Query psy17239
Match_columns 115
No_of_seqs 34 out of 36
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 16:52:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 89.4 1.2 4.1E-05 41.1 8.1 51 35-85 959-1016(1080)
2 1wt6_A Myotonin-protein kinase 83.8 5 0.00017 27.5 6.9 40 46-85 31-70 (81)
3 2v66_B Nuclear distribution pr 75.7 18 0.00062 25.6 7.9 56 30-85 4-67 (111)
4 2v71_A Nuclear distribution pr 73.5 25 0.00084 26.9 8.7 50 51-114 128-177 (189)
5 1zza_A Stannin, AG8_1; helix, 73.2 1.4 4.8E-05 30.5 1.5 33 2-34 5-44 (90)
6 2eqb_B RAB guanine nucleotide 68.4 27 0.00093 24.3 8.2 50 34-86 10-59 (97)
7 3nmd_A CGMP dependent protein 66.3 26 0.00088 23.3 7.0 31 55-85 21-51 (72)
8 3oja_A Leucine-rich immune mol 65.9 49 0.0017 26.4 9.8 52 34-85 415-467 (487)
9 3tnu_B Keratin, type II cytosk 65.7 10 0.00035 26.3 4.7 42 44-85 27-68 (129)
10 2rdd_B UPF0092 membrane protei 65.3 9.5 0.00032 21.7 3.7 8 30-37 24-31 (37)
11 3oja_B Anopheles plasmodium-re 64.8 36 0.0012 27.6 8.4 19 67-85 537-555 (597)
12 3ol1_A Vimentin; structural ge 64.3 15 0.00052 25.4 5.4 64 20-85 13-80 (119)
13 3tnu_A Keratin, type I cytoske 62.8 8.6 0.00029 26.8 3.9 41 45-85 30-70 (131)
14 2no2_A HIP-I, huntingtin-inter 61.4 18 0.00061 25.0 5.3 31 55-85 10-40 (107)
15 1wt6_A Myotonin-protein kinase 59.6 7.7 0.00026 26.5 3.0 30 56-85 27-56 (81)
16 2ocy_A RAB guanine nucleotide 59.1 52 0.0018 24.4 8.2 48 35-85 43-90 (154)
17 3u1c_A Tropomyosin alpha-1 cha 56.8 42 0.0014 22.6 6.6 18 51-68 42-59 (101)
18 1go4_E MAD1 (mitotic arrest de 56.4 29 0.00099 24.2 5.6 41 54-95 13-53 (100)
19 2ks1_B Epidermal growth factor 56.2 13 0.00043 22.4 3.3 23 12-34 18-40 (44)
20 2l2t_A Receptor tyrosine-prote 56.1 12 0.00041 22.7 3.2 19 15-33 20-38 (44)
21 3o0z_A RHO-associated protein 55.5 56 0.0019 24.6 7.5 44 37-80 31-75 (168)
22 2i1j_A Moesin; FERM, coiled-co 54.2 2.6 8.8E-05 36.2 -0.1 11 75-85 406-416 (575)
23 2eqb_B RAB guanine nucleotide 53.6 17 0.00058 25.3 4.1 32 54-85 6-37 (97)
24 3vkg_A Dynein heavy chain, cyt 53.3 36 0.0012 35.5 7.7 41 45-85 2027-2067(3245)
25 1oqw_A Fimbrial protein; type 53.2 46 0.0016 22.6 6.3 23 30-52 25-47 (144)
26 2f95_B Sensory rhodopsin II tr 51.5 6.4 0.00022 25.7 1.5 37 12-48 61-97 (163)
27 3twe_A Alpha4H; unknown functi 51.1 14 0.00049 20.4 2.7 15 53-67 8-22 (27)
28 3o0z_A RHO-associated protein 50.1 80 0.0027 23.8 8.9 55 27-81 77-132 (168)
29 3bas_A Myosin heavy chain, str 49.6 52 0.0018 21.6 6.8 33 53-85 49-81 (89)
30 1f5n_A Interferon-induced guan 49.6 51 0.0017 28.5 7.3 14 54-67 505-518 (592)
31 1ykh_B RNA polymerase II holoe 49.5 43 0.0015 23.6 5.8 34 52-85 91-124 (132)
32 3cve_A Homer protein homolog 1 49.1 54 0.0018 21.6 6.1 33 51-83 19-51 (72)
33 1z65_A PRPLP, prion-like prote 49.0 3.5 0.00012 23.7 -0.1 8 21-28 5-12 (30)
34 3cvf_A Homer-3, homer protein 48.9 57 0.0019 21.8 6.1 34 50-83 24-57 (79)
35 2e7s_A RAB guanine nucleotide 48.9 31 0.0011 25.2 5.0 74 8-86 6-79 (135)
36 1f5n_A Interferon-induced guan 48.0 93 0.0032 26.8 8.6 41 29-71 519-559 (592)
37 3u59_A Tropomyosin beta chain; 47.3 60 0.002 21.6 8.1 36 50-85 62-97 (101)
38 3cve_A Homer protein homolog 1 46.3 25 0.00084 23.3 3.8 28 58-85 5-32 (72)
39 2k48_A Nucleoprotein; viral pr 46.2 49 0.0017 23.6 5.5 45 41-85 33-83 (107)
40 3mq9_A Bone marrow stromal ant 46.1 78 0.0027 25.1 7.4 49 36-84 380-439 (471)
41 3qh9_A Liprin-beta-2; coiled-c 46.0 49 0.0017 22.5 5.3 55 57-114 23-77 (81)
42 3na7_A HP0958; flagellar bioge 45.8 48 0.0016 25.0 5.9 39 47-85 33-71 (256)
43 2i1j_A Moesin; FERM, coiled-co 44.9 53 0.0018 28.1 6.6 46 50-98 332-384 (575)
44 3hnw_A Uncharacterized protein 44.0 85 0.0029 22.3 10.1 44 38-84 77-120 (138)
45 1yke_B RNA polymerase II holoe 43.9 90 0.0031 22.6 9.4 62 25-87 54-126 (151)
46 3lb6_C IL-13, interleukin-13 r 43.7 4.9 0.00017 31.3 0.0 25 14-38 349-373 (380)
47 3sw1_A Sensory box protein; li 42.2 6.8 0.00023 24.3 0.5 26 42-67 136-161 (162)
48 2e7s_A RAB guanine nucleotide 42.1 32 0.0011 25.1 4.2 42 44-85 16-57 (135)
49 3s9g_A Protein hexim1; cyclin 41.6 61 0.0021 23.0 5.4 22 53-74 37-58 (104)
50 2f95_B Sensory rhodopsin II tr 41.5 15 0.00051 23.9 2.1 20 11-30 63-82 (163)
51 3hnw_A Uncharacterized protein 40.4 97 0.0033 22.0 11.7 58 25-85 71-128 (138)
52 3eff_K Voltage-gated potassium 39.5 85 0.0029 21.1 6.0 13 6-18 64-76 (139)
53 2fxo_A Myosin heavy chain, car 38.6 95 0.0032 21.4 6.3 21 66-86 68-88 (129)
54 3iv1_A Tumor susceptibility ge 38.1 88 0.003 20.9 8.8 55 31-85 13-71 (78)
55 1v54_D Cytochrome C oxidase su 36.7 30 0.001 25.5 3.3 29 4-33 74-102 (147)
56 2hi2_A Fimbrial protein; type 36.3 53 0.0018 22.5 4.4 25 30-54 25-49 (158)
57 1uix_A RHO-associated kinase; 36.0 92 0.0032 20.5 8.0 46 37-85 5-50 (71)
58 3sok_A Fimbrial protein; pilus 34.2 1.1E+02 0.0039 21.0 6.4 18 33-50 28-45 (151)
59 2v71_A Nuclear distribution pr 33.7 1.6E+02 0.0053 22.4 7.7 56 30-85 57-120 (189)
60 2lx0_A Membrane fusion protein 33.7 37 0.0013 19.4 2.7 20 13-32 12-32 (32)
61 2jwa_A Receptor tyrosine-prote 33.4 46 0.0016 20.1 3.2 21 13-33 19-39 (44)
62 3oja_A Leucine-rich immune mol 32.9 1.8E+02 0.0063 23.0 8.2 48 38-85 412-460 (487)
63 2pr5_A Blue-light photorecepto 32.7 31 0.0011 21.0 2.5 23 42-64 108-130 (132)
64 2y69_D Cytochrome C oxidase su 30.8 41 0.0014 25.4 3.3 29 4-33 96-124 (169)
65 1i84_S Smooth muscle myosin he 30.6 50 0.0017 30.3 4.4 7 77-83 923-929 (1184)
66 3arc_J Photosystem II reaction 29.5 58 0.002 19.6 3.2 27 1-27 1-30 (40)
67 1x79_B RAB GTPase binding effe 26.3 1.7E+02 0.0059 20.6 8.5 41 31-71 37-77 (112)
68 1l8d_A DNA double-strand break 26.3 1.4E+02 0.0047 19.4 6.6 38 48-85 5-42 (112)
69 3vp9_A General transcriptional 26.2 77 0.0026 21.7 3.8 14 101-115 72-85 (92)
70 3u06_A Protein claret segregat 26.2 1E+02 0.0034 25.4 5.1 27 54-80 11-37 (412)
71 3j1r_A Archaeal adhesion filam 26.0 75 0.0026 17.5 3.0 16 13-28 7-22 (26)
72 3kqg_A Langerin, C-type lectin 25.5 71 0.0024 21.7 3.6 31 37-67 7-37 (182)
73 4f6r_C Stathmin-like domain R1 25.4 75 0.0026 21.7 3.6 20 52-71 41-60 (87)
74 2jee_A YIIU; FTSZ, septum, coi 25.3 1.6E+02 0.0053 19.8 6.3 30 49-78 16-45 (81)
75 4g3b_A Alpha4F3D; alpha helix, 25.2 68 0.0023 17.5 2.7 15 53-67 8-22 (26)
76 2ocy_A RAB guanine nucleotide 24.8 2.1E+02 0.0072 21.1 6.7 48 38-85 22-69 (154)
77 2aze_B Transcription factor E2 23.8 1.4E+02 0.0048 20.3 4.8 28 36-63 6-33 (106)
78 1gk6_A Vimentin; intermediate 23.6 1.3E+02 0.0045 18.3 5.7 45 52-96 6-58 (59)
79 3mtu_A Tropomyosin alpha-1 cha 23.5 1.5E+02 0.0052 19.0 5.7 16 66-81 15-30 (75)
80 3s0r_A De novo designed helica 23.1 1.1E+02 0.0037 17.2 3.7 20 51-70 3-22 (30)
81 4etp_A Kinesin-like protein KA 23.1 1.4E+02 0.0049 24.2 5.5 23 51-73 15-37 (403)
82 3ne5_B Cation efflux system pr 23.1 18 0.0006 28.9 0.0 14 15-28 13-26 (413)
83 3s9g_A Protein hexim1; cyclin 22.5 35 0.0012 24.2 1.5 13 73-85 36-48 (104)
84 1j1d_B Troponin T, TNT; THIN f 22.1 2E+02 0.0069 19.9 6.4 29 57-85 46-74 (106)
85 2lk9_A Bone marrow stromal ant 21.9 77 0.0026 18.5 2.6 23 13-35 12-34 (35)
86 3vkg_A Dynein heavy chain, cyt 21.6 3E+02 0.01 29.0 8.3 32 35-66 1916-1947(3245)
87 3f42_A Protein HP0035; helicob 20.4 1E+02 0.0034 20.9 3.4 15 57-71 14-28 (99)
88 3mq7_A Bone marrow stromal ant 20.3 2.5E+02 0.0085 20.3 6.8 10 43-52 36-45 (121)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.44 E-value=1.2 Score=41.10 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 35 QQHLRRMMKDMEGLQRAELD-------LANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 35 k~hl~kmmkDle~Lq~AE~s-------L~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
...+.+|-+|++.|+..+.+ ..+|+++++..+++.+....|+..+|++...
T Consensus 959 ~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~ 1016 (1080)
T 2dfs_A 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016 (1080)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665544 4667788888888888888888888887765
No 2
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=83.79 E-value=5 Score=27.45 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 46 EGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 46 e~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
|.|.+...++..++++|..|...++.-..|..+|+.+|++
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777788888899999999999999999999999888
No 3
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=75.74 E-value=18 Score=25.57 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHHHHhhHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 30 QKESSQQHLRRMMKDMEGLQR-AEL-------DLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 30 Qnk~Sk~hl~kmmkDle~Lq~-AE~-------sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
++|--+....++--+.|+++. .++ ....||+++...+..+++...-...||++-.+
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDD 67 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 67 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 566677888888888888753 222 34559999999999999988888888887776
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=73.54 E-value=25 Score=26.89 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHhh
Q psy17239 51 AELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEI 114 (115)
Q Consensus 51 AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~~~~~sdlEv~~LkqEi 114 (115)
+..++.|++.+|.+|=+..--...|-. +-..+.....||++ |++.|++|+
T Consensus 128 ~~~SleD~e~kln~aiEr~alLE~El~-------EKe~l~~~~QRLkd-------E~rDLk~El 177 (189)
T 2v71_A 128 TIMSLEDFEQRLNQAIERNAFLESELD-------EKESLLVSVQRLKD-------EARDLRQEL 177 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHCCC---------------------
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 456778888888877766655544433 21124556667766 666677665
No 5
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=73.19 E-value=1.4 Score=30.51 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=21.5
Q ss_pred CCCCCchHHHHHHHHHHHHH-------hHHHHHHhhhhhH
Q psy17239 2 INSTSHVKDYILGTLILIAL-------TICWYVYRQKESS 34 (115)
Q Consensus 2 ~~~~n~~KD~~Lv~slvia~-------~GcWfAy~Qnk~S 34 (115)
|-.||..--++-|+.|+||+ .|||.+.+=.|-+
T Consensus 5 i~dhspttgvvtv~viliavaalg~li~gcwcylrlqri~ 44 (90)
T 1zza_A 5 IMDHSPTTGVVTVIVILIAIAALGALILGCWCYLRLQRIS 44 (90)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCSSC
T ss_pred eeccCCCcceEEehhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567777776666666654 5999887654443
No 6
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.44 E-value=27 Score=24.31 Aligned_cols=50 Identities=10% Similarity=0.318 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 34 SQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEH 86 (115)
Q Consensus 34 Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~ 86 (115)
++..+.++=..+. ..+..+..|+.+|...+.-...+..++..++.++.+.
T Consensus 10 lre~l~~le~~~~---~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 10 LKEDYNTLKRELS---DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544433 3677888899999999999999999999999999883
No 7
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.28 E-value=26 Score=23.27 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 55 LANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 55 L~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+.+||.-|++.-+|-+.-..--..||.++.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~e 51 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQ 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777666655556666666665
No 8
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=65.93 E-value=49 Score=26.36 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 34 SQQHLRRMMKDMEGLQ-RAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 34 Sk~hl~kmmkDle~Lq-~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
...+...|.++++..+ ++++.....|++.++-++++.....+-.++..++.+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 415 IVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 3344555666666555 566666666666666666666666666666666655
No 9
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.65 E-value=10 Score=26.29 Aligned_cols=42 Identities=14% Similarity=0.376 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 44 DMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 44 Dle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+=+.|+.+...+.++...++.-+-+-+.....+..||..+.+
T Consensus 27 ~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 27 HGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334455566666666666666666666666666666666655
No 10
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=65.30 E-value=9.5 Score=21.69 Aligned_cols=8 Identities=25% Similarity=0.663 Sum_probs=5.5
Q ss_pred hhhhHHHH
Q psy17239 30 QKESSQQH 37 (115)
Q Consensus 30 Qnk~Sk~h 37 (115)
|+|..|+|
T Consensus 24 Q~Kr~K~~ 31 (37)
T 2rdd_B 24 QQKRTKEH 31 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67766666
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=64.81 E-value=36 Score=27.55 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17239 67 QEQENAASEKIKLERRLQE 85 (115)
Q Consensus 67 ~e~~~v~~EK~~LE~kl~~ 85 (115)
++.+....|+..+|+++++
T Consensus 537 ~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhh
Confidence 3333344455555555544
No 12
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=64.30 E-value=15 Score=25.42 Aligned_cols=64 Identities=11% Similarity=0.170 Sum_probs=37.7
Q ss_pred HHhHHHHHHhhhhhHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 20 ALTICWYVYRQKESSQQHLRRMMKDMEG----LQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 20 a~~GcWfAy~Qnk~Sk~hl~kmmkDle~----Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
.+...|++|+.. .+..|..+..|=-. +..+..++.|+..+.+....-+.++..+-..|-+-+.+
T Consensus 13 ~~~~~ye~~I~~--LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~ 80 (119)
T 3ol1_A 13 RLGDLYEEEMRE--LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 80 (119)
T ss_dssp CCTHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccH
Confidence 345567777643 44455544444322 34566777888888887776666666665555444443
No 13
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.84 E-value=8.6 Score=26.84 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 45 MEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 45 le~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
=+.|+.+...+.++...++.-+-+-+.....|..||..+.+
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34455555555555555555555555555555555555554
No 14
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=61.38 E-value=18 Score=25.03 Aligned_cols=31 Identities=35% Similarity=0.408 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 55 LANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 55 L~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
..|.+|.|..++..+..+..+|.+|+.++.+
T Consensus 10 ~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~ 40 (107)
T 2no2_A 10 NAEVTKQVSMARQAQVDLEREKKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888889999999999899988888877
No 15
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=59.57 E-value=7.7 Score=26.50 Aligned_cols=30 Identities=30% Similarity=0.426 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 56 ANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 56 ~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
.-+|++|.+.+..+.+...+-++-|.+-++
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~e 56 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRD 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666665555544444444333
No 16
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.08 E-value=52 Score=24.38 Aligned_cols=48 Identities=13% Similarity=0.367 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 35 QQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 35 k~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+.++.++-.+ +..-+..+..|+.+|...+.-...+..+|..+++++.+
T Consensus 43 r~~~~~l~~~---~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEe 90 (154)
T 2ocy_A 43 KEDYNTLKRE---LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 90 (154)
T ss_dssp HHHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444322 34456666677777777777777777777777777766
No 17
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=56.77 E-value=42 Score=22.55 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17239 51 AELDLANLQKELERARQE 68 (115)
Q Consensus 51 AE~sL~dLQ~~Le~A~~e 68 (115)
+|..+..||+++.....+
T Consensus 42 ~E~Ei~sL~kk~~~lE~e 59 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDS 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 18
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=56.40 E-value=29 Score=24.19 Aligned_cols=41 Identities=32% Similarity=0.437 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy17239 54 DLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASD 95 (115)
Q Consensus 54 sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~ 95 (115)
.+..|.++++..+.|+..-..+|..||-+|.. ...+|+-..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~-~~l~Gd~~~ 53 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER-RALQGDYDQ 53 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCCSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccccCC
Confidence 67789999999999999999999999999854 235565544
No 19
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=56.22 E-value=13 Score=22.45 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhH
Q psy17239 12 ILGTLILIALTICWYVYRQKESS 34 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~S 34 (115)
+-.++++..++++||.|.=+|+-
T Consensus 18 VgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 18 VGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHHHhhhhHh
Confidence 33356666777888888766653
No 20
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=56.10 E-value=12 Score=22.69 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=12.7
Q ss_pred HHHHHHHhHHHHHHhhhhh
Q psy17239 15 TLILIALTICWYVYRQKES 33 (115)
Q Consensus 15 ~slvia~~GcWfAy~Qnk~ 33 (115)
++++..++++||.|.=+|+
T Consensus 20 v~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 4555667788888876554
No 21
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=55.54 E-value=56 Score=24.64 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=25.0
Q ss_pred HHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 37 HLRRMMKDME-GLQRAELDLANLQKELERARQEQENAASEKIKLE 80 (115)
Q Consensus 37 hl~kmmkDle-~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE 80 (115)
.++|.-.++. .++.+|..+.|||.++-..+........+..+|.
T Consensus 31 rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQ 75 (168)
T 3o0z_A 31 RLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQ 75 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444554 5566666666776666666655555555554443
No 22
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=54.19 E-value=2.6 Score=36.19 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q psy17239 75 EKIKLERRLQE 85 (115)
Q Consensus 75 EK~~LE~kl~~ 85 (115)
||..|++++++
T Consensus 406 e~~~l~~~~~~ 416 (575)
T 2i1j_A 406 ERQKLEDEIRA 416 (575)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 23
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.62 E-value=17 Score=25.35 Aligned_cols=32 Identities=13% Similarity=0.319 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 54 DLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 54 sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
.|..+..+|..++.+...+..|+..|-.++.+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~e 37 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAK 37 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45566666666666666666666666655554
No 24
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.30 E-value=36 Score=35.50 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 45 MEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 45 le~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
++.|..++..|.+++++|+.-+.+-.....||+.|+.++..
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777777777777788887766654
No 25
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=53.21 E-value=46 Score=22.63 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=10.7
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHH
Q psy17239 30 QKESSQQHLRRMMKDMEGLQRAE 52 (115)
Q Consensus 30 Qnk~Sk~hl~kmmkDle~Lq~AE 52 (115)
|+-..+.++.....++..|+.|-
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~a~ 47 (144)
T 1oqw_A 25 QNYVARSEGASALASVNPLKTTV 47 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555544443
No 26
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=51.48 E-value=6.4 Score=25.71 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHH
Q psy17239 12 ILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGL 48 (115)
Q Consensus 12 ~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~L 48 (115)
++++++++.+++++++|.-.+.--.-++++.+.++.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~i~~pl~~l~~~~~~i 97 (163)
T 2f95_B 61 ILGLIILLGINLGLVAATLGGDTAASLSTLAAKASRM 97 (163)
T ss_dssp HHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555544454444555555555444
No 27
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=51.10 E-value=14 Score=20.42 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy17239 53 LDLANLQKELERARQ 67 (115)
Q Consensus 53 ~sL~dLQ~~Le~A~~ 67 (115)
.+|+|||++|.+-+.
T Consensus 8 keledlqerlrklrk 22 (27)
T 3twe_A 8 KELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 357788888776554
No 28
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=50.05 E-value=80 Score=23.78 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=34.2
Q ss_pred HHhhhhhHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 27 VYRQKESSQQHLRRMMKDMEG-LQRAELDLANLQKELERARQEQENAASEKIKLER 81 (115)
Q Consensus 27 Ay~Qnk~Sk~hl~kmmkDle~-Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~ 81 (115)
+.-|-|.++.|...+.+||++ .+..+..+..+-.++.++..+.+....-.-.||+
T Consensus 77 ~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 77 ILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777888888888888875 4555555555555555555555554444444443
No 29
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=49.62 E-value=52 Score=21.57 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 53 LDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 53 ~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+.-.+|+..+..|.+-+..-...|+.||.++.+
T Consensus 49 ~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~e 81 (89)
T 3bas_A 49 EQKNDLFGSMKQLEDKVEELLSKNYHLENEVAR 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666677777777766
No 30
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=49.61 E-value=51 Score=28.48 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q psy17239 54 DLANLQKELERARQ 67 (115)
Q Consensus 54 sL~dLQ~~Le~A~~ 67 (115)
.|.+.|++++.--+
T Consensus 505 ~l~~~~~~~~~~~~ 518 (592)
T 1f5n_A 505 MLHEMQRKNEQMME 518 (592)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 31
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=49.52 E-value=43 Score=23.61 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 52 ELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 52 E~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
...+..|+++++.+..+.+.+..|+..|=+++++
T Consensus 91 ~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999888877
No 32
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=49.10 E-value=54 Score=21.57 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 51 AELDLANLQKELERARQEQENAASEKIKLERRL 83 (115)
Q Consensus 51 AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl 83 (115)
-|..+.+|+.+|+.++.++.....|..++=.-|
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888888888888876665444
No 33
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=48.99 E-value=3.5 Score=23.67 Aligned_cols=8 Identities=25% Similarity=0.575 Sum_probs=6.5
Q ss_pred HhHHHHHH
Q psy17239 21 LTICWYVY 28 (115)
Q Consensus 21 ~~GcWfAy 28 (115)
+||||.|.
T Consensus 5 LG~~wlai 12 (30)
T 1z65_A 5 LGTWWVAI 12 (30)
T ss_dssp CSSHHHHH
T ss_pred hhhhHHHH
Confidence 58999885
No 34
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=48.95 E-value=57 Score=21.78 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 50 RAELDLANLQKELERARQEQENAASEKIKLERRL 83 (115)
Q Consensus 50 ~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl 83 (115)
.-|..+.+|+.+|+.++.++.....|...+=..|
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888888888888876665544
No 35
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.93 E-value=31 Score=25.21 Aligned_cols=74 Identities=11% Similarity=0.235 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 8 VKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEH 86 (115)
Q Consensus 8 ~KD~~Lv~slvia~~GcWfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~ 86 (115)
+-|-++++..-++..+ -...+.-..+.|++++-+++ ..-+..+..|+.+|...+.-...+..+|..++.++.+.
T Consensus 6 LEd~L~~~r~~l~~~~--~~~~~le~l~~~l~~l~~~l---~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 6 LEEQLNKSLKTIASQK--AAIENYNQLKEDYNTLKREL---SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 79 (135)
T ss_dssp CCSTTTHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT---TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444332 23344455666777776544 45667788899999999888889999999999998873
No 36
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=47.99 E-value=93 Score=26.85 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=22.4
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 29 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQEN 71 (115)
Q Consensus 29 ~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~ 71 (115)
.|.|+.+.||++|..+||. ..++-+.+.+..|+.--.||..
T Consensus 519 ~~~~~~~e~~~ql~~kme~--~~~~~~~e~~~~~~~~~~~~~~ 559 (592)
T 1f5n_A 519 QKERSYQEHLKQLTEKMEN--DRVQLLKEQERTLALKLQEQEQ 559 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777776663 2334444444444444444333
No 37
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=47.32 E-value=60 Score=21.56 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 50 RAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 50 ~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+++..|.+.+.+|+.+...-..+..+-..|-|+++-
T Consensus 62 ~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 62 KYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555666665555555555666666666653
No 38
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=46.34 E-value=25 Score=23.25 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 58 LQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 58 LQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+..+|+.+..++..-...-+.||..|.+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4445555555555544444455555544
No 39
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=46.21 E-value=49 Score=23.58 Aligned_cols=45 Identities=24% Similarity=0.326 Sum_probs=26.5
Q ss_pred HHHhhHHHHH----HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q psy17239 41 MMKDMEGLQR----AELDLANLQKELERARQEQE--NAASEKIKLERRLQE 85 (115)
Q Consensus 41 mmkDle~Lq~----AE~sL~dLQ~~Le~A~~e~~--~v~~EK~~LE~kl~~ 85 (115)
||.||+.||. -|+.|.--+.+|..|...-+ .-.+-|+-+.++-..
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~ 83 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAA 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6888887775 46677777777777654322 223335555554443
No 40
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=46.11 E-value=78 Score=25.07 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=25.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Q psy17239 36 QHLRRMMKDMEGLQRAELDLANLQKELERARQ-----------EQENAASEKIKLERRLQ 84 (115)
Q Consensus 36 ~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~-----------e~~~v~~EK~~LE~kl~ 84 (115)
.-+++.+++.-.-..++.--..||++|.++|. -+++|.+--..||+|..
T Consensus 380 ~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (471)
T 3mq9_A 380 TRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA 439 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHH
Confidence 33444444443333444444556666655543 35566666667776653
No 41
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=46.00 E-value=49 Score=22.51 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHhh
Q psy17239 57 NLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEI 114 (115)
Q Consensus 57 dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~~~~~sdlEv~~LkqEi 114 (115)
+|=.++..-+.--.....|+..-|+||+. .+.+-..|...-...|-|+.+|..++
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKs---TK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKA---TKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34445555555566677788888889887 55455555543344666777776654
No 42
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=45.76 E-value=48 Score=24.98 Aligned_cols=39 Identities=23% Similarity=0.178 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 47 GLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 47 ~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
.|...+..+..++.++..++.+-.....+...+|..+.+
T Consensus 33 el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~ 71 (256)
T 3na7_A 33 DLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666666655544
No 43
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=44.87 E-value=53 Score=28.05 Aligned_cols=46 Identities=28% Similarity=0.468 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhcccccccc
Q psy17239 50 RAELDLANLQKELERARQEQENAASE-------KIKLERRLQEHQALQGDASDLKS 98 (115)
Q Consensus 50 ~AE~sL~dLQ~~Le~A~~e~~~v~~E-------K~~LE~kl~~~~~~~~~~~~l~~ 98 (115)
.||....+|+.+|...+++.+.+..+ ...|+++++. ++.++..|..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~---~~~e~~~l~~ 384 (575)
T 2i1j_A 332 RAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQ---LQAAKEELEQ 384 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 35555555555555555544444333 3334444444 4444444444
No 44
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.95 E-value=85 Score=22.34 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=19.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 38 LRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQ 84 (115)
Q Consensus 38 l~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~ 84 (115)
...+-.+++.+ +..+.+|-.+|..++...+.+..+...|.++..
T Consensus 77 ~~~L~~~l~~~---~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~ 120 (138)
T 3hnw_A 77 ADSLSLDIENK---DKEIYDLKHELIAAQIKAESSAKEIKELKSEIN 120 (138)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 334444444444444444444444444444443
No 45
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=43.87 E-value=90 Score=22.61 Aligned_cols=62 Identities=21% Similarity=0.194 Sum_probs=44.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 25 WYVYRQKESSQQHLRRMMKDMEGLQR-----------AELDLANLQKELERARQEQENAASEKIKLERRLQEHQ 87 (115)
Q Consensus 25 WfAy~Qnk~Sk~hl~kmmkDle~Lq~-----------AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~ 87 (115)
=|+-.++.-|+.=|.+ .|+.|.|=. -...+..|+++++.+..+.+.+..|+..|=+++++..
T Consensus 54 ~f~~~~~ela~dli~k-akqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l 126 (151)
T 1yke_B 54 EFSNTIDELSTDIILK-TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLI 126 (151)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455444333322 466665532 3567899999999999999999999999999988733
No 46
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=43.67 E-value=4.9 Score=31.30 Aligned_cols=25 Identities=8% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHhhhhhHHHHH
Q psy17239 14 GTLILIALTICWYVYRQKESSQQHL 38 (115)
Q Consensus 14 v~slvia~~GcWfAy~Qnk~Sk~hl 38 (115)
++++++.+++|+|.+.+.|..++.|
T Consensus 349 ~~~~~~~l~~~~~~~~k~~~~~~~~ 373 (380)
T 3lb6_C 349 GFILILVIFVTGLLLRKPNTYPKMI 373 (380)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4455666777777777777776665
No 47
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=42.20 E-value=6.8 Score=24.32 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=17.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 42 MKDMEGLQRAELDLANLQKELERARQ 67 (115)
Q Consensus 42 mkDle~Lq~AE~sL~dLQ~~Le~A~~ 67 (115)
++|+...+++|..|..++++|+.++.
T Consensus 136 ~~DiTe~k~~e~~l~~~~~~l~~~~r 161 (162)
T 3sw1_A 136 QKDVSRQVELERELAELRARPKPDER 161 (162)
T ss_dssp EEECHHHHHHHHHHHHHTC-------
T ss_pred EEeCcHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999987754
No 48
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=42.14 E-value=32 Score=25.14 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 44 DMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 44 Dle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
.+.+.+.....|..+..++..+..+-..+..|+..|-.++.+
T Consensus 16 ~l~~~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~e 57 (135)
T 2e7s_A 16 TIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAK 57 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444445555555555444444455555555444443
No 49
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=41.65 E-value=61 Score=22.98 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy17239 53 LDLANLQKELERARQEQENAAS 74 (115)
Q Consensus 53 ~sL~dLQ~~Le~A~~e~~~v~~ 74 (115)
+...+|-++++.+++|+.....
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766644333
No 50
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=41.52 E-value=15 Score=23.88 Aligned_cols=20 Identities=5% Similarity=-0.260 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhHHHHHHhh
Q psy17239 11 YILGTLILIALTICWYVYRQ 30 (115)
Q Consensus 11 ~~Lv~slvia~~GcWfAy~Q 30 (115)
++++++++++++.+||..+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~ 82 (163)
T 2f95_B 63 GLIILLGINLGLVAATLGGD 82 (163)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554443
No 51
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=40.39 E-value=97 Score=22.01 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=35.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 25 WYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 25 WfAy~Qnk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
.-+-.+.......+..+-+.+.+|+. .|..+|.+++.+..+......+...|++++..
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~---el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKH---ELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444666777888888777777664 45555555555555555555555555555444
No 52
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=39.55 E-value=85 Score=21.08 Aligned_cols=13 Identities=0% Similarity=0.010 Sum_probs=4.7
Q ss_pred CchHHHHHHHHHH
Q psy17239 6 SHVKDYILGTLIL 18 (115)
Q Consensus 6 n~~KD~~Lv~slv 18 (115)
+..--++.++.++
T Consensus 64 t~~~r~~~~~~~~ 76 (139)
T 3eff_K 64 TLWGRLVAVVVMV 76 (139)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 3333333333333
No 53
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=38.64 E-value=95 Score=21.38 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17239 66 RQEQENAASEKIKLERRLQEH 86 (115)
Q Consensus 66 ~~e~~~v~~EK~~LE~kl~~~ 86 (115)
.+-+......|..||.++.+.
T Consensus 68 EE~~~~L~~~k~eLe~~l~el 88 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566777666663
No 54
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=38.05 E-value=88 Score=20.87 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 31 KESSQQHLRRMMKDMEGLQRAELDLANLQK----ELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 31 nk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~----~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+|.-+.-+.+.--+|++|.+.+..|..=+. .+++-+.|+..+.+....|.+|..+
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~E 71 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEE 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888899999999999987544 4556667777777777777777766
No 55
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=36.68 E-value=30 Score=25.53 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=20.0
Q ss_pred CCCchHHHHHHHHHHHHHhHHHHHHhhhhh
Q psy17239 4 STSHVKDYILGTLILIALTICWYVYRQKES 33 (115)
Q Consensus 4 ~~n~~KD~~Lv~slvia~~GcWfAy~Qnk~ 33 (115)
..+.||=++..+++++|+++.. .+.++.+
T Consensus 74 p~gewK~v~g~v~~~i~~s~~~-f~~~r~~ 102 (147)
T 1v54_D 74 STNEWKTVVGAAMFFIGFTALL-LIWEKHY 102 (147)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4468899999999989865544 4444443
No 56
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=36.32 E-value=53 Score=22.48 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHH
Q psy17239 30 QKESSQQHLRRMMKDMEGLQRAELD 54 (115)
Q Consensus 30 Qnk~Sk~hl~kmmkDle~Lq~AE~s 54 (115)
|+-..+.++...+.++..++.|-..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~a~~~ 49 (158)
T 2hi2_A 25 QDYTARAQVSEAILLAEGQKSAVTE 49 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3333445556666666666555443
No 57
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=36.04 E-value=92 Score=20.50 Aligned_cols=46 Identities=26% Similarity=0.393 Sum_probs=29.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 37 HLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 37 hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
.|..+-+..+.|- ..+...|+++++++++..+....|..+|+++..
T Consensus 5 ~v~~l~~E~eel~---~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~ 50 (71)
T 1uix_A 5 DVANLANEKEELN---NKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLT 50 (71)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 245556777777777777777888899988876
No 58
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=34.23 E-value=1.1e+02 Score=21.01 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHhhHHHHH
Q psy17239 33 SSQQHLRRMMKDMEGLQR 50 (115)
Q Consensus 33 ~Sk~hl~kmmkDle~Lq~ 50 (115)
..+.++.....++..++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~ 45 (151)
T 3sok_A 28 IARSQAAEGLTLADGLKV 45 (151)
T ss_dssp HHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 59
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=33.72 E-value=1.6e+02 Score=22.41 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHHHhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 30 QKESSQQHLRRMMKDMEGLQR--------AELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 30 Qnk~Sk~hl~kmmkDle~Lq~--------AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+++..+..+.++-.+.++++. +......||+++...+..+++...-...||..-.+
T Consensus 57 ~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDd 120 (189)
T 2v71_A 57 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 120 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455555666666666655421 12224555666666666666655555555544433
No 60
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=33.72 E-value=37 Score=19.37 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=11.1
Q ss_pred HHHHHHHHHhHHH-HHHhhhh
Q psy17239 13 LGTLILIALTICW-YVYRQKE 32 (115)
Q Consensus 13 Lv~slvia~~GcW-fAy~Qnk 32 (115)
||.++-....|.| |-|.|+|
T Consensus 12 lvalltflafgfwlfkylqkk 32 (32)
T 2lx0_A 12 LVALLTFLAFGFWLFKYLQKK 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 3334434445666 6788864
No 61
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=33.43 E-value=46 Score=20.09 Aligned_cols=21 Identities=14% Similarity=0.488 Sum_probs=12.7
Q ss_pred HHHHHHHHHhHHHHHHhhhhh
Q psy17239 13 LGTLILIALTICWYVYRQKES 33 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~Qnk~ 33 (115)
..+++++-++++||.|.=+|+
T Consensus 19 VGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 19 VGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhheehhh
Confidence 334555666677777765553
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.86 E-value=1.8e+02 Score=23.00 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=22.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 38 LRRMMKDMEGLQRAELDLANLQ-KELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 38 l~kmmkDle~Lq~AE~sL~dLQ-~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+++..+..|.+....+...+=. ...+..+++-+.-..|+..+++.+++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhh
Confidence 4444444444444433333222 22233334444444556666666666
No 63
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=32.70 E-value=31 Score=20.97 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=19.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Q psy17239 42 MKDMEGLQRAELDLANLQKELER 64 (115)
Q Consensus 42 mkDle~Lq~AE~sL~dLQ~~Le~ 64 (115)
.+|+...+++|+.|..++++|+.
T Consensus 108 ~~DITe~k~~e~~l~~~~~~l~~ 130 (132)
T 2pr5_A 108 QNDITKQKEYEKLLEDSLTEITA 130 (132)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCcHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999888864
No 64
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=30.81 E-value=41 Score=25.36 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=20.1
Q ss_pred CCCchHHHHHHHHHHHHHhHHHHHHhhhhh
Q psy17239 4 STSHVKDYILGTLILIALTICWYVYRQKES 33 (115)
Q Consensus 4 ~~n~~KD~~Lv~slvia~~GcWfAy~Qnk~ 33 (115)
+.+.||=++..+++++|+++ |+.+.++.+
T Consensus 96 ptgEWK~V~ggv~~~i~~s~-~~f~~~r~~ 124 (169)
T 2y69_D 96 STNEWKTVVGAAMFFIGFTA-LLLIWEKHY 124 (169)
T ss_dssp CCSHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45688999999999888655 444444543
No 65
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=30.55 E-value=50 Score=30.29 Aligned_cols=7 Identities=43% Similarity=0.425 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy17239 77 IKLERRL 83 (115)
Q Consensus 77 ~~LE~kl 83 (115)
..|++++
T Consensus 923 ~~Le~~l 929 (1184)
T 1i84_S 923 QELEEIL 929 (1184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 66
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=29.55 E-value=58 Score=19.57 Aligned_cols=27 Identities=15% Similarity=0.344 Sum_probs=15.3
Q ss_pred CCCCCCchHHHHHHH---HHHHHHhHHHHH
Q psy17239 1 MINSTSHVKDYILGT---LILIALTICWYV 27 (115)
Q Consensus 1 ~~~~~n~~KD~~Lv~---slvia~~GcWfA 27 (115)
|+++.-++-=|+..+ ..||++.|.+|+
T Consensus 1 mm~~tGRiPLWlvgtv~G~~vi~~~giFfy 30 (40)
T 3arc_J 1 MMSEGGRIPLWIVATVAGMGVIVIVGLFFY 30 (40)
T ss_dssp --CCTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCcccEEeeeeehhhhhhheeeEEEe
Confidence 344444544444433 467888888885
No 67
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=26.34 E-value=1.7e+02 Score=20.57 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 31 KESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQEN 71 (115)
Q Consensus 31 nk~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~ 71 (115)
+.+...|-+++-.=.+..+.+|+.|.+||+.-..++.+-+.
T Consensus 37 ~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 37 KQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666788888999999998888887765443
No 68
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.26 E-value=1.4e+02 Score=19.38 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 48 LQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 48 Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
|...+..+.++..+|...+........+...+++.+..
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455577888889998888888889999999988887
No 69
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=26.24 E-value=77 Score=21.74 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=11.9
Q ss_pred cccHHHHHHHHHhhC
Q psy17239 101 AFSDLEVCQLKQEIE 115 (115)
Q Consensus 101 ~~sdlEv~~LkqEie 115 (115)
.|.+ ||.+||.||+
T Consensus 72 ~YEe-EI~rLr~eLe 85 (92)
T 3vp9_A 72 AYEE-EIKHLKLGLE 85 (92)
T ss_dssp HHHH-HHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHH
Confidence 7888 9999998875
No 70
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.20 E-value=1e+02 Score=25.40 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 54 DLANLQKELERARQEQENAASEKIKLE 80 (115)
Q Consensus 54 sL~dLQ~~Le~A~~e~~~v~~EK~~LE 80 (115)
++.++++++++.+++.+....|...++
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333333333
No 71
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=25.95 E-value=75 Score=17.50 Aligned_cols=16 Identities=38% Similarity=0.428 Sum_probs=9.2
Q ss_pred HHHHHHHHHhHHHHHH
Q psy17239 13 LGTLILIALTICWYVY 28 (115)
Q Consensus 13 Lv~slvia~~GcWfAy 28 (115)
-+++|+||+++.=..|
T Consensus 7 ~~lLIviav~aaVlly 22 (26)
T 3j1r_A 7 TLLLILIAVAAAVLLY 22 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456677777654443
No 72
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=25.50 E-value=71 Score=21.65 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=19.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 37 HLRRMMKDMEGLQRAELDLANLQKELERARQ 67 (115)
Q Consensus 37 hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~ 67 (115)
-|..|.+|++.+..-...+..||.+|+..+.
T Consensus 7 ~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 7 QIPELKSDLEKASALNTKIRALQGSLENMSK 37 (182)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888887778888888888876554
No 73
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=25.40 E-value=75 Score=21.72 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17239 52 ELDLANLQKELERARQEQEN 71 (115)
Q Consensus 52 E~sL~dLQ~~Le~A~~e~~~ 71 (115)
..||++.|++|+.|.+-...
T Consensus 41 ~~SleeIqkKLeAAeERRks 60 (87)
T 4f6r_C 41 DPSLEEIQKKLEAAEERRKA 60 (87)
T ss_dssp -CTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 35899999999999554433
No 74
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.34 E-value=1.6e+02 Score=19.77 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 49 QRAELDLANLQKELERARQEQENAASEKIK 78 (115)
Q Consensus 49 q~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~ 78 (115)
+.|=....-||-+++.-++++.+...+.+.
T Consensus 16 q~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 16 QQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566677777777777666666555
No 75
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=25.18 E-value=68 Score=17.50 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy17239 53 LDLANLQKELERARQ 67 (115)
Q Consensus 53 ~sL~dLQ~~Le~A~~ 67 (115)
..|+|.|++|-+.+.
T Consensus 8 keled~qerlrk~rk 22 (26)
T 4g3b_A 8 KELEDXQERLRKXRK 22 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457777887776654
No 76
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.81 E-value=2.1e+02 Score=21.06 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=28.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 38 LRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 38 l~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+...=+.+++.+..-..|+.+..++..+..+...+..|+..|-.++.+
T Consensus 22 L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~ 69 (154)
T 2ocy_A 22 LNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAK 69 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 334444455555555555566666666666666777777777555544
No 77
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=23.82 E-value=1.4e+02 Score=20.35 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=21.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy17239 36 QHLRRMMKDMEGLQRAELDLANLQKELE 63 (115)
Q Consensus 36 ~hl~kmmkDle~Lq~AE~sL~dLQ~~Le 63 (115)
.++.++-++++.|...|..|..+-+.+.
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~ 33 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICT 33 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999998887655443
No 78
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=23.56 E-value=1.3e+02 Score=18.30 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh-hhcccccc
Q psy17239 52 ELDLANLQKELERARQEQENA-------ASEKIKLERRLQEHQA-LQGDASDL 96 (115)
Q Consensus 52 E~sL~dLQ~~Le~A~~e~~~v-------~~EK~~LE~kl~~~~~-~~~~~~~l 96 (115)
...+..+...|..++.+-... ..=|..|+-++.---. ++|+..++
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLEgEe~rl 58 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEGEESRI 58 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCcccc
Confidence 334444444454444444444 3346666655432100 55666554
No 79
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=23.46 E-value=1.5e+02 Score=18.95 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17239 66 RQEQENAASEKIKLER 81 (115)
Q Consensus 66 ~~e~~~v~~EK~~LE~ 81 (115)
+.+..++...-..+|+
T Consensus 15 k~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 15 KLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444444
No 80
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=23.11 E-value=1.1e+02 Score=17.16 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17239 51 AELDLANLQKELERARQEQE 70 (115)
Q Consensus 51 AE~sL~dLQ~~Le~A~~e~~ 70 (115)
||.+|+--|.-||+||-.-+
T Consensus 3 aesaleyaqqalekaqlalq 22 (30)
T 3s0r_A 3 AESALEYAQQALEKAQLALQ 22 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHH
Confidence 56666666777777665443
No 81
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.07 E-value=1.4e+02 Score=24.25 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 51 AELDLANLQKELERARQEQENAA 73 (115)
Q Consensus 51 AE~sL~dLQ~~Le~A~~e~~~v~ 73 (115)
.++...+++++++.++.+.+...
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 82
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=23.06 E-value=18 Score=28.91 Aligned_cols=14 Identities=14% Similarity=-0.104 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHH
Q psy17239 15 TLILIALTICWYVY 28 (115)
Q Consensus 15 ~slvia~~GcWfAy 28 (115)
+.+++|.+|+||+.
T Consensus 13 ~~~~~~~~~~~~~~ 26 (413)
T 3ne5_B 13 AGGIISAAGFTWVA 26 (413)
T ss_dssp --------------
T ss_pred HHHHHHHhHHHhcc
Confidence 33445555666553
No 83
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=22.49 E-value=35 Score=24.24 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q psy17239 73 ASEKIKLERRLQE 85 (115)
Q Consensus 73 ~~EK~~LE~kl~~ 85 (115)
+.|...||+++..
T Consensus 36 IqEYl~LE~~~s~ 48 (104)
T 3s9g_A 36 IKEYLELEKSLSR 48 (104)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444544444
No 84
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=22.06 E-value=2e+02 Score=19.85 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 57 NLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 57 dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
+|+.....--.--..+..||=+||.++..
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv~k 74 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKFKQ 74 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 34433333333345678888899888765
No 85
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=21.87 E-value=77 Score=18.54 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=7.9
Q ss_pred HHHHHHHHHhHHHHHHhhhhhHH
Q psy17239 13 LGTLILIALTICWYVYRQKESSQ 35 (115)
Q Consensus 13 Lv~slvia~~GcWfAy~Qnk~Sk 35 (115)
++++++.|+|---..|.-+.+||
T Consensus 12 l~LLviV~LgV~LI~f~~kAnsk 34 (35)
T 2lk9_A 12 LVLLIIVILGVPLIIFTIKKKKK 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHhcchheEEeeecccC
Confidence 44444445444444444444444
No 86
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.58 E-value=3e+02 Score=28.98 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy17239 35 QQHLRRMMKDMEGLQRAELDLANLQKELERAR 66 (115)
Q Consensus 35 k~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~ 66 (115)
....+|+-.=|+-|..|.....+||++|+.-+
T Consensus 1916 ~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~ 1947 (3245)
T 3vkg_A 1916 EEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKN 1947 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777777766666666655443
No 87
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=20.38 E-value=1e+02 Score=20.87 Aligned_cols=15 Identities=13% Similarity=0.477 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy17239 57 NLQKELERARQEQEN 71 (115)
Q Consensus 57 dLQ~~Le~A~~e~~~ 71 (115)
.+|++++++|++-.+
T Consensus 14 ~mQ~~m~~~QeeL~~ 28 (99)
T 3f42_A 14 GMKKEFSQLEEKNKD 28 (99)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 466666666655443
No 88
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.34 E-value=2.5e+02 Score=20.27 Aligned_cols=10 Identities=30% Similarity=0.527 Sum_probs=5.2
Q ss_pred HhhHHHHHHH
Q psy17239 43 KDMEGLQRAE 52 (115)
Q Consensus 43 kDle~Lq~AE 52 (115)
.-=++|+.+|
T Consensus 36 qAQe~l~~~e 45 (121)
T 3mq7_A 36 EAQKGFQDVE 45 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3335565555
Done!