9.6 79 34-113 563-647 (717)
165 PRK07718 fliL flagellar basal 52.8 10 0.00022 27.9 1.8 14 21-34 20-33 (142)
166 PF11346 DUF3149: Protein of u 52.3 26 0.00056 21.9 3.3 9 18-26 22-30 (42)
167 TIGR03789 pdsO proteobacterial 52.2 1.3E+02 0.0028 24.5 8.7 45 36-80 84-128 (239)
168 COG4726 PilX Tfp pilus assembl 52.1 75 0.0016 25.8 6.8 48 12-63 23-70 (196)
169 PRK09467 envZ osmolarity senso 51.9 1.2E+02 0.0026 24.1 9.8 19 50-68 210-228 (435)
170 PF10855 DUF2648: Protein of u 51.9 14 0.0003 22.4 2.0 18 21-41 11-28 (33)
171 TIGR01708 typeII_sec_gspH gene 51.9 61 0.0013 22.9 5.7 12 13-24 12-23 (143)
172 TIGR00328 flhB flagellar biosy 51.6 68 0.0015 27.3 6.8 53 14-66 192-248 (347)
173 PF03929 PepSY_TM: PepSY-assoc 51.5 15 0.00033 20.8 2.0 22 5-26 5-26 (27)
174 PF04751 DUF615: Protein of un 51.4 58 0.0012 24.9 5.8 71 32-112 59-130 (157)
175 PF04380 BMFP: Membrane fusoge 51.4 73 0.0016 21.5 7.9 77 1-80 1-77 (79)
176 PF09933 DUF2165: Predicted sm 51.3 18 0.00039 28.0 3.0 16 17-32 119-134 (160)
177 TIGR01069 mutS2 MutS2 family p 51.2 82 0.0018 29.4 7.7 51 35-85 510-561 (771)
178 CHL00019 atpF ATP synthase CF0 51.2 1E+02 0.0022 23.1 12.2 63 13-75 31-98 (184)
179 PRK00888 ftsB cell division pr 50.7 88 0.0019 22.2 7.3 8 78-85 66-73 (105)
180 TIGR01404 FlhB_rel_III type II 50.2 72 0.0016 27.0 6.7 53 13-65 190-246 (342)
181 PF07271 Cytadhesin_P30: Cytad 49.9 64 0.0014 27.5 6.3 25 11-38 79-103 (279)
182 PF10399 UCR_Fe-S_N: Ubiquitin 49.8 27 0.00059 21.5 3.1 20 9-28 12-32 (41)
183 COG5547 Small integral membran 49.8 22 0.00048 24.2 2.9 23 6-28 28-50 (62)
184 PF13584 BatD: Oxygen toleranc 49.6 35 0.00075 28.8 4.7 20 15-34 432-451 (484)
185 KOG0996|consensus 49.5 74 0.0016 32.2 7.4 47 34-80 407-453 (1293)
186 PF03962 Mnd1: Mnd1 family; I 49.4 93 0.002 24.1 6.8 54 29-85 62-121 (188)
187 PRK05702 flhB flagellar biosyn 48.9 67 0.0014 27.5 6.4 53 14-66 199-255 (359)
188 PRK12468 flhB flagellar biosyn 48.8 77 0.0017 27.4 6.8 51 15-65 200-254 (386)
189 PRK08475 F0F1 ATP synthase sub 48.8 1.1E+02 0.0024 22.9 11.5 41 35-75 55-96 (167)
190 PF06785 UPF0242: Uncharacteri 48.5 2E+02 0.0043 25.7 9.9 54 18-71 48-110 (401)
191 PF11221 Med21: Subunit 21 of 48.4 73 0.0016 23.4 5.8 34 52-85 103-136 (144)
192 PF05266 DUF724: Protein of un 48.4 1.2E+02 0.0027 23.7 7.3 47 49-98 127-173 (190)
193 COG4852 Predicted membrane pro 48.3 46 0.001 25.5 4.8 40 6-45 2-41 (134)
194 PF13179 DUF4006: Family of un 48.3 18 0.0004 24.7 2.4 33 15-49 23-55 (66)
195 COG4026 Uncharacterized protei 48.0 79 0.0017 26.9 6.5 36 50-85 132-167 (290)
196 PF10171 DUF2366: Uncharacteri 47.9 31 0.00068 27.0 3.9 20 14-33 46-65 (173)
197 PRK14475 F0F1 ATP synthase sub 47.6 1.1E+02 0.0025 22.6 10.0 41 35-75 43-84 (167)
198 KOG0161|consensus 47.2 1.3E+02 0.0028 31.7 8.9 58 28-85 1631-1699(1930)
199 TIGR00247 conserved hypothetic 47.0 20 0.00043 29.9 2.9 19 11-29 7-25 (342)
200 TIGR00847 ccoS cytochrome oxid 46.8 24 0.00052 22.8 2.7 21 12-32 7-30 (51)
201 PF07888 CALCOCO1: Calcium bin 46.7 1.1E+02 0.0023 28.2 7.6 17 57-73 175-191 (546)
202 PRK08156 type III secretion sy 46.7 89 0.0019 26.9 6.8 54 13-66 186-243 (361)
203 TIGR00998 8a0101 efflux pump m 46.3 27 0.00058 27.6 3.4 25 6-30 2-26 (334)
204 PF00769 ERM: Ezrin/radixin/mo 46.0 73 0.0016 25.6 5.9 39 47-85 41-86 (246)
205 CHL00118 atpG ATP synthase CF0 46.0 1.2E+02 0.0026 22.3 10.7 38 36-73 56-94 (156)
206 PF13706 PepSY_TM_3: PepSY-ass 45.8 25 0.00055 20.6 2.5 21 9-29 12-32 (37)
207 PRK00182 tatB sec-independent 45.7 1.5E+02 0.0032 23.3 7.3 30 36-65 38-69 (160)
208 PF09335 SNARE_assoc: SNARE as 45.4 89 0.0019 20.7 6.8 36 12-47 19-55 (123)
209 PF05663 DUF809: Protein of un 45.3 32 0.00069 26.0 3.5 33 11-49 28-60 (138)
210 PF14018 DUF4234: Domain of un 45.2 56 0.0012 21.0 4.3 27 13-39 47-73 (75)
211 PF03597 CcoS: Cytochrome oxid 45.1 27 0.00059 21.8 2.7 21 11-31 5-28 (45)
212 PRK12772 bifunctional flagella 44.9 83 0.0018 28.6 6.6 53 14-66 455-511 (609)
213 PRK11100 sensory histidine kin 44.4 1.1E+02 0.0025 24.1 6.7 32 11-42 7-38 (475)
214 PRK00409 recombination and DNA 44.3 1.6E+02 0.0035 27.6 8.5 52 34-85 514-566 (782)
215 PF06143 Baculo_11_kDa: Baculo 44.2 28 0.00062 24.6 2.9 18 4-21 29-46 (84)
216 PF07106 TBPIP: Tat binding pr 44.1 49 0.0011 24.4 4.3 6 106-111 146-151 (169)
217 PF11460 DUF3007: Protein of u 44.1 1.3E+02 0.0028 22.2 6.9 17 39-55 59-75 (104)
218 PF04612 T2SM: Type II secreti 44.0 7.6 0.00016 27.8 0.0 20 11-30 18-37 (160)
219 PF12576 DUF3754: Protein of u 43.9 52 0.0011 24.2 4.4 24 11-34 95-122 (141)
220 PF06961 DUF1294: Protein of u 43.9 28 0.00061 22.5 2.7 20 10-29 25-44 (55)
221 PF13627 LPAM_2: Prokaryotic l 43.9 20 0.00044 20.0 1.7 14 11-24 2-15 (24)
222 PF09527 ATPase_gene1: Putativ 43.7 38 0.00082 20.8 3.1 21 11-31 34-54 (55)
223 PF02936 COX4: Cytochrome c ox 43.7 27 0.00059 26.2 2.9 32 3-35 69-100 (142)
224 COG1422 Predicted membrane pro 43.6 1.6E+02 0.0034 24.0 7.4 16 11-26 49-64 (201)
225 PRK10772 cell division protein 43.5 1.3E+02 0.0027 22.0 6.3 16 14-29 26-41 (108)
226 PRK12721 secretion system appa 43.2 92 0.002 26.5 6.3 41 25-65 207-247 (349)
227 PF00038 Filament: Intermediat 42.9 1.7E+02 0.0036 23.2 7.4 33 51-83 80-112 (312)
228 KOG2792|consensus 42.5 56 0.0012 27.9 4.9 29 5-33 71-99 (280)
229 PF06295 DUF1043: Protein of u 42.5 1.3E+02 0.0028 21.9 6.2 38 11-48 4-44 (128)
230 KOG1962|consensus 42.4 1.9E+02 0.0041 23.6 8.5 16 39-54 130-145 (216)
231 PF09755 DUF2046: Uncharacteri 42.2 1.9E+02 0.0042 24.8 8.1 12 74-85 192-203 (310)
232 KOG4571|consensus 42.1 33 0.00071 29.3 3.5 41 64-114 245-285 (294)
233 PRK13922 rod shape-determining 41.8 1.7E+02 0.0037 23.0 11.6 36 37-72 60-95 (276)
234 COG1907 Predicted archaeal sug 41.8 47 0.001 28.7 4.4 41 8-48 216-256 (312)
235 PRK12785 fliL flagellar basal 41.4 8 0.00017 29.2 -0.2 14 18-31 37-50 (166)
236 PF10883 DUF2681: Protein of u 41.4 30 0.00065 24.5 2.7 26 16-41 8-35 (87)
237 PF08317 Spc7: Spc7 kinetochor 41.2 1.5E+02 0.0032 24.5 7.1 12 40-51 188-199 (325)
238 PRK12757 cell division protein 41.2 9.6 0.00021 31.6 0.2 21 12-33 4-24 (256)
239 PRK13922 rod shape-determining 41.1 1.8E+02 0.0038 22.9 8.4 25 53-77 69-93 (276)
240 PRK06342 transcription elongat 41.1 1.2E+02 0.0025 23.2 6.0 40 46-85 34-82 (160)
241 PF04186 FxsA: FxsA cytoplasmi 41.0 79 0.0017 22.8 4.9 31 12-42 27-57 (119)
242 PRK09731 putative general secr 41.0 1.8E+02 0.0038 22.9 8.1 47 9-67 37-83 (178)
243 PF14155 DUF4307: Domain of un 40.9 24 0.00053 25.2 2.2 25 8-32 6-30 (112)
244 PF06097 DUF945: Bacterial pro 40.9 26 0.00057 28.7 2.7 12 16-27 14-25 (460)
245 PF05701 WEMBL: Weak chloropla 40.7 42 0.00091 29.6 4.1 54 14-75 10-63 (522)
246 PRK14474 F0F1 ATP synthase sub 40.6 1.9E+02 0.0041 23.2 11.5 39 35-73 38-77 (250)
247 PF04012 PspA_IM30: PspA/IM30 40.3 1.4E+02 0.0031 22.6 6.4 70 33-113 146-218 (221)
248 PF14992 TMCO5: TMCO5 family 40.3 31 0.00068 29.1 3.1 22 11-32 221-242 (280)
249 cd07651 F-BAR_PombeCdc15_like 40.2 1.7E+02 0.0038 22.6 8.4 9 101-109 197-205 (236)
250 PF02706 Wzz: Chain length det 40.1 9.5 0.00021 26.2 0.0 22 11-32 18-39 (152)
251 PRK00404 tatB sec-independent 40.0 1.7E+02 0.0037 22.5 8.5 26 40-65 41-66 (141)
252 PF00038 Filament: Intermediat 39.8 1.9E+02 0.0041 22.9 8.4 43 43-85 206-248 (312)
253 PF14007 YtpI: YtpI-like prote 39.7 41 0.0009 23.8 3.2 33 5-37 55-87 (89)
254 PF12777 MT: Microtubule-bindi 39.7 2.2E+02 0.0047 23.6 9.0 70 16-85 201-281 (344)
255 PF07047 OPA3: Optic atrophy 3 39.6 1.5E+02 0.0032 21.7 7.9 29 12-40 78-106 (134)
256 PRK10600 nitrate/nitrite senso 39.3 2.4E+02 0.0053 24.0 10.1 36 47-82 179-215 (569)
257 COG3290 CitA Signal transducti 39.2 1E+02 0.0022 28.3 6.4 47 12-66 179-225 (537)
258 PRK10927 essential cell divisi 39.0 11 0.00024 32.4 0.2 23 11-33 37-59 (319)
259 PF10234 Cluap1: Clusterin-ass 38.7 1.4E+02 0.0031 24.9 6.7 61 53-114 169-234 (267)
260 PF06034 DUF919: Nucleopolyhed 38.7 74 0.0016 21.3 4.1 36 33-68 15-53 (62)
261 PF05701 WEMBL: Weak chloropla 38.3 2.8E+02 0.0062 24.5 10.5 33 48-80 283-315 (522)
262 PRK09470 cpxA two-component se 38.3 2E+02 0.0044 22.8 10.0 17 52-68 226-242 (461)
263 PF07888 CALCOCO1: Calcium bin 38.2 1.8E+02 0.004 26.7 7.8 9 106-114 372-380 (546)
264 KOG4593|consensus 38.2 1.8E+02 0.0038 27.9 7.8 51 35-85 239-293 (716)
265 PF15062 ARL6IP6: Haemopoietic 38.2 29 0.00063 24.8 2.2 17 13-29 26-42 (85)
266 PF07926 TPR_MLP1_2: TPR/MLP1/ 38.1 1.4E+02 0.0031 21.4 5.9 34 42-75 55-88 (132)
267 TIGR01241 FtsH_fam ATP-depende 37.9 42 0.0009 28.8 3.5 22 8-29 2-24 (495)
268 cd00922 Cyt_c_Oxidase_IV Cytoc 37.9 1.2E+02 0.0026 22.6 5.6 28 6-34 72-99 (136)
269 PRK10807 paraquat-inducible pr 37.9 35 0.00076 30.5 3.2 6 79-84 478-483 (547)
270 PF10473 CENP-F_leu_zip: Leuci 37.7 1.4E+02 0.0029 22.7 5.9 36 50-85 28-63 (140)
271 PF05609 LAP1C: Lamina-associa 37.7 48 0.001 29.8 3.9 17 12-28 222-238 (465)
272 PF11743 DUF3301: Protein of u 37.6 40 0.00087 23.5 2.9 20 14-33 2-21 (97)
273 COG5339 Uncharacterized protei 37.5 14 0.0003 33.3 0.6 15 13-27 9-23 (479)
274 PF04977 DivIC: Septum formati 37.4 1E+02 0.0023 19.2 5.3 8 77-84 55-62 (80)
275 PF13851 GAS: Growth-arrest sp 37.3 2E+02 0.0043 22.4 9.1 33 38-70 78-110 (201)
276 PF03707 MHYT: Bacterial signa 37.3 1E+02 0.0022 19.2 4.6 25 9-33 24-48 (62)
277 PF13514 AAA_27: AAA domain 37.2 1.6E+02 0.0034 28.2 7.4 48 33-80 147-201 (1111)
278 PF07798 DUF1640: Protein of u 37.1 1.8E+02 0.0039 21.9 8.6 11 105-115 138-148 (177)
279 PRK07352 F0F1 ATP synthase sub 37.1 1.7E+02 0.0038 21.7 11.2 53 31-83 37-94 (174)
280 PF11853 DUF3373: Protein of u 37.0 58 0.0013 29.5 4.4 31 21-51 16-46 (489)
281 PF10112 Halogen_Hydrol: 5-bro 36.9 1.8E+02 0.004 21.9 6.7 14 16-29 36-49 (199)
282 PF01576 Myosin_tail_1: Myosin 36.9 11 0.00025 35.2 0.0 68 28-98 573-651 (859)
283 PF01956 DUF106: Integral memb 36.9 1.4E+02 0.003 21.9 5.8 21 12-32 16-36 (168)
284 PRK06569 F0F1 ATP synthase sub 36.8 2E+02 0.0042 22.2 12.0 26 50-75 59-84 (155)
285 PF10368 YkyA: Putative cell-w 36.8 99 0.0021 24.3 5.2 43 15-65 2-44 (204)
286 PF09911 DUF2140: Uncharacteri 36.3 23 0.00051 27.4 1.6 24 6-29 1-24 (187)
287 PRK09973 putative outer membra 36.3 1.6E+02 0.0034 20.9 7.2 42 19-68 15-60 (85)
288 PRK14758 hypothetical protein; 35.9 52 0.0011 19.1 2.6 21 7-27 5-25 (27)
289 TIGR01707 gspI general secreti 35.7 1.5E+02 0.0033 20.7 7.0 33 23-58 20-52 (101)
290 PF04012 PspA_IM30: PspA/IM30 35.7 1.3E+02 0.0028 22.8 5.6 51 35-85 11-62 (221)
291 PF05911 DUF869: Plant protein 35.6 97 0.0021 29.5 5.8 32 48-79 626-657 (769)
292 PTZ00370 STEVOR; Provisional 35.5 48 0.001 28.4 3.5 29 10-38 261-289 (296)
293 PF11694 DUF3290: Protein of u 35.3 1.4E+02 0.0031 22.6 5.7 45 5-49 43-89 (149)
294 PF06810 Phage_GP20: Phage min 35.3 1.9E+02 0.0042 21.7 7.1 48 28-75 26-73 (155)
295 PF11694 DUF3290: Protein of u 35.1 32 0.00069 26.1 2.2 30 6-35 16-45 (149)
296 PF09771 Tmemb_18A: Transmembr 34.8 51 0.0011 24.8 3.2 32 3-35 25-56 (125)
297 PF12534 DUF3733: Leucine-rich 34.8 43 0.00092 22.6 2.5 24 9-32 28-51 (65)
298 PRK10815 sensor protein PhoQ; 34.8 2.9E+02 0.0062 23.5 9.9 33 13-48 197-229 (485)
299 TIGR01167 LPXTG_anchor LPXTG-m 34.7 58 0.0013 17.8 2.7 7 23-29 24-30 (34)
300 TIGR02736 cbb3_Q_epsi cytochro 34.7 45 0.00097 22.3 2.6 17 11-27 5-21 (56)
301 PRK11107 hybrid sensory histid 34.7 3.3E+02 0.0071 24.2 9.9 30 17-46 185-214 (919)
302 PF14197 Cep57_CLD_2: Centroso 34.5 1.4E+02 0.003 20.0 4.9 14 55-68 7-20 (69)
303 PRK09467 envZ osmolarity senso 34.4 2.4E+02 0.0051 22.5 8.7 7 21-27 168-174 (435)
304 COG3326 Predicted membrane pro 34.1 31 0.00068 25.0 1.9 25 9-33 39-63 (94)
305 KOG0971|consensus 34.1 1.2E+02 0.0027 30.3 6.3 46 40-85 259-308 (1243)
306 TIGR01410 tatB twin arginine-t 34.0 1.5E+02 0.0033 20.1 5.8 25 38-62 38-62 (80)
307 PF13260 DUF4051: Protein of u 33.8 70 0.0015 21.2 3.3 14 13-26 7-20 (54)
308 KOG4484|consensus 33.7 1.2E+02 0.0025 24.7 5.2 34 36-69 27-71 (199)
309 PF02529 PetG: Cytochrome B6-F 33.4 61 0.0013 20.1 2.8 26 10-35 8-33 (37)
310 KOG0999|consensus 33.4 70 0.0015 30.4 4.4 58 47-106 115-176 (772)
311 TIGR02338 gimC_beta prefoldin, 33.3 1.5E+02 0.0033 20.6 5.2 33 55-87 5-37 (110)
312 PF12273 RCR: Chitin synthesis 33.3 48 0.001 23.7 2.7 23 13-35 4-28 (130)
313 COG4942 Membrane-bound metallo 33.2 2.8E+02 0.0062 24.8 8.0 39 46-84 38-76 (420)
314 PLN00063 photosystem II core c 33.1 66 0.0014 26.1 3.8 32 12-43 88-119 (194)
315 PF13974 YebO: YebO-like prote 33.1 30 0.00066 24.3 1.6 22 14-35 2-23 (80)
316 PRK11463 fxsA phage T7 F exclu 33.1 1.1E+02 0.0025 22.9 4.9 28 12-39 31-58 (148)
317 PF05384 DegS: Sensor protein 32.9 2.3E+02 0.005 21.8 7.8 67 29-95 55-126 (159)
318 PF10548 P22_AR_C: P22AR C-ter 32.8 73 0.0016 21.6 3.4 30 18-47 13-42 (74)
319 PF04507 DUF576: Protein of un 32.6 15 0.00032 30.9 0.0 22 7-28 3-27 (257)
320 PRK07353 F0F1 ATP synthase sub 32.6 1.8E+02 0.0039 20.5 11.2 72 10-84 5-81 (140)
321 PF03962 Mnd1: Mnd1 family; I 32.6 76 0.0016 24.6 3.9 27 59-85 68-94 (188)
322 PF03896 TRAP_alpha: Transloco 32.5 47 0.001 27.8 2.9 20 11-30 208-227 (285)
323 PF07009 DUF1312: Protein of u 32.4 15 0.00032 25.9 0.0 17 12-28 2-18 (113)
324 PRK04778 septation ring format 32.4 1.2E+02 0.0025 27.0 5.5 12 32-43 25-36 (569)
325 COG2815 Uncharacterized protei 32.3 16 0.00034 30.7 0.1 18 12-29 4-21 (303)
326 KOG3030|consensus 32.2 57 0.0012 27.7 3.4 27 2-30 234-260 (317)
327 PF13127 DUF3955: Protein of u 32.1 52 0.0011 21.7 2.6 21 9-29 2-22 (63)
328 PF02416 MttA_Hcf106: mttA/Hcf 31.7 1.4E+02 0.003 18.9 4.7 26 37-62 21-47 (53)
329 PF10864 DUF2663: Protein of u 31.7 1.6E+02 0.0034 22.4 5.4 39 10-62 57-95 (130)
330 TIGR03659 IsdE heme ABC transp 31.7 39 0.00084 26.4 2.2 30 38-67 131-160 (289)
331 PRK09039 hypothetical protein; 31.5 3.2E+02 0.0068 23.0 8.0 48 36-86 137-184 (343)
332 TIGR01069 mutS2 MutS2 family p 31.4 2E+02 0.0044 26.9 7.1 15 69-83 538-552 (771)
333 TIGR03142 cytochro_ccmI cytoch 31.4 1.8E+02 0.0039 20.5 5.4 8 25-32 19-26 (117)
334 PF06480 FtsH_ext: FtsH Extrac 31.3 16 0.00034 23.5 0.0 18 11-28 1-18 (110)
335 PF06716 DUF1201: Protein of u 31.3 74 0.0016 21.0 3.1 16 16-31 20-35 (54)
336 PF09726 Macoilin: Transmembra 31.1 2E+02 0.0042 27.0 6.9 8 106-113 553-560 (697)
337 TIGR00634 recN DNA repair prot 30.8 2.6E+02 0.0057 24.6 7.3 43 45-87 160-202 (563)
338 TIGR01478 STEVOR variant surfa 30.7 46 0.00099 28.5 2.6 28 10-37 265-292 (295)
339 PF11337 DUF3139: Protein of u 30.7 1.6E+02 0.0034 19.7 4.8 12 30-41 32-43 (85)
340 COG1842 PspA Phage shock prote 30.4 1.6E+02 0.0036 23.6 5.6 34 52-85 30-63 (225)
341 KOG1853|consensus 30.4 2.9E+02 0.0064 23.9 7.3 51 30-80 102-163 (333)
342 PF11466 Doppel: Prion-like pr 30.3 19 0.00041 21.4 0.2 8 21-28 5-12 (30)
343 TIGR00247 conserved hypothetic 30.3 51 0.0011 27.5 2.8 19 11-29 10-28 (342)
344 KOG0137|consensus 30.2 4.2E+02 0.0092 25.1 8.8 94 14-107 449-579 (634)
345 PF09680 Tiny_TM_bacill: Prote 30.2 44 0.00095 19.0 1.7 14 11-24 8-21 (24)
346 PRK10935 nitrate/nitrite senso 29.9 1.3E+02 0.0029 24.9 5.1 35 11-45 156-190 (565)
347 PRK03947 prefoldin subunit alp 29.8 1.4E+02 0.003 21.2 4.7 39 51-89 4-42 (140)
348 PF13851 GAS: Growth-arrest sp 29.7 2.7E+02 0.0059 21.7 7.3 26 46-71 62-87 (201)
349 TIGR01655 yxeA_fam conserved h 29.7 33 0.00071 24.5 1.4 16 13-28 8-23 (114)
350 PRK05255 hypothetical protein; 29.7 1.9E+02 0.004 22.7 5.6 71 32-112 70-141 (171)
351 PF12592 DUF3763: Protein of u 29.6 72 0.0016 20.8 2.9 35 33-67 22-56 (57)
352 PF03920 TLE_N: Groucho/TLE N- 29.5 81 0.0017 24.3 3.5 39 45-83 22-60 (135)
353 COG0216 PrfA Protein chain rel 29.3 4E+02 0.0088 23.6 8.3 50 36-85 43-101 (363)
354 KOG0804|consensus 29.1 1.5E+02 0.0032 27.2 5.6 17 58-74 394-410 (493)
355 KOG0964|consensus 29.1 2.8E+02 0.0061 28.0 7.7 54 32-85 257-311 (1200)
356 COG5006 rhtA Threonine/homoser 28.9 61 0.0013 27.7 3.1 9 21-29 156-164 (292)
357 COG3197 FixS Uncharacterized p 28.9 52 0.0011 22.0 2.1 18 12-29 7-24 (58)
358 PRK03918 chromosome segregatio 28.9 4E+02 0.0087 24.1 8.3 25 39-63 172-196 (880)
359 PRK13883 conjugal transfer pro 28.8 38 0.00081 26.1 1.7 34 9-46 2-41 (151)
360 CHL00176 ftsH cell division pr 28.7 88 0.0019 28.6 4.2 60 5-64 124-204 (638)
361 PF00361 Oxidored_q1: NADH-Ubi 28.6 65 0.0014 24.8 3.0 29 5-33 139-167 (270)
362 PRK12667 putative monovalent c 28.6 89 0.0019 27.2 4.1 26 7-32 293-318 (520)
363 PF13994 PgaD: PgaD-like prote 28.5 79 0.0017 23.0 3.3 27 11-37 67-93 (138)
364 PF10853 DUF2650: Protein of u 28.2 46 0.001 20.4 1.7 15 7-21 23-37 (38)
365 KOG0639|consensus 28.2 1.3E+02 0.0028 28.5 5.1 37 45-81 22-58 (705)
366 PHA03231 glycoprotein BALF4; P 28.2 1.6E+02 0.0035 28.5 5.9 27 6-32 702-728 (829)
367 PF03938 OmpH: Outer membrane 27.7 1.7E+02 0.0038 20.7 4.9 16 37-52 23-38 (158)
368 PF12958 DUF3847: Protein of u 27.7 1.9E+02 0.0041 20.4 4.9 30 55-84 3-32 (86)
369 PF10177 DUF2371: Uncharacteri 27.5 27 0.00058 26.7 0.6 17 11-27 48-64 (141)
370 PRK06459 hydrogenase 4 subunit 27.5 80 0.0017 28.7 3.7 26 7-32 224-249 (585)
371 PLN03074 auxin influx permease 27.3 41 0.00089 29.2 1.8 23 8-30 426-450 (473)
372 PF02575 YbaB_DNA_bd: YbaB/Ebf 27.1 99 0.0022 20.4 3.3 20 45-64 1-20 (93)
373 PRK13454 F0F1 ATP synthase sub 27.1 2.8E+02 0.0061 21.0 11.4 39 37-75 66-105 (181)
374 PF10498 IFT57: Intra-flagella 27.1 3.4E+02 0.0074 23.3 7.2 30 53-82 273-302 (359)
375 PF02566 OsmC: OsmC-like prote 27.1 59 0.0013 21.0 2.2 20 16-35 11-30 (100)
376 PF14182 YgaB: YgaB-like prote 27.0 1.2E+02 0.0025 21.5 3.7 11 55-65 16-26 (79)
377 PRK10506 hypothetical protein; 27.0 2.6E+02 0.0057 20.6 5.9 12 56-67 48-59 (162)
378 PRK15396 murein lipoprotein; P 26.9 2.2E+02 0.0047 19.7 8.4 24 18-49 15-38 (78)
379 PF09731 Mitofilin: Mitochondr 26.9 58 0.0013 28.4 2.7 11 37-47 259-269 (582)
380 PF05279 Asp-B-Hydro_N: Aspart 26.9 59 0.0013 26.8 2.6 15 13-27 13-27 (243)
381 KOG0850|consensus 26.9 39 0.00085 28.3 1.5 16 23-43 167-182 (245)
382 PRK10884 SH3 domain-containing 26.8 3.1E+02 0.0068 21.7 6.6 16 33-48 90-105 (206)
383 PRK13561 putative diguanylate 26.8 4.2E+02 0.0092 23.0 8.8 11 20-30 160-170 (651)
384 PRK14475 F0F1 ATP synthase sub 26.7 2.7E+02 0.0058 20.6 11.8 37 46-82 48-84 (167)
385 PF01312 Bac_export_2: FlhB Hr 26.3 1.1E+02 0.0023 25.8 4.1 54 13-66 193-250 (343)
386 PRK15010 ABC transporter lysin 26.3 43 0.00093 25.2 1.6 19 11-29 4-22 (260)
387 TIGR00606 rad50 rad50. This fa 26.2 4.1E+02 0.0089 26.1 8.4 51 35-85 199-249 (1311)
388 PRK10893 lipopolysaccharide ex 26.1 65 0.0014 25.0 2.6 20 8-27 4-24 (192)
389 PF10066 DUF2304: Uncharacteri 26.1 2.4E+02 0.0051 19.8 6.3 40 9-48 66-105 (115)
390 PRK03100 sec-independent trans 26.0 3E+02 0.0064 20.9 7.3 9 55-63 59-67 (136)
391 PF08703 PLC-beta_C: PLC-beta 25.9 3.4E+02 0.0074 21.6 8.8 61 27-87 32-103 (185)
392 COG5633 Predicted periplasmic 25.9 32 0.00069 26.1 0.8 17 8-24 1-17 (123)
393 PRK10337 sensor protein QseC; 25.9 3.5E+02 0.0076 21.7 9.4 22 47-68 215-236 (449)
394 PRK11627 hypothetical protein; 25.9 59 0.0013 25.5 2.3 18 8-25 2-19 (192)
395 PF05961 Chordopox_A13L: Chord 25.9 62 0.0013 22.3 2.1 27 9-35 3-29 (68)
396 PF07423 DUF1510: Protein of u 25.8 48 0.001 26.8 1.9 18 14-31 22-39 (217)
397 PF06936 Selenoprotein_S: Sele 25.7 3.4E+02 0.0074 21.5 7.4 26 42-67 72-101 (190)
398 PF09730 BicD: Microtubule-ass 25.6 1.8E+02 0.0038 27.6 5.7 53 49-106 44-103 (717)
399 PF05360 YiaAB: yiaA/B two hel 25.6 73 0.0016 20.1 2.3 17 11-27 7-23 (53)
400 PF05337 CSF-1: Macrophage col 25.6 23 0.0005 30.1 0.0 20 14-34 235-254 (285)
401 PRK10370 formate-dependent nit 25.5 2E+02 0.0043 21.7 5.1 15 49-63 53-67 (198)
402 PRK05771 V-type ATP synthase s 25.4 1.5E+02 0.0033 26.5 5.0 59 23-81 178-250 (646)
403 COG1463 Ttg2C ABC-type transpo 25.4 89 0.0019 26.0 3.4 24 8-31 10-33 (359)
404 PF12130 DUF3585: Protein of u 25.4 1.6E+02 0.0034 21.9 4.4 34 55-88 4-37 (142)
405 KOG4112|consensus 25.4 87 0.0019 23.1 2.9 22 14-35 30-51 (101)
406 PRK10381 LPS O-antigen length 25.3 72 0.0016 27.2 2.9 23 11-33 42-64 (377)
407 TIGR02168 SMC_prok_B chromosom 25.3 1.9E+02 0.0041 26.2 5.6 67 46-115 684-750 (1179)
408 KOG0612|consensus 25.2 4.2E+02 0.0091 27.2 8.3 28 58-85 499-526 (1317)
409 PRK10381 LPS O-antigen length 25.1 83 0.0018 26.8 3.2 18 12-29 342-359 (377)
410 PF02699 YajC: Preprotein tran 25.0 1.4E+02 0.0031 20.1 3.8 36 13-48 2-37 (82)
411 TIGR02596 Verrucomicrobium spi 25.0 2.5E+02 0.0055 22.3 5.7 10 57-66 39-48 (195)
412 PF01093 Clusterin: Clusterin; 25.0 5E+02 0.011 23.3 8.1 57 26-85 13-69 (436)
413 COG1382 GimC Prefoldin, chaper 24.9 2.4E+02 0.0052 21.1 5.3 33 57-89 10-42 (119)
414 PF13870 DUF4201: Domain of un 24.9 2.9E+02 0.0063 20.5 7.6 40 46-85 91-130 (177)
415 KOG2991|consensus 24.8 3.2E+02 0.0069 23.8 6.6 72 41-115 106-187 (330)
416 TIGR02977 phageshock_pspA phag 24.7 3.3E+02 0.0072 21.1 7.3 49 37-85 14-63 (219)
417 COG4597 BatB ABC-type amino ac 24.7 95 0.0021 27.5 3.5 27 11-37 188-214 (397)
418 PRK09793 methyl-accepting prot 24.7 4.5E+02 0.0098 22.6 8.3 26 16-41 18-43 (533)
419 PF14316 DUF4381: Domain of un 24.5 1.9E+02 0.0041 21.0 4.6 32 11-42 28-59 (146)
420 PF15619 Lebercilin: Ciliary p 24.4 3.5E+02 0.0076 21.2 7.5 18 54-71 20-37 (194)
421 PF02880 PGM_PMM_III: Phosphog 24.4 1.1E+02 0.0024 20.9 3.3 35 2-41 75-109 (113)
422 PF13908 Shisa: Wnt and FGF in 24.4 51 0.0011 24.6 1.7 16 11-26 84-99 (179)
423 PF13042 DUF3902: Protein of u 24.4 78 0.0017 25.1 2.7 19 13-31 8-26 (161)
424 PF06699 PIG-F: GPI biosynthes 24.2 94 0.002 24.4 3.1 20 8-27 134-153 (190)
425 PF13721 SecD-TM1: SecD export 24.1 88 0.0019 22.0 2.7 21 2-22 1-21 (101)
426 TIGR03177 pilus_cpaB Flp pilus 24.1 62 0.0013 25.6 2.1 17 13-29 2-18 (261)
427 PF00335 Tetraspannin: Tetrasp 23.9 86 0.0019 21.8 2.6 8 21-28 61-68 (221)
428 PF13858 DUF4199: Protein of u 23.8 1.4E+02 0.0031 21.2 3.9 22 11-32 32-53 (163)
429 PRK15471 chain length determin 23.8 81 0.0017 26.5 2.9 20 11-30 33-52 (325)
430 PF07111 HCR: Alpha helical co 23.7 1.9E+02 0.0041 27.8 5.4 40 43-84 581-620 (739)
431 TIGR02223 ftsN cell division p 23.6 29 0.00063 29.0 0.2 19 11-29 28-50 (298)
432 smart00831 Cation_ATPase_N Cat 23.5 94 0.002 18.9 2.5 17 8-24 44-60 (64)
433 PF07139 DUF1387: Protein of u 23.5 3.4E+02 0.0073 23.3 6.5 62 47-114 183-252 (302)
434 PTZ00382 Variant-specific surf 23.5 29 0.00063 24.4 0.2 7 23-29 86-92 (96)
435 PF14276 DUF4363: Domain of un 23.4 2.6E+02 0.0056 19.4 7.5 16 49-64 45-60 (121)
436 PF13567 DUF4131: Domain of un 23.4 91 0.002 20.9 2.6 14 16-29 46-59 (176)
437 PF13400 Tad: Putative Flp pil 23.4 1.7E+02 0.0038 17.3 4.5 26 13-38 9-34 (48)
438 TIGR02302 aProt_lowcomp conser 23.4 1.5E+02 0.0032 28.6 4.8 35 33-67 565-605 (851)
439 PF06160 EzrA: Septation ring 23.3 1.2E+02 0.0025 27.1 3.9 13 29-42 19-31 (560)
440 PF09726 Macoilin: Transmembra 23.3 4.8E+02 0.01 24.5 7.9 15 44-58 486-500 (697)
441 PF05478 Prominin: Prominin; 23.3 6.2E+02 0.013 23.6 10.1 69 11-85 144-213 (806)
442 TIGR02595 PEP_exosort PEP-CTER 23.2 97 0.0021 17.0 2.2 15 17-31 8-22 (26)
443 PF13617 Lipoprotein_19: YnbE- 23.1 45 0.00098 22.1 1.0 14 11-24 3-16 (59)
444 PRK13684 Ycf48-like protein; P 23.1 47 0.001 27.1 1.3 19 7-25 7-25 (334)
445 TIGR03185 DNA_S_dndD DNA sulfu 23.0 3.3E+02 0.0072 24.4 6.7 41 45-85 208-248 (650)
446 PF09583 Phageshock_PspG: Phag 23.0 62 0.0013 22.2 1.7 11 17-27 51-61 (65)
447 PRK11091 aerobic respiration c 23.0 5.4E+02 0.012 22.8 12.1 22 30-51 79-100 (779)
448 PF05643 DUF799: Putative bact 23.0 56 0.0012 26.6 1.7 18 8-25 1-18 (215)
449 TIGR01710 typeII_sec_gspG gene 22.9 2.8E+02 0.006 19.8 5.2 21 49-69 36-56 (134)
450 PLN02715 lipid phosphate phosp 22.9 1.2E+02 0.0025 25.9 3.7 27 3-31 242-268 (327)
451 PRK10574 putative major pilin 22.9 3.3E+02 0.0072 20.4 6.1 11 35-45 36-46 (146)
452 COG4372 Uncharacterized protei 22.9 3.7E+02 0.0081 24.6 6.9 30 54-83 124-153 (499)
453 TIGR02554 PrgH type III secret 22.8 1.2E+02 0.0025 26.6 3.7 32 11-43 141-172 (389)
454 COG3583 Uncharacterized protei 22.8 89 0.0019 27.0 3.0 26 4-29 8-33 (309)
455 PRK11372 lysozyme inhibitor; P 22.6 79 0.0017 22.7 2.3 17 7-24 2-18 (109)
456 PRK14623 hypothetical protein; 22.6 1.4E+02 0.003 21.6 3.5 23 38-63 3-25 (106)
457 PF13334 DUF4094: Domain of un 22.4 2.9E+02 0.0062 19.5 6.4 18 11-28 4-21 (95)
458 PRK08377 NADH dehydrogenase su 22.2 1.7E+02 0.0036 25.4 4.6 24 9-32 273-296 (494)
459 KOG3684|consensus 22.2 6.2E+02 0.013 23.3 8.7 67 29-95 403-469 (489)
460 PLN02250 lipid phosphate phosp 22.2 1.2E+02 0.0026 25.6 3.6 30 2-33 217-246 (314)
461 PF03839 Sec62: Translocation 22.1 96 0.0021 25.2 2.9 20 5-24 106-125 (224)
462 PF04971 Lysis_S: Lysis protei 22.1 1E+02 0.0022 21.2 2.6 22 4-25 29-50 (68)
463 TIGR03348 VI_IcmF type VI secr 22.1 1.7E+02 0.0038 28.4 5.0 54 12-65 35-93 (1169)
464 PF12768 Rax2: Cortical protei 22.0 94 0.002 25.6 2.9 24 11-34 236-259 (281)
465 COG0711 AtpF F0F1-type ATP syn 21.9 3.4E+02 0.0074 20.2 10.5 16 51-66 56-71 (161)
466 PF04111 APG6: Autophagy prote 21.9 2.4E+02 0.0051 23.5 5.2 37 49-85 46-82 (314)
467 COG1579 Zn-ribbon protein, pos 21.9 4.6E+02 0.0099 21.6 6.9 28 53-80 89-116 (239)
468 TIGR01709 typeII_sec_gspL gene 21.9 2.3E+02 0.0049 23.4 5.1 21 12-32 241-261 (384)
469 PF10716 NdhL: NADH dehydrogen 21.9 1.2E+02 0.0026 21.5 3.0 20 9-28 12-31 (81)
470 cd08065 MPN_eIF3h Mpr1p, Pad1p 21.8 4.2E+02 0.0092 21.2 8.5 54 31-85 202-255 (266)
471 PF14341 PilX_N: PilX N-termin 21.8 2.1E+02 0.0045 17.6 4.4 28 12-39 11-38 (51)
472 COG3117 Uncharacterized protei 21.8 94 0.002 25.0 2.8 19 14-32 9-28 (188)
473 PF13807 GNVR: G-rich domain o 21.8 2E+02 0.0043 18.8 4.0 19 11-29 61-79 (82)
474 PF12097 DUF3573: Protein of u 21.7 2.4E+02 0.0052 25.1 5.4 22 8-29 2-23 (383)
475 KOG0161|consensus 21.7 3E+02 0.0064 29.2 6.7 40 46-85 1744-1783(1930)
476 COG2165 PulG Type II secretory 21.6 2.5E+02 0.0055 18.5 5.7 21 49-69 44-64 (149)
477 PRK04778 septation ring format 21.6 1.9E+02 0.0042 25.6 4.9 26 12-37 8-33 (569)
478 PF06522 B12D: NADH-ubiquinone 21.4 1.2E+02 0.0026 20.2 2.8 12 19-30 16-27 (73)
479 PF12718 Tropomyosin_1: Tropom 21.3 3.5E+02 0.0076 20.0 6.7 7 55-61 37-43 (143)
480 KOG0483|consensus 21.3 2.5E+02 0.0053 22.4 5.0 55 23-83 95-149 (198)
481 PHA03099 epidermal growth fact 21.3 96 0.0021 24.0 2.6 16 11-26 105-120 (139)
482 PRK01294 lipase chaperone; Pro 21.2 84 0.0018 26.6 2.5 7 20-26 16-22 (336)
483 PF13956 Ibs_toxin: Toxin Ibs, 21.2 60 0.0013 17.5 1.1 9 11-19 6-14 (19)
484 PF07811 TadE: TadE-like prote 21.2 1.6E+02 0.0035 16.7 3.1 21 12-32 13-33 (43)
485 COG5304 Uncharacterized protei 21.2 1.7E+02 0.0036 21.3 3.7 61 35-106 4-64 (92)
486 cd07650 F-BAR_Syp1p_like The F 21.1 4.1E+02 0.0089 20.8 7.2 71 39-111 103-175 (228)
487 COG3300 MHYT domain (predicted 21.1 98 0.0021 25.7 2.8 18 11-28 78-95 (236)
488 PF02831 gpW: gpW; InterPro: 21.1 96 0.0021 20.9 2.3 18 42-59 1-18 (68)
489 PHA02562 46 endonuclease subun 21.1 5.2E+02 0.011 22.0 7.4 66 30-95 335-400 (562)
490 PF10931 DUF2735: Protein of u 21.1 23 0.0005 22.9 -0.7 7 20-26 35-41 (51)
491 PF15330 SIT: SHP2-interacting 21.1 1.2E+02 0.0026 21.9 3.0 26 11-36 5-30 (107)
492 PRK15471 chain length determin 21.0 99 0.0021 26.0 2.9 18 11-28 297-314 (325)
493 PRK12773 flhB flagellar biosyn 21.0 3E+02 0.0065 26.1 6.1 59 8-66 481-546 (646)
494 PF15456 Uds1: Up-regulated Du 21.0 3.5E+02 0.0076 19.9 6.4 44 46-89 74-117 (124)
495 PRK03598 putative efflux pump 21.0 43 0.00093 26.8 0.7 17 12-28 9-25 (331)
496 PF12325 TMF_TATA_bd: TATA ele 21.0 3.5E+02 0.0075 19.9 6.7 59 48-113 25-83 (120)
497 PF08826 DMPK_coil: DMPK coile 21.0 2.6E+02 0.0057 18.5 7.0 53 46-115 4-56 (61)
498 PRK09379 membrane-bound transc 20.9 1.2E+02 0.0027 25.0 3.4 24 11-34 11-34 (303)
499 PF10960 DUF2762: Protein of u 20.9 2.8E+02 0.006 18.8 6.7 47 18-64 14-67 (71)
500 TIGR02168 SMC_prok_B chromosom 20.9 6.4E+02 0.014 23.0 8.6 88 25-115 221-312 (1179)
No 1
>KOG4403|consensus
Probab=100.00 E-value=1.1e-39 Score=282.16 Aligned_cols=104 Identities=47% Similarity=0.759 Sum_probs=97.3
Q ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 3 NSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERR 82 (115)
Q Consensus 3 ~~~n~~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~k 82 (115)
++|||+|||+|++|||||||||||||+|||+||+|+++||+|||+||+||++|+|||++|++||+||+||++||++||++
T Consensus 209 ~~~n~~KD~iLv~lili~v~gcw~ay~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerk 288 (575)
T KOG4403|consen 209 TNHNWTKDFILVVLILIGVGGCWFAYRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERK 288 (575)
T ss_pred CCcchhhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccccHHHHHHHHHhhC
Q psy17239 83 LQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115 (115)
Q Consensus 83 l~~~~~~~~~~~~l~~~~~~sdlEv~~LkqEie 115 (115)
+++ ||+|+. ..+++|..+.++|||
T Consensus 289 l~e-------a~rl~e--lreg~e~e~~rkelE 312 (575)
T KOG4403|consen 289 LDE-------APRLSE--LREGVENETSRKELE 312 (575)
T ss_pred Hhh-------hhhhhh--hhcchhHHHHHHHHH
Confidence 998 999998 446777777776664
No 2
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=96.90 E-value=0.021 Score=49.11 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhHH--HHHHHHHHhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 9 KDYILGTLILIALTICWYVYRQKESSQ--QHLRRMMKDMEGL--------QRAELDLANLQKELERARQEQENAASEKIK 78 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWfAy~Qnk~Sk--~hl~kmmkDle~L--------q~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~ 78 (115)
+=.+++++|++|+||+||+|.|-...+ .....+-..++.+ +..+..+..+.+.+..++..+......-+.
T Consensus 38 ~l~~~aili~la~g~g~y~~~~qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~ 117 (390)
T PRK10920 38 VLSAVAIAIALAAGAGLYYHGKQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDE 117 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777889999988886544422 2233333334333 223334444444455555555555555556
Q ss_pred HHHHHHH
Q psy17239 79 LERRLQE 85 (115)
Q Consensus 79 LE~kl~~ 85 (115)
|+.++.+
T Consensus 118 Lq~~~~~ 124 (390)
T PRK10920 118 LQQKVAT 124 (390)
T ss_pred HHHHHHH
Confidence 6666654
No 3
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=96.55 E-value=0.15 Score=36.22 Aligned_cols=67 Identities=21% Similarity=0.304 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 11 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQ 84 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~ 84 (115)
++|++++|+..|.+|+.+.+ |.++-.+.+....+=....+.-++|..+-.+.+.+..+-+.-|++++
T Consensus 7 ~~l~~lvl~L~~~l~~qs~~-------i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r 73 (110)
T PF10828_consen 7 IALAVLVLGLGGWLWYQSQR-------IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLR 73 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443322 44444455544444444444444554444455555555444444444
No 4
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=95.68 E-value=0.2 Score=45.04 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhh-hhhHHHHHHHHHHhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 9 KDYILGTLILIALTICWYVYRQ-KESSQQHLRRMMKDMEGLQ--------RAELDLANLQKELERARQEQENAASEKIKL 79 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWfAy~Q-nk~Sk~hl~kmmkDle~Lq--------~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~L 79 (115)
.=++++++|++|+||.||.++| ...-++.+.+...+.+.+. .+.....+++.++.....+.......-+.|
T Consensus 325 ~~~~~~l~~~~~~g~~~~~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L 404 (656)
T PRK06975 325 ALWFVVVVLACAAAVGGYALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQAL 404 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356777788888877764444 5555566666555543322 245555666667666666666666666666
Q ss_pred HHHHHH
Q psy17239 80 ERRLQE 85 (115)
Q Consensus 80 E~kl~~ 85 (115)
++.+.+
T Consensus 405 ~~~~~~ 410 (656)
T PRK06975 405 EQQYQD 410 (656)
T ss_pred HHHHHH
Confidence 666655
No 5
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=95.31 E-value=0.24 Score=37.60 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
.++++++++++.+...+..-++-+..-..+|+..++- .-|.-|.+...+++..+++.+....+-..++.+++.
T Consensus 6 ~l~~l~iilli~~~~~~~kl~kl~r~Y~~lm~g~~~~-~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 6 GLLVLVIILLILIIILNIKLRKLKRRYDALMRGKDGK-NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666667777777777788888899999888774 568888999999999999999988888899988875
No 6
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=94.73 E-value=0.78 Score=38.50 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=20.8
Q ss_pred HHHHHHHHh--HHHHHHhhhhhHHHHHHHHHHhhHHHHHHHH
Q psy17239 14 GTLILIALT--ICWYVYRQKESSQQHLRRMMKDMEGLQRAEL 53 (115)
Q Consensus 14 v~slvia~~--GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~ 53 (115)
+++|++|+| |.||...|....+..+..+-..+..+...-.
T Consensus 36 alll~~alg~~~~~~~~~q~~~~~~~~~~L~~ql~~~~~~~~ 77 (372)
T PF04375_consen 36 ALLLALALGAGGWYWQQQQLQQLQQQLQALQQQLQQLQQQLE 77 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444 3334444554556666777666666554333
No 7
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=93.98 E-value=1.1 Score=32.34 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIK 78 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~ 78 (115)
-|++|++-++-.--.-..|||.++.--.+.-.|.+.-.+||...+.|.++|..-.........+-+.
T Consensus 39 nl~lS~~Aa~~ap~IlmsQNRq~~~dr~ra~~D~~inl~ae~ei~~l~~~l~~l~~~~~~~~~~~~~ 105 (108)
T PF06210_consen 39 NLVLSLEAAYQAPLILMSQNRQAARDRLRAELDYQINLKAEQEIERLHRKLDALREKLGELLERDQE 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4566777777777777899999999999999999999999999999999999988888777766544
No 8
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=93.93 E-value=2.1 Score=32.37 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEG 47 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~ 47 (115)
++++++++|++|.||...++++.+.-+...-+.+..
T Consensus 2 ~~i~l~~~a~~~~~~~~~~~~~l~~~~~~a~~~~~~ 37 (135)
T TIGR03495 2 LLIVLLGLLVAGLGWQSQRLRNARADLERANRVLKA 37 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888888888777776655533
No 9
>PRK10780 periplasmic chaperone; Provisional
Probab=93.46 E-value=1.2 Score=33.18 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHH
Q psy17239 8 VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDL 55 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL 55 (115)
||=|++++++.+++.|.+.|+.+.|-.=..+.+.+..+..-+.+...|
T Consensus 1 Mkk~~~~~~l~l~~~~~~~a~a~~KIg~Vd~q~il~~~p~~k~~~~~l 48 (165)
T PRK10780 1 MKKWLLAAGLGLALATSAGAQAADKIAIVNMGSIFQQVPQRTGVSKQL 48 (165)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCeEEeeHHHHHHHCHHHHHHHHHH
Confidence 466788777777777888888888888788888888777766655443
No 10
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=93.37 E-value=0.56 Score=35.70 Aligned_cols=58 Identities=33% Similarity=0.440 Sum_probs=51.1
Q ss_pred HHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 26 YVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 26 fAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
++|-|-|+-|+|+-++-.|+-.+.... -..+++++++-+.+...-..|+..||++-++
T Consensus 41 Wa~YQAKsiK~~l~e~~~~~l~~~~~~--~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~ 98 (157)
T PF14235_consen 41 WAYYQAKSIKQHLAELAADLLELELAA--RAAYQKKIARYKKEKARYKSEAEELEAKAKE 98 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999998887644 5678899999999999999999999988776
No 11
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=93.22 E-value=1.9 Score=30.52 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhH-HHHHHhhhhhHHHHHHHHHHhhH----HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 9 KDYILGTLILIALTI-CWYVYRQKESSQQHLRRMMKDME----GLQRAELDLANL--QKELERARQEQENAASEKIKLER 81 (115)
Q Consensus 9 KD~~Lv~slvia~~G-cWfAy~Qnk~Sk~hl~kmmkDle----~Lq~AE~sL~dL--Q~~Le~A~~e~~~v~~EK~~LE~ 81 (115)
|+|-.+.+++.+++| .|+.....+..+..+..+..+++ .|+..|..+..| +..+.+-+-+-..+.++-..++.
T Consensus 7 ~~w~ii~a~~~~~~~~~~~~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 7 KNWGIIWAVFGIAGGIFWLWLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 566665555554444 34444444455677777755554 456677777777 66666666666666666666666
Q ss_pred HHHH
Q psy17239 82 RLQE 85 (115)
Q Consensus 82 kl~~ 85 (115)
+++-
T Consensus 87 ~l~~ 90 (106)
T PF10805_consen 87 RLQG 90 (106)
T ss_pred HHHH
Confidence 6654
No 12
>PRK11637 AmiB activator; Provisional
Probab=93.03 E-value=1.9 Score=36.26 Aligned_cols=19 Identities=0% Similarity=0.245 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhH-HHHH
Q psy17239 9 KDYILGTLILIALTI-CWYV 27 (115)
Q Consensus 9 KD~~Lv~slvia~~G-cWfA 27 (115)
.-++++++++.++.+ +|++
T Consensus 21 ~~~~~~~ll~~~~~~~~~~~ 40 (428)
T PRK11637 21 RPILYASVLSAGVLLCAFSA 40 (428)
T ss_pred hhHHHHHHHHHHHHHhhhcc
Confidence 344455444444433 4544
No 13
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=92.88 E-value=2.7 Score=30.61 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE 68 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e 68 (115)
++|.+||++|+|+|+...=+++ ..+.+++=+. |..++..|.+-+.++..=...
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~-~~~q~~l~~e---L~~~k~el~~yk~~V~~HF~~ 54 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN-QQKQAKLEQE---LEQAKQELEQYKQEVNDHFAQ 54 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666655444444 3444555444 446677777777777654433
No 14
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=92.51 E-value=0.77 Score=28.96 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhh
Q psy17239 11 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDM 45 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDl 45 (115)
++++..+++++.|+.+.+.-.-..+..+++.-|.+
T Consensus 23 ~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l 57 (68)
T PF06305_consen 23 LILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKEL 57 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555565555544444444444444433
No 15
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=92.40 E-value=2.5 Score=29.98 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 55 LANLQKELERARQEQENAASEKIKLE 80 (115)
Q Consensus 55 L~dLQ~~Le~A~~e~~~v~~EK~~LE 80 (115)
...||++-+.-+.|..-+.+|-.|-+
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~ 57 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAK 57 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445544444444444444444444
No 16
>COG1422 Predicted membrane protein [Function unknown]
Probab=92.23 E-value=1.3 Score=35.81 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 11 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIK 78 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~ 78 (115)
..|++++..++.|.++-+.| +..-|-|.+++-.....++|++-++|++++.....+|-+
T Consensus 46 p~lvilV~avi~gl~~~i~~---------~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq 104 (201)
T COG1422 46 PHLVILVAAVITGLYITILQ---------KLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQ 104 (201)
T ss_pred cHHHHHHHHHHHHHHHHHHH---------HHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 46788888888898888876 457799999999999999999999999988877777644
No 17
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=91.70 E-value=0.44 Score=37.09 Aligned_cols=47 Identities=30% Similarity=0.444 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHhh
Q psy17239 54 DLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEI 114 (115)
Q Consensus 54 sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~~~~~sdlEv~~LkqEi 114 (115)
+|+|+..+|.+|=|.+---..|- +|--.+..+..||++ |++.||||+
T Consensus 1 SLeD~EsklN~AIERnalLE~EL-------dEKE~L~~~~QRLkD-------E~RDLKqEl 47 (166)
T PF04880_consen 1 SLEDFESKLNQAIERNALLESEL-------DEKENLREEVQRLKD-------ELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHCH---------------------
T ss_pred CHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 68999999999887665444443 221123335566665 777777775
No 18
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=91.50 E-value=0.46 Score=32.16 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhHHHHHHhh
Q psy17239 12 ILGTLILIALTICWYVYRQ 30 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Q 30 (115)
+.+.+|+++++|.|+|..+
T Consensus 3 iilali~G~~~Gff~ar~~ 21 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKY 21 (64)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777554
No 19
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=91.18 E-value=2.7 Score=27.46 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy17239 59 QKELERARQEQE 70 (115)
Q Consensus 59 Q~~Le~A~~e~~ 70 (115)
+++++..+.++.
T Consensus 37 ~~~~~~l~~en~ 48 (85)
T TIGR02209 37 QLEIDKLQKEWR 48 (85)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 20
>PRK09039 hypothetical protein; Validated
Probab=90.93 E-value=4.3 Score=34.02 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 49 QRAELDLANLQKELERARQEQENAA 73 (115)
Q Consensus 49 q~AE~sL~dLQ~~Le~A~~e~~~v~ 73 (115)
..++..+.+++.+++.|+.......
T Consensus 77 ~~l~~~l~~l~~~l~~a~~~r~~Le 101 (343)
T PRK09039 77 QDLQDSVANLRASLSAAEAERSRLQ 101 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666665555544433
No 21
>PRK11677 hypothetical protein; Provisional
Probab=90.70 E-value=5.8 Score=29.87 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQ 67 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~ 67 (115)
.+|.+||++++|++.+..=+++. .+-+++=+ .|.+++.+|.+-+.++..=..
T Consensus 6 a~i~livG~iiG~~~~R~~~~~~-~~q~~le~---eLe~~k~ele~YkqeV~~HFa 57 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNRKL-RQQQALQY---ELEKNKAELEEYRQELVSHFA 57 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccchh-hHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555544444333333 33344443 345566667766666655443
No 22
>PRK01844 hypothetical protein; Provisional
Probab=90.68 E-value=0.64 Score=32.23 Aligned_cols=19 Identities=5% Similarity=-0.164 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhHHHHHHhh
Q psy17239 12 ILGTLILIALTICWYVYRQ 30 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Q 30 (115)
+.+.+|+++++|.|+|-.+
T Consensus 10 ~I~~li~G~~~Gff~ark~ 28 (72)
T PRK01844 10 GVVALVAGVALGFFIARKY 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455777788888887554
No 23
>PHA01750 hypothetical protein
Probab=90.47 E-value=4.5 Score=28.25 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 8 VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERR 82 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~k 82 (115)
+-|++||++++-...-.-||.+|--. +|++|.||-=. .--.++|.+|-.+++...-.+.+....-.++.++
T Consensus 1 m~~~VLvLtlmSTtaTtlFaIiqlYl---KIKq~lkdAvk-eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 1 MSETVLVLTLMSTTATTLFAIIQLYL---KIKQALKDAVK-EIVNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 35899999999988899999988543 46677666311 1234578888888887776666543333333333
No 24
>PRK00523 hypothetical protein; Provisional
Probab=90.32 E-value=0.71 Score=32.02 Aligned_cols=19 Identities=11% Similarity=-0.006 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhHHHHHHhh
Q psy17239 12 ILGTLILIALTICWYVYRQ 30 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Q 30 (115)
+.+.+|+++++|.|+|-.+
T Consensus 11 ~i~~li~G~~~Gffiark~ 29 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSKKM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445677778888887654
No 25
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.52 E-value=3.4 Score=33.96 Aligned_cols=53 Identities=30% Similarity=0.446 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc-cccccHHHHHHHHHhh
Q psy17239 55 LANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKS-SSAFSDLEVCQLKQEI 114 (115)
Q Consensus 55 L~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~-~~~~sdlEv~~LkqEi 114 (115)
+.+++.+++.-...-+....+|..+..++.+ +.+... ..+++.-||.+|++++
T Consensus 232 l~el~~el~~l~~~i~~~~~~k~~l~~eI~e-------~~~~~~~~r~~t~~Ev~~Lk~~~ 285 (325)
T PF08317_consen 232 LAELQEELEELEEKIEELEEQKQELLAEIAE-------AEKIREECRGWTRSEVKRLKAKV 285 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcCCCHHHHHHHHHHH
Confidence 3344444444444444444444444444444 333322 3355666999998875
No 26
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=89.49 E-value=8.2 Score=29.77 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhHHHHHHh
Q psy17239 12 ILGTLILIALTICWYVYR 29 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~ 29 (115)
++++.+++|++++||.+.
T Consensus 5 ~~i~~~~vG~~~G~~~~~ 22 (201)
T PF12072_consen 5 IAIVALIVGIGIGYLVRK 22 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555666666666544
No 27
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.03 E-value=1.1 Score=31.14 Aligned_cols=19 Identities=5% Similarity=-0.020 Sum_probs=10.3
Q ss_pred HHHHHH-HHHHhHHHHHHhh
Q psy17239 12 ILGTLI-LIALTICWYVYRQ 30 (115)
Q Consensus 12 ~Lv~sl-via~~GcWfAy~Q 30 (115)
+.++++ ++.+||.|+|-+|
T Consensus 9 ~ivl~ll~G~~~G~fiark~ 28 (71)
T COG3763 9 LIVLALLAGLIGGFFIARKQ 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 333444 4455677776655
No 28
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=88.90 E-value=6.3 Score=33.25 Aligned_cols=68 Identities=19% Similarity=0.386 Sum_probs=45.8
Q ss_pred HHHHhHHHHHHhhhhh-----HH------HHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 18 LIALTICWYVYRQKES-----SQ------QHLRRMMKDMEGLQ------RAELDLANLQKELERARQEQENAASEKIKLE 80 (115)
Q Consensus 18 via~~GcWfAy~Qnk~-----Sk------~hl~kmmkDle~Lq------~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE 80 (115)
|+..+|.||+|.||-. +. .-|+.=|++|...+ +++.++.+.++.++..+.+-.++..+..+++
T Consensus 29 ~ml~AgA~Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~ 108 (301)
T PF06120_consen 29 VMLGAGAWYYFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQ 108 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344578999888632 22 23444566665544 6788888888888888888887777777777
Q ss_pred HHHHH
Q psy17239 81 RRLQE 85 (115)
Q Consensus 81 ~kl~~ 85 (115)
+.+.+
T Consensus 109 ~~~~~ 113 (301)
T PF06120_consen 109 QQLAE 113 (301)
T ss_pred HHHhc
Confidence 66654
No 29
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=88.48 E-value=0.14 Score=38.49 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhhh
Q psy17239 11 YILGTLILIALTICWYVYRQKE 32 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk 32 (115)
|+.|+|.++.++||||.=+.+-
T Consensus 31 iL~VILgiLLliGCWYckRRSG 52 (118)
T PF14991_consen 31 ILIVILGILLLIGCWYCKRRSG 52 (118)
T ss_dssp ----------------------
T ss_pred eHHHHHHHHHHHhheeeeecch
Confidence 5667777888999999866553
No 30
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=88.01 E-value=9 Score=30.20 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 46 EGLQRAELDLANLQKELERARQEQEN 71 (115)
Q Consensus 46 e~Lq~AE~sL~dLQ~~Le~A~~e~~~ 71 (115)
+.+...-.+|..|+.+|.....+.+.
T Consensus 218 dEi~~l~~~~n~m~~~l~~~~~~~~~ 243 (457)
T TIGR01386 218 AELRELAQSFNAMLGRLEDAFQRLSQ 243 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777766555443
No 31
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=87.79 E-value=2.5 Score=37.90 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=33.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 43 KDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 43 kDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
-+...|..++....+|+++|+..+.|-+......+++|+++++
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIke 108 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEK 108 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 3445677777888999999999887777777777788887776
No 32
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=87.40 E-value=12 Score=33.53 Aligned_cols=16 Identities=19% Similarity=0.555 Sum_probs=8.1
Q ss_pred HHHHHHHHHhHHHHHH
Q psy17239 13 LGTLILIALTICWYVY 28 (115)
Q Consensus 13 Lv~slvia~~GcWfAy 28 (115)
.+++.++|++..||+-
T Consensus 8 ~~~~~~~~~~~~~~~~ 23 (475)
T PRK10361 8 YAVIALVGVAIGWLFA 23 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333445554557773
No 33
>PRK11637 AmiB activator; Provisional
Probab=87.24 E-value=4.8 Score=33.88 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17239 53 LDLANLQKELERARQEQENA 72 (115)
Q Consensus 53 ~sL~dLQ~~Le~A~~e~~~v 72 (115)
..+.+++++|..++..-...
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~ 94 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRET 94 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 34
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=86.81 E-value=10 Score=28.47 Aligned_cols=43 Identities=9% Similarity=0.348 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhHHHHH--HhhhhhHHHHHHHHHHhhHHHHHHHH
Q psy17239 11 YILGTLILIALTICWYV--YRQKESSQQHLRRMMKDMEGLQRAEL 53 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfA--y~Qnk~Sk~hl~kmmkDle~Lq~AE~ 53 (115)
+++++++++.+.++|+. |..=...+..+..-..+++..-+-.-
T Consensus 3 ~~ii~~i~~i~l~~~~~~~yN~L~~~~~~v~~a~s~I~~~l~rR~ 47 (186)
T PF04011_consen 3 ILIILIIIVIILIVWFIMSYNSLVRLRNAVQEAWSNIDVQLQRRH 47 (186)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777788887 66666777888887777776544443
No 35
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.37 E-value=6.6 Score=31.62 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhh
Q psy17239 8 VKDYILGTLILIALTICWYVYRQK 31 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcWfAy~Qn 31 (115)
++=.+|.+++|+|+.+.|+++.|-
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~a~a 28 (263)
T PRK10803 5 FRHHLLSLSLLVGVAAPWAAFAQA 28 (263)
T ss_pred hHHHHHHHHHHHHHhhhHHHhcCC
Confidence 344455556666665667666544
No 36
>PRK12705 hypothetical protein; Provisional
Probab=86.02 E-value=9.7 Score=34.15 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhHHHHHH
Q psy17239 11 YILGTLILIALTICWYVY 28 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy 28 (115)
++.+++++|++.-|||+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (508)
T PRK12705 6 LLVILLLLIGLLLGVLVV 23 (508)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566677777777653
No 37
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=85.26 E-value=14 Score=29.46 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=38.7
Q ss_pred HHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 13 LGTLILIALTICWYVYRQKESSQQHLRRMMKDM-EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDl-e~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+++.+++-+.-.-++|++ +-|..+.-=-++| +.||+| ++++.+..|+.-.......|..+|+|.++
T Consensus 8 ~iv~il~lvl~~l~~~Ir--~lq~~~e~k~~~l~e~l~~~-----e~~r~v~ea~~~ke~~~Kl~E~iekkiee 74 (175)
T COG4741 8 LIVFILALVLYLLRAYIR--SLQGKVESKARELEETLQKA-----ERERLVNEAQARKEEEWKLKEWIEKKIEE 74 (175)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455654 2333332222233 457777 56677777777777777888889999876
No 38
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=84.99 E-value=9.5 Score=25.73 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=26.2
Q ss_pred HHHHhHHHHHHhhhhhHHHHHHHHHHh----hHHHHHHHHHHHHHHHHH
Q psy17239 18 LIALTICWYVYRQKESSQQHLRRMMKD----MEGLQRAELDLANLQKEL 62 (115)
Q Consensus 18 via~~GcWfAy~Qnk~Sk~hl~kmmkD----le~Lq~AE~sL~dLQ~~L 62 (115)
++.++..+|+|.+-+.....+..+..+ +..+..+...+.+++..+
T Consensus 17 ~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (181)
T PF12729_consen 17 LLLLIVGIVGLYSLSQINQNVEEIYENNLPSIELLNDIRSNLQRIRRAL 65 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444466666666666666666544 455566666666665554
No 39
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=84.82 E-value=2.3 Score=26.04 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRRMMK 43 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmk 43 (115)
+|++++-+.+.+.|-.|.=-|.+-.++++|.+
T Consensus 5 ~liVl~Pil~A~gWa~fNIg~~Al~Q~~~~~~ 36 (36)
T PF06298_consen 5 LLIVLLPILPAAGWALFNIGRAALNQLQRMLN 36 (36)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC
Confidence 57888888889999999999999999998864
No 40
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=84.71 E-value=15 Score=30.36 Aligned_cols=83 Identities=22% Similarity=0.293 Sum_probs=44.4
Q ss_pred CCCCCchHHHHHHHHHHHHHhHHHHHHhhhhhHHH---------HHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 2 INSTSHVKDYILGTLILIALTICWYVYRQKESSQQ---------HLRRMMKD----MEGLQRAELDLANLQKELERARQE 68 (115)
Q Consensus 2 ~~~~n~~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~---------hl~kmmkD----le~Lq~AE~sL~dLQ~~Le~A~~e 68 (115)
+.+++|--+.+--+|.. |-+-|.|+....+|+.. .+.++-.. .+.|...+..|.+++.+|..-+.+
T Consensus 179 ~~~p~F~~e~v~~~S~A-a~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~ 257 (344)
T PF12777_consen 179 LKNPDFNPEKVRKASKA-AGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKE 257 (344)
T ss_dssp TTSTTSSHHHHHHH-TT-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666655532 23344444444444433 33333222 234445566666666667767777
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17239 69 QENAASEKIKLERRLQE 85 (115)
Q Consensus 69 ~~~v~~EK~~LE~kl~~ 85 (115)
.+....++..|+.++..
T Consensus 258 ~~~~~~e~~~l~~~~~~ 274 (344)
T PF12777_consen 258 YEEAQKEKQELEEEIEE 274 (344)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777766554
No 41
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=84.33 E-value=0.7 Score=26.23 Aligned_cols=22 Identities=32% Similarity=0.402 Sum_probs=20.1
Q ss_pred CCCCchHHHHHHHHHHHHHhHH
Q psy17239 3 NSTSHVKDYILGTLILIALTIC 24 (115)
Q Consensus 3 ~~~n~~KD~~Lv~slvia~~Gc 24 (115)
++++-+|-+++.++.+..+.||
T Consensus 2 ~~~~mmKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 2 PSLSMMKKILFPLLALFMLAGC 23 (25)
T ss_pred chHHHHHHHHHHHHHHHHHhhc
Confidence 5678899999999999999999
No 42
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=84.21 E-value=9.2 Score=24.91 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 52 ELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 52 E~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
++.+.++|.+-..-+.|...-.. ...+|+.-++
T Consensus 37 ~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar~ 69 (85)
T TIGR02209 37 QLEIDKLQKEWRDLQLEVAELSR-HERIEKIAKK 69 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHH
Confidence 33444444444444444433222 3334444433
No 43
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=83.93 E-value=5.5 Score=25.97 Aligned_cols=72 Identities=21% Similarity=0.117 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHL--RRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl--~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+|.+.++++++|.|+.+.....--.+- ..++.+.-.|. +..-..+++-....+.+-+....+-.....++..
T Consensus 4 al~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Lt--~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ 77 (125)
T PF13801_consen 4 ALNLLLAGALAGAAAAGPGPGGPGGPRRRHPMLADMLNLT--PEQQAKLRALMDEFRQEMRALRQELRAARQELRA 77 (125)
T ss_dssp -----------------------TTHHHHHHHHHHHS-TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCcccchhhhhhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777776665444332221 22222222222 2222334444444444444444444444455544
No 44
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=83.79 E-value=1.7 Score=31.98 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhHHHHHHh-hhhhHHHHHHHHHHh
Q psy17239 11 YILGTLILIALTICWYVYR-QKESSQQHLRRMMKD 44 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~-Qnk~Sk~hl~kmmkD 44 (115)
+.+++.+++-++..||.++ |+|..|.| .+|+.-
T Consensus 3 ~~~il~~vv~~~i~yf~iRPQkKr~Ke~-~em~~s 36 (113)
T PRK06531 3 IPTIIMFVVMLGLIFFMQRQQKKQAQER-QNQLNA 36 (113)
T ss_pred hHHHHHHHHHHHHHHheechHHHHHHHH-HHHHHh
Confidence 4555555555555677764 44444444 555543
No 45
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=83.25 E-value=1.8 Score=30.11 Aligned_cols=27 Identities=11% Similarity=0.481 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHHHhHHHHHHhhhhh
Q psy17239 7 HVKDYILGTLILIALTICWYVYRQKES 33 (115)
Q Consensus 7 ~~KD~~Lv~slvia~~GcWfAy~Qnk~ 33 (115)
|++-+++.+..|+.++|.|+.|+-.|+
T Consensus 9 YlqgL~ls~i~V~~~~~~wi~~Ra~~~ 35 (72)
T PF13268_consen 9 YLQGLLLSSILVLLVSGIWILWRALRK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 678899999999999999999987654
No 46
>PHA02047 phage lambda Rz1-like protein
Probab=83.25 E-value=16 Score=26.92 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhHHHHHHhh
Q psy17239 11 YILGTLILIALTICWYVYRQ 30 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Q 30 (115)
++.+.+||...+|.-|.|.|
T Consensus 5 ~~~~~~~v~~~~g~~y~~~~ 24 (101)
T PHA02047 5 IVAILVLVVVALGASYGFVQ 24 (101)
T ss_pred HHHHHHHHHHHhhhhHHHHH
Confidence 34445555555565666666
No 47
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=82.96 E-value=9.2 Score=28.05 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=22.2
Q ss_pred HHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHH
Q psy17239 16 LILIALTICWYVYRQKESSQQHLRRMMKDMEGLQ 49 (115)
Q Consensus 16 slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq 49 (115)
..|.+...+|-+|++.++.+.+-...-..++.|+
T Consensus 85 F~Va~~li~~E~~Rs~~ke~~Ke~~~~~~l~~L~ 118 (134)
T PF07047_consen 85 FSVAAGLIIYEYWRSARKEAKKEEELQERLEELE 118 (134)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3355556677788888887777666555555553
No 48
>PRK09835 sensor kinase CusS; Provisional
Probab=82.91 E-value=20 Score=28.71 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 47 GLQRAELDLANLQKELERARQEQE 70 (115)
Q Consensus 47 ~Lq~AE~sL~dLQ~~Le~A~~e~~ 70 (115)
.+...-.+|..|..+|+..-+.++
T Consensus 240 El~~l~~~~n~m~~~l~~~~~~~~ 263 (482)
T PRK09835 240 ELEQLVLSFNHMIERIEDVFTRQS 263 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556677777777777655533
No 49
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=82.60 E-value=1.5 Score=31.64 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhHHHHHHh
Q psy17239 11 YILGTLILIALTICWYVYR 29 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~ 29 (115)
+++++++++.++|||.||+
T Consensus 76 ~tl~~lllGv~~G~~n~w~ 94 (100)
T TIGR02230 76 WTLTMLIVGVVIGCLNAWH 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6778888888899999985
No 50
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=81.34 E-value=34 Score=29.67 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy17239 44 DMEGLQRAELDLANL----QKELERARQEQENAASE 75 (115)
Q Consensus 44 Dle~Lq~AE~sL~dL----Q~~Le~A~~e~~~v~~E 75 (115)
+|+.-..+...+.++ ++.|+.|+.|.+....+
T Consensus 40 ~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~ 75 (445)
T PRK13428 40 QLAESATAADRLAEADQAHTKAVEDAKAEAARVVEE 75 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333445555554 44477777766555444
No 51
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=80.94 E-value=17 Score=25.71 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhHHHHHHhhhh----hHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 11 YILGTLILIALTICWYVYRQKE----SSQQHLRRMMKDMEGLQ-RAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk----~Sk~hl~kmmkDle~Lq-~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
+.+|..+++.++..+|+|.==. .-+..|...+.+-+.++ .|+..+.+.+++|+.|+.+-.....+
T Consensus 10 ~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~ 79 (140)
T PRK07353 10 LMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAE 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777775211 11345566666665553 46777777777888777765544333
No 52
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=80.33 E-value=0.59 Score=36.61 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhHHHH------------HHhhhhhHHH
Q psy17239 11 YILGTLILIALTICWY------------VYRQKESSQQ 36 (115)
Q Consensus 11 ~~Lv~slvia~~GcWf------------Ay~Qnk~Sk~ 36 (115)
++|+++++.|+|-.|+ -|-|+|+||.
T Consensus 17 ~Ll~lLl~cgiGcvwhwkhr~~~~ftLPkflqRRssk~ 54 (158)
T PF11770_consen 17 SLLLLLLLCGIGCVWHWKHRDSTRFTLPKFLQRRSSKR 54 (158)
T ss_pred HHHHHHHHHhcceEEEeeccCccccchHHHHHhhhhhc
Confidence 4566677777777787 2567777774
No 53
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=80.20 E-value=5 Score=24.63 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRRMM 42 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmm 42 (115)
+|++++-+.+.+.|-.|.=.|.+-+++++|.
T Consensus 5 lliVl~Pil~A~~Wa~fNIg~~Al~Q~q~~~ 35 (36)
T CHL00196 5 LLVIAAPVLAAASWALFNIGRLAIQQIQRLS 35 (36)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 6788888999999999999999988888874
No 54
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.93 E-value=16 Score=30.51 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=12.1
Q ss_pred cccccHHHHHHHHHhh
Q psy17239 99 SSAFSDLEVCQLKQEI 114 (115)
Q Consensus 99 ~~~~sdlEv~~LkqEi 114 (115)
..+++.-|+.+|++.+
T Consensus 265 ~r~~t~~Ei~~Lk~~~ 280 (312)
T smart00787 265 CRGFTFKEIEKLKEQL 280 (312)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 4467777999998765
No 55
>PRK04098 sec-independent translocase; Provisional
Probab=79.81 E-value=27 Score=27.25 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=19.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 36 QHLRRMMKDMEGLQRAELDLANLQKELERARQEQENA 72 (115)
Q Consensus 36 ~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v 72 (115)
.-+++++.|..+=-..|..+.++++.+.+.+..-+..
T Consensus 37 r~~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~ 73 (158)
T PRK04098 37 KAVKKTINDAKSTLDKEINIEEIKEEALKYKKEFESA 73 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445555555444444555566666655554443333
No 56
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=79.71 E-value=19 Score=25.45 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhh
Q psy17239 8 VKDYILGTLILIALTICWYVYRQ 30 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcWfAy~Q 30 (115)
|+=|+.++++++.+|.|+|...|
T Consensus 1 ~~~~~~~~l~~lvl~L~~~l~~q 23 (110)
T PF10828_consen 1 MKKYIYIALAVLVLGLGGWLWYQ 23 (110)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 35577788888877777775543
No 57
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=79.68 E-value=3.9 Score=29.36 Aligned_cols=37 Identities=8% Similarity=0.363 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhHHHH-HHhhhhhHHHHHHHHHHhh
Q psy17239 9 KDYILGTLILIALTICWY-VYRQKESSQQHLRRMMKDM 45 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWf-Ay~Qnk~Sk~hl~kmmkDl 45 (115)
..+.+++.+|+.++..|| .+|..|+.++.-++|+..|
T Consensus 7 ~~~~~ll~~vl~~~ifyFli~RPQrKr~K~~~~ml~sL 44 (97)
T COG1862 7 SGLVLLLPLVLIFAIFYFLIIRPQRKRMKEHQELLNSL 44 (97)
T ss_pred ccHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhc
Confidence 345666777777777777 6665555555556665543
No 58
>PRK04654 sec-independent translocase; Provisional
Probab=79.61 E-value=33 Score=28.13 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 53 LDLANLQKELERARQEQENAASEKIK 78 (115)
Q Consensus 53 ~sL~dLQ~~Le~A~~e~~~v~~EK~~ 78 (115)
..+.+|++.|++.+..-+++..+-.+
T Consensus 54 l~~~ELrk~l~~~~~~i~~~~~~lk~ 79 (214)
T PRK04654 54 LEAEELKRSLQDVQASLREAEDQLRN 79 (214)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555444444444333
No 59
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.53 E-value=18 Score=30.19 Aligned_cols=26 Identities=12% Similarity=0.321 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 50 RAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 50 ~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
.++..+.+|+.+++..+....+...+
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~ 74 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKE 74 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333
No 60
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=79.36 E-value=24 Score=26.36 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 35 QQHLRRMMKDMEGLQ-RAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 35 k~hl~kmmkDle~Lq-~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
+..|..-+.+.+.++ .|+..+.+.+++|+.|+.+-.....+
T Consensus 49 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~ 90 (173)
T PRK13460 49 ASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAE 90 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666566665544 56777788888888887776554444
No 61
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=79.11 E-value=3.7 Score=25.18 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=18.9
Q ss_pred chHHHHHHHHHHHHHhHHHHHHhhhh
Q psy17239 7 HVKDYILGTLILIALTICWYVYRQKE 32 (115)
Q Consensus 7 ~~KD~~Lv~slvia~~GcWfAy~Qnk 32 (115)
+.+=+.++++.++-+|.+|+||+-++
T Consensus 9 ~~~~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 9 FARSIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 34556777778888888999996443
No 62
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=78.83 E-value=18 Score=24.61 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 51 AELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 51 AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
=+.++.+||.+++.++.+...--..-.+|.+++..
T Consensus 26 Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~ 60 (70)
T PF04899_consen 26 WQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQR 60 (70)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999999888777777788887766
No 63
>PRK12704 phosphodiesterase; Provisional
Probab=78.66 E-value=46 Score=29.68 Aligned_cols=8 Identities=13% Similarity=-0.039 Sum_probs=3.3
Q ss_pred HhHHHHHH
Q psy17239 21 LTICWYVY 28 (115)
Q Consensus 21 ~~GcWfAy 28 (115)
++|+++.|
T Consensus 15 ~iG~~ig~ 22 (520)
T PRK12704 15 VVGAVIGY 22 (520)
T ss_pred HHHHHHHH
Confidence 34443333
No 64
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=78.11 E-value=5.9 Score=27.32 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQ 36 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~ 36 (115)
+.++.+++|....|+-|+.++.+..
T Consensus 10 livf~ifVap~WL~lHY~sk~~~~~ 34 (75)
T PF06667_consen 10 LIVFMIFVAPIWLILHYRSKWKSSQ 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3456778888888999998776543
No 65
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=77.93 E-value=13 Score=27.08 Aligned_cols=37 Identities=19% Similarity=0.544 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQ 49 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq 49 (115)
++++++++.++++||.|+..+. ..--+.-.+.+..|.
T Consensus 26 l~~lll~~~~~~~~~~~r~~~~-~~yrr~Al~~L~~l~ 62 (146)
T PF14316_consen 26 LLALLLLLLILLLWRLWRRWRR-NRYRREALRELAQLE 62 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHcc
Confidence 3444444445556665554443 222333445555554
No 66
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=77.90 E-value=7.9 Score=24.13 Aligned_cols=32 Identities=19% Similarity=0.434 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRRMMK 43 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmk 43 (115)
+|++++-+.+.+.|-.|.=.+.+-+++.+|.+
T Consensus 5 lliVl~Pil~A~~Wa~fNIg~~Al~Q~q~~~~ 36 (40)
T PRK13240 5 LLIVLAPILAAAGWAVFNIGKAAREQFQRFLN 36 (40)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 57888888999999999999999999888875
No 67
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.89 E-value=27 Score=28.64 Aligned_cols=83 Identities=23% Similarity=0.235 Sum_probs=55.0
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccHHHHH
Q psy17239 29 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVC 108 (115)
Q Consensus 29 ~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~~~~~sdlEv~ 108 (115)
-....+-.|..+ .-=+-|.+|...++.+-+.++..+.+-.....++-.+|..++++.....++....+. .+.+=|++
T Consensus 16 D~e~~rl~~~~~--~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~-v~~~~e~~ 92 (239)
T COG1579 16 DLEKDRLEPRIK--EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA-VKDERELR 92 (239)
T ss_pred HHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHH
Confidence 344555555555 555678888888888888888888888888888888887777644433333333322 33333777
Q ss_pred HHHHhh
Q psy17239 109 QLKQEI 114 (115)
Q Consensus 109 ~LkqEi 114 (115)
.|..|+
T Consensus 93 aL~~E~ 98 (239)
T COG1579 93 ALNIEI 98 (239)
T ss_pred HHHHHH
Confidence 776664
No 68
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=77.72 E-value=45 Score=29.56 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=12.7
Q ss_pred HHHhHHHHHHhhhhhHHHHHHHHHHhhHH
Q psy17239 19 IALTICWYVYRQKESSQQHLRRMMKDMEG 47 (115)
Q Consensus 19 ia~~GcWfAy~Qnk~Sk~hl~kmmkDle~ 47 (115)
+|.||++|--.|+-.-...+.-.-.-+..
T Consensus 46 LGagg~~f~QqQ~~~~~~~l~a~~~q~~~ 74 (391)
T COG2959 46 LGAGGYYFGQQQNVLQTQELQALQQQLKA 74 (391)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444544444444444333433
No 69
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=77.60 E-value=23 Score=25.25 Aligned_cols=60 Identities=15% Similarity=0.203 Sum_probs=34.4
Q ss_pred HHHHHHHHHhHHHHH-----HhhhhhHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 13 LGTLILIALTICWYV-----YRQKESSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAAS 74 (115)
Q Consensus 13 Lv~slvia~~GcWfA-----y~Qnk~Sk~hl~kmmkDle~L-q~AE~sL~dLQ~~Le~A~~e~~~v~~ 74 (115)
+.++|++++.+.|++ +..+| +..|...+.+.+.. ..|+..+.+.+++|+.|+.+-..-..
T Consensus 3 i~Flil~~il~~~~~~pi~~~l~~R--~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~ 68 (147)
T TIGR01144 3 ISFILLVWFCMKYVWPPLAKAIETR--QKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIE 68 (147)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444442 22222 34566666666554 45677778888888888866544443
No 70
>KOG2629|consensus
Probab=76.98 E-value=35 Score=29.29 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=18.4
Q ss_pred CCCchHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHH
Q psy17239 4 STSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMM 42 (115)
Q Consensus 4 ~~n~~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmm 42 (115)
-+.+|+|+ .++.++..|-.|-+| +.-|..|-.+|
T Consensus 79 ~~~rwrdy--~vmAvi~aGi~y~~y---~~~K~YV~P~~ 112 (300)
T KOG2629|consen 79 VLRRWRDY--FVMAVILAGIAYAAY---RFVKSYVLPRF 112 (300)
T ss_pred chhhHHHH--HHHHHHHhhHHHHHH---HHHHHHHHHHh
Confidence 36789999 333444444444444 45555555555
No 71
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=75.10 E-value=5.8 Score=23.90 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=14.4
Q ss_pred CCCCCchHHHHHHHHHHHHH-------hHHH
Q psy17239 2 INSTSHVKDYILGTLILIAL-------TICW 25 (115)
Q Consensus 2 ~~~~n~~KD~~Lv~slvia~-------~GcW 25 (115)
|..|+..--++-++.|+||+ -|||
T Consensus 3 i~dhspttgvvti~viliavaalg~licgcw 33 (33)
T PF09049_consen 3 ITDHSPTTGVVTIIVILIAVAALGALICGCW 33 (33)
T ss_dssp S-TTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCccEEEehhHHHHHHHHhhhheecC
Confidence 34566666666666666554 4888
No 72
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=75.07 E-value=30 Score=25.28 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 35 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 35 k~hl~kmmkDle~L-q~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
+..|...+.+-+.+ ..|+..+.+.+.+|+.|+.+-+....+
T Consensus 35 ~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~ 76 (159)
T PRK09173 35 ADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAA 76 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655 457777888888888888776655444
No 73
>PRK00708 sec-independent translocase; Provisional
Probab=74.92 E-value=21 Score=28.85 Aligned_cols=22 Identities=5% Similarity=-0.049 Sum_probs=12.9
Q ss_pred hHHHHHHhhh--hhHHHHHHHHHH
Q psy17239 22 TICWYVYRQK--ESSQQHLRRMMK 43 (115)
Q Consensus 22 ~GcWfAy~Qn--k~Sk~hl~kmmk 43 (115)
+|-|+....+ ...+.++.+.++
T Consensus 32 lGk~v~k~R~~a~e~r~~~~e~~~ 55 (209)
T PRK00708 32 FGKMTARMRKMAGEFRRQFDEALR 55 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677766554 455556666555
No 74
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=74.66 E-value=3.3 Score=34.88 Aligned_cols=26 Identities=12% Similarity=0.377 Sum_probs=19.1
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHhh
Q psy17239 5 TSHVKDYILGTLILIALTICWYVYRQ 30 (115)
Q Consensus 5 ~n~~KD~~Lv~slvia~~GcWfAy~Q 30 (115)
+++.|=+++++.+++.++|+||+|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (415)
T PRK11556 3 GSRKSRWVIVIVVVIAAIAAFWFWQG 28 (415)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhhh
Confidence 45677778888777778887777655
No 75
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=74.32 E-value=41 Score=26.53 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 35 QQHLRRMMKDMEGLQ-RAELDLANLQKELERARQEQENAAS 74 (115)
Q Consensus 35 k~hl~kmmkDle~Lq-~AE~sL~dLQ~~Le~A~~e~~~v~~ 74 (115)
+..|...+.+-+..+ .|+..+.+.+++|+.|+.+......
T Consensus 38 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~ 78 (246)
T TIGR03321 38 EKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLT 78 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666554 3677777777777777766655444
No 76
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.17 E-value=26 Score=28.29 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 34 SQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEH 86 (115)
Q Consensus 34 Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~ 86 (115)
.+.++..|-+-...|.....++.+-.+-|+.-+.|...-..||....++|+.|
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI 58 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQI 58 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555666666666666666666666666666666666666653
No 77
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=74.15 E-value=15 Score=23.24 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 55 LANLQKELERARQEQENAASEKIKL 79 (115)
Q Consensus 55 L~dLQ~~Le~A~~e~~~v~~EK~~L 79 (115)
+.+++++++..+.+++....+...|
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555554444444443333
No 78
>KOG0804|consensus
Probab=73.36 E-value=23 Score=32.15 Aligned_cols=56 Identities=25% Similarity=0.288 Sum_probs=41.6
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 30 QKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ 87 (115)
Q Consensus 30 Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~ 87 (115)
|+++--+|+.+|-+ ..|...++-++++-.+.-..+.++.++..+|+..|+++...+
T Consensus 333 qr~y~e~~~~e~~q--sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q 388 (493)
T KOG0804|consen 333 QRKYYEQIMSEYEQ--SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQ 388 (493)
T ss_pred HHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 56666678888877 677777777777777777777777788888888887776543
No 79
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=73.08 E-value=25 Score=24.59 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=16.4
Q ss_pred HHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy17239 13 LGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQ 59 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ 59 (115)
+++++++|..|+|....-+...+.-+..-.+-...+.++...+....
T Consensus 19 ~~ll~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~r 65 (171)
T PF02203_consen 19 LLLLLVVGGLGFWGLRSSNESLEEIYQQSLQQVNALADASSNLLQAR 65 (171)
T ss_dssp ------HHCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445554443333332333333333444444444443333
No 80
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=72.44 E-value=35 Score=24.90 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=24.7
Q ss_pred HHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 36 QHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 36 ~hl~kmmkDle~L-q~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
..|...+.+.+.. ..|+..+.+.+++|+.|+.+-.....+
T Consensus 39 ~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~ 79 (159)
T PRK13461 39 SEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEE 79 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555443 456777778888888888775444433
No 81
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=72.04 E-value=27 Score=23.48 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 55 LANLQKELERARQEQENAASEKIKLE 80 (115)
Q Consensus 55 L~dLQ~~Le~A~~e~~~v~~EK~~LE 80 (115)
+.+++++..+.+.|+++-..|...|.
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555556655555555554
No 82
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.91 E-value=15 Score=29.13 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 47 GLQRAELDLANLQKELERARQEQ 69 (115)
Q Consensus 47 ~Lq~AE~sL~dLQ~~Le~A~~e~ 69 (115)
.|...|+.+.+++.+|..+..+.
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~ 116 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTW 116 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 44555555555555555555443
No 83
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=71.87 E-value=8.8 Score=26.88 Aligned_cols=36 Identities=31% Similarity=0.367 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhh
Q psy17239 10 DYILGTLILIALTICWYVYRQKESSQQHLRRMMKDM 45 (115)
Q Consensus 10 D~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDl 45 (115)
|++++++++++....|-.-.|.-.+..+.++.-+++
T Consensus 1 dLl~llll~~~~~~~w~~~~~~E~A~~~a~~~C~~~ 36 (97)
T PF11743_consen 1 DLLLLLLLALVGWFWWQSRRQRERALQAARRACKRQ 36 (97)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 444444443333333334445556666666665544
No 84
>PRK12705 hypothetical protein; Provisional
Probab=71.53 E-value=53 Score=29.58 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhH
Q psy17239 11 YILGTLILIALTICWYVYRQKESS 34 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~S 34 (115)
|+|++.++.++.-.|++++|..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~ 33 (508)
T PRK12705 10 LLLLIGLLLGVLVVLLKKRQRLAK 33 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999887666
No 85
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=71.36 E-value=10 Score=26.06 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHHHHHHhhhhhH
Q psy17239 13 LGTLILIALTICWYVYRQKESS 34 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~Qnk~S 34 (115)
.++.+++|....|+-|+-++.+
T Consensus 11 iif~ifVap~wl~lHY~~k~~~ 32 (75)
T TIGR02976 11 IIFVIFVAPLWLILHYRSKRKT 32 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc
Confidence 3445567777889999855443
No 86
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=71.25 E-value=5.4 Score=26.64 Aligned_cols=28 Identities=11% Similarity=0.336 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhhhHH
Q psy17239 8 VKDYILGTLILIALTICWYVYRQKESSQ 35 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcWfAy~Qnk~Sk 35 (115)
.+=+.++++.+.-+++.||||+=.|+..
T Consensus 10 a~a~~t~~~~l~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 10 ADAWGTIAFTLFFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhh
Confidence 3456788888888999999998655543
No 87
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=70.79 E-value=4.5 Score=30.19 Aligned_cols=11 Identities=9% Similarity=-0.206 Sum_probs=6.3
Q ss_pred HHhHHHHHHhh
Q psy17239 20 ALTICWYVYRQ 30 (115)
Q Consensus 20 a~~GcWfAy~Q 30 (115)
|.||.||...+
T Consensus 32 g~gg~~~~~~~ 42 (162)
T PRK07021 32 AGAGYSWWLSK 42 (162)
T ss_pred HHHHHHHHhhc
Confidence 34556666554
No 88
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=70.22 E-value=86 Score=31.04 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 10 DYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 10 D~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
++-=-.-.+-.+.++|=.|.+. .......++...-..+..+...+.+++.+++.++.+......+...+|+++..
T Consensus 241 ~l~~~~~~l~~i~~~y~~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 315 (1353)
T TIGR02680 241 RLEALERALRNFLQRYRRYART-MLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADA 315 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667777888888763 23344455555545555555555555555555555555555555555544444
No 89
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=69.75 E-value=13 Score=23.33 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=9.5
Q ss_pred HhhhhhHHHHHHHHHHhhHH
Q psy17239 28 YRQKESSQQHLRRMMKDMEG 47 (115)
Q Consensus 28 y~Qnk~Sk~hl~kmmkDle~ 47 (115)
.++.|+.+..++++=++++.
T Consensus 47 r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 47 RRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555444443
No 90
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=69.68 E-value=30 Score=22.97 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 47 GLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 47 ~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
.|.+.-.+...++.+|..|..-++.-..+-.+|+++|.+
T Consensus 19 EL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555556666655555555555555555544
No 91
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=69.13 E-value=53 Score=25.62 Aligned_cols=60 Identities=13% Similarity=0.236 Sum_probs=33.5
Q ss_pred HHHHHHhHHHHHHhhhh----hHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 16 LILIALTICWYVYRQKE----SSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 16 slvia~~GcWfAy~Qnk----~Sk~hl~kmmkDle~L-q~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
.+++.++..||+|.-=+ .-+..|.+.+.+.+.. ..|+..+.+.+++|+.|+.+-.....+
T Consensus 58 FlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~ 122 (205)
T PRK06231 58 FSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQ 122 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455553211 1134455555555554 346777788888888887776554443
No 92
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=68.76 E-value=59 Score=26.05 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17239 48 LQRAELDLANLQKELERAR 66 (115)
Q Consensus 48 Lq~AE~sL~dLQ~~Le~A~ 66 (115)
+...-.+|..|..+|++..
T Consensus 219 ~~~l~~~~n~m~~~l~~~~ 237 (466)
T PRK10549 219 LGRLAQDFNQLASTLEKNE 237 (466)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665443
No 93
>PF12553 DUF3742: Protein of unknown function (DUF3742); InterPro: IPR022213 This domain family is found in bacteria, and is approximately 50 amino acids in length. There is a single completely conserved residue Y that may be functionally important.
Probab=68.66 E-value=3.8 Score=26.62 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=13.1
Q ss_pred HHHHHHHHHhHHHHHH
Q psy17239 13 LGTLILIALTICWYVY 28 (115)
Q Consensus 13 Lv~slvia~~GcWfAy 28 (115)
|++++++++++.|+|-
T Consensus 1 laLll~f~~iaaw~~~ 16 (54)
T PF12553_consen 1 LALLLVFAAIAAWMAR 16 (54)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 4677899999999973
No 94
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=68.61 E-value=51 Score=27.73 Aligned_cols=55 Identities=27% Similarity=0.430 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q psy17239 31 KESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE------QENAASEKIKLERRLQE 85 (115)
Q Consensus 31 nk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e------~~~v~~EK~~LE~kl~~ 85 (115)
+.-|+..++.|...+..|.+|.-.+.=|..+|+...+. ++....||.+.++++..
T Consensus 144 ~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~ 204 (269)
T PF05278_consen 144 KELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLEL 204 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999998888888888887776 56677788888877765
No 95
>KOG4606|consensus
Probab=68.53 E-value=5.8 Score=30.05 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=26.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHhHHHHHHhhhh
Q psy17239 1 MINSTSHVKDYILGTLILIALTICWYVYRQKE 32 (115)
Q Consensus 1 ~~~~~n~~KD~~Lv~slvia~~GcWfAy~Qnk 32 (115)
|-|+..+|.=.+.++|+..|.+|.||..+--+
T Consensus 24 ~~Pst~RWRi~lvi~svc~gaigawywl~dpe 55 (126)
T KOG4606|consen 24 MGPSTGRWRIALVIFSVCTGAIGAWYWLIDPE 55 (126)
T ss_pred cCCCccchhhHHHHHHHHHHhhhhhhhhcCcc
Confidence 34677889999999999999999999876543
No 96
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=68.17 E-value=31 Score=26.31 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhh
Q psy17239 11 YILGTLILIALTICWYVYRQKES 33 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~ 33 (115)
++-++.+|++++|.-++..|+++
T Consensus 14 ~vTvVvaI~~vv~~I~~~~~k~k 36 (155)
T PF08496_consen 14 IVTVVVAILAVVGLIVAAAQKKK 36 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhccCC
Confidence 45566667777777788888777
No 97
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=66.94 E-value=59 Score=25.34 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17239 49 QRAELDLANLQKELERARQE 68 (115)
Q Consensus 49 q~AE~sL~dLQ~~Le~A~~e 68 (115)
...-.++.++..+++.+.+.
T Consensus 117 ~~l~~~~n~~~~~l~~~~~~ 136 (356)
T PRK10755 117 EAVTSALNQLVSRLTSTLDQ 136 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555554443
No 98
>PRK11281 hypothetical protein; Provisional
Probab=65.59 E-value=93 Score=30.68 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=45.1
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHhhh---------------------------hhHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy17239 6 SHVKDYILGTLILIALTICWYVYRQK---------------------------ESSQQHLRRMMKDMEGLQRAELDLANL 58 (115)
Q Consensus 6 n~~KD~~Lv~slvia~~GcWfAy~Qn---------------------------k~Sk~hl~kmmkDle~Lq~AE~sL~dL 58 (115)
+++.=.++++++++...+++||-..+ |...+++.+....++...+.++...++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~iq~~l~~~~~~~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L 85 (1113)
T PRK11281 6 HFVFRAFIAFLFLLLCLSSAFARAASNGDLPTEADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQL 85 (1113)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHhhhccCCCCCHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333456666666677777776433 112355556666666666777777778
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17239 59 QKELERARQEQENAASEKI 77 (115)
Q Consensus 59 Q~~Le~A~~e~~~v~~EK~ 77 (115)
+++++.|..+-+++..+..
T Consensus 86 ~k~l~~Ap~~l~~a~~~Le 104 (1113)
T PRK11281 86 KQQLAQAPAKLRQAQAELE 104 (1113)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 8888887777766666544
No 99
>KOG0980|consensus
Probab=65.21 E-value=49 Score=32.43 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17239 53 LDLANLQKELERARQEQENAASEKIKLERRLQEHQA 88 (115)
Q Consensus 53 ~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~ 88 (115)
.-+.|.|++++-+++.+..+..++.||...+.++..
T Consensus 445 ~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~ 480 (980)
T KOG0980|consen 445 RKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQR 480 (980)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999988887433
No 100
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=64.95 E-value=6.2 Score=22.61 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHHHHhHHHHHH
Q psy17239 7 HVKDYILGTLILIALTICWYVY 28 (115)
Q Consensus 7 ~~KD~~Lv~slvia~~GcWfAy 28 (115)
++-=+..++++++++.|+++.|
T Consensus 11 ~~g~~~~~~ll~~~lTG~~l~~ 32 (34)
T PF13172_consen 11 WLGLIAAIFLLLLALTGALLNF 32 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444677888999999999886
No 101
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=64.90 E-value=42 Score=24.10 Aligned_cols=21 Identities=5% Similarity=0.151 Sum_probs=9.0
Q ss_pred hhhhHHHHHHHHHHhhHHHHH
Q psy17239 30 QKESSQQHLRRMMKDMEGLQR 50 (115)
Q Consensus 30 Qnk~Sk~hl~kmmkDle~Lq~ 50 (115)
.....+.+.+....++..++.
T Consensus 27 ~~~~~~a~~~~~~~~l~~i~~ 47 (134)
T TIGR01710 27 FSQADKAKAQVAKAQIKALKN 47 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 102
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=64.59 E-value=5.9 Score=33.21 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhHHHHHHh
Q psy17239 11 YILGTLILIALTICWYVYR 29 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~ 29 (115)
+.|++++|+|++|.||.+.
T Consensus 117 ~~lv~~vvl~l~~~wwwq~ 135 (331)
T PRK10856 117 TWLVLFVVIGLTGAWWWQN 135 (331)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4666777888888887653
No 103
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=64.39 E-value=1.1e+02 Score=27.39 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=4.4
Q ss_pred HHHHHhHHHHH
Q psy17239 17 ILIALTICWYV 27 (115)
Q Consensus 17 lvia~~GcWfA 27 (115)
+++|++.+||.
T Consensus 8 ~iiG~~ig~~~ 18 (514)
T TIGR03319 8 LIVGLIIGYLL 18 (514)
T ss_pred HHHHHHHHHHH
Confidence 33444334443
No 104
>PRK01919 tatB sec-independent translocase; Provisional
Probab=64.14 E-value=71 Score=25.29 Aligned_cols=8 Identities=13% Similarity=-0.105 Sum_probs=4.6
Q ss_pred HHHHHHhh
Q psy17239 23 ICWYVYRQ 30 (115)
Q Consensus 23 GcWfAy~Q 30 (115)
|-|+.-.+
T Consensus 33 Gk~i~k~R 40 (169)
T PRK01919 33 GALFGRAQ 40 (169)
T ss_pred HHHHHHHH
Confidence 66765443
No 105
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=63.51 E-value=6.6 Score=23.87 Aligned_cols=18 Identities=28% Similarity=0.262 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhHHHHHH
Q psy17239 11 YILGTLILIALTICWYVY 28 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy 28 (115)
+++++.+++|+.|-|++-
T Consensus 23 ~il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 23 IILLILVLLAIFAPFISP 40 (56)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 578888899999988864
No 106
>KOG1962|consensus
Probab=63.39 E-value=79 Score=25.78 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 44 DMEGLQRAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 44 Dle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
--+.+..++..++..+++|+.|+.+...+...
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq 187 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQ 187 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666655544443
No 107
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=63.11 E-value=1.1 Score=35.86 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhHHHHHH
Q psy17239 11 YILGTLILIALTICWYVY 28 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy 28 (115)
++++++|+++.||.+|+|
T Consensus 163 ll~lllv~l~gGGa~yYf 180 (218)
T PF14283_consen 163 LLLLLLVALIGGGAYYYF 180 (218)
T ss_pred HHHHHHHHHhhcceEEEE
Confidence 444444444334444333
No 108
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=63.11 E-value=6.9 Score=30.51 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=12.2
Q ss_pred HHHHHHHHhHHHHHHhhhhh
Q psy17239 14 GTLILIALTICWYVYRQKES 33 (115)
Q Consensus 14 v~slvia~~GcWfAy~Qnk~ 33 (115)
++.||+| +..||||+|+|.
T Consensus 125 ~valvGA-vsSyiaYqkKKl 143 (169)
T PF12301_consen 125 VVALVGA-VSSYIAYQKKKL 143 (169)
T ss_pred HHHHHHH-HHHHHHHHhhcc
Confidence 3334444 446899999985
No 109
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=62.64 E-value=17 Score=26.02 Aligned_cols=20 Identities=20% Similarity=0.687 Sum_probs=10.2
Q ss_pred HHHHh-hhhhHHHHHHHHHHhh
Q psy17239 25 WYVYR-QKESSQQHLRRMMKDM 45 (115)
Q Consensus 25 WfAy~-Qnk~Sk~hl~kmmkDl 45 (115)
||.++ |+|..|.| .+|.+.|
T Consensus 33 f~~~RpqkK~~k~~-~~~~~~L 53 (106)
T PRK05585 33 FLIIRPQQKRQKEH-KKMLSSL 53 (106)
T ss_pred HHhccHHHHHHHHH-HHHHHhc
Confidence 33444 66655555 5555443
No 110
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=62.21 E-value=45 Score=22.39 Aligned_cols=42 Identities=12% Similarity=0.258 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhH----------HHHHHHHHHhhHHHHHHH
Q psy17239 11 YILGTLILIALTICWYVYRQKESS----------QQHLRRMMKDMEGLQRAE 52 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~S----------k~hl~kmmkDle~Lq~AE 52 (115)
+++++++++|+.|.|....-+... -..+.+|-.++...+...
T Consensus 14 ~~~~l~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (181)
T PF12729_consen 14 LIILLLLIVGIVGLYSLSQINQNVEEIYENNLPSIELLNDIRSNLQRIRRAL 65 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888765544433 334555555555555544
No 111
>PRK09458 pspB phage shock protein B; Provisional
Probab=61.76 E-value=15 Score=25.57 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHL 38 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl 38 (115)
+.|+.+++|-+=.|+-|+-++++..-+
T Consensus 10 liiF~ifVaPiWL~LHY~sk~~~~~~L 36 (75)
T PRK09458 10 LTIFVLFVAPIWLWLHYRSKRQGSQGL 36 (75)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCC
Confidence 456677778888899999877665433
No 112
>PRK01770 sec-independent translocase; Provisional
Probab=61.58 E-value=78 Score=24.90 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=20.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy17239 36 QHLRRMMKDMEGLQRAELDLANLQKELERA 65 (115)
Q Consensus 36 ~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A 65 (115)
..+++|+.+...=-.-|..+.++++.|.++
T Consensus 37 ~~~R~~~~~~k~e~~~E~~~~El~~~l~~~ 66 (171)
T PRK01770 37 RALRSLATTVQNELTQELKLQELQDSLKKV 66 (171)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345667777665555666677787777765
No 113
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=60.80 E-value=8.9 Score=23.30 Aligned_cols=16 Identities=25% Similarity=0.688 Sum_probs=5.8
Q ss_pred HHHHHHHHhHHHHHHh
Q psy17239 14 GTLILIALTICWYVYR 29 (115)
Q Consensus 14 v~slvia~~GcWfAy~ 29 (115)
++.++++++.+|+..+
T Consensus 6 ~~~~~~~~~~~~~~~~ 21 (70)
T PF00672_consen 6 LIILLLSLLLAWLLAR 21 (70)
T ss_dssp HHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 114
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=60.56 E-value=11 Score=23.63 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhh
Q psy17239 9 KDYILGTLILIALTICWYVYRQKES 33 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWfAy~Qnk~ 33 (115)
+=+.|+.++++-+|.|||||.=+++
T Consensus 12 ~~~~l~~~~~~Figiv~wa~~p~~k 36 (48)
T cd01324 12 DSWGLLYLALFFLGVVVWAFRPGRK 36 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4456677778889999999985443
No 115
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=60.17 E-value=15 Score=24.71 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=18.5
Q ss_pred CchHHHHHHHHHHHHHh-------HHHHHHhhhhhHH
Q psy17239 6 SHVKDYILGTLILIALT-------ICWYVYRQKESSQ 35 (115)
Q Consensus 6 n~~KD~~Lv~slvia~~-------GcWfAy~Qnk~Sk 35 (115)
.++--++|.+|.+|..| |.|+-+.+++.++
T Consensus 7 ~~mtriVLLISfiIlfgRl~Y~~I~a~~hHq~k~~a~ 43 (59)
T PF11119_consen 7 SRMTRIVLLISFIILFGRLIYSAIGAWVHHQDKKQAQ 43 (59)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcc
Confidence 34555677777776666 6666655555554
No 116
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=60.14 E-value=8.1 Score=29.05 Aligned_cols=15 Identities=13% Similarity=0.344 Sum_probs=9.3
Q ss_pred HHHHhHHHHHHhhhh
Q psy17239 18 LIALTICWYVYRQKE 32 (115)
Q Consensus 18 via~~GcWfAy~Qnk 32 (115)
++|.+|.||...++.
T Consensus 32 ~~~g~~~~f~l~~~~ 46 (170)
T PRK05696 32 LGGGGAAWFFMGSSD 46 (170)
T ss_pred HHHHHHHHhhhcCCC
Confidence 334467888776543
No 117
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=59.99 E-value=66 Score=23.56 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=22.7
Q ss_pred HHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 37 HLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 37 hl~kmmkDle~L-q~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
.|...+.+.+.. ..|+..+.+.++.|..|+.+.+....+
T Consensus 43 ~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~ 82 (164)
T PRK14471 43 SIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKE 82 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 345666667777788887776555444
No 118
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=59.97 E-value=69 Score=23.80 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=33.0
Q ss_pred HHHHHHHHhHHHHHHhhhh----hHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 14 GTLILIALTICWYVYRQKE----SSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 14 v~slvia~~GcWfAy~Qnk----~Sk~hl~kmmkDle~L-q~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
+-.+|+.++..||+|.==+ .-+..|...+.+.+.+ ..|+..+.+.+++|+.|+.+-.....+
T Consensus 27 inflIl~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~ 93 (174)
T PRK07352 27 INLAIVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRAD 93 (174)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455666653211 1123344444444433 356777777778888877766554444
No 119
>PRK10364 sensor protein ZraS; Provisional
Probab=59.94 E-value=62 Score=26.40 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=11.3
Q ss_pred HHHHhHHHHHHhhhhhHHHHHHHHH
Q psy17239 18 LIALTICWYVYRQKESSQQHLRRMM 42 (115)
Q Consensus 18 via~~GcWfAy~Qnk~Sk~hl~kmm 42 (115)
++++.++||.+++-+.....+..-+
T Consensus 204 l~~~~~~~~~~~~~~~~~~~l~~~~ 228 (457)
T PRK10364 204 LLASLLAFFWYRRYLRSRQLLQDEM 228 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555444444443333
No 120
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=59.85 E-value=67 Score=23.62 Aligned_cols=56 Identities=20% Similarity=0.359 Sum_probs=37.7
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q psy17239 29 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAA---SEKIKLERRLQ 84 (115)
Q Consensus 29 ~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~---~EK~~LE~kl~ 84 (115)
.++..+..-|-++|+..+.++.....+..|+.++..-+..+.+.. +||-.--.+|+
T Consensus 44 ~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~ 102 (120)
T PF12325_consen 44 AERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELR 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 455666677777888888888877777777777777777766654 34444434443
No 121
>COG5393 Predicted membrane protein [Function unknown]
Probab=59.79 E-value=11 Score=28.80 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=24.4
Q ss_pred CCCCCchH--HHHHHHHHHHHHhHHHHHHhhhhhHH
Q psy17239 2 INSTSHVK--DYILGTLILIALTICWYVYRQKESSQ 35 (115)
Q Consensus 2 ~~~~n~~K--D~~Lv~slvia~~GcWfAy~Qnk~Sk 35 (115)
+++.++|. =...++++++|.+||-+-.+|.++|-
T Consensus 76 f~~tyRl~a~~a~~~vl~vl~~i~ciW~lrks~~s~ 111 (131)
T COG5393 76 FDPTYRLNAMIATTAVLLVLALIGCIWTLRKSRKST 111 (131)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 34555552 23567788899999988888888875
No 122
>TIGR02887 spore_ger_x_C germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc.
Probab=59.74 E-value=4.1 Score=33.11 Aligned_cols=15 Identities=47% Similarity=0.820 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhHHH
Q psy17239 11 YILGTLILIALTICW 25 (115)
Q Consensus 11 ~~Lv~slvia~~GcW 25 (115)
+++++++++.+.|||
T Consensus 5 ~l~ll~~~~lLtGCw 19 (371)
T TIGR02887 5 ILLLLLALLLLTGCW 19 (371)
T ss_pred hHHHHHHHHHHCCcC
Confidence 455555666678888
No 123
>KOG3653|consensus
Probab=59.54 E-value=8.8 Score=35.08 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHHHHHHhhhhhHHH
Q psy17239 13 LGTLILIALTICWYVYRQKESSQQ 36 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~Qnk~Sk~ 36 (115)
++.++++-|++|+++|+|.|.++.
T Consensus 163 ~v~~l~~lvi~~~~~~r~~k~~~~ 186 (534)
T KOG3653|consen 163 LVSLLAALVILAFLGYRQRKNARE 186 (534)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 355566667889999999999997
No 124
>PF12963 DUF3852: Protein of unknown function (DUF3852); InterPro: IPR024330 This entry represents a family of uncharacterised bacterial proteins found by clustering human gut metagenomic sequences [].
Probab=59.41 E-value=12 Score=27.95 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhh
Q psy17239 8 VKDYILGTLILIALTICWYVYRQK 31 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcWfAy~Qn 31 (115)
.=|++|+++...=+|-+||.|+-|
T Consensus 57 aidlILav~ffvKl~~ayfdYrKh 80 (111)
T PF12963_consen 57 AIDLILAVFFFVKLGMAYFDYRKH 80 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 359999999999999999999855
No 125
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=59.39 E-value=54 Score=25.68 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17239 70 ENAASEKIKLERRLQE 85 (115)
Q Consensus 70 ~~v~~EK~~LE~kl~~ 85 (115)
.....+..+||+++.+
T Consensus 127 ~~~e~~i~~Le~ki~e 142 (190)
T PF05266_consen 127 KELESEIKELEMKILE 142 (190)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3334444444444444
No 126
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=59.04 E-value=66 Score=23.25 Aligned_cols=58 Identities=31% Similarity=0.485 Sum_probs=31.7
Q ss_pred HHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy17239 37 HLRRMMKDMEGLQ----RAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLK 97 (115)
Q Consensus 37 hl~kmmkDle~Lq----~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~ 97 (115)
-+.++..|++.|+ +.+..+.+++.++..++...+....+-..++..++. .+.+..++.
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~---~kee~~klk 121 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ---EKEELQKLK 121 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3455556666543 445555566666666666666666665555555544 344444444
No 127
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=59.02 E-value=38 Score=26.14 Aligned_cols=47 Identities=21% Similarity=0.133 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHH-HHHHH----hhHHHHHHHHHHH
Q psy17239 10 DYILGTLILIALTICWYVYRQKESSQQHL-RRMMK----DMEGLQRAELDLA 56 (115)
Q Consensus 10 D~~Lv~slvia~~GcWfAy~Qnk~Sk~hl-~kmmk----Dle~Lq~AE~sL~ 56 (115)
-.++++..++|+.|||..|...|.....+ .+.-+ +=+.+.+||.-++
T Consensus 57 ~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~~~~~~l~~a~~~f~ 108 (208)
T COG0586 57 WLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRLLKRKKLDKAELLFE 108 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhccCCHHHHHHHHHHHH
Confidence 46788889999999999999998886443 33333 3556666665543
No 128
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=58.96 E-value=13 Score=26.72 Aligned_cols=7 Identities=0% Similarity=-0.197 Sum_probs=2.9
Q ss_pred HhHHHHH
Q psy17239 21 LTICWYV 27 (115)
Q Consensus 21 ~~GcWfA 27 (115)
+++||++
T Consensus 17 ~~~~~~~ 23 (130)
T PF12273_consen 17 FLFYCHN 23 (130)
T ss_pred HHHHHHH
Confidence 3444443
No 129
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=58.89 E-value=75 Score=23.84 Aligned_cols=41 Identities=12% Similarity=0.306 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 35 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 35 k~hl~kmmkDle~L-q~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
+..|...+.|-+.+ ..|+..+.+-+++|+.|+.+-+....+
T Consensus 60 ~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 60 AEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666655 567777888888888888776655444
No 130
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=58.80 E-value=1.4e+02 Score=26.83 Aligned_cols=13 Identities=0% Similarity=0.049 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q psy17239 50 RAELDLANLQKEL 62 (115)
Q Consensus 50 ~AE~sL~dLQ~~L 62 (115)
..-.++..++..+
T Consensus 389 ~l~~~~~~~~~~l 401 (968)
T TIGR02956 389 HMGRAIEAFRDTA 401 (968)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555555
No 131
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=58.71 E-value=51 Score=24.11 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHH
Q psy17239 9 KDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEG 47 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~ 47 (115)
-||-....+++++++.+|--.+++.++..+++++.-|..
T Consensus 69 ~nwavgsF~l~s~~~we~Cr~~r~~~~~~~~~~~e~~~~ 107 (118)
T PF12597_consen 69 ANWAVGSFFLGSLGSWEYCRYNRRKERQQMKRAVEAMQE 107 (118)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667777776666555555666666666666654443
No 132
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=58.47 E-value=11 Score=29.22 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=6.8
Q ss_pred HHHHHHHHhHHHHHH
Q psy17239 14 GTLILIALTICWYVY 28 (115)
Q Consensus 14 v~slvia~~GcWfAy 28 (115)
++++++++|+.||.+
T Consensus 27 ~llll~~~G~~~~~~ 41 (182)
T PRK08455 27 VVLLLLIVGVIAMLL 41 (182)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444445544
No 133
>PF14163 SieB: Superinfection exclusion protein B
Probab=58.06 E-value=37 Score=24.70 Aligned_cols=34 Identities=12% Similarity=0.292 Sum_probs=17.6
Q ss_pred HHHHHHHHHhHHHHH-----HhhhhhHHHHHHHHHHhhH
Q psy17239 13 LGTLILIALTICWYV-----YRQKESSQQHLRRMMKDME 46 (115)
Q Consensus 13 Lv~slvia~~GcWfA-----y~Qnk~Sk~hl~kmmkDle 46 (115)
+.++.+++.+.-|++ +.++|..+..++++.++|+
T Consensus 42 ~s~s~li~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~Lt 80 (151)
T PF14163_consen 42 FSVSYLIAQLLSFIYKEAKDRYQRKRKKKKIEKKLNSLT 80 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334556665555552 2455555555555544443
No 134
>PF10721 DUF2514: Protein of unknown function (DUF2514); InterPro: IPR019659 This protein family is conserved in bacteria and some viruses. The function is not known.
Probab=58.02 E-value=82 Score=24.06 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhh
Q psy17239 8 VKDYILGTLILIALTICWYVYRQK 31 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcWfAy~Qn 31 (115)
||=+++|+ |+++..+|-+|...
T Consensus 1 W~~l~~vl--lla~~~~~g~y~~G 22 (162)
T PF10721_consen 1 WKQLAIVL--LLAAALLWGAYAHG 22 (162)
T ss_pred CHHHHHHH--HHHHHHHHHHHHhc
Confidence 34444443 33444444445443
No 135
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=58.01 E-value=58 Score=22.27 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=28.0
Q ss_pred HHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 36 QHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 36 ~hl~kmmkDle~L-q~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
..|...+.+.+.+ ..|+..+.+..++|..|+.+......+
T Consensus 33 ~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~ 73 (132)
T PF00430_consen 33 AKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEE 73 (132)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667776654 457777888888888888877665554
No 136
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=57.64 E-value=14 Score=24.44 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=25.8
Q ss_pred HHHHHHHHhHHHHHHhhhhhHHHHHHHHHH
Q psy17239 14 GTLILIALTICWYVYRQKESSQQHLRRMMK 43 (115)
Q Consensus 14 v~slvia~~GcWfAy~Qnk~Sk~hl~kmmk 43 (115)
++++|.|++-+||-|....+.-..+.++..
T Consensus 5 i~Llv~GivLl~~G~~~~~S~~s~~s~~~T 34 (59)
T PF11381_consen 5 IALLVGGIVLLYFGYQASDSLGSQVSRAFT 34 (59)
T ss_pred ehHHHHHHHHHHhhhhhhhhHHHHHHHHhc
Confidence 578999999999999999998888887753
No 137
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=57.62 E-value=50 Score=21.45 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhh
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDM 45 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDl 45 (115)
+++=.++++++|+.||=.-.+..+..|++.+.|+
T Consensus 5 ~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~~~~ 38 (74)
T PF12732_consen 5 FLAGAAAGAAAGLLFAPKSGKETREKLKDKAEDL 38 (74)
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 3455677888889999888888888888877765
No 138
>PRK06298 type III secretion system protein; Validated
Probab=57.34 E-value=48 Score=28.31 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=36.4
Q ss_pred HHHHHHHHhHHHHH----HhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy17239 14 GTLILIALTICWYV----YRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERAR 66 (115)
Q Consensus 14 v~slvia~~GcWfA----y~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~ 66 (115)
++++++|++=++|- ..+-|=||+-+++=+||.||=..-......+|.++...+
T Consensus 193 ~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~rrR~~~re~~~~~ 249 (356)
T PRK06298 193 IFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQIAQEIAYED 249 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhH
Confidence 34445555555444 445567899999999999998777777777776665433
No 139
>PRK09108 type III secretion system protein HrcU; Validated
Probab=57.26 E-value=49 Score=28.20 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=37.6
Q ss_pred HHHHHHHHHhHHHHHH----hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy17239 13 LGTLILIALTICWYVY----RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERAR 66 (115)
Q Consensus 13 Lv~slvia~~GcWfAy----~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~ 66 (115)
+++++|+|++=++|-+ .+.|=||+-+++=+||.||=..-......+|.++...+
T Consensus 193 ~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~~re~a~~~ 250 (353)
T PRK09108 193 AGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRLARELAFAP 250 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhH
Confidence 3445566666665544 44566899999999999998777777777776665443
No 140
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=56.97 E-value=49 Score=28.30 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=36.2
Q ss_pred HHHHHHHHHhHHHHHHh----hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy17239 13 LGTLILIALTICWYVYR----QKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 65 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~----Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A 65 (115)
+++++++|++=++|-+. +.|=||+-+++=+||.||=..-......+|.++...
T Consensus 200 ~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~Rq~~re~~~~ 256 (358)
T PRK13109 200 AIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARLRSLAQDRARN 256 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 44555666666655544 456689999999999999777666666666665533
No 141
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=56.91 E-value=37 Score=28.18 Aligned_cols=45 Identities=31% Similarity=0.465 Sum_probs=25.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 38 LRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 38 l~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+....+.++.| +.+-..+.++|+..+.+...+..|...||.+..+
T Consensus 45 ~~~~~~el~~l---e~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 45 IEELEEELEKL---EQEEEELLQELEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp -HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 4444455566666666666666666666665554
No 142
>PF14143 YrhC: YrhC-like protein
Probab=56.67 E-value=26 Score=24.10 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHH
Q psy17239 8 VKDYILGTLILIALTICWYVYRQKESSQQHLRR 40 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~k 40 (115)
.+=.+++..+++.++|.||-+++-+..++.+.+
T Consensus 38 ~~~~~m~~~~~~~l~~a~~f~~rs~~~~~~L~E 70 (72)
T PF14143_consen 38 AQKYIMMGAICIFLAGAFLFFRRSKKYQKKLEE 70 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355667778888999999999998888877654
No 143
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=56.65 E-value=65 Score=22.42 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17239 61 ELERARQEQENAASEK 76 (115)
Q Consensus 61 ~Le~A~~e~~~v~~EK 76 (115)
.-+.|+.+-......+
T Consensus 43 dW~~A~~~~~~l~~~W 58 (121)
T PF14276_consen 43 DWEKAYKETEELEKEW 58 (121)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 144
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=56.52 E-value=54 Score=21.49 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 51 AELDLANLQKELERARQEQENAASEK 76 (115)
Q Consensus 51 AE~sL~dLQ~~Le~A~~e~~~v~~EK 76 (115)
-|+-|..|-++|+.|+.+-+....+-
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~ 55 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARA 55 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666677766666555544443
No 145
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=55.81 E-value=23 Score=24.35 Aligned_cols=16 Identities=13% Similarity=0.580 Sum_probs=8.7
Q ss_pred hhhhhHHHHHHHHHHhh
Q psy17239 29 RQKESSQQHLRRMMKDM 45 (115)
Q Consensus 29 ~Qnk~Sk~hl~kmmkDl 45 (115)
.|+|..|.| ++|...|
T Consensus 23 pqkK~~k~~-~~m~~~L 38 (84)
T TIGR00739 23 PQRKRRKAH-KKLIESL 38 (84)
T ss_pred hHHHHHHHH-HHHHHhC
Confidence 366665555 4555443
No 146
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=55.67 E-value=33 Score=23.89 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhH
Q psy17239 11 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDME 46 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle 46 (115)
.++...+-+.++|||..+. ..|-++.+++++
T Consensus 57 ~~~~~~l~~lt~~l~~~~~-----~~~~~~~~~~le 87 (118)
T PF10256_consen 57 NIIENILGCLTLGLSSLCF-----KTHYKRKLRELE 87 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 3444555556688887665 445555444444
No 147
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=55.35 E-value=47 Score=24.33 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q psy17239 52 ELDLANLQKELERAR--QEQENAASEKIKLERRLQE 85 (115)
Q Consensus 52 E~sL~dLQ~~Le~A~--~e~~~v~~EK~~LE~kl~~ 85 (115)
+-+..+||.+|..++ +.-++.+..+++++.+|+.
T Consensus 62 ~Rev~~L~~~L~~~~~~e~LE~~M~kaqe~~e~Lrs 97 (106)
T PF03528_consen 62 EREVAKLQRRLREGQELENLEKSMKKAQEDEEKLRS 97 (106)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchHHHHHHHHHHHHhHHHHHHH
Confidence 344778888888877 4444444444444444443
No 148
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=55.09 E-value=31 Score=30.13 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=37.5
Q ss_pred HHHHHHHHHhHHHHHHhh----hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy17239 13 LGTLILIALTICWYVYRQ----KESSQQHLRRMMKDMEGLQRAELDLANLQKELE 63 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~Q----nk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le 63 (115)
.+..+++++.-.||-|.| =|-||.-++|=-|||||=......-..+|.+++
T Consensus 192 ~~~ylv~sv~Dy~fqr~~~~K~lkMSKdEVkRE~Kd~eG~PeiKskRRq~~~Eiq 246 (349)
T COG4792 192 AVGYLVFSVADYAFQRYQILKELKMSKDEVKREYKDMEGDPEIKSKRRQLHSEIQ 246 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcccCCchhhHHHHHHHHHHh
Confidence 344677788888887765 467999999999999997766665555555554
No 149
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=54.99 E-value=29 Score=25.35 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhHHHHHH--hhhhhHHHHHHHHHHhh
Q psy17239 11 YILGTLILIALTICWYVY--RQKESSQQHLRRMMKDM 45 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy--~Qnk~Sk~hl~kmmkDl 45 (115)
+++++.+++.+++.||.. .|+|..|.| .+|+..|
T Consensus 4 ~~~ll~lv~i~~i~yF~~iRPQkKr~K~~-~~m~~~L 39 (109)
T PRK05886 4 LVLFLPFLLIMGGFMYFASRRQRKAMQAT-IDLHESL 39 (109)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHhc
Confidence 344444444445556554 355554444 4555443
No 150
>PF11845 DUF3365: Protein of unknown function (DUF3365); InterPro: IPR021796 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 198 to 657 amino acids in length.
Probab=54.43 E-value=57 Score=23.75 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=15.0
Q ss_pred HHHHHhHHHHHHhhhhhHHHHHHHHHH
Q psy17239 17 ILIALTICWYVYRQKESSQQHLRRMMK 43 (115)
Q Consensus 17 lvia~~GcWfAy~Qnk~Sk~hl~kmmk 43 (115)
+++.+++.|++..+++.+...+....+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~a~ 34 (188)
T PF11845_consen 8 VILFLALFISYSQQQKQAEEQAREQAR 34 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666666655554433
No 151
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=54.18 E-value=19 Score=30.43 Aligned_cols=42 Identities=31% Similarity=0.505 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy17239 54 DLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKS 98 (115)
Q Consensus 54 sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~ 98 (115)
.|+++|.+++.-|+.-....+|+-.||.+++. ..++-.+|++
T Consensus 157 eleele~e~ee~~erlk~le~E~s~LeE~~~~---l~~ev~~L~~ 198 (290)
T COG4026 157 ELEELEAEYEEVQERLKRLEVENSRLEEMLKK---LPGEVYDLKK 198 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---chhHHHHHHH
Confidence 45667777777777777777788888877766 3444444443
No 152
>PF09945 DUF2177: Predicted membrane protein (DUF2177); InterPro: IPR018687 This family of putative membrane proteins has no known function.
Probab=54.18 E-value=32 Score=25.72 Aligned_cols=40 Identities=15% Similarity=0.389 Sum_probs=35.7
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhh
Q psy17239 6 SHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDM 45 (115)
Q Consensus 6 n~~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDl 45 (115)
++++-++.+..+.+++=.+|.-..-++..+.||..+|+|-
T Consensus 3 ~~~~~yl~~~~vfl~lD~iWL~~va~~~Y~~~ig~ll~~~ 42 (128)
T PF09945_consen 3 KYLIAYLATLVVFLVLDAIWLGFVAKRFYRPHIGDLLADQ 42 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4667788888888999999999999999999999999883
No 153
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=54.16 E-value=43 Score=24.58 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHhH
Q psy17239 10 DYILGTLILIALTI 23 (115)
Q Consensus 10 D~~Lv~slvia~~G 23 (115)
.|++|+.|++-|.|
T Consensus 8 ElliIlvVallvfG 21 (108)
T PRK14858 8 ELIVILVIALIVIG 21 (108)
T ss_pred HHHHHHHHHHHhcC
Confidence 34444444444443
No 154
>PRK09040 hypothetical protein; Provisional
Probab=54.07 E-value=1e+02 Score=24.06 Aligned_cols=33 Identities=18% Similarity=0.012 Sum_probs=25.1
Q ss_pred CCCch---HHHHHHHHHHHHHhHHHHHHhhhhhHHH
Q psy17239 4 STSHV---KDYILGTLILIALTICWYVYRQKESSQQ 36 (115)
Q Consensus 4 ~~n~~---KD~~Lv~slvia~~GcWfAy~Qnk~Sk~ 36 (115)
..+|| -|++-+++.+..++-+|++..|=..++.
T Consensus 11 ~~~~W~s~sDLMs~Lm~iFlli~v~~~~~~~~~~~~ 46 (214)
T PRK09040 11 TAPVWAVFGDLMSVLLGAFVLILVGVIGVQLELSSK 46 (214)
T ss_pred CCCeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 8999988888888899988777655554
No 155
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=53.69 E-value=96 Score=23.51 Aligned_cols=55 Identities=29% Similarity=0.410 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHHhhHHHHH----HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 31 KESSQQHLRRMMKDMEGLQR----AE--------------LDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 31 nk~Sk~hl~kmmkDle~Lq~----AE--------------~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+-+.+.||-.|=+||+..+. ++ ..+..|-..|.....+-.++..||.+|.+.+.+
T Consensus 19 ~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 19 KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33557778777777765442 11 222223333333555555566666666666655
No 156
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=53.64 E-value=1.8e+02 Score=26.60 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 49 QRAELDLANLQKELERARQEQENAASEKIKLERRLQ 84 (115)
Q Consensus 49 q~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~ 84 (115)
.-|+......--+-++++.|-+++-.|++-.+.++.
T Consensus 91 ~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~ 126 (499)
T COG4372 91 GTAQGEKRAAETEREAARSELQKARQEREAVRQELA 126 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333344444444444443333
No 157
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=53.47 E-value=35 Score=27.41 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy17239 56 ANLQKELERARQ 67 (115)
Q Consensus 56 ~dLQ~~Le~A~~ 67 (115)
..|.+++..|++
T Consensus 36 ~~Leek~k~aee 47 (246)
T PF00769_consen 36 EELEEKLKQAEE 47 (246)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 158
>PF07006 DUF1310: Protein of unknown function (DUF1310); InterPro: IPR010738 This family consists of several hypothetical proteins of around 125 residues in length. Members of this family seem to be specific to Listeria and Streptococcus species. The function of this family is unknown.
Probab=53.33 E-value=8.2 Score=28.54 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=10.3
Q ss_pred HHHHHHHHhHHHHHHhhhh
Q psy17239 14 GTLILIALTICWYVYRQKE 32 (115)
Q Consensus 14 v~slvia~~GcWfAy~Qnk 32 (115)
++++++++||||+...+++
T Consensus 10 ~l~~i~~~~g~~~~~~~~~ 28 (122)
T PF07006_consen 10 ILLVIIGIGGGFYMDQQKE 28 (122)
T ss_pred HHHHHHhheeEEEEEEhHH
Confidence 3444555667766554444
No 159
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=53.20 E-value=38 Score=24.32 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=20.1
Q ss_pred HHHHHHhHHHHHHhhhhhHHHHHHHHHH
Q psy17239 16 LILIALTICWYVYRQKESSQQHLRRMMK 43 (115)
Q Consensus 16 slvia~~GcWfAy~Qnk~Sk~hl~kmmk 43 (115)
.+++-+.=.-|.|.|-|+...++++|-+
T Consensus 8 ~~~~~~lQ~~l~~~Qik~f~~~~~~l~~ 35 (109)
T PF06923_consen 8 LVIAWLLQILLGWFQIKNFNKAYKELRK 35 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344456789999999999988764
No 160
>PF03203 MerC: MerC mercury resistance protein
Probab=53.17 E-value=18 Score=25.48 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhHH
Q psy17239 9 KDYILGTLILIALTICWYVYRQKESSQ 35 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWfAy~Qnk~Sk 35 (115)
-=+++++.+.+|+.+.|+.|+++|+..
T Consensus 40 h~~ll~~~~~i~~~al~~g~r~h~~~~ 66 (116)
T PF03203_consen 40 HWLLLYLFLPIALLALFRGYRRHRRWL 66 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchH
Confidence 336778899999999999999988543
No 161
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=53.10 E-value=79 Score=22.34 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 52 ELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 52 E~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
++.|.+|.++++.-.-..+....-|..|+|+|=+
T Consensus 42 r~qL~ELe~d~~~G~l~~~e~~~~~~El~rrLL~ 75 (117)
T TIGR03142 42 RDRLAELERDLAEGLLDEAEAEAARAELQRRLLA 75 (117)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3445555555443221222333446677777654
No 162
>PRK10847 hypothetical protein; Provisional
Probab=53.08 E-value=27 Score=27.03 Aligned_cols=27 Identities=7% Similarity=0.038 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHH
Q psy17239 11 YILGTLILIALTICWYVYRQKESSQQH 37 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~h 37 (115)
.+++++.++++.|+|.+|..-|..-.+
T Consensus 73 ~~~~~a~~Ga~lG~~i~Y~lGr~~G~~ 99 (219)
T PRK10847 73 MMVALMLIAAIVGDAVNYTIGRLFGEK 99 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 346677899999999999999875444
No 163
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=53.07 E-value=73 Score=21.95 Aligned_cols=16 Identities=25% Similarity=0.729 Sum_probs=13.2
Q ss_pred cccccHHHHHHHHHhhC
Q psy17239 99 SSAFSDLEVCQLKQEIE 115 (115)
Q Consensus 99 ~~~~sdlEv~~LkqEie 115 (115)
+..|.+ ||.+|+.|++
T Consensus 59 K~~YEe-EI~rLr~eLe 74 (79)
T PF08581_consen 59 KQQYEE-EIARLRRELE 74 (79)
T ss_dssp HHHHHH-HHHHHHHHHC
T ss_pred HHHHHH-HHHHHHHHHH
Confidence 448888 9999999885
No 164
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=52.93 E-value=1.4e+02 Score=27.83 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccccccccc-cccHHHH
Q psy17239 34 SQQHLRRMMKDM----EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQA-LQGDASDLKSSS-AFSDLEV 107 (115)
Q Consensus 34 Sk~hl~kmmkDl----e~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~-~~~~~~~l~~~~-~~sdlEv 107 (115)
-+.|++.+..-+ +.|..++....+++.+-++..+..+.+..--..|.+++..... .....|.|+..+ ...+ |+
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~-EL 641 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKK-EL 641 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH-HH
Confidence 345555444433 3566666666666666555555555555556677777776433 444455566532 2233 55
Q ss_pred HHHHHh
Q psy17239 108 CQLKQE 113 (115)
Q Consensus 108 ~~LkqE 113 (115)
.+++.+
T Consensus 642 ~~~~~~ 647 (717)
T PF10168_consen 642 ERMKDQ 647 (717)
T ss_pred HHHHHH
Confidence 555433
No 165
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=52.84 E-value=10 Score=27.92 Aligned_cols=14 Identities=7% Similarity=-0.183 Sum_probs=8.6
Q ss_pred HhHHHHHHhhhhhH
Q psy17239 21 LTICWYVYRQKESS 34 (115)
Q Consensus 21 ~~GcWfAy~Qnk~S 34 (115)
.||.||.+.+....
T Consensus 20 g~~~~~~~~~~~~~ 33 (142)
T PRK07718 20 GTAALVLVMGFSEA 33 (142)
T ss_pred HHHHHhhhcccCCc
Confidence 35677777765433
No 166
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=52.30 E-value=26 Score=21.85 Aligned_cols=9 Identities=11% Similarity=0.375 Sum_probs=3.6
Q ss_pred HHHHhHHHH
Q psy17239 18 LIALTICWY 26 (115)
Q Consensus 18 via~~GcWf 26 (115)
.+++++.|+
T Consensus 22 ~igm~~~~~ 30 (42)
T PF11346_consen 22 TIGMGVFFI 30 (42)
T ss_pred HHHHHHHHH
Confidence 334444433
No 167
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=52.15 E-value=1.3e+02 Score=24.50 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=34.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 36 QHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLE 80 (115)
Q Consensus 36 ~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE 80 (115)
.||.+==.+|-.|..+.++|..+..+.+.++..-.....+.+.+.
T Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (239)
T TIGR03789 84 QHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQLL 128 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777789999999999999998888888777666655544443
No 168
>COG4726 PilX Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.06 E-value=75 Score=25.76 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELE 63 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le 63 (115)
+|+++-++|+++.=-+.-|.|-|-.-+-+-+ ..|.||.+|.|=..++.
T Consensus 23 ~LvvltLl~l~~~r~~llqeRiSaN~~D~~l----AfqaAEaaLr~~E~~i~ 70 (196)
T COG4726 23 VLVVLTLLGLAAARSVLLQERISANERDRSL----AFQAAEAALREGELQIN 70 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHh
Confidence 4555556677777778888887766655543 47888888876544443
No 169
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=51.95 E-value=1.2e+02 Score=24.12 Aligned_cols=19 Identities=0% Similarity=0.167 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17239 50 RAELDLANLQKELERARQE 68 (115)
Q Consensus 50 ~AE~sL~dLQ~~Le~A~~e 68 (115)
.--.+|..|..++++..++
T Consensus 210 ~L~~~~n~m~~~l~~~~~~ 228 (435)
T PRK09467 210 SVTRAFNQMAAGIKQLEDD 228 (435)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555544433
No 170
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=51.89 E-value=14 Score=22.37 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=11.7
Q ss_pred HhHHHHHHhhhhhHHHHHHHH
Q psy17239 21 LTICWYVYRQKESSQQHLRRM 41 (115)
Q Consensus 21 ~~GcWfAy~Qnk~Sk~hl~km 41 (115)
.|+.+|+| |+.|.|+++|
T Consensus 11 ~ga~f~~f---KKyQ~~vnqa 28 (33)
T PF10855_consen 11 GGAAFYGF---KKYQNHVNQA 28 (33)
T ss_pred hhHHHHHH---HHHHHHHhcC
Confidence 34456666 5667888876
No 171
>TIGR01708 typeII_sec_gspH general secretion pathway protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=51.88 E-value=61 Score=22.87 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=5.5
Q ss_pred HHHHHHHHHhHH
Q psy17239 13 LGTLILIALTIC 24 (115)
Q Consensus 13 Lv~slvia~~Gc 24 (115)
||+++++|+...
T Consensus 12 lvvlaIiail~~ 23 (143)
T TIGR01708 12 LVVLAIMGLVAA 23 (143)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 172
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=51.55 E-value=68 Score=27.27 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=38.1
Q ss_pred HHHHHHHHhHHH----HHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy17239 14 GTLILIALTICW----YVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERAR 66 (115)
Q Consensus 14 v~slvia~~GcW----fAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~ 66 (115)
++++++|++=++ ...++.|=||+-+++=+||.||=..-......+|.++...+
T Consensus 192 ~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR~~~re~a~~~ 248 (347)
T TIGR00328 192 LLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQMQREAARRR 248 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhh
Confidence 344444444444 44556677999999999999998888888888887776544
No 173
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=51.53 E-value=15 Score=20.77 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=18.6
Q ss_pred CCchHHHHHHHHHHHHHhHHHH
Q psy17239 5 TSHVKDYILGTLILIALTICWY 26 (115)
Q Consensus 5 ~n~~KD~~Lv~slvia~~GcWf 26 (115)
|.+.-|+.-+..+|.++.|.+.
T Consensus 5 H~w~~~i~al~~lv~~iTGl~l 26 (27)
T PF03929_consen 5 HKWFGDIFALFMLVFAITGLIL 26 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5567899999999999999874
No 174
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=51.38 E-value=58 Score=24.88 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc-cccccHHHHHHH
Q psy17239 32 ESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKS-SSAFSDLEVCQL 110 (115)
Q Consensus 32 k~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~-~~~~sdlEv~~L 110 (115)
|.--++|.++|++. +.+.++.-|+.....+......-..+|+=....+. ++..-+.. ...|.+.+.++|
T Consensus 59 rRQ~qyIGKLmR~~--------d~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~--~~~~al~e~~~~~p~~D~Q~L 128 (157)
T PF04751_consen 59 RRQLQYIGKLMREE--------DPEAIRAALDALKNKSQQETARFHRLERWRDRLIA--DDDSALTEFLAEYPDADRQQL 128 (157)
T ss_dssp HHHHHHHHHHGGGS---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--S-HHHHHHHHHHSTTS-HHHH
T ss_pred HHHHHHHHHHHHhC--------CHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHCChhhHHHH
Confidence 44456789999988 45566777777776666665555667765554333 33333433 445556667777
Q ss_pred HH
Q psy17239 111 KQ 112 (115)
Q Consensus 111 kq 112 (115)
+|
T Consensus 129 Rq 130 (157)
T PF04751_consen 129 RQ 130 (157)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 175
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=51.36 E-value=73 Score=21.47 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=49.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 1 MINSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLE 80 (115)
Q Consensus 1 ~~~~~n~~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE 80 (115)
|+++++.+.|+.=.+.=.++.++. +.-=-.++.+..+.+...+|+--.|- .|.-++..|.++++........-..||
T Consensus 1 M~~~~~~~d~~~~~~~~~~~~~~~-~~~e~e~~~r~~l~~~l~kldlVtRE--EFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 1 MQDPNKIFDDLAKQISEALPAAQG-PREEIEKNIRARLQSALSKLDLVTRE--EFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred CCCchhHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHCCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677778888876555444443321 22223466778888888888877764 477778888888877665544444444
No 176
>PF09933 DUF2165: Predicted small integral membrane protein (DUF2165); InterPro: IPR018681 This family of various hypothetical prokaryotic proteins has no known function.
Probab=51.29 E-value=18 Score=27.95 Aligned_cols=16 Identities=13% Similarity=0.273 Sum_probs=14.1
Q ss_pred HHHHHhHHHHHHhhhh
Q psy17239 17 ILIALTICWYVYRQKE 32 (115)
Q Consensus 17 lvia~~GcWfAy~Qnk 32 (115)
..+++||=||.+-|++
T Consensus 119 gF~~iGGeWF~MWqs~ 134 (160)
T PF09933_consen 119 GFMVIGGEWFGMWQSQ 134 (160)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 4578999999999987
No 177
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=51.22 E-value=82 Score=29.43 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 35 QQHLRRMMKDMEGLQ-RAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 35 k~hl~kmmkDle~Lq-~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+..+.+++.+|+... ..|+...++.+.++.++..++....+...|+++.++
T Consensus 510 ~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 561 (771)
T TIGR01069 510 KEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERN 561 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446888888887644 356666666666666666666666666666655544
No 178
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=51.17 E-value=1e+02 Score=23.13 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=37.6
Q ss_pred HHHHHHHHHhHHHHHHhhhh----hHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 13 LGTLILIALTICWYVYRQKE----SSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~Qnk----~Sk~hl~kmmkDle~L-q~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
+|-++++..+..||+|.==. .-+..|..-+.+.+.. ..|+..+.+.+++|+.|+.+......+
T Consensus 31 ~Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~ 98 (184)
T CHL00019 31 LINLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVN 98 (184)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566677763211 1234455555555543 457777788888888888777666655
No 179
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=50.70 E-value=88 Score=22.18 Aligned_cols=8 Identities=25% Similarity=0.513 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q psy17239 78 KLERRLQE 85 (115)
Q Consensus 78 ~LE~kl~~ 85 (115)
=+|+.-|+
T Consensus 66 yiEe~AR~ 73 (105)
T PRK00888 66 AIEERARN 73 (105)
T ss_pred HHHHHHHH
Confidence 34444444
No 180
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=50.18 E-value=72 Score=26.99 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=36.6
Q ss_pred HHHHHHHHHhHHHHH----HhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy17239 13 LGTLILIALTICWYV----YRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 65 (115)
Q Consensus 13 Lv~slvia~~GcWfA----y~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A 65 (115)
+++++++|++=++|- ..+.|=||+-+++=+|+.||=..-......+|.++...
T Consensus 190 ~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~~~re~~~~ 246 (342)
T TIGR01404 190 LGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRELHQEILSE 246 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 344555555555554 44566789999999999999877777777777666543
No 181
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=49.94 E-value=64 Score=27.47 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHHH
Q psy17239 11 YILGTLILIALTICWYVYRQKESSQQHL 38 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~hl 38 (115)
|++|++|+++.+|. -+|. |+-|.||
T Consensus 79 ~~~v~liLgl~ig~-p~~k--rkek~~i 103 (279)
T PF07271_consen 79 LLAVALILGLAIGI-PIYK--RKEKRMI 103 (279)
T ss_pred HHHHHHHHHHhhcc-hhhh--hhHHHHH
Confidence 45555566656666 5555 4444444
No 182
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=49.84 E-value=27 Score=21.46 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=14.7
Q ss_pred HHHH-HHHHHHHHHhHHHHHH
Q psy17239 9 KDYI-LGTLILIALTICWYVY 28 (115)
Q Consensus 9 KD~~-Lv~slvia~~GcWfAy 28 (115)
.||+ ++++.+.|+|++-.+|
T Consensus 12 RdFL~~at~~~gavG~~~~a~ 32 (41)
T PF10399_consen 12 RDFLTIATSAVGAVGAAAAAW 32 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 5777 7778888888776654
No 183
>COG5547 Small integral membrane protein [Function unknown]
Probab=49.82 E-value=22 Score=24.16 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=19.6
Q ss_pred CchHHHHHHHHHHHHHhHHHHHH
Q psy17239 6 SHVKDYILGTLILIALTICWYVY 28 (115)
Q Consensus 6 n~~KD~~Lv~slvia~~GcWfAy 28 (115)
-+||-++.++++++|+++..|+=
T Consensus 28 GfwKtilviil~~lGv~iGl~~~ 50 (62)
T COG5547 28 GFWKTILVIILILLGVYIGLYKK 50 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999988763
No 184
>PF13584 BatD: Oxygen tolerance
Probab=49.58 E-value=35 Score=28.81 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=9.8
Q ss_pred HHHHHHHhHHHHHHhhhhhH
Q psy17239 15 TLILIALTICWYVYRQKESS 34 (115)
Q Consensus 15 ~slvia~~GcWfAy~Qnk~S 34 (115)
+++.+++++|||.+..+|..
T Consensus 432 ~~~~~l~~~~~~~~~~~~~~ 451 (484)
T PF13584_consen 432 LLLPLLLLLLLLILRRKRRK 451 (484)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34444455566655554333
No 185
>KOG0996|consensus
Probab=49.48 E-value=74 Score=32.17 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 34 SQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLE 80 (115)
Q Consensus 34 Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE 80 (115)
-+.|.+++-|....+.++.....++-+..+.++.+.+.-.+|...|+
T Consensus 407 lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~ 453 (1293)
T KOG0996|consen 407 LKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLE 453 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHH
Confidence 34566666677777888888888888888888888888887765555
No 186
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.45 E-value=93 Score=24.09 Aligned_cols=54 Identities=28% Similarity=0.506 Sum_probs=31.5
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q psy17239 29 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQEN------AASEKIKLERRLQE 85 (115)
Q Consensus 29 ~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~------v~~EK~~LE~kl~~ 85 (115)
...+.-+.-+.++.++++.+ +....+++.+++.+...... ...+...|++++..
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~---~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~ 121 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEEL---EKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKE 121 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 34444555667777666554 56677788888887643332 24445555554444
No 187
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=48.91 E-value=67 Score=27.45 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=37.0
Q ss_pred HHHHHHHHhHHHH----HHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy17239 14 GTLILIALTICWY----VYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERAR 66 (115)
Q Consensus 14 v~slvia~~GcWf----Ay~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~ 66 (115)
++++++|++=++| ..++.|=||+-+++=.|+.||=..-......+|.++...+
T Consensus 199 ~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR~~~re~a~~~ 255 (359)
T PRK05702 199 LALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIRQLQREMARRR 255 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhH
Confidence 3444455544444 4456677899999999999998877777777777766544
No 188
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=48.85 E-value=77 Score=27.45 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=34.7
Q ss_pred HHHHHHHhHHHHHH----hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy17239 15 TLILIALTICWYVY----RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 65 (115)
Q Consensus 15 ~slvia~~GcWfAy----~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A 65 (115)
+++++|++=++|-+ ..-|=||+-+++=+|++||=..-......+|.++..-
T Consensus 200 ~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~Rq~~re~a~~ 254 (386)
T PRK12468 200 GLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIRQQQRAMARR 254 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 34445555555544 4456689999999999999777777777777666543
No 189
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=48.84 E-value=1.1e+02 Score=22.87 Aligned_cols=41 Identities=15% Similarity=0.298 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 35 QQHLRRMMKDMEG-LQRAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 35 k~hl~kmmkDle~-Lq~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
+.+|..-+.+.+. ...|+..+.+.++.|..|+.+......+
T Consensus 55 ~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~ 96 (167)
T PRK08475 55 INKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVET 96 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544 3456667777777777777776665555
No 190
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=48.50 E-value=2e+02 Score=25.67 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=37.3
Q ss_pred HHHHhHHHHHHh----hhhhH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 18 LIALTICWYVYR----QKESS-----QQHLRRMMKDMEGLQRAELDLANLQKELERARQEQEN 71 (115)
Q Consensus 18 via~~GcWfAy~----Qnk~S-----k~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~ 71 (115)
+|...|.+||.. |-|.+ +.+|+++...=|||.+-..++++-|.+-++-+-..+.
T Consensus 48 ~iss~gwff~i~~re~qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqk 110 (401)
T PF06785_consen 48 IISSLGWFFAIGRREKQLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQK 110 (401)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 344455556653 43443 5668899999999999999999888877666555444
No 191
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=48.37 E-value=73 Score=23.44 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 52 ELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 52 E~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
...+.+|+++++.+..+.+.+..|+..|=+++++
T Consensus 103 ~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 136 (144)
T PF11221_consen 103 LKRIKELEEENEEAEEELQEAVKEAEELLKQVQE 136 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999998888877
No 192
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=48.37 E-value=1.2e+02 Score=23.70 Aligned_cols=47 Identities=15% Similarity=0.310 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy17239 49 QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKS 98 (115)
Q Consensus 49 q~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~ 98 (115)
.+.|....+|..++-.-+++......+|..-..++.. .+.+++.+..
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~---lks~~~~l~~ 173 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISR---LKSEAEALKE 173 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 5566777777777777777666666666555544444 5555555554
No 193
>COG4852 Predicted membrane protein [Function unknown]
Probab=48.33 E-value=46 Score=25.54 Aligned_cols=40 Identities=28% Similarity=0.667 Sum_probs=33.8
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhh
Q psy17239 6 SHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDM 45 (115)
Q Consensus 6 n~~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDl 45 (115)
|++|-++.-..+.+-+--||..+.-+|-.|..|..+|-|.
T Consensus 2 ~flk~f~~s~V~FLv~D~~WL~~~skklYq~~iGdlm~Df 41 (134)
T COG4852 2 NFLKPFIISGVIFLVLDICWLFFASKKLYQPYIGDLMGDF 41 (134)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhhhc
Confidence 6778777666666667789999999999999999999984
No 194
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=48.33 E-value=18 Score=24.67 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=22.1
Q ss_pred HHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHH
Q psy17239 15 TLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQ 49 (115)
Q Consensus 15 ~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq 49 (115)
++-+.|+.|||-.-.|+..+..--+ .+|..+++
T Consensus 23 LLsIl~~lt~~ai~~Qq~~At~~Y~--~~d~~~ik 55 (66)
T PF13179_consen 23 LLSILAFLTYWAIKVQQEQATNPYK--LKDANNIK 55 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc--ccChHHhh
Confidence 3445677899999999887765544 45555544
No 195
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=48.00 E-value=79 Score=26.88 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 50 RAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 50 ~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
.....+.++..+|+..+.|++....|-..||-+..+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee 167 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEE 167 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666666655544
No 196
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=47.86 E-value=31 Score=27.02 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=14.7
Q ss_pred HHHHHHHHhHHHHHHhhhhh
Q psy17239 14 GTLILIALTICWYVYRQKES 33 (115)
Q Consensus 14 v~slvia~~GcWfAy~Qnk~ 33 (115)
+.+-+.++||++++|..|-.
T Consensus 46 a~~~~~~lg~~~~~~~~nPd 65 (173)
T PF10171_consen 46 AALYLTLLGGAYYCYRTNPD 65 (173)
T ss_pred HHHHHHHHHHHHHHHHcCCC
Confidence 45667788899999876543
No 197
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=47.59 E-value=1.1e+02 Score=22.60 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 35 QQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 35 k~hl~kmmkDle~L-q~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
+..|...+.+-+.. ..|+..+.+-+++|+.|+.+-..-..+
T Consensus 43 ~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~ 84 (167)
T PRK14475 43 AAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAA 84 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666654 357778888888888887776654444
No 198
>KOG0161|consensus
Probab=47.17 E-value=1.3e+02 Score=31.69 Aligned_cols=58 Identities=31% Similarity=0.421 Sum_probs=35.4
Q ss_pred HhhhhhHHHHHHHHHHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 28 YRQKESSQQHLRRMMKDMEGLQRAELDLA-----------NLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 28 y~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~-----------dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
..|.+.-+..++-+..+++..++|...+. -++.+++.-+.....+...+.++|.++.+
T Consensus 1631 ~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E 1699 (1930)
T KOG0161|consen 1631 QKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEE 1699 (1930)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34445555555556666666665555444 45555555556666667778888877776
No 199
>TIGR00247 conserved hypothetical protein, YceG family. This uncharacterized protein family, found in three of four microbial genomes, virtually always once per genome, includes YceG from Escherichia coli. This protein is encoded next to PabC, 4-amino-4-deoxychorismate lyase, in E. coli and numerous other proteobacteria, but that proximity is not conserved in other lineages. Numerous members of this family have been misannotated as aminodeoxychorismate lyase, apparently because of promiximty to PabC.
Probab=47.03 E-value=20 Score=29.86 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhHHHHHHh
Q psy17239 11 YILGTLILIALTICWYVYR 29 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~ 29 (115)
+++++.+|++++|++|+|-
T Consensus 7 ~i~~~~vl~~~~~~~~~~~ 25 (342)
T TIGR00247 7 IILLLFVLFFILGSILSYK 25 (342)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554443
No 200
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=46.75 E-value=24 Score=22.76 Aligned_cols=21 Identities=5% Similarity=0.181 Sum_probs=10.5
Q ss_pred HHHHHHHHHHh---HHHHHHhhhh
Q psy17239 12 ILGTLILIALT---ICWYVYRQKE 32 (115)
Q Consensus 12 ~Lv~slvia~~---GcWfAy~Qnk 32 (115)
++.+|+++|++ ++|+|.+-++
T Consensus 7 LIpiSl~l~~~~l~~f~Wavk~GQ 30 (51)
T TIGR00847 7 LIPISLLLGGVGLVAFLWSLKSGQ 30 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCC
Confidence 34455555544 4555555444
No 201
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=46.69 E-value=1.1e+02 Score=28.24 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17239 57 NLQKELERARQEQENAA 73 (115)
Q Consensus 57 dLQ~~Le~A~~e~~~v~ 73 (115)
.|+..|+.+++++....
T Consensus 175 ~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 175 RLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444554444444433
No 202
>PRK08156 type III secretion system protein SpaS; Validated
Probab=46.69 E-value=89 Score=26.91 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=37.7
Q ss_pred HHHHHHHHHhHHHHH----HhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy17239 13 LGTLILIALTICWYV----YRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERAR 66 (115)
Q Consensus 13 Lv~slvia~~GcWfA----y~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~ 66 (115)
+++++|+|++=+||- ..+-|=||+-+++=.|++||=..-......+|.++...+
T Consensus 186 ~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~~~re~a~~r 243 (361)
T PRK08156 186 LACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREAHQEILSEQ 243 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhH
Confidence 344555666555554 445567899999999999998877777777777766544
No 203
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=46.30 E-value=27 Score=27.55 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=17.2
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHhh
Q psy17239 6 SHVKDYILGTLILIALTICWYVYRQ 30 (115)
Q Consensus 6 n~~KD~~Lv~slvia~~GcWfAy~Q 30 (115)
.+|+=++++++++++++++||.|..
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~ 26 (334)
T TIGR00998 2 KYFLLLLVVLLIVVAGAYAIYWFLV 26 (334)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677777777777777777543
No 204
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=46.01 E-value=73 Score=25.58 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q psy17239 47 GLQRAELDLANLQKELERARQEQENA-------ASEKIKLERRLQE 85 (115)
Q Consensus 47 ~Lq~AE~sL~dLQ~~Le~A~~e~~~v-------~~EK~~LE~kl~~ 85 (115)
.++.|+.+-..|+.+-..|.++.+.. ..||..|++++++
T Consensus 41 k~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e 86 (246)
T PF00769_consen 41 KLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELRE 86 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433332 2334455555555
No 205
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=45.97 E-value=1.2e+02 Score=22.28 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=20.8
Q ss_pred HHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 36 QHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAA 73 (115)
Q Consensus 36 ~hl~kmmkDle~L-q~AE~sL~dLQ~~Le~A~~e~~~v~ 73 (115)
..|...+.+-+.. +.|+.-+.+.+++|..|+.+-....
T Consensus 56 ~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii 94 (156)
T CHL00118 56 EYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEI 94 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 3456666666677777766554443
No 206
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=45.80 E-value=25 Score=20.60 Aligned_cols=21 Identities=29% Similarity=0.134 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHh
Q psy17239 9 KDYILGTLILIALTICWYVYR 29 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWfAy~ 29 (115)
-=++-++++++++.|++++|+
T Consensus 12 Gl~~g~~l~~~~~tG~~~~f~ 32 (37)
T PF13706_consen 12 GLILGLLLFVIFLTGAVMVFR 32 (37)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 334556788899999999984
No 207
>PRK00182 tatB sec-independent translocase; Provisional
Probab=45.68 E-value=1.5e+02 Score=23.28 Aligned_cols=30 Identities=10% Similarity=0.268 Sum_probs=15.1
Q ss_pred HHHHHHHHhhHHHHHHHH--HHHHHHHHHHHH
Q psy17239 36 QHLRRMMKDMEGLQRAEL--DLANLQKELERA 65 (115)
Q Consensus 36 ~hl~kmmkDle~Lq~AE~--sL~dLQ~~Le~A 65 (115)
..+++++++...=-+.|. .|.|+++.|.+.
T Consensus 38 r~~R~~~~~~k~el~~Elg~e~~elrk~l~~l 69 (160)
T PRK00182 38 LAARTAINNAKQQLDGDFGEEFDEFRKPLNQI 69 (160)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444433333332 467777776653
No 208
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=45.35 E-value=89 Score=20.70 Aligned_cols=36 Identities=17% Similarity=0.045 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHH-HHHHHHHHhhHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQ-QHLRRMMKDMEG 47 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk-~hl~kmmkDle~ 47 (115)
..+++.++++.|++.+|.=-|..- ..+.+..++=..
T Consensus 19 ~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~ 55 (123)
T PF09335_consen 19 GFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKR 55 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH
Confidence 455666888899999998887776 445444444333
No 209
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=45.26 E-value=32 Score=26.03 Aligned_cols=33 Identities=27% Similarity=0.659 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHH
Q psy17239 11 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQ 49 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq 49 (115)
|+|+-++..-+-..||.-. +|--|.|++||.|+
T Consensus 28 fllayllmahiwlswfsnn------qhclrtmrhleklk 60 (138)
T PF05663_consen 28 FLLAYLLMAHIWLSWFSNN------QHCLRTMRHLEKLK 60 (138)
T ss_pred HHHHHHHHHHHHHHHHcCc------HHHHHHHHHHHhcC
Confidence 4555555555556677543 57889999999875
No 210
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=45.25 E-value=56 Score=21.04 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHHHHHhhhhhHHHHHH
Q psy17239 13 LGTLILIALTICWYVYRQKESSQQHLR 39 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~Qnk~Sk~hl~ 39 (115)
|.+++..|+.+.+++|...+.-..|..
T Consensus 47 ll~ilt~gi~~i~w~~k~~~~i~~~~~ 73 (75)
T PF14018_consen 47 LLSILTCGIYSIYWAYKLGNRINEEAR 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455677777777776665555543
No 211
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=45.12 E-value=27 Score=21.81 Aligned_cols=21 Identities=5% Similarity=0.246 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhHH---HHHHhhh
Q psy17239 11 YILGTLILIALTIC---WYVYRQK 31 (115)
Q Consensus 11 ~~Lv~slvia~~Gc---WfAy~Qn 31 (115)
+++.+|+++|++|. |+|.+-+
T Consensus 5 ~lip~sl~l~~~~l~~f~Wavk~G 28 (45)
T PF03597_consen 5 ILIPVSLILGLIALAAFLWAVKSG 28 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Confidence 34556666555554 4444433
No 212
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=44.93 E-value=83 Score=28.65 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=37.1
Q ss_pred HHHHHHHHhHHHHH----HhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy17239 14 GTLILIALTICWYV----YRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERAR 66 (115)
Q Consensus 14 v~slvia~~GcWfA----y~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~ 66 (115)
++++++|+.=++|- .++.|=||+-+++=+||+||=..-......+|+++.+.+
T Consensus 455 ~~~~via~~D~~~q~~~~~k~lkMskqEvK~E~Ke~EGdP~iK~r~R~~~re~~~~~ 511 (609)
T PRK12772 455 LIMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAKIKQKQREMAMQR 511 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhh
Confidence 34455555555544 445567899999999999998877777777777665443
No 213
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=44.39 E-value=1.1e+02 Score=24.11 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHH
Q psy17239 11 YILGTLILIALTICWYVYRQKESSQQHLRRMM 42 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmm 42 (115)
++++++++++++++++++.....++..+....
T Consensus 7 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 38 (475)
T PRK11100 7 LFLGYFLIVALAAYFVLRIFVQEVKPGVRQAT 38 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 45556677777777777777666666655443
No 214
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=44.32 E-value=1.6e+02 Score=27.57 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 34 SQQHLRRMMKDMEGLQ-RAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 34 Sk~hl~kmmkDle~Lq-~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
....+.+++.+|+... ..|+...++.+.++.++..++....++..|+++.++
T Consensus 514 ~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 566 (782)
T PRK00409 514 DKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK 566 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888753 356666666666666666666666666666655544
No 215
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=44.17 E-value=28 Score=24.65 Aligned_cols=18 Identities=17% Similarity=0.480 Sum_probs=13.0
Q ss_pred CCCchHHHHHHHHHHHHH
Q psy17239 4 STSHVKDYILGTLILIAL 21 (115)
Q Consensus 4 ~~n~~KD~~Lv~slvia~ 21 (115)
+.+.+|||+||+..++-+
T Consensus 29 N~sfirdFvLVic~~lVf 46 (84)
T PF06143_consen 29 NRSFIRDFVLVICCFLVF 46 (84)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 567889999987654433
No 216
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.12 E-value=49 Score=24.45 Aligned_cols=6 Identities=33% Similarity=0.313 Sum_probs=3.1
Q ss_pred HHHHHH
Q psy17239 106 EVCQLK 111 (115)
Q Consensus 106 Ev~~Lk 111 (115)
|++++.
T Consensus 146 e~~~~~ 151 (169)
T PF07106_consen 146 EKEKLE 151 (169)
T ss_pred HHHHHH
Confidence 555554
No 217
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=44.09 E-value=1.3e+02 Score=22.18 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=11.1
Q ss_pred HHHHHhhHHHHHHHHHH
Q psy17239 39 RRMMKDMEGLQRAELDL 55 (115)
Q Consensus 39 ~kmmkDle~Lq~AE~sL 55 (115)
++=|.-++.+++=|.+.
T Consensus 59 t~~MTy~~Q~k~Ye~a~ 75 (104)
T PF11460_consen 59 TGKMTYMQQRKDYEEAV 75 (104)
T ss_pred cCCCcHHHHHHHHHHHH
Confidence 33466677777777766
No 218
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=44.01 E-value=7.6 Score=27.82 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHhh
Q psy17239 11 YILGTLILIALTICWYVYRQ 30 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Q 30 (115)
++++..+++++.+|||.+.+
T Consensus 18 ll~~~~~~l~~~l~~~~~~~ 37 (160)
T PF04612_consen 18 LLLVLGVVLLLALLYLLLWQ 37 (160)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56667777788888887764
No 219
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=43.92 E-value=52 Score=24.22 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhH----HHHHHhhhhhH
Q psy17239 11 YILGTLILIALTI----CWYVYRQKESS 34 (115)
Q Consensus 11 ~~Lv~slvia~~G----cWfAy~Qnk~S 34 (115)
+.+++++++++|| .|+.|.|++..
T Consensus 95 ~~~~~~~l~~~~~~~~r~~~~~~~~~~r 122 (141)
T PF12576_consen 95 LILILSLLSALGGYAFRQYTGYKNNRAR 122 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554 38899888754
No 220
>PF06961 DUF1294: Protein of unknown function (DUF1294); InterPro: IPR010718 This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.
Probab=43.91 E-value=28 Score=22.52 Aligned_cols=20 Identities=10% Similarity=-0.152 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhHHHHHHh
Q psy17239 10 DYILGTLILIALTICWYVYR 29 (115)
Q Consensus 10 D~~Lv~slvia~~GcWfAy~ 29 (115)
-.++.+++++|-.|+|++-.
T Consensus 25 ~~L~~la~~GG~~Ga~~~m~ 44 (55)
T PF06961_consen 25 KTLLLLALLGGWPGALLGMY 44 (55)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 35677888889999998854
No 221
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=43.91 E-value=20 Score=20.01 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhHH
Q psy17239 11 YILGTLILIALTIC 24 (115)
Q Consensus 11 ~~Lv~slvia~~Gc 24 (115)
+++++++.++++||
T Consensus 2 ~~~~~~~~~~LsgC 15 (24)
T PF13627_consen 2 LLLLLALALALSGC 15 (24)
T ss_pred hHHHHHHHHHHHhc
Confidence 45677778888888
No 222
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=43.72 E-value=38 Score=20.82 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhHHHHHHhhh
Q psy17239 11 YILGTLILIALTICWYVYRQK 31 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qn 31 (115)
++++.+++..++|.|-.|++=
T Consensus 34 ~~~~g~llG~~~g~~~~~~~~ 54 (55)
T PF09527_consen 34 FTLIGLLLGIAAGFYNVYRLV 54 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455666666777888887763
No 223
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=43.68 E-value=27 Score=26.18 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHhhhhhHH
Q psy17239 3 NSTSHVKDYILGTLILIALTICWYVYRQKESSQ 35 (115)
Q Consensus 3 ~~~n~~KD~~Lv~slvia~~GcWfAy~Qnk~Sk 35 (115)
...+.||=++.+++++|+++++.|++. +.+..
T Consensus 69 ~~~gewk~v~~~~~~~i~~s~~l~~~~-r~~~~ 100 (142)
T PF02936_consen 69 APTGEWKKVFGGVFIFIGFSVLLFIWQ-RSYVY 100 (142)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHH-HHHT-
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHH-HHHhC
Confidence 356788989999999999888877765 44433
No 224
>COG1422 Predicted membrane protein [Function unknown]
Probab=43.64 E-value=1.6e+02 Score=23.97 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHHHH
Q psy17239 11 YILGTLILIALTICWY 26 (115)
Q Consensus 11 ~~Lv~slvia~~GcWf 26 (115)
.+||+++++|+.-.-.
T Consensus 49 vilV~avi~gl~~~i~ 64 (201)
T COG1422 49 VILVAAVITGLYITIL 64 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777665543
No 225
>PRK10772 cell division protein FtsL; Provisional
Probab=43.54 E-value=1.3e+02 Score=22.03 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=8.0
Q ss_pred HHHHHHHHhHHHHHHh
Q psy17239 14 GTLILIALTICWYVYR 29 (115)
Q Consensus 14 v~slvia~~GcWfAy~ 29 (115)
.+++++++++|=++++
T Consensus 26 ~l~Ll~~vv~SAl~VV 41 (108)
T PRK10772 26 PLCLFIAVIVSAVTVV 41 (108)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555544
No 226
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=43.18 E-value=92 Score=26.52 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=30.7
Q ss_pred HHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy17239 25 WYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 65 (115)
Q Consensus 25 WfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A 65 (115)
|-...+.|=||+-+++=+|+.||=..-......+|.++...
T Consensus 207 ~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~~~re~~~~ 247 (349)
T PRK12721 207 YKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRELQSEIQSG 247 (349)
T ss_pred HHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 44556677889999999999999877777777766666543
No 227
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=42.87 E-value=1.7e+02 Score=23.15 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 51 AELDLANLQKELERARQEQENAASEKIKLERRL 83 (115)
Q Consensus 51 AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl 83 (115)
+...+.+++.+++.+...+..+..+...|-+.+
T Consensus 80 l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~l 112 (312)
T PF00038_consen 80 LKEELEDLRRKYEEELAERKDLEEELESLRKDL 112 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 344445555555555555554444444443333
No 228
>KOG2792|consensus
Probab=42.51 E-value=56 Score=27.85 Aligned_cols=29 Identities=3% Similarity=-0.008 Sum_probs=22.6
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHhhhhh
Q psy17239 5 TSHVKDYILGTLILIALTICWYVYRQKES 33 (115)
Q Consensus 5 ~n~~KD~~Lv~slvia~~GcWfAy~Qnk~ 33 (115)
...|+-++.+..+.+|++|.|+++.+.|.
T Consensus 71 p~~w~~~~~t~Alg~~~~g~~~Y~~~~k~ 99 (280)
T KOG2792|consen 71 PFSWRSLLATFALGLGLGGALAYLKKEKA 99 (280)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888899999998887766543
No 229
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.47 E-value=1.3e+02 Score=21.86 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhhh---hHHHHHHHHHHhhHHH
Q psy17239 11 YILGTLILIALTICWYVYRQKE---SSQQHLRRMMKDMEGL 48 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk---~Sk~hl~kmmkDle~L 48 (115)
+.||+-++||.++++|.-...+ ..+.-+.+....++.-
T Consensus 4 i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~y 44 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQY 44 (128)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777665432 3344455554444443
No 230
>KOG1962|consensus
Probab=42.37 E-value=1.9e+02 Score=23.63 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=7.1
Q ss_pred HHHHHhhHHHHHHHHH
Q psy17239 39 RRMMKDMEGLQRAELD 54 (115)
Q Consensus 39 ~kmmkDle~Lq~AE~s 54 (115)
++.|+..+.+++-..+
T Consensus 130 ~~~~~~~~~lk~~~~~ 145 (216)
T KOG1962|consen 130 EKAMKENEALKKQLEN 145 (216)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 4444444444444433
No 231
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=42.16 E-value=1.9e+02 Score=24.83 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q psy17239 74 SEKIKLERRLQE 85 (115)
Q Consensus 74 ~EK~~LE~kl~~ 85 (115)
.||..|+++|..
T Consensus 192 ~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 192 AEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHcc
Confidence 445666666643
No 232
>KOG4571|consensus
Probab=42.14 E-value=33 Score=29.33 Aligned_cols=41 Identities=41% Similarity=0.496 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHhh
Q psy17239 64 RARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEI 114 (115)
Q Consensus 64 ~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~~~~~sdlEv~~LkqEi 114 (115)
+-+.|.+.+.+|...||++=++ ++..+..+.. ||+.|||=|
T Consensus 245 KkRae~E~l~ge~~~Le~rN~~---LK~qa~~ler-------EI~ylKqli 285 (294)
T KOG4571|consen 245 KKRAEKEALLGELEGLEKRNEE---LKDQASELER-------EIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-------HHHHHHHHH
Confidence 3456778888888888876655 3434444443 777776643
No 233
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=41.77 E-value=1.7e+02 Score=23.01 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=21.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 37 HLRRMMKDMEGLQRAELDLANLQKELERARQEQENA 72 (115)
Q Consensus 37 hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v 72 (115)
-+........++..+..+-..|.+++...+.+....
T Consensus 60 ~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 60 FVSGVFESLASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666667766666665555533
No 234
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=41.76 E-value=47 Score=28.66 Aligned_cols=41 Identities=7% Similarity=0.166 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHH
Q psy17239 8 VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGL 48 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~L 48 (115)
+++|.=.++-+=.++|-||.+.|.-.-..-++++|+.|-+-
T Consensus 216 ie~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~ 256 (312)
T COG1907 216 IESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEA 256 (312)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHh
Confidence 56666677778889999999999999999999999998754
No 235
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=41.44 E-value=8 Score=29.21 Aligned_cols=14 Identities=7% Similarity=-0.009 Sum_probs=8.2
Q ss_pred HHHHhHHHHHHhhh
Q psy17239 18 LIALTICWYVYRQK 31 (115)
Q Consensus 18 via~~GcWfAy~Qn 31 (115)
+.|.+|.||.+..+
T Consensus 37 ~~~g~g~~f~~~~~ 50 (166)
T PRK12785 37 LGGGGGGFFFFFSH 50 (166)
T ss_pred HhcchheEEEEEec
Confidence 33445778876543
No 236
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=41.43 E-value=30 Score=24.52 Aligned_cols=26 Identities=8% Similarity=0.042 Sum_probs=10.8
Q ss_pred HHHHHHhHHHHHH--hhhhhHHHHHHHH
Q psy17239 16 LILIALTICWYVY--RQKESSQQHLRRM 41 (115)
Q Consensus 16 slvia~~GcWfAy--~Qnk~Sk~hl~km 41 (115)
.+++|+++|-++| .|-+.++..+.++
T Consensus 8 ~~~~~v~~~i~~y~~~k~~ka~~~~~kL 35 (87)
T PF10883_consen 8 GGVGAVVALILAYLWWKVKKAKKQNAKL 35 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333 3444444443333
No 237
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=41.23 E-value=1.5e+02 Score=24.46 Aligned_cols=12 Identities=17% Similarity=0.493 Sum_probs=5.0
Q ss_pred HHHHhhHHHHHH
Q psy17239 40 RMMKDMEGLQRA 51 (115)
Q Consensus 40 kmmkDle~Lq~A 51 (115)
.+++.+..|+.+
T Consensus 188 ~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 188 ELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 238
>PRK12757 cell division protein FtsN; Provisional
Probab=41.18 E-value=9.6 Score=31.62 Aligned_cols=21 Identities=0% Similarity=0.189 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhHHHHHHhhhhh
Q psy17239 12 ILGTLILIALTICWYVYRQKES 33 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~ 33 (115)
+.|.+||+.+||.||.- +||.
T Consensus 4 lava~lv~f~gGLyfi~-h~k~ 24 (256)
T PRK12757 4 LAVAVLVTFIGGLYFIT-HNKK 24 (256)
T ss_pred HHHHHHHHHhhheEEEe-cCCC
Confidence 34455555555555544 4663
No 239
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=41.12 E-value=1.8e+02 Score=22.95 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 53 LDLANLQKELERARQEQENAASEKI 77 (115)
Q Consensus 53 ~sL~dLQ~~Le~A~~e~~~v~~EK~ 77 (115)
.++.++.++-++-+.|......+..
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 240
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=41.06 E-value=1.2e+02 Score=23.16 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q psy17239 46 EGLQRAELDLANLQKELERAR---------QEQENAASEKIKLERRLQE 85 (115)
Q Consensus 46 e~Lq~AE~sL~dLQ~~Le~A~---------~e~~~v~~EK~~LE~kl~~ 85 (115)
+|+.+-+..|..|.+++..|+ +++......-..|+++|..
T Consensus 34 ~G~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~ 82 (160)
T PRK06342 34 AGLKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRT 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 455555666666666666554 5555555666667776665
No 241
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=40.99 E-value=79 Score=22.83 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRRMM 42 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmm 42 (115)
.+...++.++.|.|.+-+|.++.=.++.+-|
T Consensus 27 tll~vi~t~~lG~~llr~~g~~~~~~~~~~~ 57 (119)
T PF04186_consen 27 TLLLVILTAVLGIWLLRRQGRRALRRLQQSL 57 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999988766666544
No 242
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=40.98 E-value=1.8e+02 Score=22.89 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 9 KDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQ 67 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~ 67 (115)
+=++++..+|++++.|||...|-=+. ...+|+..+...+..|.-.++
T Consensus 37 q~ll~~~g~vL~l~i~Y~~iWqPl~~------------~~~~a~~~l~~~~qll~wvq~ 83 (178)
T PRK09731 37 KGMLLAAVVFLFSVGYYVLIWQPLSE------------RIEQQETMLQQLVAMNTRLKS 83 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 44678888888999999999886544 224555555555555544433
No 243
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=40.92 E-value=24 Score=25.19 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhh
Q psy17239 8 VKDYILGTLILIALTICWYVYRQKE 32 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcWfAy~Qnk 32 (115)
+.=++.++.++.+++..||+|.+..
T Consensus 6 ~~~~~~v~~vv~~~~~~w~~~~~~~ 30 (112)
T PF14155_consen 6 LVIAGAVLVVVAGAVVAWFGYSQFG 30 (112)
T ss_pred eEehHHHHHHHHHHHHhHhhhhhcc
Confidence 3334556666666777899998653
No 244
>PF06097 DUF945: Bacterial protein of unknown function (DUF945); InterPro: IPR010352 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.86 E-value=26 Score=28.70 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=5.4
Q ss_pred HHHHHHhHHHHH
Q psy17239 16 LILIALTICWYV 27 (115)
Q Consensus 16 slvia~~GcWfA 27 (115)
++++++||+||.
T Consensus 14 l~~~~~g~~~~~ 25 (460)
T PF06097_consen 14 LVAAWLGAPWYT 25 (460)
T ss_pred HHHHHHHHHHHH
Confidence 334444445543
No 245
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=40.70 E-value=42 Score=29.61 Aligned_cols=54 Identities=28% Similarity=0.382 Sum_probs=27.5
Q ss_pred HHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 14 GTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 14 v~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
+|+++| .+|.|-.+ +.+ ....... ..|..+...+..++++|..+..+.-.|..|
T Consensus 10 Avs~FG-~~~~~k~~---~~~-e~~~~~e---~eL~~~qeel~~~k~~l~~~E~~k~~~l~E 63 (522)
T PF05701_consen 10 AVSLFG-GSIDWKKH---QSL-ERVKEKE---TELEKAQEELAKLKEQLEAAEREKAQALSE 63 (522)
T ss_pred HHHHcC-CccccccC---Cch-hhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777 44466555 111 2222222 233455556666666666665555555554
No 246
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=40.60 E-value=1.9e+02 Score=23.19 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 35 QQHLRRMMKDMEG-LQRAELDLANLQKELERARQEQENAA 73 (115)
Q Consensus 35 k~hl~kmmkDle~-Lq~AE~sL~dLQ~~Le~A~~e~~~v~ 73 (115)
+..|...+.+-+. ...|+..+.+-+++++.|+.+.....
T Consensus 38 ~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii 77 (250)
T PRK14474 38 QQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFM 77 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544 34456666666666666666554433
No 247
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=40.33 E-value=1.4e+02 Score=22.64 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhcccccccccccccHHHHHH
Q psy17239 33 SSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASE---KIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQ 109 (115)
Q Consensus 33 ~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~E---K~~LE~kl~~~~~~~~~~~~l~~~~~~sdlEv~~ 109 (115)
.++.+++..+..+. ...+..+|..+..+.....-..+-...- ..+++.++.+ ...-... + +-++.+
T Consensus 146 ~a~~~~~~~~~~~~-~~~a~~~~er~e~ki~~~ea~a~a~~el~~~~~~~e~~l~~-------~~~~~~~-~--~~~La~ 214 (221)
T PF04012_consen 146 KAQKKVNEALASFS-VSSAMDSFERMEEKIEEMEARAEASAELADSDQDLEAELEE-------LERDSSV-S--EDELAA 214 (221)
T ss_pred HHHHHHHHHhccCC-ccchHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHH-------hcCCCcc-h--HHHHHH
Confidence 45566666666655 5555566666665555443333322221 1347777766 1111111 1 448888
Q ss_pred HHHh
Q psy17239 110 LKQE 113 (115)
Q Consensus 110 LkqE 113 (115)
||++
T Consensus 215 LK~~ 218 (221)
T PF04012_consen 215 LKAK 218 (221)
T ss_pred HHhH
Confidence 8765
No 248
>PF14992 TMCO5: TMCO5 family
Probab=40.32 E-value=31 Score=29.11 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhhh
Q psy17239 11 YILGTLILIALTICWYVYRQKE 32 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk 32 (115)
++.++++++++.||-|+|++.=
T Consensus 221 l~f~vL~f~~LL~y~~f~~~fI 242 (280)
T PF14992_consen 221 LFFMVLFFTRLLGYLLFYIQFI 242 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4567889999999999998864
No 249
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=40.20 E-value=1.7e+02 Score=22.57 Aligned_cols=9 Identities=44% Similarity=0.586 Sum_probs=3.6
Q ss_pred cccHHHHHH
Q psy17239 101 AFSDLEVCQ 109 (115)
Q Consensus 101 ~~sdlEv~~ 109 (115)
.+.++|..|
T Consensus 197 ~~Q~lEe~R 205 (236)
T cd07651 197 DFQDLEEER 205 (236)
T ss_pred HHHHHHHHH
Confidence 334444433
No 250
>PF02706 Wzz: Chain length determinant protein; InterPro: IPR003856 A number of related proteins are involved in the synthesis of lipopolysaccharide, O-antigen polysaccharide, capsule polysaccharide and exopolysaccharides. Chain length determinant protein (or wzz protein) is involved in lipopolysaccharide (lps) biosynthesis, conferring a modal distribution of chain length on the O-antigen component of lps []. It gives rise to a reduced number of short chain molecules and increases in numbers of longer molecules, with a modal value of 20. The MPA/MPA2 proteins function in CPS and EPS polymerisation and export [].; GO: 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane; PDB: 4E2H_C 3B8P_A 4E2C_B 4E29_A 3B8O_G 4E2L_I 3B8N_D 3B8M_C.
Probab=40.06 E-value=9.5 Score=26.16 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhhh
Q psy17239 11 YILGTLILIALTICWYVYRQKE 32 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk 32 (115)
+++++.++++++|+.|+|.+.+
T Consensus 18 ~i~~~~~l~~~~a~~~~~~~~~ 39 (152)
T PF02706_consen 18 LIIIVTLLFAILAFIYAFFAPP 39 (152)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4566666667777777776554
No 251
>PRK00404 tatB sec-independent translocase; Provisional
Probab=40.04 E-value=1.7e+02 Score=22.46 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=14.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy17239 40 RMMKDMEGLQRAELDLANLQKELERA 65 (115)
Q Consensus 40 kmmkDle~Lq~AE~sL~dLQ~~Le~A 65 (115)
+++++...=-.-|..+.|+++.|...
T Consensus 41 r~~~~~k~ei~~E~~~~elr~~l~~~ 66 (141)
T PRK00404 41 RSFNAIKQEVEREIGADEIRRQLHNE 66 (141)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 44444444334455567777777763
No 252
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.84 E-value=1.9e+02 Score=22.87 Aligned_cols=43 Identities=30% Similarity=0.489 Sum_probs=32.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 43 KDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 43 kDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
++-+.+..+...+.++...++..+.+-.+....+..||+.+.+
T Consensus 206 ~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 206 KSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence 4556677777777777777777777777777778888877776
No 253
>PF14007 YtpI: YtpI-like protein
Probab=39.69 E-value=41 Score=23.78 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=26.4
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHhhhhhHHHH
Q psy17239 5 TSHVKDYILGTLILIALTICWYVYRQKESSQQH 37 (115)
Q Consensus 5 ~n~~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~h 37 (115)
++.+-=++-++.+++|++-.|+-|+..|+-+.|
T Consensus 55 ~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~p~ 87 (89)
T PF14007_consen 55 GSTVRLIVGAIFLVLGLFNLFAGIRAYRHYRPL 87 (89)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhc
Confidence 445555778889999999999999998877654
No 254
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=39.66 E-value=2.2e+02 Score=23.59 Aligned_cols=70 Identities=27% Similarity=0.328 Sum_probs=49.6
Q ss_pred HHHHHHhHHHHHHh-------hhhhHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 16 LILIALTICWYVYR-------QKESSQQHLRRMMKD----MEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQ 84 (115)
Q Consensus 16 slvia~~GcWfAy~-------Qnk~Sk~hl~kmmkD----le~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~ 84 (115)
.=|.|+..++.+|. .-..++..+...... -..|...+..+..|+.+++.+..++.....+....++++.
T Consensus 201 ~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 201 KWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34667777777772 222222333333333 3456677899999999999999999999999999998888
Q ss_pred H
Q psy17239 85 E 85 (115)
Q Consensus 85 ~ 85 (115)
-
T Consensus 281 r 281 (344)
T PF12777_consen 281 R 281 (344)
T ss_dssp H
T ss_pred c
Confidence 6
No 255
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=39.64 E-value=1.5e+02 Score=21.67 Aligned_cols=29 Identities=14% Similarity=0.387 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRR 40 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~k 40 (115)
+|.=.++.+|+|....|=-.|+++.--++
T Consensus 78 ll~E~fiF~Va~~li~~E~~Rs~~ke~~K 106 (134)
T PF07047_consen 78 LLGEAFIFSVAAGLIIYEYWRSARKEAKK 106 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34567899999999999999999874433
No 256
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=39.35 E-value=2.4e+02 Score=24.04 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy17239 47 GLQRAELDLANLQKELERARQEQENAASE-KIKLERR 82 (115)
Q Consensus 47 ~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~E-K~~LE~k 82 (115)
.+-..-.+|..|..+|...-.+-+....+ -..|+++
T Consensus 179 E~g~L~~~~n~M~~~L~~~~~~l~~~~~~~t~~l~~~ 215 (569)
T PRK10600 179 EMAMLGTALNNMSAELAESYAVLEQRVQEKTAGLEQK 215 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556777777776665554433333 3344444
No 257
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=39.24 E-value=1e+02 Score=28.33 Aligned_cols=47 Identities=28% Similarity=0.348 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERAR 66 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~ 66 (115)
+.++.+++++.||||.- .|++|-|=-||==+-|- -|.+.+..|+-..
T Consensus 179 ~~vl~lligl~ga~~la-------~~ikr~~~glEP~EIa~-l~~er~A~l~si~ 225 (537)
T COG3290 179 IVVLGLLIGLLGAWILA-------RHIKRQMLGLEPEEIAT-LLEERQAMLQSIK 225 (537)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHhCCCHHHHHH-HHHHHHHHHHHhh
Confidence 45667788899999974 58888888887655553 3555555555444
No 258
>PRK10927 essential cell division protein FtsN; Provisional
Probab=39.01 E-value=11 Score=32.41 Aligned_cols=23 Identities=9% Similarity=0.232 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhh
Q psy17239 11 YILGTLILIALTICWYVYRQKES 33 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~ 33 (115)
++|++.||+.++||.|+..+||.
T Consensus 37 ~alAvavlv~fiGGLyFith~k~ 59 (319)
T PRK10927 37 VAIAAAVLVTFIGGLYFITHHKK 59 (319)
T ss_pred HHHHHHHHHHHhhheEEEecCCC
Confidence 44544444444444444455775
No 259
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=38.71 E-value=1.4e+02 Score=24.87 Aligned_cols=61 Identities=30% Similarity=0.443 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh---hhcccccccccc-cccHHHHHHHHHhh
Q psy17239 53 LDLANLQKELERARQEQENAASEKIKLERRLQE-HQA---LQGDASDLKSSS-AFSDLEVCQLKQEI 114 (115)
Q Consensus 53 ~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~-~~~---~~~~~~~l~~~~-~~sdlEv~~LkqEi 114 (115)
.++..++.+++..+....++..+..+|+.|++. -.+ ++-.-..|.++. .|-| |.-+|+.|+
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmd-EyEklE~EL 234 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMD-EYEKLEEEL 234 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHH
Confidence 455778888888888888888888888877754 122 333333344433 4555 888887775
No 260
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=38.66 E-value=74 Score=21.33 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHH
Q psy17239 33 SSQQHLRRMMKDMEGLQRAELDL---ANLQKELERARQE 68 (115)
Q Consensus 33 ~Sk~hl~kmmkDle~Lq~AE~sL---~dLQ~~Le~A~~e 68 (115)
..|.++..=|.+.|.|.+-+..- .+++++|.+.|.+
T Consensus 15 ~~K~~l~ik~~H~Ekl~kitK~p~El~~i~~kl~~~R~~ 53 (62)
T PF06034_consen 15 QMKRQLTIKSQHWEKLKKITKNPKELQEIEKKLQELRQN 53 (62)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 45667777788888888887655 7888888887765
No 261
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=38.35 E-value=2.8e+02 Score=24.51 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 48 LQRAELDLANLQKELERARQEQENAASEKIKLE 80 (115)
Q Consensus 48 Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE 80 (115)
|..+...|.+....|+++..|-.....--..|.
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~ 315 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLR 315 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666665554444333333
No 262
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=38.29 E-value=2e+02 Score=22.82 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17239 52 ELDLANLQKELERARQE 68 (115)
Q Consensus 52 E~sL~dLQ~~Le~A~~e 68 (115)
-.+|..+..+|+..-..
T Consensus 226 ~~~~n~m~~~l~~~~~~ 242 (461)
T PRK09470 226 GASFNQMVTALERMMTS 242 (461)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554433
No 263
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=38.19 E-value=1.8e+02 Score=26.74 Aligned_cols=9 Identities=33% Similarity=0.637 Sum_probs=5.6
Q ss_pred HHHHHHHhh
Q psy17239 106 EVCQLKQEI 114 (115)
Q Consensus 106 Ev~~LkqEi 114 (115)
+|.+|+.|+
T Consensus 372 ~ie~L~~el 380 (546)
T PF07888_consen 372 EIEKLSREL 380 (546)
T ss_pred HHHHHHHHH
Confidence 666666554
No 264
>KOG4593|consensus
Probab=38.19 E-value=1.8e+02 Score=27.87 Aligned_cols=51 Identities=27% Similarity=0.421 Sum_probs=38.8
Q ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q psy17239 35 QQHLRRMMKD-MEGLQRAELDLANLQKELERARQEQENAAS---EKIKLERRLQE 85 (115)
Q Consensus 35 k~hl~kmmkD-le~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~---EK~~LE~kl~~ 85 (115)
..||+++|+| +-.|..-+.++.++-.++...++-+.+|.- |+..|+.++..
T Consensus 239 le~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~ 293 (716)
T KOG4593|consen 239 LEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGR 293 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 5789999996 455666778888888888888888888864 56666677766
No 265
>PF15062 ARL6IP6: Haemopoietic lineage transmembrane helix
Probab=38.15 E-value=29 Score=24.83 Aligned_cols=17 Identities=24% Similarity=0.553 Sum_probs=14.7
Q ss_pred HHHHHHHHHhHHHHHHh
Q psy17239 13 LGTLILIALTICWYVYR 29 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~ 29 (115)
++.+++.|+.-|||.|-
T Consensus 26 ~~~~ll~Gllv~~Ft~~ 42 (85)
T PF15062_consen 26 LLSSLLCGLLVCSFTWT 42 (85)
T ss_pred HHHHHHHHHHHHHhhhe
Confidence 67889999999999883
No 266
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=38.10 E-value=1.4e+02 Score=21.41 Aligned_cols=34 Identities=32% Similarity=0.510 Sum_probs=24.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 42 MKDMEGLQRAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 42 mkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
..|++.|+.+...+.+++..+...+.+-+++...
T Consensus 55 a~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~ 88 (132)
T PF07926_consen 55 AEDIKELQQLREELQELQQEINELKAEAESAKAE 88 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888887777777666655443
No 267
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=37.92 E-value=42 Score=28.84 Aligned_cols=22 Identities=18% Similarity=0.656 Sum_probs=15.8
Q ss_pred hHHHHHHHHH-HHHHhHHHHHHh
Q psy17239 8 VKDYILGTLI-LIALTICWYVYR 29 (115)
Q Consensus 8 ~KD~~Lv~sl-via~~GcWfAy~ 29 (115)
|+-|+.-++. ++-.+||||++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFR 24 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556665665 667799999876
No 268
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=37.86 E-value=1.2e+02 Score=22.57 Aligned_cols=28 Identities=21% Similarity=0.076 Sum_probs=18.3
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHhhhhhH
Q psy17239 6 SHVKDYILGTLILIALTICWYVYRQKESS 34 (115)
Q Consensus 6 n~~KD~~Lv~slvia~~GcWfAy~Qnk~S 34 (115)
+.||=++-.+++++++++ |+.+.|+.++
T Consensus 72 ~ewk~v~~~~~~~i~~s~-~~~~~~r~~~ 99 (136)
T cd00922 72 GEWKTVFGGVLAFIGITG-VIFGLQRAFV 99 (136)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 367777777788877665 5555555543
No 269
>PRK10807 paraquat-inducible protein B; Provisional
Probab=37.86 E-value=35 Score=30.54 Aligned_cols=6 Identities=17% Similarity=0.695 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy17239 79 LERRLQ 84 (115)
Q Consensus 79 LE~kl~ 84 (115)
|.+-|+
T Consensus 478 L~~TL~ 483 (547)
T PRK10807 478 MQKTLR 483 (547)
T ss_pred HHHHHH
Confidence 333333
No 270
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=37.75 E-value=1.4e+02 Score=22.69 Aligned_cols=36 Identities=31% Similarity=0.276 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 50 RAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 50 ~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
.+|..|...|..++.+-.+.+|...+...|+.++..
T Consensus 28 ~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~ 63 (140)
T PF10473_consen 28 SLERELEMSQENKECLILDAENSKAEIETLEEELEE 63 (140)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888888887787777777765
No 271
>PF05609 LAP1C: Lamina-associated polypeptide 1C (LAP1C); InterPro: IPR008662 This entry contains Rattus norvegicus LAP1C proteins and several uncharacterised highly related sequences from both Mus sp. and humans. Lamina-associated polypeptide 1s (LAP1s), also known as Torsin-1A-interacting protein 1, are type 2 integral membrane proteins with a single membrane-spanning region of the inner nuclear membrane []. LAP1s bind to both A- and B-type lamins and have a putative role in the membrane attachment and assembly of the nuclear lamina [].
Probab=37.69 E-value=48 Score=29.80 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhHHHHHH
Q psy17239 12 ILGTLILIALTICWYVY 28 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy 28 (115)
+||+.+|++.+.|||..
T Consensus 222 ~li~v~~l~~~~~~~~~ 238 (465)
T PF05609_consen 222 LLILVAVLASGFLSFFS 238 (465)
T ss_pred hhHHHHHHHHHHHhhcc
Confidence 66666777777777753
No 272
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=37.57 E-value=40 Score=23.54 Aligned_cols=20 Identities=15% Similarity=0.519 Sum_probs=13.1
Q ss_pred HHHHHHHHhHHHHHHhhhhh
Q psy17239 14 GTLILIALTICWYVYRQKES 33 (115)
Q Consensus 14 v~slvia~~GcWfAy~Qnk~ 33 (115)
+++|++.+++|||...+.+.
T Consensus 2 Ll~llll~~~~~~~w~~~~~ 21 (97)
T PF11743_consen 2 LLLLLLLALVGWFWWQSRRQ 21 (97)
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 35677777777777666543
No 273
>COG5339 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.54 E-value=14 Score=33.34 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=11.5
Q ss_pred HHHHHHHHHhHHHHH
Q psy17239 13 LGTLILIALTICWYV 27 (115)
Q Consensus 13 Lv~slvia~~GcWfA 27 (115)
.|.+.++++|||||.
T Consensus 9 ivaLgaVw~G~~Wyt 23 (479)
T COG5339 9 IVALGAVWLGGAWYT 23 (479)
T ss_pred HHHHHHHHcCCcccc
Confidence 455677788999996
No 274
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.35 E-value=1e+02 Score=19.22 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q psy17239 77 IKLERRLQ 84 (115)
Q Consensus 77 ~~LE~kl~ 84 (115)
.-+|+.-|
T Consensus 55 ~~ie~~AR 62 (80)
T PF04977_consen 55 DYIEKVAR 62 (80)
T ss_pred HHHHHHHH
Confidence 33444444
No 275
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=37.29 E-value=2e+02 Score=22.43 Aligned_cols=33 Identities=36% Similarity=0.486 Sum_probs=14.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 38 LRRMMKDMEGLQRAELDLANLQKELERARQEQE 70 (115)
Q Consensus 38 l~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~ 70 (115)
+..--+|--+|+.+...+..++++|...+-+++
T Consensus 78 L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~e 110 (201)
T PF13851_consen 78 LKNYEKDKQSLQNLKARLKELEKELKDLKWEHE 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444443
No 276
>PF03707 MHYT: Bacterial signalling protein N terminal repeat; InterPro: IPR005330 The MHYT (~190-residue) domain is thought to function as a sensor domain in bacterial signalling proteins, and is named after its conserved amino acid motif, methionine, histidine, and tyrosine. The MHYT domain consists of six predicted transmembrane (TM) segments, connected by short arginine-rich cytoplasmic and periplasmic loops rich in charged residues. Three of the TM segments contain the MHYT motif near the outer face of the cytoplasmic membrane. The MHYT domain has been found in several phylogenetically distinct bacteria, either as a separate, single domain, or in combination with other domains, such as a LytTR-type DNA-binding helix-turn-helix (IPR007492 from INTERPRO), or the signalling domains histidine kinase (IPR005467 from INTERPRO), GGDEF (IPR000160 from INTERPRO), EAL (IPR001633 from INTERPRO) or PAS (IPR000014 from INTERPRO). Proteins containing this repeat include CoxC (Q9KX27 from SWISSPROT) and CoxH (Q9KX23 from SWISSPROT) from Pseudomonas carboxydovorans.
Probab=37.27 E-value=1e+02 Score=19.15 Aligned_cols=25 Identities=16% Similarity=-0.126 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhh
Q psy17239 9 KDYILGTLILIALTICWYVYRQKES 33 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWfAy~Qnk~ 33 (115)
.-...+.|+++++.++|.+..---.
T Consensus 24 ~~~~~~~S~~iav~~~~~al~~~~~ 48 (62)
T PF03707_consen 24 DPPLTLLSILIAVLASAVALWILFR 48 (62)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888888887777644333
No 277
>PF13514 AAA_27: AAA domain
Probab=37.22 E-value=1.6e+02 Score=28.24 Aligned_cols=48 Identities=25% Similarity=0.430 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 33 SSQQHLRRMMKDMEGLQRA-------ELDLANLQKELERARQEQENAASEKIKLE 80 (115)
Q Consensus 33 ~Sk~hl~kmmkDle~Lq~A-------E~sL~dLQ~~Le~A~~e~~~v~~EK~~LE 80 (115)
.++.-|+..++.++.+++. ...+.++++.++.++.+......+..++.
T Consensus 147 g~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~ 201 (1111)
T PF13514_consen 147 GRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELR 201 (1111)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777776666543 22334444444444444444444444333
No 278
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=37.10 E-value=1.8e+02 Score=21.86 Aligned_cols=11 Identities=45% Similarity=0.742 Sum_probs=5.8
Q ss_pred HHHHHHHHhhC
Q psy17239 105 LEVCQLKQEIE 115 (115)
Q Consensus 105 lEv~~LkqEie 115 (115)
.++..|+.+||
T Consensus 138 ~ei~~lr~~iE 148 (177)
T PF07798_consen 138 TEIANLRTEIE 148 (177)
T ss_pred HHHHHHHHHHH
Confidence 35555555553
No 279
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=37.09 E-value=1.7e+02 Score=21.67 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 31 KESSQQHLRRMMKD-----MEGLQRAELDLANLQKELERARQEQENAASEKIKLERRL 83 (115)
Q Consensus 31 nk~Sk~hl~kmmkD-----le~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl 83 (115)
++.....|.+++.+ -.+|..|+....+.++.++.++..-..+..|...+=.+.
T Consensus 37 ~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a 94 (174)
T PRK07352 37 YYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADA 94 (174)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777778888876 457788888888888888888888777777766665433
No 280
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=36.98 E-value=58 Score=29.46 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=16.3
Q ss_pred HhHHHHHHhhhhhHHHHHHHHHHhhHHHHHH
Q psy17239 21 LTICWYVYRQKESSQQHLRRMMKDMEGLQRA 51 (115)
Q Consensus 21 ~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~A 51 (115)
+++.-+|-.+.-...+.|..+.|.|+.|+..
T Consensus 16 ~s~~~~a~~~~~~~~qkie~L~kql~~Lk~q 46 (489)
T PF11853_consen 16 LSLPAAAMADDIDLLQKIEALKKQLEELKAQ 46 (489)
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444666666666666543
No 281
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=36.89 E-value=1.8e+02 Score=21.89 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=7.8
Q ss_pred HHHHHHhHHHHHHh
Q psy17239 16 LILIALTICWYVYR 29 (115)
Q Consensus 16 slvia~~GcWfAy~ 29 (115)
++++|++++|..|.
T Consensus 36 ~~l~~~~~~~~~~~ 49 (199)
T PF10112_consen 36 SLLIGAVAFAVVYL 49 (199)
T ss_pred HHHHHHHHHHHHHH
Confidence 55566655555444
No 282
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=36.87 E-value=11 Score=35.21 Aligned_cols=68 Identities=34% Similarity=0.446 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHHHHHhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy17239 28 YRQKESSQQHLRRMMKDMEGLQR-----------AELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDL 96 (115)
Q Consensus 28 y~Qnk~Sk~hl~kmmkDle~Lq~-----------AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l 96 (115)
..+.+..+.+|+.+-.+++.-++ +|..+..|+.+|+.++.....+..-+..+|.++.+ +......+
T Consensus 573 ~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e---~~~~~~~l 649 (859)
T PF01576_consen 573 QKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDE---LQERLNEL 649 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 34556666667766666666553 34445668888888888888888888888888887 55555555
Q ss_pred cc
Q psy17239 97 KS 98 (115)
Q Consensus 97 ~~ 98 (115)
+.
T Consensus 650 ~~ 651 (859)
T PF01576_consen 650 TS 651 (859)
T ss_dssp --
T ss_pred Hh
Confidence 44
No 283
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=36.85 E-value=1.4e+02 Score=21.91 Aligned_cols=21 Identities=14% Similarity=-0.047 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhHHHHHHhhhh
Q psy17239 12 ILGTLILIALTICWYVYRQKE 32 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk 32 (115)
.+++.++.++.|+--.+.|..
T Consensus 16 ~i~v~~~~~~~~~~s~l~~~~ 36 (168)
T PF01956_consen 16 TIVVFLIAILRGLISELLQKF 36 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 455555666666665666554
No 284
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=36.80 E-value=2e+02 Score=22.20 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 50 RAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 50 ~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
.|+....+.+++|..|+.+-+....|
T Consensus 59 eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 59 EVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566778888888777766555
No 285
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=36.80 E-value=99 Score=24.29 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=14.4
Q ss_pred HHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy17239 15 TLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERA 65 (115)
Q Consensus 15 ~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A 65 (115)
++.++.++|| +- ...+..+-..++.-...|..+.+-|+.|+..
T Consensus 2 ~~~~~lLagC-~~-------~~~~e~~~~~le~a~~~Ek~~~~~~k~L~~l 44 (204)
T PF10368_consen 2 IASALLLAGC-TG-------KKPEEQLYDQLEKAVKQEKPFKEQQKKLNEL 44 (204)
T ss_dssp -----------HH-------HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHhc-CC-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667889 32 2233334444444444455555555444443
No 286
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=36.30 E-value=23 Score=27.37 Aligned_cols=24 Identities=21% Similarity=0.010 Sum_probs=19.4
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHh
Q psy17239 6 SHVKDYILGTLILIALTICWYVYR 29 (115)
Q Consensus 6 n~~KD~~Lv~slvia~~GcWfAy~ 29 (115)
|+||=..++++.++.++++|++++
T Consensus 1 N~WK~aF~~Lla~~l~~~~~~~~~ 24 (187)
T PF09911_consen 1 NWWKWAFLILLALNLAFVIVVFFR 24 (187)
T ss_pred ChHHHHHHHHHHHHHHHHhheeeE
Confidence 789988888888888888887765
No 287
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=36.28 E-value=1.6e+02 Score=20.93 Aligned_cols=42 Identities=21% Similarity=0.401 Sum_probs=22.9
Q ss_pred HHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHH
Q psy17239 19 IALTICWYVYRQKESSQQHLRRMMKDMEGLQR----AELDLANLQKELERARQE 68 (115)
Q Consensus 19 ia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~----AE~sL~dLQ~~Le~A~~e 68 (115)
..++||= +-..+.++..|..+|+. ++....+++...+.|++|
T Consensus 15 ~LLaGCA--------s~~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~E 60 (85)
T PRK09973 15 CLLSGCV--------NEQKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSE 60 (85)
T ss_pred HHHHHcC--------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568993 22477777777777753 233333444444444443
No 288
>PRK14758 hypothetical protein; Provisional
Probab=35.85 E-value=52 Score=19.11 Aligned_cols=21 Identities=33% Similarity=0.350 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHhHHHHH
Q psy17239 7 HVKDYILGTLILIALTICWYV 27 (115)
Q Consensus 7 ~~KD~~Lv~slvia~~GcWfA 27 (115)
|-=.++|+++||-|++..-|+
T Consensus 5 YrFEliLivlIlCalia~~fy 25 (27)
T PRK14758 5 YRFEFILIILILCALIAARFY 25 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334689999999999877664
No 289
>TIGR01707 gspI general secretion pathway protein I. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=35.69 E-value=1.5e+02 Score=20.68 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=16.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy17239 23 ICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANL 58 (115)
Q Consensus 23 GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dL 58 (115)
+++-++.+.. .+..++....-.+.-||..+.++
T Consensus 20 ~~~~~~~~~~---~~~~~l~~~~~A~~vAen~l~~~ 52 (101)
T TIGR01707 20 ALISSVGGQT---NAIGRLRDKTLALWIADNRLAEL 52 (101)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 34444544555666666555443
No 290
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=35.69 E-value=1.3e+02 Score=22.82 Aligned_cols=51 Identities=22% Similarity=0.442 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 35 QQHLRRMMKDMEG-LQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 35 k~hl~kmmkDle~-Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+.+++.+...+|. =.-.++.+.|++..|.+++..-..+...+..+++++.+
T Consensus 11 ~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~ 62 (221)
T PF04012_consen 11 KANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDE 62 (221)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555444432 14457778888888888888888888888888877766
No 291
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=35.56 E-value=97 Score=29.45 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 48 LQRAELDLANLQKELERARQEQENAASEKIKL 79 (115)
Q Consensus 48 Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~L 79 (115)
|+.+|+.+.+||.+|+.+++-..-+.++-...
T Consensus 626 L~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~ 657 (769)
T PF05911_consen 626 LKESEQKLEELQSELESAKESNSLAETQLKAM 657 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777776666666553333
No 292
>PTZ00370 STEVOR; Provisional
Probab=35.55 E-value=48 Score=28.40 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHH
Q psy17239 10 DYILGTLILIALTICWYVYRQKESSQQHL 38 (115)
Q Consensus 10 D~~Lv~slvia~~GcWfAy~Qnk~Sk~hl 38 (115)
-++|+++.|+.|+..-|-|+-+|+|=.|=
T Consensus 261 alvllil~vvliilYiwlyrrRK~swkhe 289 (296)
T PTZ00370 261 ALVLLILAVVLIILYIWLYRRRKNSWKHE 289 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 36777777888888877888888886663
No 293
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=35.35 E-value=1.4e+02 Score=22.58 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=29.0
Q ss_pred CCchHHHHHHHHHHHH--HhHHHHHHhhhhhHHHHHHHHHHhhHHHH
Q psy17239 5 TSHVKDYILGTLILIA--LTICWYVYRQKESSQQHLRRMMKDMEGLQ 49 (115)
Q Consensus 5 ~n~~KD~~Lv~slvia--~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq 49 (115)
.+..+|+.+++++++. +|.-|==|.|++++..+-++|..=++++-
T Consensus 43 ~tKyRDL~II~~L~ll~l~giq~~~y~~~~~~~~q~~~~~~fi~~vA 89 (149)
T PF11694_consen 43 DTKYRDLSIIALLLLLLLIGIQYSDYQQNQNQHSQSSQMVHFIESVA 89 (149)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHH
Confidence 3556776665544333 33446678888888888888877666554
No 294
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=35.27 E-value=1.9e+02 Score=21.72 Aligned_cols=48 Identities=19% Similarity=0.381 Sum_probs=39.0
Q ss_pred HhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 28 YRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 28 y~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
.-+....+..|..-=+.|+.|+..-...++||++++..+.+......+
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~ 73 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEE 73 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888999999999999998888889999998888877654433
No 295
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=35.09 E-value=32 Score=26.12 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHhhhhhHH
Q psy17239 6 SHVKDYILGTLILIALTICWYVYRQKESSQ 35 (115)
Q Consensus 6 n~~KD~~Lv~slvia~~GcWfAy~Qnk~Sk 35 (115)
++++=++.++++++.++.+|.+++=++.+|
T Consensus 16 ~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tK 45 (149)
T PF11694_consen 16 DYLRYILIIILLLVLIFFFIKYLRNRLDTK 45 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 445555566666667777888877766666
No 296
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=34.85 E-value=51 Score=24.83 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=22.4
Q ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHhhhhhHH
Q psy17239 3 NSTSHVKDYILGTLILIALTICWYVYRQKESSQ 35 (115)
Q Consensus 3 ~~~n~~KD~~Lv~slvia~~GcWfAy~Qnk~Sk 35 (115)
|+..+|+=+++++++..|+|+ |+++.=-+.++
T Consensus 25 Pst~RWRiiL~v~svct~v~A-~~wL~Dp~ts~ 56 (125)
T PF09771_consen 25 PSTTRWRIILVVVSVCTAVGA-WHWLMDPETSQ 56 (125)
T ss_pred CcchhHHHHHHHHHHHHHHHH-HHHhcCccccc
Confidence 566788888888888888877 55555444333
No 297
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=34.81 E-value=43 Score=22.64 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhh
Q psy17239 9 KDYILGTLILIALTICWYVYRQKE 32 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWfAy~Qnk 32 (115)
=|.+.++-+++++.||=|.+.|.+
T Consensus 28 ~~YL~~~mlmi~v~~~~~ql~~~~ 51 (65)
T PF12534_consen 28 FDYLVLLMLMIFVFGGTFQLTQDK 51 (65)
T ss_pred HHHHHHHHHHHHHHHhhHHhcccc
Confidence 377888888889988888776655
No 298
>PRK10815 sensor protein PhoQ; Provisional
Probab=34.79 E-value=2.9e+02 Score=23.54 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHH
Q psy17239 13 LGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGL 48 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~L 48 (115)
+++.++++++.+|++.+. +-..++++.+.+..+
T Consensus 197 ~~~~lll~~~l~~l~~~~---~~rpi~~L~~~~~~l 229 (485)
T PRK10815 197 LLANLLLVIPLLWLAAWW---SLRPIEALAKQVREL 229 (485)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 344455566666766543 234455555555444
No 299
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=34.74 E-value=58 Score=17.85 Aligned_cols=7 Identities=0% Similarity=-0.211 Sum_probs=3.2
Q ss_pred HHHHHHh
Q psy17239 23 ICWYVYR 29 (115)
Q Consensus 23 GcWfAy~ 29 (115)
|.|+..+
T Consensus 24 ~~~~~~~ 30 (34)
T TIGR01167 24 GGLLLRK 30 (34)
T ss_pred HHHHhee
Confidence 4444443
No 300
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=34.74 E-value=45 Score=22.25 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhHHHHH
Q psy17239 11 YILGTLILIALTICWYV 27 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfA 27 (115)
|++++.+|+.+-|.||-
T Consensus 5 f~~ti~lvv~LYgY~yh 21 (56)
T TIGR02736 5 FAFTLLLVIFLYAYIYH 21 (56)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67888889999999984
No 301
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=34.70 E-value=3.3e+02 Score=24.18 Aligned_cols=30 Identities=13% Similarity=0.239 Sum_probs=13.3
Q ss_pred HHHHHhHHHHHHhhhhhHHHHHHHHHHhhH
Q psy17239 17 ILIALTICWYVYRQKESSQQHLRRMMKDME 46 (115)
Q Consensus 17 lvia~~GcWfAy~Qnk~Sk~hl~kmmkDle 46 (115)
+++.++++|++|.=.|+-..-+.++...++
T Consensus 185 ~~~l~~~~~~~~~~~r~i~~pl~~l~~~~~ 214 (919)
T PRK11107 185 LLGIGLALLFAFRLMRDVTGPIRNMVNTVD 214 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555444444444444444333
No 302
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=34.52 E-value=1.4e+02 Score=19.96 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy17239 55 LANLQKELERARQE 68 (115)
Q Consensus 55 L~dLQ~~Le~A~~e 68 (115)
..-||.+|..+-..
T Consensus 7 ~~~Lr~rLd~~~rk 20 (69)
T PF14197_consen 7 IATLRNRLDSLTRK 20 (69)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444443333
No 303
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=34.45 E-value=2.4e+02 Score=22.46 Aligned_cols=7 Identities=0% Similarity=-0.012 Sum_probs=2.8
Q ss_pred HhHHHHH
Q psy17239 21 LTICWYV 27 (115)
Q Consensus 21 ~~GcWfA 27 (115)
++++||+
T Consensus 168 ~~~~~~~ 174 (435)
T PRK09467 168 AGGWLFI 174 (435)
T ss_pred HHHHHHH
Confidence 3334443
No 304
>COG3326 Predicted membrane protein [Function unknown]
Probab=34.08 E-value=31 Score=24.99 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhh
Q psy17239 9 KDYILGTLILIALTICWYVYRQKES 33 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWfAy~Qnk~ 33 (115)
-+.+|+..+++|-.|.|+|-+.-|+
T Consensus 39 E~~Ll~~allGG~~Ga~~a~~~frH 63 (94)
T COG3326 39 EKTLLLIALLGGWFGAWLAMQLFRH 63 (94)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHh
Confidence 3578888999999999999776554
No 305
>KOG0971|consensus
Probab=34.05 E-value=1.2e+02 Score=30.31 Aligned_cols=46 Identities=33% Similarity=0.473 Sum_probs=28.0
Q ss_pred HHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 40 RMMKDMEGLQR----AELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 40 kmmkDle~Lq~----AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
||-=.+|+|+- .-..-.+||++|.+|+.|.+.+..=|...-++|.|
T Consensus 259 kmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad 308 (1243)
T KOG0971|consen 259 KMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMAD 308 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555542 22345678888888888777766655555555554
No 306
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=33.99 E-value=1.5e+02 Score=20.14 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=10.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Q psy17239 38 LRRMMKDMEGLQRAELDLANLQKEL 62 (115)
Q Consensus 38 l~kmmkDle~Lq~AE~sL~dLQ~~L 62 (115)
++++++|...=-..|..+.++++.+
T Consensus 38 ~r~~~~~~~~~~~~e~~~~el~~~~ 62 (80)
T TIGR01410 38 LRGMASDVKNELDEELKAQELDEQL 62 (80)
T ss_pred HHHhhHhHHHHHHHHhchHhHHHHH
Confidence 3444444433323333344444433
No 307
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=33.82 E-value=70 Score=21.16 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=8.3
Q ss_pred HHHHHHHHHhHHHH
Q psy17239 13 LGTLILIALTICWY 26 (115)
Q Consensus 13 Lv~slvia~~GcWf 26 (115)
-+++|++-++|.+.
T Consensus 7 wivli~lv~~gy~~ 20 (54)
T PF13260_consen 7 WIVLIVLVVVGYFC 20 (54)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666543
No 308
>KOG4484|consensus
Probab=33.71 E-value=1.2e+02 Score=24.73 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=27.8
Q ss_pred HHHHHHHHhhHHHHH-----------HHHHHHHHHHHHHHHHHHH
Q psy17239 36 QHLRRMMKDMEGLQR-----------AELDLANLQKELERARQEQ 69 (115)
Q Consensus 36 ~hl~kmmkDle~Lq~-----------AE~sL~dLQ~~Le~A~~e~ 69 (115)
.-|++=|+|+|.|-+ -|..|.+|+++|.-++..+
T Consensus 27 s~iK~qiRd~eRlLkk~~LP~~Vr~e~er~L~~Lk~ql~~~~l~~ 71 (199)
T KOG4484|consen 27 SSIKNQIRDLERLLKKKDLPPEVREELERKLQDLKKQLDNHELLA 71 (199)
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999887 5788999999998776554
No 309
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=33.44 E-value=61 Score=20.05 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHH
Q psy17239 10 DYILGTLILIALTICWYVYRQKESSQ 35 (115)
Q Consensus 10 D~~Lv~slvia~~GcWfAy~Qnk~Sk 35 (115)
-++|.+.-|...|-.-.||.|-|..+
T Consensus 8 GiVlGli~vtl~Glfv~Ay~QY~Rg~ 33 (37)
T PF02529_consen 8 GIVLGLIPVTLAGLFVAAYLQYRRGN 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS--
T ss_pred hHHHHhHHHHHHHHHHHHHHHHhccc
Confidence 45666666666677788999987654
No 310
>KOG0999|consensus
Probab=33.44 E-value=70 Score=30.36 Aligned_cols=58 Identities=28% Similarity=0.412 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHhhhcccccccccccccHHH
Q psy17239 47 GLQRAELDLANLQKELERARQEQENAASEKIKLE---RRLQE-HQALQGDASDLKSSSAFSDLE 106 (115)
Q Consensus 47 ~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE---~kl~~-~~~~~~~~~~l~~~~~~sdlE 106 (115)
.|+.-++.|++.|.+.++-...+..-..-+.++| ++|++ +-..++...||-+ .||+||
T Consensus 115 eLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rlls--eYSELE 176 (772)
T KOG0999|consen 115 ELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLS--EYSELE 176 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 3455566667777666666555554444455555 33443 3346666666655 666665
No 311
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.28 E-value=1.5e+02 Score=20.60 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 55 LANLQKELERARQEQENAASEKIKLERRLQEHQ 87 (115)
Q Consensus 55 L~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~ 87 (115)
+.++..+++..+.+.+......+.|+..++++-
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~ 37 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAE 37 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777776633
No 312
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=33.25 E-value=48 Score=23.69 Aligned_cols=23 Identities=13% Similarity=0.382 Sum_probs=9.5
Q ss_pred HHHHHHHHHhH--HHHHHhhhhhHH
Q psy17239 13 LGTLILIALTI--CWYVYRQKESSQ 35 (115)
Q Consensus 13 Lv~slvia~~G--cWfAy~Qnk~Sk 35 (115)
|+++||++++. +.|+.+=+|..+
T Consensus 4 l~~iii~~i~l~~~~~~~~~rRR~r 28 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYCHNRRRRR 28 (130)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333433333 344444444443
No 313
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.20 E-value=2.8e+02 Score=24.76 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 46 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQ 84 (115)
Q Consensus 46 e~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~ 84 (115)
+.|......+..+.+++...+.+......+-.++|.++.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~ 76 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIA 76 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555544444444444443
No 314
>PLN00063 photosystem II core complex proteins psbY; Provisional
Probab=33.14 E-value=66 Score=26.10 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRRMMK 43 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmk 43 (115)
++++++.+...+.|-.|.=-+.+-.++++|..
T Consensus 88 ~liVl~Pil~AigWalfNIg~~Al~Qlq~m~s 119 (194)
T PLN00063 88 GLALLLPIIPAIAWVLFNILQPALNQVNKMRE 119 (194)
T ss_pred cchhHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 46778888889999999999999999999985
No 315
>PF13974 YebO: YebO-like protein
Probab=33.12 E-value=30 Score=24.33 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=12.4
Q ss_pred HHHHHHHHhHHHHHHhhhhhHH
Q psy17239 14 GTLILIALTICWYVYRQKESSQ 35 (115)
Q Consensus 14 v~slvia~~GcWfAy~Qnk~Sk 35 (115)
+++++++++|.+..|-=||.|-
T Consensus 2 ~~~~~~~lv~livWFFVnRaSv 23 (80)
T PF13974_consen 2 VVSVLVLLVGLIVWFFVNRASV 23 (80)
T ss_pred eehHHHHHHHHHHHHHHHHHHH
Confidence 4556666666544444467663
No 316
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=33.11 E-value=1.1e+02 Score=22.89 Aligned_cols=28 Identities=14% Similarity=-0.016 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLR 39 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~ 39 (115)
.+...++.++.|.|++-+|..+.=..+.
T Consensus 31 tl~lvi~t~~lG~~l~r~~G~~~l~~~~ 58 (148)
T PRK11463 31 TLLLVILTSVLGVLLARSQGFKTLLRAQ 58 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999888776544443
No 317
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=32.90 E-value=2.3e+02 Score=21.83 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=52.2
Q ss_pred hhhhhHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy17239 29 RQKESSQQHLRRMMKDME-----GLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASD 95 (115)
Q Consensus 29 ~Qnk~Sk~hl~kmmkDle-----~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~ 95 (115)
..-|.|+..+....+|.. ..+.|=..-.++|.+|.-.++.-...-..-..||++++.....=..|+.
T Consensus 55 ~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~ 126 (159)
T PF05384_consen 55 KRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAEN 126 (159)
T ss_pred HHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888988888884 3667778889999999999999888888899999998874443333333
No 318
>PF10548 P22_AR_C: P22AR C-terminal domain; InterPro: IPR018876 This entry represents the carboxy-terminal domain of the Enterobacteria phage P22 antirepressor ((P03037 from SWISSPROT) []. It is found associated with IPR018875 from INTERPRO.
Probab=32.82 E-value=73 Score=21.56 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=23.4
Q ss_pred HHHHhHHHHHHhhhhhHHHHHHHHHHhhHH
Q psy17239 18 LIALTICWYVYRQKESSQQHLRRMMKDMEG 47 (115)
Q Consensus 18 via~~GcWfAy~Qnk~Sk~hl~kmmkDle~ 47 (115)
+.-+..+|||..+.+..=.||...++.+.|
T Consensus 13 l~~L~Wlw~~~~~m~~~~~~l~p~L~~lgS 42 (74)
T PF10548_consen 13 LQSLVWLWFAAERMRELCQELYPALKALGS 42 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345678999999888888888888777654
No 319
>PF04507 DUF576: Protein of unknown function, DUF576; InterPro: IPR007595 This family contains several uncharacterised staphylococcal proteins. Members of this family are mostly predicted lipoproteins, found in Staphylococcus aureus but are also found clustered in Staphylococcus epidermidis.; PDB: 4EG9_A 4EGD_B.
Probab=32.64 E-value=15 Score=30.89 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=0.0
Q ss_pred chHHHHHH---HHHHHHHhHHHHHH
Q psy17239 7 HVKDYILG---TLILIALTICWYVY 28 (115)
Q Consensus 7 ~~KD~~Lv---~slvia~~GcWfAy 28 (115)
|.|-++|. ++|++.|+||++--
T Consensus 3 ~~kkl~L~Is~liLii~I~GCg~~~ 27 (257)
T PF04507_consen 3 HSKKLALYISLLILIIFIGGCGMMN 27 (257)
T ss_dssp -------------------------
T ss_pred chheehHHHHHHhHheeeeeccCcc
Confidence 34555553 33445589999853
No 320
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=32.61 E-value=1.8e+02 Score=20.47 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 10 DYILGTLILIALTICWYVYRQKESSQQHLRRMMKD-----MEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQ 84 (115)
Q Consensus 10 D~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkD-----le~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~ 84 (115)
|+.+.+.++.-++-+|+. ++..-.-|.++|.. -++|..|+....+.++.+..++..-..+..+...+-..-+
T Consensus 5 ~~t~~~~~i~flil~~ll---~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~ 81 (140)
T PRK07353 5 DATLPLMAVQFVLLTFIL---NALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAE 81 (140)
T ss_pred chhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555445444443 56666668888866 3568888888888888888888888888887666654433
No 321
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.57 E-value=76 Score=24.57 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 59 QKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 59 Q~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+.+++..+.+......+...|+.++.+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444443
No 322
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=32.48 E-value=47 Score=27.75 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhHHHHHHhh
Q psy17239 11 YILGTLILIALTICWYVYRQ 30 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Q 30 (115)
+.|.++++.+++|++|++.|
T Consensus 208 iFLY~~l~a~~~l~l~~~~~ 227 (285)
T PF03896_consen 208 IFLYLFLAALGVLGLYFVYQ 227 (285)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 323
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=32.41 E-value=15 Score=25.91 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHH
Q psy17239 12 ILGTLILIALTICWYVY 28 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy 28 (115)
+.++++++++++.||.+
T Consensus 2 iI~~l~v~~~~~~~~~~ 18 (113)
T PF07009_consen 2 IIIILIVLSLIALIFFW 18 (113)
T ss_dssp -----------------
T ss_pred EEehhHHHHHHHHHHHh
Confidence 45566666666666654
No 324
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.39 E-value=1.2e+02 Score=26.96 Aligned_cols=12 Identities=0% Similarity=0.202 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHH
Q psy17239 32 ESSQQHLRRMMK 43 (115)
Q Consensus 32 k~Sk~hl~kmmk 43 (115)
|+....|.++-.
T Consensus 25 r~~~~~i~~Le~ 36 (569)
T PRK04778 25 KRNYKRIDELEE 36 (569)
T ss_pred HHHHHHHHHHHH
Confidence 444555555433
No 325
>COG2815 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.34 E-value=16 Score=30.66 Aligned_cols=18 Identities=11% Similarity=0.261 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhHHHHHHh
Q psy17239 12 ILGTLILIALTICWYVYR 29 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~ 29 (115)
+|+++++.++++|||+..
T Consensus 4 ~~~~~~~~~v~~~~~~~~ 21 (303)
T COG2815 4 LLVSLVVAGVLLATFFPV 21 (303)
T ss_pred eehhHHHHHHHhhheeee
Confidence 577888899999999988
No 326
>KOG3030|consensus
Probab=32.16 E-value=57 Score=27.67 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=17.6
Q ss_pred CCCCCchHHHHHHHHHHHHHhHHHHHHhh
Q psy17239 2 INSTSHVKDYILGTLILIALTICWYVYRQ 30 (115)
Q Consensus 2 ~~~~n~~KD~~Lv~slvia~~GcWfAy~Q 30 (115)
.|-.|||-|++... +||++..||.|.+
T Consensus 234 ~DYkHHwsDV~aG~--liG~~~A~~~~~~ 260 (317)
T KOG3030|consen 234 SDYKHHWSDVLAGA--LIGAFVAYFLYRY 260 (317)
T ss_pred cccccccHHHHHHH--HHHHHHHHHHHhh
Confidence 57789999987554 3455555555554
No 327
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=32.13 E-value=52 Score=21.69 Aligned_cols=21 Identities=29% Similarity=0.839 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHh
Q psy17239 9 KDYILGTLILIALTICWYVYR 29 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWfAy~ 29 (115)
|-+.+.++.++.-..||+++.
T Consensus 2 ~~~~l~~~~~llg~~~l~i~~ 22 (63)
T PF13127_consen 2 KKYILSLILLLLGVVCLFIFN 22 (63)
T ss_pred cchHHHHHHHHHHHHHHHHHh
Confidence 456677777778888999874
No 328
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=31.73 E-value=1.4e+02 Score=18.86 Aligned_cols=26 Identities=8% Similarity=0.340 Sum_probs=13.3
Q ss_pred HHHHHHHhh-HHHHHHHHHHHHHHHHH
Q psy17239 37 HLRRMMKDM-EGLQRAELDLANLQKEL 62 (115)
Q Consensus 37 hl~kmmkDl-e~Lq~AE~sL~dLQ~~L 62 (115)
.+-.++|++ .++.....+..+.+++.
T Consensus 21 kLP~~~r~lG~~ir~fk~~~~~~~~~~ 47 (53)
T PF02416_consen 21 KLPELARSLGKAIREFKKAINEAKEEI 47 (53)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 366777776 33444444555555543
No 329
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=31.72 E-value=1.6e+02 Score=22.39 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy17239 10 DYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKEL 62 (115)
Q Consensus 10 D~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~L 62 (115)
|-+....|++++++.|++|.=++++ -+||.+++.|.-+.
T Consensus 57 ~~~~l~~ll~~~~~~~~~~~~~kK~--------------eKAEkefhaLRcEi 95 (130)
T PF10864_consen 57 SPVHLFWLLALAFSYWAMYYLKKKE--------------EKAEKEFHALRCEI 95 (130)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhH--------------HHHHHHHHHHHHHH
Confidence 3345556666666777776655443 37899998887654
No 330
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=31.72 E-value=39 Score=26.37 Aligned_cols=30 Identities=7% Similarity=0.140 Sum_probs=15.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 38 LRRMMKDMEGLQRAELDLANLQKELERARQ 67 (115)
Q Consensus 38 l~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~ 67 (115)
++.+-+=+..=.+|++-+..+.++++.++.
T Consensus 131 i~~lg~~~G~~~~A~~li~~~~~~v~~i~~ 160 (289)
T TIGR03659 131 ITELGEKYGREEQAEKLVKEINEKEAEVKK 160 (289)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 333433334445666666666666655553
No 331
>PRK09039 hypothetical protein; Validated
Probab=31.51 E-value=3.2e+02 Score=23.00 Aligned_cols=48 Identities=21% Similarity=0.387 Sum_probs=29.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 36 QHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEH 86 (115)
Q Consensus 36 ~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~ 86 (115)
..|.++-..++.|+.. +..++..|..++..-......-..|++++..+
T Consensus 137 ~~V~~L~~qI~aLr~Q---la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 137 AQVELLNQQIAALRRQ---LAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666554 66666666666666655555556666666553
No 332
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.43 E-value=2e+02 Score=26.88 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy17239 69 QENAASEKIKLERRL 83 (115)
Q Consensus 69 ~~~v~~EK~~LE~kl 83 (115)
.+.+...++.||++.
T Consensus 538 ~~e~~~~~~~l~~~~ 552 (771)
T TIGR01069 538 LKEQEKLKKELEQEM 552 (771)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333444333
No 333
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=31.41 E-value=1.8e+02 Score=20.51 Aligned_cols=8 Identities=13% Similarity=0.306 Sum_probs=3.8
Q ss_pred HHHHhhhh
Q psy17239 25 WYVYRQKE 32 (115)
Q Consensus 25 WfAy~Qnk 32 (115)
|..+++++
T Consensus 19 ~pl~r~~~ 26 (117)
T TIGR03142 19 LPLLRRRR 26 (117)
T ss_pred HHHhcCcc
Confidence 44555543
No 334
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=31.34 E-value=16 Score=23.47 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHH
Q psy17239 11 YILGTLILIALTICWYVY 28 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy 28 (115)
|++.+++++.+++|++.+
T Consensus 1 ~~~~ili~~vi~~l~~~~ 18 (110)
T PF06480_consen 1 IILYILIILVILLLFNFF 18 (110)
T ss_dssp ------------------
T ss_pred CcceehhHHHHHHHHHHH
Confidence 355666777777777776
No 335
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=31.34 E-value=74 Score=20.97 Aligned_cols=16 Identities=25% Similarity=0.833 Sum_probs=10.9
Q ss_pred HHHHHHhHHHHHHhhh
Q psy17239 16 LILIALTICWYVYRQK 31 (115)
Q Consensus 16 slvia~~GcWfAy~Qn 31 (115)
.|..++.-.||.|.|-
T Consensus 20 Fl~~~~~F~~F~~Kqi 35 (54)
T PF06716_consen 20 FLFCLVVFIWFVYKQI 35 (54)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566789999883
No 336
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.15 E-value=2e+02 Score=26.97 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=3.7
Q ss_pred HHHHHHHh
Q psy17239 106 EVCQLKQE 113 (115)
Q Consensus 106 Ev~~LkqE 113 (115)
|+.+|+.|
T Consensus 553 E~~~lr~e 560 (697)
T PF09726_consen 553 ELKKLRRE 560 (697)
T ss_pred HHHHHHHH
Confidence 45555443
No 337
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=30.77 E-value=2.6e+02 Score=24.63 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 45 MEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQ 87 (115)
Q Consensus 45 le~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~ 87 (115)
...++.+...+.+++++|.+.+.+......+...|+.++.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 160 VKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777787777777777777777777777633
No 338
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=30.75 E-value=46 Score=28.50 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHH
Q psy17239 10 DYILGTLILIALTICWYVYRQKESSQQH 37 (115)
Q Consensus 10 D~~Lv~slvia~~GcWfAy~Qnk~Sk~h 37 (115)
-++|+++.|+.|+..-|-|+-+|+|=.|
T Consensus 265 alvllil~vvliiLYiWlyrrRK~swkh 292 (295)
T TIGR01478 265 ALVLIILTVVLIILYIWLYRRRKKSWKH 292 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3677778888888887888888888766
No 339
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=30.67 E-value=1.6e+02 Score=19.67 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=5.5
Q ss_pred hhhhHHHHHHHH
Q psy17239 30 QKESSQQHLRRM 41 (115)
Q Consensus 30 Qnk~Sk~hl~km 41 (115)
|+..+...+..-
T Consensus 32 ~k~~~~k~i~~y 43 (85)
T PF11337_consen 32 QKHKAEKAIDWY 43 (85)
T ss_pred hHHHHHHHHHHH
Confidence 555444444443
No 340
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=30.44 E-value=1.6e+02 Score=23.62 Aligned_cols=34 Identities=35% Similarity=0.571 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 52 ELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 52 E~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
++.+.|++..|.+|+..--.+...+..+|+++.+
T Consensus 30 ~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~ 63 (225)
T COG1842 30 EQAIRDMESELAKARQALAQAIARQKQLERKLEE 63 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 341
>KOG1853|consensus
Probab=30.42 E-value=2.9e+02 Score=23.95 Aligned_cols=51 Identities=27% Similarity=0.430 Sum_probs=31.0
Q ss_pred hhhhHHHHHHHHHHhhH----HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q psy17239 30 QKESSQQHLRRMMKDME----GLQRA----ELDLANLQKELERARQEQENAASE---KIKLE 80 (115)
Q Consensus 30 Qnk~Sk~hl~kmmkDle----~Lq~A----E~sL~dLQ~~Le~A~~e~~~v~~E---K~~LE 80 (115)
|-+.-+..+++-++.|| .|.+| +-+|.|+-.+|.+|-+-+-....| |++|=
T Consensus 102 qt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~ll 163 (333)
T KOG1853|consen 102 QTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLL 163 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444555555555544 24444 457999999999998876555443 55443
No 342
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=30.27 E-value=19 Score=21.41 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=5.7
Q ss_pred HhHHHHHH
Q psy17239 21 LTICWYVY 28 (115)
Q Consensus 21 ~~GcWfAy 28 (115)
+||||.|.
T Consensus 5 Lg~~~lAi 12 (30)
T PF11466_consen 5 LGGWWLAI 12 (30)
T ss_dssp -SSHHHHH
T ss_pred hhhHHHHH
Confidence 58899885
No 343
>TIGR00247 conserved hypothetical protein, YceG family. This uncharacterized protein family, found in three of four microbial genomes, virtually always once per genome, includes YceG from Escherichia coli. This protein is encoded next to PabC, 4-amino-4-deoxychorismate lyase, in E. coli and numerous other proteobacteria, but that proximity is not conserved in other lineages. Numerous members of this family have been misannotated as aminodeoxychorismate lyase, apparently because of promiximty to PabC.
Probab=30.26 E-value=51 Score=27.46 Aligned_cols=19 Identities=5% Similarity=0.338 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhHHHHHHh
Q psy17239 11 YILGTLILIALTICWYVYR 29 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~ 29 (115)
+++++++++|++++||++.
T Consensus 10 ~~~vl~~~~~~~~~~~~~~ 28 (342)
T TIGR00247 10 LLFVLFFILGSILSYKIYF 28 (342)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5677777788888877763
No 344
>KOG0137|consensus
Probab=30.20 E-value=4.2e+02 Score=25.10 Aligned_cols=94 Identities=20% Similarity=0.147 Sum_probs=62.8
Q ss_pred HHHHHHHHhHHHHHHhhh----hhHHH----HHHHHHHh-----------------hHHHH----HHHHHHHHHHHHHHH
Q psy17239 14 GTLILIALTICWYVYRQK----ESSQQ----HLRRMMKD-----------------MEGLQ----RAELDLANLQKELER 64 (115)
Q Consensus 14 v~slvia~~GcWfAy~Qn----k~Sk~----hl~kmmkD-----------------le~Lq----~AE~sL~dLQ~~Le~ 64 (115)
|..+.||+.|||.|=+-. +..|. ||..---| =.+|+ ..|.++.-+|.=+++
T Consensus 449 vLrlfiAltg~q~ag~~l~~~~r~~kn~n~gli~~~~~~~~~~~g~~~~~~ls~hvhpsL~~saq~~e~~~~~~~~~Ve~ 528 (634)
T KOG0137|consen 449 VLRLFIALTGLQHAGKHLATGVRALKNANPGLIGGKVSRLRSLRGPGTGLYLSEHVHPSLQDSAQKLESSLARFQQVVEK 528 (634)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcCCcchhcchhhhhhhccCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999986543 33442 44333444 23454 557788888988898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------hhcccccccc-cccccHHHH
Q psy17239 65 ARQEQENAASEKIKLERRLQEHQA-------LQGDASDLKS-SSAFSDLEV 107 (115)
Q Consensus 65 A~~e~~~v~~EK~~LE~kl~~~~~-------~~~~~~~l~~-~~~~sdlEv 107 (115)
+---|....++-|-+=+++-+... .-+.|.|-.. -.+++|-|+
T Consensus 529 ll~k~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl 579 (634)
T KOG0137|consen 529 LLTKHGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHEL 579 (634)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHH
Confidence 888888888888888788776211 4455555444 335777776
No 345
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=30.15 E-value=44 Score=18.95 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhHH
Q psy17239 11 YILGTLILIALTIC 24 (115)
Q Consensus 11 ~~Lv~slvia~~Gc 24 (115)
+++|+.|++-++||
T Consensus 8 livVLFILLiIvG~ 21 (24)
T PF09680_consen 8 LIVVLFILLIIVGA 21 (24)
T ss_pred hHHHHHHHHHHhcc
Confidence 45555666666676
No 346
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=29.90 E-value=1.3e+02 Score=24.91 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhh
Q psy17239 11 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDM 45 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDl 45 (115)
+++++++++++.++||..+.-...=..+..-|+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~r~i~~pl~~l~~~~~~i 190 (565)
T PRK10935 156 LGLILILTLVFFTVRFTRRQVVAPLNQLVTASQQI 190 (565)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 347
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=29.78 E-value=1.4e+02 Score=21.25 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17239 51 AELDLANLQKELERARQEQENAASEKIKLERRLQEHQAL 89 (115)
Q Consensus 51 AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~ 89 (115)
.+.+|..++..++.-+++-+........|+..+.++..+
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~ 42 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTA 42 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777666664443
No 348
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=29.75 E-value=2.7e+02 Score=21.69 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 46 EGLQRAELDLANLQKELERARQEQEN 71 (115)
Q Consensus 46 e~Lq~AE~sL~dLQ~~Le~A~~e~~~ 71 (115)
+.|++|+....+|++.|..-..++..
T Consensus 62 epL~~a~~e~~eL~k~L~~y~kdK~~ 87 (201)
T PF13851_consen 62 EPLKKAEEEVEELRKQLKNYEKDKQS 87 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655544443
No 349
>TIGR01655 yxeA_fam conserved hypothetical protein TIGR01655. This model represents a family of small (about 115 amino acids) uncharacterized proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.
Probab=29.68 E-value=33 Score=24.54 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=8.0
Q ss_pred HHHHHHHHHhHHHHHH
Q psy17239 13 LGTLILIALTICWYVY 28 (115)
Q Consensus 13 Lv~slvia~~GcWfAy 28 (115)
|++++++.++++|+.+
T Consensus 8 li~~ivv~~~~~~~~~ 23 (114)
T TIGR01655 8 LLALIVVITIVGIEIS 23 (114)
T ss_pred HHHHHHhHHHhhheee
Confidence 3344555555555553
No 350
>PRK05255 hypothetical protein; Provisional
Probab=29.68 E-value=1.9e+02 Score=22.66 Aligned_cols=71 Identities=18% Similarity=0.313 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc-cccccHHHHHHH
Q psy17239 32 ESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKS-SSAFSDLEVCQL 110 (115)
Q Consensus 32 k~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~-~~~~sdlEv~~L 110 (115)
|.--++|.++|++.+ .+.++.-|+.-+..+......-..||+=....+. ++.+-+.. ...|-+.+.++|
T Consensus 70 RRqlqyIGKLmR~~d--------~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~--~~d~al~e~~~~~P~~DrQ~L 139 (171)
T PRK05255 70 RRQLQYIGKLMRNED--------VEPIRAALDKLKNKHNQETARFHKLERWRDRLLA--EGDDALTEFLEEYPDADRQQL 139 (171)
T ss_pred HHHHHHHHHHHhhCC--------HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHCchhhHHHH
Confidence 334467889999852 3455555665555555555555666655444332 23344444 456667778887
Q ss_pred HH
Q psy17239 111 KQ 112 (115)
Q Consensus 111 kq 112 (115)
+|
T Consensus 140 Rq 141 (171)
T PRK05255 140 RQ 141 (171)
T ss_pred HH
Confidence 65
No 351
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=29.57 E-value=72 Score=20.80 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 33 SSQQHLRRMMKDMEGLQRAELDLANLQKELERARQ 67 (115)
Q Consensus 33 ~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~ 67 (115)
..-.|.--.-=|=+-|-+.|.||.++.++|+.++.
T Consensus 22 ~F~~~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~~~ 56 (57)
T PF12592_consen 22 LFHQHQPHLFIDSEWLAAIEASLQQLAEQLEQLKQ 56 (57)
T ss_dssp HHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHhhcCCCcCcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334444444567789999999999999998763
No 352
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=29.48 E-value=81 Score=24.27 Aligned_cols=39 Identities=28% Similarity=0.343 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 45 MEGLQRAELDLANLQKELERARQEQENAASEKIKLERRL 83 (115)
Q Consensus 45 le~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl 83 (115)
+|++-|--.+|..||+.+..-+-|++..+.||.+..|--
T Consensus 22 ~es~drIKeEf~~lqaq~hslk~E~eKla~EK~emqrhy 60 (135)
T PF03920_consen 22 SESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHY 60 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcchhhcccchHHHHH
Confidence 788999999999999999999999999999999887654
No 353
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=29.34 E-value=4e+02 Score=23.57 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=38.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q psy17239 36 QHLRRMMKDMEGLQRAELDLANLQKELER---------ARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 36 ~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~---------A~~e~~~v~~EK~~LE~kl~~ 85 (115)
.++..+..-...+.+++..+.+.+..|.. |++|-.....++..||++|+-
T Consensus 43 a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~ 101 (363)
T COG0216 43 AELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKI 101 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777788888888877764 788888888888888888875
No 354
>KOG0804|consensus
Probab=29.13 E-value=1.5e+02 Score=27.17 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17239 58 LQKELERARQEQENAAS 74 (115)
Q Consensus 58 LQ~~Le~A~~e~~~v~~ 74 (115)
+|++|..-++++.....
T Consensus 394 ~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 394 CQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444443333
No 355
>KOG0964|consensus
Probab=29.11 E-value=2.8e+02 Score=28.05 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 32 ESSQQHLRRMMKDME-GLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 32 k~Sk~hl~kmmkDle-~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+........+|.|++ .+..-|.+|..|-++.+.++.+......+|.+||=+..+
T Consensus 257 ~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kd 311 (1200)
T KOG0964|consen 257 IDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKD 311 (1200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 344556677777775 577788899999999999999999999999999977766
No 356
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=28.95 E-value=61 Score=27.75 Aligned_cols=9 Identities=33% Similarity=1.021 Sum_probs=7.0
Q ss_pred HhHHHHHHh
Q psy17239 21 LTICWYVYR 29 (115)
Q Consensus 21 ~~GcWfAy~ 29 (115)
-|+||-.|+
T Consensus 156 AG~~Wa~YI 164 (292)
T COG5006 156 AGACWALYI 164 (292)
T ss_pred HhHHHHHHH
Confidence 367998887
No 357
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=28.94 E-value=52 Score=22.04 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhHHHHHHh
Q psy17239 12 ILGTLILIALTICWYVYR 29 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~ 29 (115)
++.+||+++.+|.|+.+.
T Consensus 7 Lipvsi~l~~v~l~~flW 24 (58)
T COG3197 7 LIPVSILLGAVGLGAFLW 24 (58)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666655555444333
No 358
>PRK03918 chromosome segregation protein; Provisional
Probab=28.93 E-value=4e+02 Score=24.11 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=9.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Q psy17239 39 RRMMKDMEGLQRAELDLANLQKELE 63 (115)
Q Consensus 39 ~kmmkDle~Lq~AE~sL~dLQ~~Le 63 (115)
+.+-..++.|...-..+.+.++++.
T Consensus 172 ~~~~~~~~~l~~~l~~l~~i~~~l~ 196 (880)
T PRK03918 172 KEIKRRIERLEKFIKRTENIEELIK 196 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344333
No 359
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=28.80 E-value=38 Score=26.12 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhHH------HHHHhhhhhHHHHHHHHHHhhH
Q psy17239 9 KDYILGTLILIALTIC------WYVYRQKESSQQHLRRMMKDME 46 (115)
Q Consensus 9 KD~~Lv~slvia~~Gc------WfAy~Qnk~Sk~hl~kmmkDle 46 (115)
+-++++++++++++|| +|+ --|.---..|..|+-
T Consensus 2 rk~l~~~~l~l~LaGCAt~~~gnf~----~~s~~~a~~iA~D~v 41 (151)
T PRK13883 2 RKIVLLALLALALGGCATSQYGNFV----QASAADQQKLATDAV 41 (151)
T ss_pred hhHHHHHHHHHHHhcccCCCCCccc----ccCHHHHHHHHHHHH
Confidence 4467777778888999 555 245555556666664
No 360
>CHL00176 ftsH cell division protein; Validated
Probab=28.73 E-value=88 Score=28.63 Aligned_cols=60 Identities=17% Similarity=0.464 Sum_probs=32.1
Q ss_pred CCchHHHHHHHH-HHHHHhHHHHHHhhhhh--------------HHHHHHH------HHHhhHHHHHHHHHHHHHHHHHH
Q psy17239 5 TSHVKDYILGTL-ILIALTICWYVYRQKES--------------SQQHLRR------MMKDMEGLQRAELDLANLQKELE 63 (115)
Q Consensus 5 ~n~~KD~~Lv~s-lvia~~GcWfAy~Qnk~--------------Sk~hl~k------mmkDle~Lq~AE~sL~dLQ~~Le 63 (115)
++.|.++++.++ -++.++|.||.+..... |+.++.+ -..|+-++..+...+.++-.-|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~~lk 203 (638)
T CHL00176 124 KSNIVTILSNLLLPLILIGVLWFFFQRSSNFKGGPGQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVSFLK 203 (638)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHHHHh
Confidence 355777776654 35666777777644311 1122221 22556666666666666654444
Q ss_pred H
Q psy17239 64 R 64 (115)
Q Consensus 64 ~ 64 (115)
.
T Consensus 204 ~ 204 (638)
T CHL00176 204 K 204 (638)
T ss_pred C
Confidence 3
No 361
>PF00361 Oxidored_q1: NADH-Ubiquinone/plastoquinone (complex I), various chains; InterPro: IPR001750 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This domain is found in the NADH:ubiquinone oxidoreductase (complex I) and NADH-plastoquinone oxidoreductase [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport, 0055114 oxidation-reduction process; PDB: 3RKO_D.
Probab=28.59 E-value=65 Score=24.83 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=24.0
Q ss_pred CCchHHHHHHHHHHHHHhHHHHHHhhhhh
Q psy17239 5 TSHVKDYILGTLILIALTICWYVYRQKES 33 (115)
Q Consensus 5 ~n~~KD~~Lv~slvia~~GcWfAy~Qnk~ 33 (115)
.+.+..+++++.++..+.|+++|..|+.-
T Consensus 139 ~~~~~~~l~~~~~~s~l~g~~~al~q~d~ 167 (270)
T PF00361_consen 139 SPFWSNILLILGLISILYGSIMALKQKDL 167 (270)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTT-SBH
T ss_pred ccccccccccccchhhhhhHHhhhccccc
Confidence 45678899999999999999999999753
No 362
>PRK12667 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=28.59 E-value=89 Score=27.19 Aligned_cols=26 Identities=12% Similarity=0.017 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHHHhHHHHHHhhhh
Q psy17239 7 HVKDYILGTLILIALTICWYVYRQKE 32 (115)
Q Consensus 7 ~~KD~~Lv~slvia~~GcWfAy~Qnk 32 (115)
.+..+++++.++..+.|+.+|..|+.
T Consensus 293 ~~~~~l~~l~~~s~l~g~l~al~Q~d 318 (520)
T PRK12667 293 ALSPILIILGAVSAIIGALMMVVQKD 318 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677788888899999999999984
No 363
>PF13994 PgaD: PgaD-like protein
Probab=28.52 E-value=79 Score=23.03 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHH
Q psy17239 11 YILGTLILIALTICWYVYRQKESSQQH 37 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~h 37 (115)
.++++.+..++-.+|..|.+.|+....
T Consensus 67 y~~i~~~~a~~Li~Wa~yn~~Rf~~~~ 93 (138)
T PF13994_consen 67 YLLIALVNAVILILWAKYNRLRFRGRR 93 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 345566666677799999998876544
No 364
>PF10853 DUF2650: Protein of unknown function (DUF2650); InterPro: IPR022559 This region is found in proteins with unknown function in metazoa.
Probab=28.20 E-value=46 Score=20.38 Aligned_cols=15 Identities=7% Similarity=0.348 Sum_probs=12.2
Q ss_pred chHHHHHHHHHHHHH
Q psy17239 7 HVKDYILGTLILIAL 21 (115)
Q Consensus 7 ~~KD~~Lv~slvia~ 21 (115)
++..+++++++++|+
T Consensus 23 ~lq~Wv~v~l~v~~v 37 (38)
T PF10853_consen 23 RLQIWVIVLLAVLGV 37 (38)
T ss_pred HHHHHHHHHHHHHhc
Confidence 467889999888876
No 365
>KOG0639|consensus
Probab=28.20 E-value=1.3e+02 Score=28.45 Aligned_cols=37 Identities=32% Similarity=0.430 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 45 MEGLQRAELDLANLQKELERARQEQENAASEKIKLER 81 (115)
Q Consensus 45 le~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~ 81 (115)
+|+|-|-..+|..||+....-+-|++.++.||-+..|
T Consensus 22 ~etldRIKdEfqflqaqyhslkleceKlA~EKteMqR 58 (705)
T KOG0639|consen 22 LETLDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQR 58 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 6889999999999999999999999999999988765
No 366
>PHA03231 glycoprotein BALF4; Provisional
Probab=28.16 E-value=1.6e+02 Score=28.48 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=18.8
Q ss_pred CchHHHHHHHHHHHHHhHHHHHHhhhh
Q psy17239 6 SHVKDYILGTLILIALTICWYVYRQKE 32 (115)
Q Consensus 6 n~~KD~~Lv~slvia~~GcWfAy~Qnk 32 (115)
|..--++.+++++.+|+..|++|+-.+
T Consensus 702 NPFGg~~iillvia~vv~v~l~~rr~~ 728 (829)
T PHA03231 702 NPFGGLAIGLLVIAVLVAVFLAYRRVR 728 (829)
T ss_pred CchHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 444556677777777888899887544
No 367
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=27.69 E-value=1.7e+02 Score=20.70 Aligned_cols=16 Identities=6% Similarity=0.241 Sum_probs=6.1
Q ss_pred HHHHHHHhhHHHHHHH
Q psy17239 37 HLRRMMKDMEGLQRAE 52 (115)
Q Consensus 37 hl~kmmkDle~Lq~AE 52 (115)
.+.+.|.....-+.+.
T Consensus 23 d~~~v~~~~~~~k~~~ 38 (158)
T PF03938_consen 23 DVDKVFQESPAGKDAQ 38 (158)
T ss_dssp -HHHHHHHHHHHHTHH
T ss_pred eHHHHHHhCHHHHHHH
Confidence 3344444444333333
No 368
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=27.69 E-value=1.9e+02 Score=20.42 Aligned_cols=30 Identities=37% Similarity=0.499 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 55 LANLQKELERARQEQENAASEKIKLERRLQ 84 (115)
Q Consensus 55 L~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~ 84 (115)
|+.|+.+++.++.+-+........|+.+++
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k 32 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKK 32 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555554443
No 369
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=27.50 E-value=27 Score=26.74 Aligned_cols=17 Identities=24% Similarity=0.215 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhHHHHH
Q psy17239 11 YILGTLILIALTICWYV 27 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfA 27 (115)
+++++-+.+|+.|+|.-
T Consensus 48 lvllvGiaMAv~GYwp~ 64 (141)
T PF10177_consen 48 LVLLVGIAMAVLGYWPK 64 (141)
T ss_pred HHHHHhhHhheeecccc
Confidence 45566677888999876
No 370
>PRK06459 hydrogenase 4 subunit B; Validated
Probab=27.50 E-value=80 Score=28.66 Aligned_cols=26 Identities=19% Similarity=0.080 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHHHHhHHHHHHhhhh
Q psy17239 7 HVKDYILGTLILIALTICWYVYRQKE 32 (115)
Q Consensus 7 ~~KD~~Lv~slvia~~GcWfAy~Qnk 32 (115)
+|..+++++.++.++.|..+|+.|+.
T Consensus 224 ~~~~~l~~lg~lS~i~G~l~Al~Q~d 249 (585)
T PRK06459 224 YFGLTILAIGAFSILFGALYAYVSEN 249 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 67888888889999999999999985
No 371
>PLN03074 auxin influx permease; Provisional
Probab=27.33 E-value=41 Score=29.17 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=18.0
Q ss_pred hHHHHHHH-HHHHH-HhHHHHHHhh
Q psy17239 8 VKDYILGT-LILIA-LTICWYVYRQ 30 (115)
Q Consensus 8 ~KD~~Lv~-slvia-~~GcWfAy~Q 30 (115)
++|+++++ ..++| +.|+|.+..+
T Consensus 426 ~~n~~iiv~~~~~g~~~G~~asi~~ 450 (473)
T PLN03074 426 VVNAFVVVWVLVVGFGFGGWASMTN 450 (473)
T ss_pred hhhhHHHHhhhhHhhccchHHHHHH
Confidence 89999986 35554 7999998765
No 372
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=27.15 E-value=99 Score=20.42 Aligned_cols=20 Identities=25% Similarity=0.327 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy17239 45 MEGLQRAELDLANLQKELER 64 (115)
Q Consensus 45 le~Lq~AE~sL~dLQ~~Le~ 64 (115)
|..+++....+.++|++|..
T Consensus 1 m~~~~~~~~~~~~~~~~l~~ 20 (93)
T PF02575_consen 1 MKQAQEMQEKMEEAQEELAE 20 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhc
Confidence 34455555555555555543
No 373
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=27.12 E-value=2.8e+02 Score=21.00 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=24.1
Q ss_pred HHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 37 HLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASE 75 (115)
Q Consensus 37 hl~kmmkDle~L-q~AE~sL~dLQ~~Le~A~~e~~~v~~E 75 (115)
.|...+.+.+.+ ..|+..+.+.++.|..|+.|-.....+
T Consensus 66 ~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~ 105 (181)
T PRK13454 66 TITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAE 105 (181)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 456777777788888888776655544
No 374
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.11 E-value=3.4e+02 Score=23.31 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 53 LDLANLQKELERARQEQENAASEKIKLERR 82 (115)
Q Consensus 53 ~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~k 82 (115)
+.+...|.+|..+++..+....--..+-+.
T Consensus 273 ~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~ 302 (359)
T PF10498_consen 273 QEYRSAQDELSEVQEKYKQASEGVSERTRE 302 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345566666766666665554443333333
No 375
>PF02566 OsmC: OsmC-like protein; InterPro: IPR003718 Osmotically inducible protein C (OsmC) is a stress-induced protein found in Escherichia coli. The transcription of the osmC gene of E. coli is regulated as a function of the phase of growth and is induced during the late exponential phase when the growth rate slows before entry into stationary phase. The transcription is initiated by two overlapping promoters, osmCp1 and osmCp2 []. An organic hydroperoxide detoxification protein (OHR) from Xanthomonas campestris pv. phaseoli is highly induced by organic hydroperoxides, weakly induced by H2O2, and not induced at all by a superoxide generator. Ohr may be a new type of organic hydroperoxide detoxification protein [, ].; GO: 0006950 response to stress; PDB: 2D7V_A 2BJO_A 1USP_A 2PN2_A 2QL8_A 1N2F_A 1UKK_A 1VLA_D 3CJE_A 2ONF_B ....
Probab=27.06 E-value=59 Score=20.98 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=14.3
Q ss_pred HHHHHHhHHHHHHhhhhhHH
Q psy17239 16 LILIALTICWYVYRQKESSQ 35 (115)
Q Consensus 16 slvia~~GcWfAy~Qnk~Sk 35 (115)
+++.|++||.....+.-..+
T Consensus 11 lllaala~C~~~~~~~~a~~ 30 (100)
T PF02566_consen 11 LLLAALASCFAMTLRMVAEK 30 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57789999988776554443
No 376
>PF14182 YgaB: YgaB-like protein
Probab=27.01 E-value=1.2e+02 Score=21.50 Aligned_cols=11 Identities=64% Similarity=0.694 Sum_probs=6.7
Q ss_pred HHHHHHHHHHH
Q psy17239 55 LANLQKELERA 65 (115)
Q Consensus 55 L~dLQ~~Le~A 65 (115)
|..||.+|++-
T Consensus 16 LL~LQsElERC 26 (79)
T PF14182_consen 16 LLFLQSELERC 26 (79)
T ss_pred HHHHHHHHHHH
Confidence 45667776653
No 377
>PRK10506 hypothetical protein; Provisional
Probab=26.99 E-value=2.6e+02 Score=20.62 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q psy17239 56 ANLQKELERARQ 67 (115)
Q Consensus 56 ~dLQ~~Le~A~~ 67 (115)
.+++.-|..||.
T Consensus 48 ~~l~~~l~~ar~ 59 (162)
T PRK10506 48 QQLLDFLLRLQE 59 (162)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 378
>PRK15396 murein lipoprotein; Provisional
Probab=26.94 E-value=2.2e+02 Score=19.70 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=15.0
Q ss_pred HHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHH
Q psy17239 18 LIALTICWYVYRQKESSQQHLRRMMKDMEGLQ 49 (115)
Q Consensus 18 via~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq 49 (115)
+..++||= +-..+.++-.|++.|.
T Consensus 15 ~~LLaGCA--------s~~kvd~LssqV~~L~ 38 (78)
T PRK15396 15 STLLAGCS--------SNAKIDQLSSDVQTLN 38 (78)
T ss_pred HHHHHHcC--------CchhHHHHHHHHHHHH
Confidence 34578993 2246667777777665
No 379
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=26.92 E-value=58 Score=28.39 Aligned_cols=11 Identities=9% Similarity=0.371 Sum_probs=4.2
Q ss_pred HHHHHHHhhHH
Q psy17239 37 HLRRMMKDMEG 47 (115)
Q Consensus 37 hl~kmmkDle~ 47 (115)
.+..+.+.|..
T Consensus 259 ~i~~L~~~l~~ 269 (582)
T PF09731_consen 259 RIDALQKELAE 269 (582)
T ss_pred HHHHHHHHHHH
Confidence 33334333333
No 380
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=26.88 E-value=59 Score=26.83 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=8.6
Q ss_pred HHHHHHHHHhHHHHH
Q psy17239 13 LGTLILIALTICWYV 27 (115)
Q Consensus 13 Lv~slvia~~GcWfA 27 (115)
+.-++|||++|.|-+
T Consensus 13 ~~~~~~~~~~~~~~~ 27 (243)
T PF05279_consen 13 FTWFLVLALLGVWSS 27 (243)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344556666666644
No 381
>KOG0850|consensus
Probab=26.87 E-value=39 Score=28.26 Aligned_cols=16 Identities=25% Similarity=0.740 Sum_probs=12.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHH
Q psy17239 23 ICWYVYRQKESSQQHLRRMMK 43 (115)
Q Consensus 23 GcWfAy~Qnk~Sk~hl~kmmk 43 (115)
=+|| |||.|| .+||||
T Consensus 167 KIWF---QNrRSK--~KKl~k 182 (245)
T KOG0850|consen 167 KIWF---QNRRSK--FKKLKK 182 (245)
T ss_pred hhhh---hhhHHH--HHHHHh
Confidence 4788 999886 678888
No 382
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.81 E-value=3.1e+02 Score=21.69 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHhhHHH
Q psy17239 33 SSQQHLRRMMKDMEGL 48 (115)
Q Consensus 33 ~Sk~hl~kmmkDle~L 48 (115)
+++.-+-++=+.++.|
T Consensus 90 ~~~~rlp~le~el~~l 105 (206)
T PRK10884 90 SLRTRVPDLENQVKTL 105 (206)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4444555555555444
No 383
>PRK13561 putative diguanylate cyclase; Provisional
Probab=26.75 E-value=4.2e+02 Score=22.97 Aligned_cols=11 Identities=27% Similarity=0.776 Sum_probs=4.7
Q ss_pred HHhHHHHHHhh
Q psy17239 20 ALTICWYVYRQ 30 (115)
Q Consensus 20 a~~GcWfAy~Q 30 (115)
++...|+..+.
T Consensus 160 ~~~l~~~~~~~ 170 (651)
T PRK13561 160 TVAISWCINRL 170 (651)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 384
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=26.70 E-value=2.7e+02 Score=20.62 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 46 EGLQRAELDLANLQKELERARQEQENAASEKIKLERR 82 (115)
Q Consensus 46 e~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~k 82 (115)
.+|..||....+..+.++.++..-..+..|.+.+=.+
T Consensus 48 ~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~ 84 (167)
T PRK14475 48 AELDEAQRLREEAQALLADVKAEREEAERQAAAMLAA 84 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777776665433
No 385
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=26.34 E-value=1.1e+02 Score=25.80 Aligned_cols=54 Identities=28% Similarity=0.345 Sum_probs=24.3
Q ss_pred HHHHHHHHHhHHHHHH----hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy17239 13 LGTLILIALTICWYVY----RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERAR 66 (115)
Q Consensus 13 Lv~slvia~~GcWfAy----~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~ 66 (115)
+++++|+|++=+||-+ .+.|=||+-+++=.|+.||=..-......+|.++...+
T Consensus 193 ~~~~~via~~D~~~qr~~~~k~lkMskqEvK~E~Ke~EGdP~iK~rrR~~~re~~~~~ 250 (343)
T PF01312_consen 193 LAALLVIAAIDFAYQRFEFEKKLKMSKQEVKDEHKESEGDPEIKSRRRQLQREMARRR 250 (343)
T ss_dssp ------------------------HHHHHH--HHHCCCC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhh
Confidence 4445555655555544 44567899999999999998877777777777765433
No 386
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional
Probab=26.30 E-value=43 Score=25.24 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhHHHHHHh
Q psy17239 11 YILGTLILIALTICWYVYR 29 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~ 29 (115)
-++.+++++++++||.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (260)
T PRK15010 4 SILALSLLVGLSAAASSYA 22 (260)
T ss_pred HHHHHHHHHHHhccchhhh
Confidence 4566778888888887765
No 387
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.24 E-value=4.1e+02 Score=26.09 Aligned_cols=51 Identities=10% Similarity=0.167 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 35 QQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 35 k~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+..|+.+-.+++.|..-......+..+|...+........+...++.++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~ 249 (1311)
T TIGR00606 199 GQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDP 249 (1311)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555544444445555555555555555555555544443
No 388
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=26.13 E-value=65 Score=24.98 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHH-hHHHHH
Q psy17239 8 VKDYILGTLILIAL-TICWYV 27 (115)
Q Consensus 8 ~KD~~Lv~slvia~-~GcWfA 27 (115)
.+=++..++.++++ +++|+.
T Consensus 4 ~~~~~~~il~~~~l~l~~W~l 24 (192)
T PRK10893 4 TRRWVIILLALIALVLIGWNL 24 (192)
T ss_pred hHHHHHHHHHHHHHHHHHhhc
Confidence 34453444444444 444443
No 389
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=26.08 E-value=2.4e+02 Score=19.82 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHH
Q psy17239 9 KDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGL 48 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~L 48 (115)
-|+++.++++.-++-|.+.|..-..-...++++.+.+-=+
T Consensus 66 ~n~lf~~~i~~ll~~~~~l~~~is~le~~i~~L~qeiAl~ 105 (115)
T PF10066_consen 66 PNLLFYLGILFLLVIIFSLYVRISRLEEKIKRLAQEIALL 105 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888887777777777777665433
No 390
>PRK03100 sec-independent translocase; Provisional
Probab=26.01 E-value=3e+02 Score=20.92 Aligned_cols=9 Identities=33% Similarity=0.567 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q psy17239 55 LANLQKELE 63 (115)
Q Consensus 55 L~dLQ~~Le 63 (115)
|.|+.+.++
T Consensus 59 ~~dlrk~l~ 67 (136)
T PRK03100 59 FDDLRKPLG 67 (136)
T ss_pred HHHHHHHHH
Confidence 555555444
No 391
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=25.94 E-value=3.4e+02 Score=21.57 Aligned_cols=61 Identities=25% Similarity=0.292 Sum_probs=38.8
Q ss_pred HHhhhhhHHHHHHHHHHhhHHHHHH---------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy17239 27 VYRQKESSQQHLRRMMKDMEGLQRA---------ELDLANLQKELERARQEQ--ENAASEKIKLERRLQEHQ 87 (115)
Q Consensus 27 Ay~Qnk~Sk~hl~kmmkDle~Lq~A---------E~sL~dLQ~~Le~A~~e~--~~v~~EK~~LE~kl~~~~ 87 (115)
.+.+..+...++.+|++=+..-|.| |..-.+|++.|+..+.+. ..+..+|..+|+..++++
T Consensus 32 ~e~ke~H~~e~~~kl~el~~e~Q~~QlK~LKe~~EkE~KElkK~L~~kr~e~I~~k~~~dK~e~er~KrEin 103 (185)
T PF08703_consen 32 KELKEEHLKEQFQKLEELARECQAAQLKKLKETCEKETKELKKKLDRKRLESIKEKKTKDKDEQERLKREIN 103 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 4566777778888887766665554 445577888887775543 335566777777777743
No 392
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=25.89 E-value=32 Score=26.14 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHhHH
Q psy17239 8 VKDYILGTLILIALTIC 24 (115)
Q Consensus 8 ~KD~~Lv~slvia~~Gc 24 (115)
||++.++++.+..++||
T Consensus 1 Mrk~~~~~l~~~lLvGC 17 (123)
T COG5633 1 MRKLCLLSLALLLLVGC 17 (123)
T ss_pred CceehHHHHHHHHhhcc
Confidence 56777878888888898
No 393
>PRK10337 sensor protein QseC; Provisional
Probab=25.86 E-value=3.5e+02 Score=21.68 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy17239 47 GLQRAELDLANLQKELERARQE 68 (115)
Q Consensus 47 ~Lq~AE~sL~dLQ~~Le~A~~e 68 (115)
.+..-..+|..+..+++...+.
T Consensus 215 Ei~~l~~~~n~~~~~l~~~~~~ 236 (449)
T PRK10337 215 EVRPLVEALNQLFARTHAMMVR 236 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556676776666665444
No 394
>PRK11627 hypothetical protein; Provisional
Probab=25.86 E-value=59 Score=25.49 Aligned_cols=18 Identities=22% Similarity=0.371 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHhHHH
Q psy17239 8 VKDYILGTLILIALTICW 25 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcW 25 (115)
+|=++|.++.++.++||=
T Consensus 2 lkklll~l~a~~~L~gCA 19 (192)
T PRK11627 2 LKKILFPLVALFMLAGCA 19 (192)
T ss_pred hHHHHHHHHHHHHHHhhc
Confidence 577888888777799993
No 395
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=25.86 E-value=62 Score=22.34 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhHH
Q psy17239 9 KDYILGTLILIALTICWYVYRQKESSQ 35 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWfAy~Qnk~Sk 35 (115)
-|++|++.-|..+|+.-||.-=+++..
T Consensus 3 ~d~iLi~ICVaii~lIlY~iYnr~~~~ 29 (68)
T PF05961_consen 3 GDFILIIICVAIIGLILYGIYNRKKTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 589999988888888888865554444
No 396
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=25.81 E-value=48 Score=26.77 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=7.6
Q ss_pred HHHHHHHHhHHHHHHhhh
Q psy17239 14 GTLILIALTICWYVYRQK 31 (115)
Q Consensus 14 v~slvia~~GcWfAy~Qn 31 (115)
||+|||.+++.-+.+-..
T Consensus 22 IV~lLIiiva~~lf~~~~ 39 (217)
T PF07423_consen 22 IVSLLIIIVAYQLFFGGD 39 (217)
T ss_pred HHHHHHHHHhhhheecCC
Confidence 344444444443334343
No 397
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=25.69 E-value=3.4e+02 Score=21.48 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=13.7
Q ss_pred HHhhHHHHH----HHHHHHHHHHHHHHHHH
Q psy17239 42 MKDMEGLQR----AELDLANLQKELERARQ 67 (115)
Q Consensus 42 mkDle~Lq~----AE~sL~dLQ~~Le~A~~ 67 (115)
-+|.+...+ ++.+-..||+++.+.-+
T Consensus 72 ~~dpd~v~~rqEa~eaAR~RmQEE~dakA~ 101 (190)
T PF06936_consen 72 KKDPDVVVRRQEAMEAARRRMQEELDAKAE 101 (190)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555433 34455566666665443
No 398
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=25.62 E-value=1.8e+02 Score=27.64 Aligned_cols=53 Identities=30% Similarity=0.442 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccHHH
Q psy17239 49 QRAELDLANLQKELERA-------RQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLE 106 (115)
Q Consensus 49 q~AE~sL~dLQ~~Le~A-------~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~~~~~sdlE 106 (115)
+.+...+.+.+.+.++- ..+++....++..|-.++++ .+....||=. .|++||
T Consensus 44 k~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke---~K~rE~rll~--dyselE 103 (717)
T PF09730_consen 44 KQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKE---YKFREARLLQ--DYSELE 103 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhh--hhHHHH
Confidence 33444444444444433 34444444445555455555 6666666655 566655
No 399
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=25.61 E-value=73 Score=20.12 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhHHHHH
Q psy17239 11 YILGTLILIALTICWYV 27 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfA 27 (115)
+.+++++++-.+|.|++
T Consensus 7 ~~f~i~~~~~~iGl~~~ 23 (53)
T PF05360_consen 7 ISFGISIVLMLIGLWNA 23 (53)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 35677888888898876
No 400
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=25.59 E-value=23 Score=30.13 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHhhhhhH
Q psy17239 14 GTLILIALTICWYVYRQKESS 34 (115)
Q Consensus 14 v~slvia~~GcWfAy~Qnk~S 34 (115)
|+++++||||.-| |++++.|
T Consensus 235 iILVLLaVGGLLf-Yr~rrRs 254 (285)
T PF05337_consen 235 IILVLLAVGGLLF-YRRRRRS 254 (285)
T ss_dssp ---------------------
T ss_pred hhhhhhhccceee-ecccccc
Confidence 4456677777655 5555544
No 401
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=25.54 E-value=2e+02 Score=21.66 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy17239 49 QRAELDLANLQKELE 63 (115)
Q Consensus 49 q~AE~sL~dLQ~~Le 63 (115)
+..+..+.-+++.|+
T Consensus 53 ~~~~~~i~~l~~~L~ 67 (198)
T PRK10370 53 QTPEAQLQALQDKIR 67 (198)
T ss_pred hhHHHHHHHHHHHHH
Confidence 333444444444443
No 402
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=25.43 E-value=1.5e+02 Score=26.51 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=37.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 23 ICWYVYRQKESSQQHLRRMMKDM--------------EGLQRAELDLANLQKELERARQEQENAASEKIKLER 81 (115)
Q Consensus 23 GcWfAy~Qnk~Sk~hl~kmmkDl--------------e~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~ 81 (115)
..|+++.-.+.....+.+.++++ +.++..+..+.+++++++..+.+.+....+..++..
T Consensus 178 ~~~~vvv~~~~~~~~~~~~l~~~~f~~~~~p~~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~ 250 (646)
T PRK05771 178 YVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELL 250 (646)
T ss_pred cEEEEEEEEhhhHHHHHHHHHHCCCEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777666666777777663 566666666666666666666666665555444433
No 403
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.40 E-value=89 Score=25.97 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhh
Q psy17239 8 VKDYILGTLILIALTICWYVYRQK 31 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcWfAy~Qn 31 (115)
+-.|++++++++++.+.|+++.+.
T Consensus 10 v~~f~~~~l~~~~~~~~~~~~~~~ 33 (359)
T COG1463 10 VGLFLLLGLLAVLLFVLWLATLPG 33 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 456666677777777777776654
No 404
>PF12130 DUF3585: Protein of unknown function (DUF3585); InterPro: IPR022735 This domain is found in eukaryotes. It is typically between 135 and 149 amino acids in length and is found associated with PF00307 from PFAM.
Probab=25.39 E-value=1.6e+02 Score=21.90 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17239 55 LANLQKELERARQEQENAASEKIKLERRLQEHQA 88 (115)
Q Consensus 55 L~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~ 88 (115)
..+.|.+|+.-...+..+...-..||+.||..++
T Consensus 4 ~q~Iq~el~~ie~~~~~lE~~g~~lE~~LR~~~~ 37 (142)
T PF12130_consen 4 AQEIQRELEEIEEEQRELEERGVELEKQLRSAEE 37 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3578888988888888888889999999998443
No 405
>KOG4112|consensus
Probab=25.36 E-value=87 Score=23.10 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=16.0
Q ss_pred HHHHHHHHhHHHHHHhhhhhHH
Q psy17239 14 GTLILIALTICWYVYRQKESSQ 35 (115)
Q Consensus 14 v~slvia~~GcWfAy~Qnk~Sk 35 (115)
+++.+.|++||-|-|.|-..|.
T Consensus 30 ~ilti~aiVg~i~Gf~~Qqls~ 51 (101)
T KOG4112|consen 30 LILTIGAIVGFIYGFAQQQLSV 51 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788889988887765553
No 406
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=25.32 E-value=72 Score=27.20 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhh
Q psy17239 11 YILGTLILIALTICWYVYRQKES 33 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~ 33 (115)
+++++.++++++|++|+|.....
T Consensus 42 ~Il~~~~~~~~~g~~ya~~~pp~ 64 (377)
T PRK10381 42 TIIAITFAFACAGLLISFILPQK 64 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhCCce
Confidence 45566777788888888876543
No 407
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=25.27 E-value=1.9e+02 Score=26.22 Aligned_cols=67 Identities=33% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHhhC
Q psy17239 46 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115 (115)
Q Consensus 46 e~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~~~~~sdlEv~~LkqEie 115 (115)
..+..++..+..++..+..++.+......+...++..+.. ++.+...+........-++.+++.+++
T Consensus 684 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~e~~ 750 (1179)
T TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE---LSRQISALRKDLARLEAEVEQLEERIA 750 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 408
>KOG0612|consensus
Probab=25.19 E-value=4.2e+02 Score=27.22 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 58 LQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 58 LQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
.++++.......+.+..+-..++++|.+
T Consensus 499 ~~ek~~~~~~~~~~l~~~~~~~~eele~ 526 (1317)
T KOG0612|consen 499 VEEKLSEEEAKKRKLEALVRQLEEELED 526 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444
No 409
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=25.06 E-value=83 Score=26.83 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhHHHHHHh
Q psy17239 12 ILGTLILIALTICWYVYR 29 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~ 29 (115)
+++..++++++||-|+..
T Consensus 342 lvl~~llG~~lg~~~vL~ 359 (377)
T PRK10381 342 VILAALIGGMLACGFVLL 359 (377)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444556778899988766
No 410
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=25.01 E-value=1.4e+02 Score=20.06 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=22.2
Q ss_pred HHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHH
Q psy17239 13 LGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGL 48 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~L 48 (115)
+..++++.+..+.|++.--|..+..-++...=+++|
T Consensus 2 l~~li~lv~~~~i~yf~~~rpqkk~~k~~~~m~~~L 37 (82)
T PF02699_consen 2 LSMLIPLVIIFVIFYFLMIRPQKKQQKEHQEMLASL 37 (82)
T ss_dssp -HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTGGG--
T ss_pred hHHHHHHHHHHHHHhhheecHHHHHHHHHHHHHHcC
Confidence 345556667777888998888876665544444444
No 411
>TIGR02596 Verrucomicrobium spinosum paralogous family TIGR02596. This model describes a nearly twenty member protein family unique to Verrucomicrobium spinosum. All members share a type IV pilin-like N-terminal leader sequence (TIGR02532). Sequences are from 207 to 248 in length. The function is unknown.
Probab=25.00 E-value=2.5e+02 Score=22.29 Aligned_cols=10 Identities=40% Similarity=0.458 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy17239 57 NLQKELERAR 66 (115)
Q Consensus 57 dLQ~~Le~A~ 66 (115)
.++..|..||
T Consensus 39 ~L~s~L~~AR 48 (195)
T TIGR02596 39 RLANELAAAA 48 (195)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 412
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=24.96 E-value=5e+02 Score=23.27 Aligned_cols=57 Identities=26% Similarity=0.424 Sum_probs=42.4
Q ss_pred HHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 26 YVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 26 fAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
|.=.+=+++=.=|++|-.=| .|-|..-..|=+-|++++++++.+...-++.|++|.+
T Consensus 13 yvdeEik~Al~GvKqMK~~M---ek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee 69 (436)
T PF01093_consen 13 YVDEEIKNALNGVKQMKTMM---EKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEE 69 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444443333 3678888899999999999999999999999999998
No 413
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.94 E-value=2.4e+02 Score=21.06 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17239 57 NLQKELERARQEQENAASEKIKLERRLQEHQAL 89 (115)
Q Consensus 57 dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~ 89 (115)
++=.+++..+..-..++..|+++|..|+++..+
T Consensus 10 ~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~a 42 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKA 42 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666677778888899999888875443
No 414
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=24.92 E-value=2.9e+02 Score=20.45 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 46 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 46 e~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
..+..+...+.+.++.+.+.+.+-..+..+...+.+...+
T Consensus 91 ~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 91 EELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778888888888888888888887777776666
No 415
>KOG2991|consensus
Probab=24.83 E-value=3.2e+02 Score=23.75 Aligned_cols=72 Identities=24% Similarity=0.254 Sum_probs=44.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh----hhcccccccc--cccccHHHHHHH
Q psy17239 41 MMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE----HQA----LQGDASDLKS--SSAFSDLEVCQL 110 (115)
Q Consensus 41 mmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~----~~~----~~~~~~~l~~--~~~~sdlEv~~L 110 (115)
+..|.+.|+.-|..|..- ++.|+..-......-.+-|++|.+ |.+ ++-..-.+++ .+|--.|++.||
T Consensus 106 l~d~i~nLk~se~~lkqQ---~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rl 182 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQ---QQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRL 182 (330)
T ss_pred hHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHH
Confidence 567889999888887653 344444434444555666777766 222 2222333444 567788999999
Q ss_pred HHhhC
Q psy17239 111 KQEIE 115 (115)
Q Consensus 111 kqEie 115 (115)
|-|++
T Consensus 183 K~ele 187 (330)
T KOG2991|consen 183 KGELE 187 (330)
T ss_pred HHHHH
Confidence 88864
No 416
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=24.73 E-value=3.3e+02 Score=21.07 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=30.8
Q ss_pred HHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 37 HLRRMMKDMEGLQ-RAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 37 hl~kmmkDle~Lq-~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
.++.+...+|.=. -.++.+.|+...|.+++..--.+...+..+++++.+
T Consensus 14 ~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~ 63 (219)
T TIGR02977 14 NLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSR 63 (219)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444322 345666677777777777777777777777777665
No 417
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=24.73 E-value=95 Score=27.50 Aligned_cols=27 Identities=11% Similarity=0.141 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHH
Q psy17239 11 YILGTLILIALTICWYVYRQKESSQQH 37 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~h 37 (115)
+..++-+++|+.-|||.++=+|.-|..
T Consensus 188 ~~~~lA~~~~I~~s~~~~r~ak~rQ~~ 214 (397)
T COG4597 188 IAFILALVMAIVASVFLARWAKTRQIA 214 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677899999999999988876643
No 418
>PRK09793 methyl-accepting protein IV; Provisional
Probab=24.69 E-value=4.5e+02 Score=22.61 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=11.1
Q ss_pred HHHHHHhHHHHHHhhhhhHHHHHHHH
Q psy17239 16 LILIALTICWYVYRQKESSQQHLRRM 41 (115)
Q Consensus 16 slvia~~GcWfAy~Qnk~Sk~hl~km 41 (115)
++++.++.++|++.+=+.....+..+
T Consensus 18 ~~ll~l~~~~~sl~~~~~~~~~~~~~ 43 (533)
T PRK09793 18 CGILQIGSNGMSFWAFRDDLQRLNQV 43 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445544444444444333
No 419
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=24.50 E-value=1.9e+02 Score=20.96 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHH
Q psy17239 11 YILGTLILIALTICWYVYRQKESSQQHLRRMM 42 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmm 42 (115)
+++++++++++.-.|--|+.|++-+.=++.+.
T Consensus 28 ~lll~~~~~~~~~~~r~~~~~~yrr~Al~~L~ 59 (146)
T PF14316_consen 28 ALLLLLLILLLWRLWRRWRRNRYRREALRELA 59 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 56777777888888888888877666555554
No 420
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.45 E-value=3.5e+02 Score=21.19 Aligned_cols=18 Identities=39% Similarity=0.698 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17239 54 DLANLQKELERARQEQEN 71 (115)
Q Consensus 54 sL~dLQ~~Le~A~~e~~~ 71 (115)
.+.|+|.+|+....|++.
T Consensus 20 ~l~elq~~l~~l~~ENk~ 37 (194)
T PF15619_consen 20 ELAELQRKLQELRKENKT 37 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 421
>PF02880 PGM_PMM_III: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; InterPro: IPR005846 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain III found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B 3UW2_A 2F7L_B 3I3W_B 2Z0F_A ....
Probab=24.43 E-value=1.1e+02 Score=20.89 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=23.6
Q ss_pred CCCCCchHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHH
Q psy17239 2 INSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRM 41 (115)
Q Consensus 2 ~~~~n~~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~km 41 (115)
++.+.+.||=++..+.++.+.. .++++...-++.+
T Consensus 75 ~~~~~~~~Dgi~a~~~~l~~l~-----~~~~~ls~ll~~l 109 (113)
T PF02880_consen 75 FPDFSYDKDGIYAALLLLELLA-----EEGKTLSELLDEL 109 (113)
T ss_dssp ETTTESSE-HHHHHHHHHHHHH-----HHTS-HHHHHHHH
T ss_pred ecCCCCCCcHHHHHHHHHHHHH-----HhCCCHHHHHHHH
Confidence 4566788999999999998877 5555555555443
No 422
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=24.42 E-value=51 Score=24.57 Aligned_cols=16 Identities=25% Similarity=0.773 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhHHHH
Q psy17239 11 YILGTLILIALTICWY 26 (115)
Q Consensus 11 ~~Lv~slvia~~GcWf 26 (115)
+++++.+|+++++|++
T Consensus 84 vi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 84 VICGVIAIVVLIVCFC 99 (179)
T ss_pred hhhHHHHHHHhHhhhe
Confidence 4444455566666665
No 423
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=24.41 E-value=78 Score=25.05 Aligned_cols=19 Identities=11% Similarity=0.343 Sum_probs=11.6
Q ss_pred HHHHHHHHHhHHHHHHhhh
Q psy17239 13 LGTLILIALTICWYVYRQK 31 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~Qn 31 (115)
++.+++-++|.||+.|.=-
T Consensus 8 ~iS~ifa~~G~~~llf~l~ 26 (161)
T PF13042_consen 8 MISFIFAVGGMIWLLFNLF 26 (161)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444455556699988653
No 424
>PF06699 PIG-F: GPI biosynthesis protein family Pig-F; InterPro: IPR009580 Glycosylphosphatidylinositol anchor biosynthesis protein Pig-F is involved in glycosylphosphatidylinositol (GPI) anchor biosynthesis [, , ]. ; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=24.17 E-value=94 Score=24.39 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHhHHHHH
Q psy17239 8 VKDYILGTLILIALTICWYV 27 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcWfA 27 (115)
..|..+....+++++|||+.
T Consensus 134 ~~~~~~~~~~~g~~~GaWlG 153 (190)
T PF06699_consen 134 IFENSLLYPAIGAVLGAWLG 153 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 45666778899999999984
No 425
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=24.14 E-value=88 Score=21.98 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=14.2
Q ss_pred CCCCCchHHHHHHHHHHHHHh
Q psy17239 2 INSTSHVKDYILGTLILIALT 22 (115)
Q Consensus 2 ~~~~n~~KD~~Lv~slvia~~ 22 (115)
+++-+.||=+++++.+++|+.
T Consensus 1 mN~yp~WKyllil~vl~~~~l 21 (101)
T PF13721_consen 1 MNRYPLWKYLLILVVLLLGAL 21 (101)
T ss_pred CCCcchHHHHHHHHHHHHHHH
Confidence 456678999887776555443
No 426
>TIGR03177 pilus_cpaB Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.
Probab=24.08 E-value=62 Score=25.57 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=11.9
Q ss_pred HHHHHHHHHhHHHHHHh
Q psy17239 13 LGTLILIALTICWYVYR 29 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~ 29 (115)
|++++++|+++.|++|.
T Consensus 2 l~~al~~g~~a~~~~~~ 18 (261)
T TIGR03177 2 LAIALVAGGLAALLARR 18 (261)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 55777788777777553
No 427
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=23.90 E-value=86 Score=21.76 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred HhHHHHHH
Q psy17239 21 LTICWYVY 28 (115)
Q Consensus 21 ~~GcWfAy 28 (115)
+.||.-++
T Consensus 61 ~~G~~~~~ 68 (221)
T PF00335_consen 61 FLGCIGAC 68 (221)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 33443333
No 428
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=23.81 E-value=1.4e+02 Score=21.17 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhhh
Q psy17239 11 YILGTLILIALTICWYVYRQKE 32 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk 32 (115)
++=.+++++.+++++++.++.|
T Consensus 32 ~~~~~~~~~~~~~i~~~i~~~R 53 (163)
T PF13858_consen 32 WLGILSMVITIIFIYFAIRRYR 53 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666666655
No 429
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=23.79 E-value=81 Score=26.50 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhHHHHHHhh
Q psy17239 11 YILGTLILIALTICWYVYRQ 30 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Q 30 (115)
+++++.++.++.|++|+|.-
T Consensus 33 ~Ii~~~~~~~~lg~~Ya~~a 52 (325)
T PRK15471 33 TIIISVIVAIALAVGYLAVA 52 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 56677777778888887753
No 430
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=23.65 E-value=1.9e+02 Score=27.82 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=30.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 43 KDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQ 84 (115)
Q Consensus 43 kDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~ 84 (115)
.++|+ +--.-|.|+-++|..|+.||-.+++=-..+|++..
T Consensus 581 sevEs--rl~E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~ 620 (739)
T PF07111_consen 581 SEVES--RLREQLSEMEKRLNEARREHTKAVVSLRQIQRQAA 620 (739)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35554 23356889999999999999999988888887654
No 431
>TIGR02223 ftsN cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by Pfam model pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis.
Probab=23.56 E-value=29 Score=29.01 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=9.8
Q ss_pred HHHH-HHHHHHHh---HHHHHHh
Q psy17239 11 YILG-TLILIALT---ICWYVYR 29 (115)
Q Consensus 11 ~~Lv-~slvia~~---GcWfAy~ 29 (115)
++|+ +++|+++| |.||.-.
T Consensus 28 ~~la~a~~vl~~g~~~gl~~~~~ 50 (298)
T TIGR02223 28 VLIAAILILLFIGGSSGLYLLTE 50 (298)
T ss_pred HHHHHHHHHHHhhccceeEEeec
Confidence 4444 44455666 6666444
No 432
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=23.55 E-value=94 Score=18.92 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHhHH
Q psy17239 8 VKDYILGTLILIALTIC 24 (115)
Q Consensus 8 ~KD~~Lv~slvia~~Gc 24 (115)
++|.+++++++.|++..
T Consensus 44 ~~~p~~~iL~~~a~is~ 60 (64)
T smart00831 44 FHNPLIYILLAAAVLSA 60 (64)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 46888877777776543
No 433
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=23.54 E-value=3.4e+02 Score=23.33 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhcccccccc----cccccHHHHHHHHHhh
Q psy17239 47 GLQRAELDLANLQKELERAR----QEQENAASEKIKLERRLQEHQALQGDASDLKS----SSAFSDLEVCQLKQEI 114 (115)
Q Consensus 47 ~Lq~AE~sL~dLQ~~Le~A~----~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~----~~~~sdlEv~~LkqEi 114 (115)
|..+..++|.+||.-|-.=+ -|-..|-.|.+.+=... +..|+.|+. ...-+|-+|..|++||
T Consensus 183 S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aR------qkkAeeLkrltd~A~~MsE~Ql~ELRadI 252 (302)
T PF07139_consen 183 SIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDAR------QKKAEELKRLTDRASQMSEEQLAELRADI 252 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 67788889999988775432 23344444444332111 222333332 4466778999999987
No 434
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=23.53 E-value=29 Score=24.38 Aligned_cols=7 Identities=29% Similarity=1.398 Sum_probs=3.6
Q ss_pred HHHHHHh
Q psy17239 23 ICWYVYR 29 (115)
Q Consensus 23 GcWfAy~ 29 (115)
.|||.+.
T Consensus 86 l~w~f~~ 92 (96)
T PTZ00382 86 LCWWFVC 92 (96)
T ss_pred HhheeEE
Confidence 4565443
No 435
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=23.44 E-value=2.6e+02 Score=19.35 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17239 49 QRAELDLANLQKELER 64 (115)
Q Consensus 49 q~AE~sL~dLQ~~Le~ 64 (115)
..|+..+.++.+.-++
T Consensus 45 ~~A~~~~~~l~~~W~k 60 (121)
T PF14276_consen 45 EKAYKETEELEKEWDK 60 (121)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555555544433
No 436
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=23.42 E-value=91 Score=20.86 Aligned_cols=14 Identities=14% Similarity=0.054 Sum_probs=5.3
Q ss_pred HHHHHHhHHHHHHh
Q psy17239 16 LILIALTICWYVYR 29 (115)
Q Consensus 16 slvia~~GcWfAy~ 29 (115)
.+++.++++|+...
T Consensus 46 ~~~~~~~~~~~~~~ 59 (176)
T PF13567_consen 46 LLVLLLGGLGFHAY 59 (176)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 437
>PF13400 Tad: Putative Flp pilus-assembly TadE/G-like
Probab=23.37 E-value=1.7e+02 Score=17.34 Aligned_cols=26 Identities=15% Similarity=-0.051 Sum_probs=12.9
Q ss_pred HHHHHHHHHhHHHHHHhhhhhHHHHH
Q psy17239 13 LGTLILIALTICWYVYRQKESSQQHL 38 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~Qnk~Sk~hl 38 (115)
++++.+++++|+.+-+-+-...|..+
T Consensus 9 ~~~~~~l~~~~~~id~~~~~~~r~~l 34 (48)
T PF13400_consen 9 LVLVPLLLLIGLAIDVGRAYLARTRL 34 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555544443
No 438
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=23.36 E-value=1.5e+02 Score=28.61 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhhHHHHH------HHHHHHHHHHHHHHHHH
Q psy17239 33 SSQQHLRRMMKDMEGLQR------AELDLANLQKELERARQ 67 (115)
Q Consensus 33 ~Sk~hl~kmmkDle~Lq~------AE~sL~dLQ~~Le~A~~ 67 (115)
-+++.+.+||..|+.|-+ |++.|.+||..||.-|.
T Consensus 565 l~~~dLq~Mmd~ieela~~G~~~~A~qlL~qlq~mmenlq~ 605 (851)
T TIGR02302 565 LRQQDLQNMMDQIENLARSGDRDQAKQLLSQLQQMMNNLQM 605 (851)
T ss_pred cCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999964 89999999999998774
No 439
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.27 E-value=1.2e+02 Score=27.08 Aligned_cols=13 Identities=8% Similarity=0.133 Sum_probs=5.8
Q ss_pred hhhhhHHHHHHHHH
Q psy17239 29 RQKESSQQHLRRMM 42 (115)
Q Consensus 29 ~Qnk~Sk~hl~kmm 42 (115)
.|+|+. ..|.++-
T Consensus 19 ~rk~~~-k~i~~Le 31 (560)
T PF06160_consen 19 YRKRYY-KEIDELE 31 (560)
T ss_pred HHHHHH-HHHHHHH
Confidence 344443 3355543
No 440
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.27 E-value=4.8e+02 Score=24.47 Aligned_cols=15 Identities=40% Similarity=0.403 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHHH
Q psy17239 44 DMEGLQRAELDLANL 58 (115)
Q Consensus 44 Dle~Lq~AE~sL~dL 58 (115)
|...++.+|.-|.+.
T Consensus 486 DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 486 DKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 441
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=23.26 E-value=6.2e+02 Score=23.64 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy17239 11 YILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASE-KIKLERRLQE 85 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~E-K~~LE~kl~~ 85 (115)
++|++++++-+.|.-+||.-|+.-...+..... .+...+.|+..=+...-.+-+.+..+ -..++.++.+
T Consensus 144 ~~L~~~~~~il~g~i~aF~~n~~l~~~v~~~~~------~~~~~~~Dl~~~l~~~~~qi~~l~~~ny~~~~~~v~~ 213 (806)
T PF05478_consen 144 ILLLLLTLIILFGVICAFVANQQLSTGVDDTPN------TVNSTLDDLRTFLNDTPQQIDHLLVQNYSELKDHVSS 213 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777888888766666655433 56778888888888888888877777 5555544443
No 442
>TIGR02595 PEP_exosort PEP-CTERM putative exosortase interaction domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms.
Probab=23.18 E-value=97 Score=17.04 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=6.2
Q ss_pred HHHHHhHHHHHHhhh
Q psy17239 17 ILIALTICWYVYRQK 31 (115)
Q Consensus 17 lvia~~GcWfAy~Qn 31 (115)
+++++++.++..+.+
T Consensus 8 ~ll~~g~~~~~~rrr 22 (26)
T TIGR02595 8 LLLLLGLGFLLLRRR 22 (26)
T ss_pred HHHHHHHHHHHHhhc
Confidence 334444444444433
No 443
>PF13617 Lipoprotein_19: YnbE-like lipoprotein
Probab=23.11 E-value=45 Score=22.12 Aligned_cols=14 Identities=36% Similarity=0.482 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhHH
Q psy17239 11 YILGTLILIALTIC 24 (115)
Q Consensus 11 ~~Lv~slvia~~Gc 24 (115)
++++++++.+++||
T Consensus 3 l~~~~~~~~~l~gC 16 (59)
T PF13617_consen 3 LLLLLALALALTGC 16 (59)
T ss_pred hHHHHHHHHHHccC
Confidence 56777888888898
No 444
>PRK13684 Ycf48-like protein; Provisional
Probab=23.06 E-value=47 Score=27.15 Aligned_cols=19 Identities=26% Similarity=0.453 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHhHHH
Q psy17239 7 HVKDYILGTLILIALTICW 25 (115)
Q Consensus 7 ~~KD~~Lv~slvia~~GcW 25 (115)
.+|.++|++++++.+.||=
T Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (334)
T PRK13684 7 SLKNLLLLLALLLVLSGCS 25 (334)
T ss_pred HHHHHHHHHHHHhhccccC
Confidence 4789999999999999994
No 445
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.03 E-value=3.3e+02 Score=24.41 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 45 MEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 45 le~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
.+.+..++..+.+++.+++...++......+...+++++++
T Consensus 208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~ 248 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLES 248 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 446
>PF09583 Phageshock_PspG: Phage shock protein G (Phageshock_PspG); InterPro: IPR014318 This protein previously was designated yjbO in Escherichia coli. It is found only in genomes that have the phage shock operon (psp), but it is only rarely encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins and heat shock.
Probab=23.01 E-value=62 Score=22.15 Aligned_cols=11 Identities=18% Similarity=0.936 Sum_probs=8.1
Q ss_pred HHHHHhHHHHH
Q psy17239 17 ILIALTICWYV 27 (115)
Q Consensus 17 lvia~~GcWfA 27 (115)
++.++.||||+
T Consensus 51 Lil~~~~vW~~ 61 (65)
T PF09583_consen 51 LILAAVVVWFY 61 (65)
T ss_pred HHHHHHHHHHh
Confidence 45677889985
No 447
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=22.97 E-value=5.4e+02 Score=22.82 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHHHHhhHHHHHH
Q psy17239 30 QKESSQQHLRRMMKDMEGLQRA 51 (115)
Q Consensus 30 Qnk~Sk~hl~kmmkDle~Lq~A 51 (115)
+-..+...+.++..-++.+.+.
T Consensus 79 ~l~~~~~~l~~~~~~l~~~~~~ 100 (779)
T PRK11091 79 QLEESRQRLSRLVAKLEEMRER 100 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444545666666666655443
No 448
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=22.96 E-value=56 Score=26.60 Aligned_cols=18 Identities=33% Similarity=0.480 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHhHHH
Q psy17239 8 VKDYILGTLILIALTICW 25 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcW 25 (115)
||.+++.+..++.+.||=
T Consensus 1 mk~l~~~l~~~l~LsgCa 18 (215)
T PF05643_consen 1 MKKLILGLAAALLLSGCA 18 (215)
T ss_pred ChhHHHHHHHHHHHhhcc
Confidence 688999999999999994
No 449
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=22.94 E-value=2.8e+02 Score=19.82 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17239 49 QRAELDLANLQKELERARQEQ 69 (115)
Q Consensus 49 q~AE~sL~dLQ~~Le~A~~e~ 69 (115)
..+...+..++.-++..+.++
T Consensus 36 ~~~~~~l~~i~~al~~y~~d~ 56 (134)
T TIGR01710 36 QVAKAQIKALKNALDMYRLDN 56 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555444443
No 450
>PLN02715 lipid phosphate phosphatase
Probab=22.94 E-value=1.2e+02 Score=25.90 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=19.2
Q ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHhhh
Q psy17239 3 NSTSHVKDYILGTLILIALTICWYVYRQK 31 (115)
Q Consensus 3 ~~~n~~KD~~Lv~slvia~~GcWfAy~Qn 31 (115)
|..+|+-|++... ++|++-.||.|+|.
T Consensus 242 Dy~Hh~sDVlaG~--lLG~~~a~~~y~~~ 268 (327)
T PLN02715 242 DYWHHWQDVFAGA--LIGILVAAFCYRQF 268 (327)
T ss_pred cCCCCHHHHHHHH--HHHHHHHHHHHHHH
Confidence 5678999986553 45566667888876
No 451
>PRK10574 putative major pilin subunit; Provisional
Probab=22.90 E-value=3.3e+02 Score=20.37 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=4.6
Q ss_pred HHHHHHHHHhh
Q psy17239 35 QQHLRRMMKDM 45 (115)
Q Consensus 35 k~hl~kmmkDl 45 (115)
+.++...+.++
T Consensus 36 ~a~~~~~~~~~ 46 (146)
T PRK10574 36 KAALTDMLQTF 46 (146)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 452
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=22.88 E-value=3.7e+02 Score=24.59 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 54 DLANLQKELERARQEQENAASEKIKLERRL 83 (115)
Q Consensus 54 sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl 83 (115)
.+..+-+.+-+|+++...+...-++|..++
T Consensus 124 ~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl 153 (499)
T COG4372 124 ELAAARQNLAKAQQELARLTKQAQDLQTRL 153 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555444
No 453
>TIGR02554 PrgH type III secretion system protein PrgH/EprH. In Samonella, this gene is part of a four-gene operon PrgHIJK and in general is found in type III secretion operons. PrgH has been shown to be required for secretion, as well as being a structural component of the needle complex.
Probab=22.79 E-value=1.2e+02 Score=26.64 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHH
Q psy17239 11 YILGTLILIALTICWYVYRQKESSQQHLRRMMK 43 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmk 43 (115)
.+++.++|+|++-.-|+|.+|. +.+|++.+-.
T Consensus 141 ~~~~~l~~~~i~~~~~~~~~n~-~~~~v~~L~~ 172 (389)
T TIGR02554 141 LALGALLVAGVALAGLAWWQNS-GQRQLAELNG 172 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhhcc-hhHHHHHHHH
Confidence 5666666666544446777765 5557777654
No 454
>COG3583 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.78 E-value=89 Score=26.98 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=22.7
Q ss_pred CCCchHHHHHHHHHHHHHhHHHHHHh
Q psy17239 4 STSHVKDYILGTLILIALTICWYVYR 29 (115)
Q Consensus 4 ~~n~~KD~~Lv~slvia~~GcWfAy~ 29 (115)
..+.+|=++|++.+++++.+|-|+|.
T Consensus 8 ~~s~s~~~~l~~g~~l~v~~~a~~~~ 33 (309)
T COG3583 8 NSSKSKMLRLAAGLLLVVLLIAGGVA 33 (309)
T ss_pred cccccchHHHHHHHHHHHHHHHhHHH
Confidence 35678889999999999999999986
No 455
>PRK11372 lysozyme inhibitor; Provisional
Probab=22.62 E-value=79 Score=22.71 Aligned_cols=17 Identities=24% Similarity=0.338 Sum_probs=11.7
Q ss_pred chHHHHHHHHHHHHHhHH
Q psy17239 7 HVKDYILGTLILIALTIC 24 (115)
Q Consensus 7 ~~KD~~Lv~slvia~~Gc 24 (115)
|||=++ ++++++.++||
T Consensus 2 ~mk~ll-~~~~~~lL~gC 18 (109)
T PRK11372 2 SMKKLL-IICLPVLLTGC 18 (109)
T ss_pred chHHHH-HHHHHHHHHHh
Confidence 567644 56666668999
No 456
>PRK14623 hypothetical protein; Provisional
Probab=22.57 E-value=1.4e+02 Score=21.63 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=10.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy17239 38 LRRMMKDMEGLQRAELDLANLQKELE 63 (115)
Q Consensus 38 l~kmmkDle~Lq~AE~sL~dLQ~~Le 63 (115)
+..||+. .|++.+.+..+|++|.
T Consensus 3 ~~~~mkq---aqkmQ~km~~~Qeel~ 25 (106)
T PRK14623 3 MMGMMGK---LKEAQQKVEATKKRLD 25 (106)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHh
Confidence 4455554 3344344444444443
No 457
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=22.43 E-value=2.9e+02 Score=19.47 Aligned_cols=18 Identities=11% Similarity=-0.009 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhHHHHHH
Q psy17239 11 YILGTLILIALTICWYVY 28 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy 28 (115)
++|++.+.--..|++|+=
T Consensus 4 w~l~Lc~~SF~~G~lft~ 21 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLFTN 21 (95)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 456666666677777775
No 458
>PRK08377 NADH dehydrogenase subunit N; Validated
Probab=22.24 E-value=1.7e+02 Score=25.43 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhh
Q psy17239 9 KDYILGTLILIALTICWYVYRQKE 32 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWfAy~Qnk 32 (115)
..+++++.++..+.|++.|..|+.
T Consensus 273 ~~~l~~l~~ls~l~g~~~al~Q~d 296 (494)
T PRK08377 273 LKLVIIMATLTVFFAELSALRQKN 296 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888999999999974
No 459
>KOG3684|consensus
Probab=22.22 E-value=6.2e+02 Score=23.30 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=40.2
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy17239 29 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASD 95 (115)
Q Consensus 29 ~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~ 95 (115)
+|=|+-|-..+++|.+..+|-.+-....++-..+++-..-|+.-...-.+||.||+++.+.=...|.
T Consensus 403 ~~fR~Vk~~qRkl~e~~nsl~d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l~s~~~ 469 (489)
T KOG3684|consen 403 HQFRSVKWEQRKLSEQANSLVDLAKTQNDMYDLLQELHSRQEELEKQIDTLESKLEALTASLSSLPG 469 (489)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 3444555566667766666655555555554555555555555566677899999986663333333
No 460
>PLN02250 lipid phosphate phosphatase
Probab=22.20 E-value=1.2e+02 Score=25.60 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=18.3
Q ss_pred CCCCCchHHHHHHHHHHHHHhHHHHHHhhhhh
Q psy17239 2 INSTSHVKDYILGTLILIALTICWYVYRQKES 33 (115)
Q Consensus 2 ~~~~n~~KD~~Lv~slvia~~GcWfAy~Qnk~ 33 (115)
.|..+|+-|++... ++|++-.+|.|+|.=.
T Consensus 217 ~dy~Hh~sDVlaG~--lIG~~~A~~~y~~~fp 246 (314)
T PLN02250 217 DDYWHHWQDVFAGA--LIGLTVASFCYLQFFP 246 (314)
T ss_pred hcCCcCHHHHHHHH--HHHHHHHHHHHHHHcC
Confidence 35678999986544 3444455666766433
No 461
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=22.13 E-value=96 Score=25.19 Aligned_cols=20 Identities=25% Similarity=0.614 Sum_probs=13.0
Q ss_pred CCchHHHHHHHHHHHHHhHH
Q psy17239 5 TSHVKDYILGTLILIALTIC 24 (115)
Q Consensus 5 ~n~~KD~~Lv~slvia~~Gc 24 (115)
++.+.++++.+++|+|+++|
T Consensus 106 ~~~~~~~l~~~~~~~~v~a~ 125 (224)
T PF03839_consen 106 PSPLMQYLIGALLLVGVIAI 125 (224)
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 56688888866666555543
No 462
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=22.12 E-value=1e+02 Score=21.24 Aligned_cols=22 Identities=18% Similarity=-0.037 Sum_probs=17.4
Q ss_pred CCCchHHHHHHHHHHHHHhHHH
Q psy17239 4 STSHVKDYILGTLILIALTICW 25 (115)
Q Consensus 4 ~~n~~KD~~Lv~slvia~~GcW 25 (115)
++..|-+|-++.+|++|+.+|-
T Consensus 29 sp~qW~aIGvi~gi~~~~lt~l 50 (68)
T PF04971_consen 29 SPSQWAAIGVIGGIFFGLLTYL 50 (68)
T ss_pred CcccchhHHHHHHHHHHHHHHH
Confidence 4567888889999998888773
No 463
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=22.09 E-value=1.7e+02 Score=28.42 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHhhh---hhHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQK---ESSQQHLRRMMKD--MEGLQRAELDLANLQKELERA 65 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qn---k~Sk~hl~kmmkD--le~Lq~AE~sL~dLQ~~Le~A 65 (115)
++++.+++++.++|+.+++- |..+.....+-++ .+.-..++..+..|+.++..|
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a 93 (1169)
T TIGR03348 35 LLIIAVLLLVWLLWLLIRQWRARRRNQQLLAALAAPTKLKADAAAEAEIRELRARFNEA 93 (1169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccchHHHHHHHHHHHHH
No 464
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=21.99 E-value=94 Score=25.63 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhH
Q psy17239 11 YILGTLILIALTICWYVYRQKESS 34 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~S 34 (115)
+-|.+..||+++|.-++|.++|..
T Consensus 236 iALG~v~ll~l~Gii~~~~~r~~~ 259 (281)
T PF12768_consen 236 IALGTVFLLVLIGIILAYIRRRRQ 259 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456778889999999999999844
No 465
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=21.95 E-value=3.4e+02 Score=20.19 Aligned_cols=16 Identities=50% Similarity=0.586 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17239 51 AELDLANLQKELERAR 66 (115)
Q Consensus 51 AE~sL~dLQ~~Le~A~ 66 (115)
|+..+.+..++|+.|+
T Consensus 56 a~~~~~~~~~~l~~Ar 71 (161)
T COG0711 56 AQALLAEYEQELEEAR 71 (161)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555566666666
No 466
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=21.90 E-value=2.4e+02 Score=23.49 Aligned_cols=37 Identities=32% Similarity=0.439 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 49 QRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 49 q~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
...+..+..+.++-+.+.++-+....|...|++++.+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555554
No 467
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=21.89 E-value=4.6e+02 Score=21.60 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 53 LDLANLQKELERARQEQENAASEKIKLE 80 (115)
Q Consensus 53 ~sL~dLQ~~Le~A~~e~~~v~~EK~~LE 80 (115)
..+.+|+.++..|++...+...|-.+|.
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~ 116 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELM 116 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666555555444444433
No 468
>TIGR01709 typeII_sec_gspL general secretion pathway protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=21.88 E-value=2.3e+02 Score=23.42 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhHHHHHHhhhh
Q psy17239 12 ILGTLILIALTICWYVYRQKE 32 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk 32 (115)
++++++++.++|.|+.+.|=+
T Consensus 241 ~a~~~lvl~l~~~~~~~~~l~ 261 (384)
T TIGR01709 241 AAAVLLVLSLVGAGLQAWQVA 261 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677666665533
No 469
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=21.86 E-value=1.2e+02 Score=21.53 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q psy17239 9 KDYILGTLILIALTICWYVY 28 (115)
Q Consensus 9 KD~~Lv~slvia~~GcWfAy 28 (115)
-|.++|..+.++++|+++.+
T Consensus 12 ~~~l~vl~~y~~l~~~YLlV 31 (81)
T PF10716_consen 12 SDTLLVLLAYAALAGLYLLV 31 (81)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 46778888888888887543
No 470
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=21.84 E-value=4.2e+02 Score=21.22 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 31 KESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 31 nk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+.+.-.++..++.-+|.|..--..|.-.|+.+.+.+.... .-.+|..+|-..|.
T Consensus 202 ~~~le~~l~~l~~~id~l~~e~~~~~~y~r~~~~~~~~~~-~~~~kr~~en~~r~ 255 (266)
T cd08065 202 NSFLEKNLELLMESVDELSQEQGKFNYYQRNLARQQAQIQ-QWLQKRKAENAQRE 255 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHH
Confidence 4556778899999999999988899999998866655544 44567777766665
No 471
>PF14341 PilX_N: PilX N-terminal
Probab=21.81 E-value=2.1e+02 Score=17.63 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLR 39 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~ 39 (115)
+|+++.++|++++=-+-.|.|.+..+..
T Consensus 11 ~l~vltll~~~~~~~s~~~~~~a~n~~~ 38 (51)
T PF14341_consen 11 ILLVLTLLGVAAMRSSTLEERMAGNQRD 38 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444555566666566666666655443
No 472
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.81 E-value=94 Score=24.95 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=8.9
Q ss_pred HHHHHHHH-hHHHHHHhhhh
Q psy17239 14 GTLILIAL-TICWYVYRQKE 32 (115)
Q Consensus 14 v~slvia~-~GcWfAy~Qnk 32 (115)
++++++|+ +..|++-.++.
T Consensus 9 ~ILll~a~~~~~w~~~~~~~ 28 (188)
T COG3117 9 LILLLAALALSGWLLGLEQD 28 (188)
T ss_pred HHHHHHHHHHHHHhhhcccc
Confidence 44444444 44555554443
No 473
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=21.79 E-value=2e+02 Score=18.77 Aligned_cols=19 Identities=11% Similarity=-0.110 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhHHHHHHh
Q psy17239 11 YILGTLILIALTICWYVYR 29 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~ 29 (115)
++++..+++.++|+-+++.
T Consensus 61 il~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 61 ILALGLFLGLILGIGLAFL 79 (82)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555666666664
No 474
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=21.75 E-value=2.4e+02 Score=25.12 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHh
Q psy17239 8 VKDYILGTLILIALTICWYVYR 29 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcWfAy~ 29 (115)
+|-.+||++.++++.+.-|...
T Consensus 2 ~~k~~li~~~ll~~~~~~~~~~ 23 (383)
T PF12097_consen 2 FKKTCLILSFLLAISILAFFED 23 (383)
T ss_pred cccchhhHHHHHHHHHHHhccc
Confidence 3456778888888888877763
No 475
>KOG0161|consensus
Probab=21.73 E-value=3e+02 Score=29.23 Aligned_cols=40 Identities=28% Similarity=0.447 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 46 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 46 e~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
|.-++|.....-+..+|...|+........|++||+..++
T Consensus 1744 Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kd 1783 (1930)
T KOG0161|consen 1744 ERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKD 1783 (1930)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888889999999999999999999999988777
No 476
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.61 E-value=2.5e+02 Score=18.53 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17239 49 QRAELDLANLQKELERARQEQ 69 (115)
Q Consensus 49 q~AE~sL~dLQ~~Le~A~~e~ 69 (115)
+.+...+..++..++.++..+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~ 64 (149)
T COG2165 44 EAAQQALRVIRLALEEYRLDG 64 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 334444444444444444443
No 477
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.59 E-value=1.9e+02 Score=25.62 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQH 37 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~h 37 (115)
++++++|++++++||.-+.+.+-=..
T Consensus 8 ~i~ii~i~~~~~~~~~rr~~~~~i~~ 33 (569)
T PRK04778 8 AIVVIIIIAYLAGLILRKRNYKRIDE 33 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444554455544444443333
No 478
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=21.42 E-value=1.2e+02 Score=20.16 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=6.0
Q ss_pred HHHhHHHHHHhh
Q psy17239 19 IALTICWYVYRQ 30 (115)
Q Consensus 19 ia~~GcWfAy~Q 30 (115)
.+++++||.++.
T Consensus 16 a~~~a~~~~~r~ 27 (73)
T PF06522_consen 16 AVGGATFYLYRL 27 (73)
T ss_pred HHHHHHHHHHHH
Confidence 333444666653
No 479
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.30 E-value=3.5e+02 Score=20.04 Aligned_cols=7 Identities=43% Similarity=0.733 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy17239 55 LANLQKE 61 (115)
Q Consensus 55 L~dLQ~~ 61 (115)
+..||++
T Consensus 37 I~sL~~K 43 (143)
T PF12718_consen 37 ITSLQKK 43 (143)
T ss_pred HHHHHHH
Confidence 3333333
No 480
>KOG0483|consensus
Probab=21.28 E-value=2.5e+02 Score=22.44 Aligned_cols=55 Identities=24% Similarity=0.421 Sum_probs=34.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 23 ICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRL 83 (115)
Q Consensus 23 GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl 83 (115)
-.|| |||.++-..+++-+|=+.|++.=.+|..-..+|++ +...-..++.++...+
T Consensus 95 avWF---QNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~---e~~eL~~~~~~~~~~~ 149 (198)
T KOG0483|consen 95 AVWF---QNRRARWKTKQLEKDYESLKRQLESLRSENDRLQS---EVQELVAELSSLKREM 149 (198)
T ss_pred HHHH---hhccccccchhhhhhHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHhhhhhhh
Confidence 4687 99999999999999999888765555443333333 3333334444444333
No 481
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=21.27 E-value=96 Score=24.03 Aligned_cols=16 Identities=31% Similarity=0.382 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhHHHH
Q psy17239 11 YILGTLILIALTICWY 26 (115)
Q Consensus 11 ~~Lv~slvia~~GcWf 26 (115)
.+|+++++|+++||-|
T Consensus 105 ~il~il~~i~is~~~~ 120 (139)
T PHA03099 105 GIVLVLVGIIITCCLL 120 (139)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3477777888888754
No 482
>PRK01294 lipase chaperone; Provisional
Probab=21.24 E-value=84 Score=26.56 Aligned_cols=7 Identities=29% Similarity=0.833 Sum_probs=2.6
Q ss_pred HHhHHHH
Q psy17239 20 ALTICWY 26 (115)
Q Consensus 20 a~~GcWf 26 (115)
+++|.||
T Consensus 16 ~~~~~~~ 22 (336)
T PRK01294 16 AIGAVWL 22 (336)
T ss_pred HHHHHHH
Confidence 3333333
No 483
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=21.23 E-value=60 Score=17.49 Aligned_cols=9 Identities=56% Similarity=0.696 Sum_probs=0.0
Q ss_pred HHHHHHHHH
Q psy17239 11 YILGTLILI 19 (115)
Q Consensus 11 ~~Lv~slvi 19 (115)
++|+++++|
T Consensus 6 IIlvvLLli 14 (19)
T PF13956_consen 6 IILVVLLLI 14 (19)
T ss_pred HHHHHHHhc
No 484
>PF07811 TadE: TadE-like protein; InterPro: IPR012495 The members of this family are similar to a region of the protein product of the bacterial tadE locus (Q9S4A6 from SWISSPROT). In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces []. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria []. All tad loci but TadA have putative transmembrane regions [], and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.
Probab=21.23 E-value=1.6e+02 Score=16.65 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHhhhh
Q psy17239 12 ILGTLILIALTICWYVYRQKE 32 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk 32 (115)
++++.+++.+-.|++.|.++.
T Consensus 13 vl~~~~~~~~~~~~~~~~~~~ 33 (43)
T PF07811_consen 13 VLLLLLFGIVELGRMFYAQQV 33 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 485
>COG5304 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.21 E-value=1.7e+02 Score=21.34 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccHHH
Q psy17239 35 QQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLE 106 (115)
Q Consensus 35 k~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~~~~~sdlE 106 (115)
|..++.|.+|++++-.-+.+=.+++.+|..--+++-....-+.-|-++-+= .-|++. +|||
T Consensus 4 ke~~~nM~k~lpk~~~d~Eae~~l~Qdi~D~~~~~~fqk~afe~lkkd~ri-------niRlss----~dLe 64 (92)
T COG5304 4 KENISNMIKDLPKNALDEEAENDLWQDIKDFEQEKHFQKAAFEYLKKDTRI-------NIRLSS----SDLE 64 (92)
T ss_pred hHHHHhhhhccchhccchhhHHHHHHhhHHHHHHHHHHHHHHHHhccccee-------eEecCH----HHHH
No 486
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.14 E-value=4.1e+02 Score=20.80 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh-hhcccccccccccccHHHHHHHH
Q psy17239 39 RRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKL-ERRLQEHQA-LQGDASDLKSSSAFSDLEVCQLK 111 (115)
Q Consensus 39 ~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~L-E~kl~~~~~-~~~~~~~l~~~~~~sdlEv~~Lk 111 (115)
.++|..+..+.....++.+.|+...+.+..+.....-+... -..+.+... |+.++|..=. .+.++|-.||.
T Consensus 103 ~~~l~~~q~l~~~~k~~~e~~k~~~Kl~kk~~k~~~~~~~~~~~~l~~~~~~We~~~~~~~e--~fQ~leeeRl~ 175 (228)
T cd07650 103 MNTLDDDQNLSNLAKELDESQKKWDKLKKKHSKASSKAVSAAVSDLEEARQQWDSQAPFLFE--LLQAIDEERLN 175 (228)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHH
No 487
>COG3300 MHYT domain (predicted integral membrane sensor domain) [Signal transduction mechanisms]
Probab=21.14 E-value=98 Score=25.73 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHH
Q psy17239 11 YILGTLILIALTICWYVY 28 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy 28 (115)
++..+|+++|+.|.||++
T Consensus 78 ~~T~lSl~iAv~~s~~al 95 (236)
T COG3300 78 FLTGLSLLIAVAGSAAAL 95 (236)
T ss_pred HHHHHHHHHHHHHHHHHH
No 488
>PF02831 gpW: gpW; InterPro: IPR004174 GpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking GpW contain DNA-filled heads, and active tails, but no infectious virions. GpW is required for the addition of GpFII to the head, which is, in turn, required for the attachment of tails. Since GpFII and tails are known to be attached at the connector, GpW is also likely to assemble at this site. The addition of GpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that GpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in GpW (its calculated pI is 10.8) is consistent with a role in DNA interaction [].; GO: 0019067 viral assembly, maturation, egress, and release; PDB: 2L6Q_A 2L6R_A 1HYW_A.
Probab=21.12 E-value=96 Score=20.91 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHH
Q psy17239 42 MKDMEGLQRAELDLANLQ 59 (115)
Q Consensus 42 mkDle~Lq~AE~sL~dLQ 59 (115)
|.+-+.|..|+.++++|+
T Consensus 1 Mt~~~~L~~a~~A~h~L~ 18 (68)
T PF02831_consen 1 MTTQEQLAEARAAYHDLL 18 (68)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHH
No 489
>PHA02562 46 endonuclease subunit; Provisional
Probab=21.11 E-value=5.2e+02 Score=21.97 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy17239 30 QKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASD 95 (115)
Q Consensus 30 Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~ 95 (115)
+.+....+=+++-.--+.+.........++.+++..+........+...|+.++.+......+.+.
T Consensus 335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~k 400 (562)
T PHA02562 335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF10931 DUF2735: Protein of unknown function (DUF2735); InterPro: IPR021232 Some members in this family of proteins are annotated as glutamine synthetase translation inhibitor however this function can not be confirmed.
Probab=21.10 E-value=23 Score=22.86 Aligned_cols=7 Identities=43% Similarity=0.833 Sum_probs=0.0
Q ss_pred HHhHHHH
Q psy17239 20 ALTICWY 26 (115)
Q Consensus 20 a~~GcWf 26 (115)
+++||||
T Consensus 35 ~~~~sWY 41 (51)
T PF10931_consen 35 ADSGSWY 41 (51)
T ss_pred ecCccch
No 491
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=21.09 E-value=1.2e+02 Score=21.88 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHH
Q psy17239 11 YILGTLILIALTICWYVYRQKESSQQ 36 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~Sk~ 36 (115)
.+|+++|+|.++..-++|+=.|+.+.
T Consensus 5 ~il~llLll~l~asl~~wr~~~rq~k 30 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWRMKQRQKK 30 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
No 492
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=21.01 E-value=99 Score=25.97 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHH
Q psy17239 11 YILGTLILIALTICWYVY 28 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy 28 (115)
++++..++++++||-|+.
T Consensus 297 Ilil~~~lG~~lg~~~vL 314 (325)
T PRK15471 297 TLVLAVLLGGMIGAGIVL 314 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
No 493
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.99 E-value=3e+02 Score=26.10 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhHH-------HHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy17239 8 VKDYILGTLILIALTIC-------WYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERAR 66 (115)
Q Consensus 8 ~KD~~Lv~slvia~~Gc-------WfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~ 66 (115)
+..++++++++..++|+ |-...+-|=||+-+++=+||.||=..-......+|.++...+
T Consensus 481 l~~Lvl~vllvllVIAiiD~~~QR~~f~KkLKMSKQEVKdE~KEsEGDPeIKaRRRqlqREmar~r 546 (646)
T PRK12773 481 SFKIFLIVGIILLAISIVDYLYQRYEYEESLKMTPSEAKREAKESDGDRSLQARRRQLARDMMNKR 546 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc
No 494
>PF15456 Uds1: Up-regulated During Septation
Probab=20.98 E-value=3.5e+02 Score=19.92 Aligned_cols=44 Identities=30% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17239 46 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQAL 89 (115)
Q Consensus 46 e~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~ 89 (115)
++..++|.+|....++.+....+-.++..--..+.+++=+|+++
T Consensus 74 ~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rLLeH~Aa 117 (124)
T PF15456_consen 74 ESSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRLLEHTAA 117 (124)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=20.97 E-value=43 Score=26.78 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHH
Q psy17239 12 ILGTLILIALTICWYVY 28 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy 28 (115)
+.++-+++++++||+.|
T Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (331)
T PRK03598 9 LAVVVLAAAVAGGWWWY 25 (331)
T ss_pred hHHHHHHHHHHHheeEe
No 496
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.96 E-value=3.5e+02 Score=19.87 Aligned_cols=59 Identities=36% Similarity=0.496 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHh
Q psy17239 48 LQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQE 113 (115)
Q Consensus 48 Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~~~~~sdlEv~~LkqE 113 (115)
|++-|..+.-+|.++.....+......|-..|-.+..+......+.+.|.. ++..|++.
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~-------el~~l~~r 83 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQ-------ELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
No 497
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=20.95 E-value=2.6e+02 Score=18.46 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHhhC
Q psy17239 46 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115 (115)
Q Consensus 46 e~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~~~~~sdlEv~~LkqEie 115 (115)
..|+.==.+=..+|++|.+.+..+-.....-+.-|.+.++ |.. +|..|+.+++
T Consensus 4 saL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~e----------L~~-------ei~~L~~e~e 56 (61)
T PF08826_consen 4 SALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRE----------LEQ-------EIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH-------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH-------HHHHHHHHHH
No 498
>PRK09379 membrane-bound transcriptional regulator LytR; Provisional
Probab=20.93 E-value=1.2e+02 Score=25.00 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhH
Q psy17239 11 YILGTLILIALTICWYVYRQKESS 34 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Qnk~S 34 (115)
.+++++++++.+.+|++|.--+.+
T Consensus 11 ~~l~~l~~~~~~~~~~~~~~~~~~ 34 (303)
T PRK09379 11 GIIGVLIIGGGIYAYNVYSSVSNT 34 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
No 499
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=20.93 E-value=2.8e+02 Score=18.77 Aligned_cols=47 Identities=9% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHhhhhhHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy17239 18 LIALTICWYVYRQKESSQ-------QHLRRMMKDMEGLQRAELDLANLQKELER 64 (115)
Q Consensus 18 via~~GcWfAy~Qnk~Sk-------~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~ 64 (115)
+.|+--||..|--.|.++ ..=++++.-++.+-..=..+.+.-+.+..
T Consensus 14 ~fA~LFv~Ll~yvlK~~~~re~~~~~RE~kyq~~I~~lte~~~~~~~~~~dv~e 67 (71)
T PF10960_consen 14 IFAVLFVWLLFYVLKENKKREEKQEEREEKYQEQIEKLTEKLNVIEEIKEDVKE 67 (71)
T ss_pred cHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=20.92 E-value=6.4e+02 Score=22.96 Aligned_cols=88 Identities=20% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q psy17239 25 WYVYRQKESSQQHLRRMMKDME----GLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSS 100 (115)
Q Consensus 25 WfAy~Qnk~Sk~hl~kmmkDle----~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~~~ 100 (115)
+.++.+.......+...-.+++ .+..++..+..++.+++.++.+......+...++.++.. .+.+...+....
T Consensus 221 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---l~~~i~~~~~~i 297 (1179)
T TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE---LQKELYALANEI 297 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q ss_pred cccHHHHHHHHHhhC
Q psy17239 101 AFSDLEVCQLKQEIE 115 (115)
Q Consensus 101 ~~sdlEv~~LkqEie 115 (115)
....-++..+++++.
T Consensus 298 ~~~~~~~~~~~~~~~ 312 (1179)
T TIGR02168 298 SRLEQQKQILRERLA 312 (1179)
T ss_pred HHHHhHHHHHHHHHH
Done!