Query psy17239
Match_columns 115
No_of_seqs 34 out of 36
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 16:53:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17239.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17239hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 52.3 8.4 0.00061 20.1 3.2 17 16-32 5-22 (27)
2 d1v54d_ f.23.1.1 (D:) Mitochon 44.7 8.8 0.00064 26.6 3.3 26 4-29 71-96 (144)
3 d1io1a_ e.32.1.1 (A:) Phase 1 40.6 45 0.0033 22.0 7.0 23 45-67 16-38 (395)
4 d1ykhb1 a.252.1.1 (B:2-130) RN 38.0 49 0.0036 21.7 9.4 35 51-85 89-123 (129)
5 d2p0ta1 a.290.1.1 (A:22-169) U 35.8 32 0.0023 23.1 5.1 71 32-112 45-116 (148)
6 d1nlwa_ a.38.1.1 (A:) Mad prot 35.3 38 0.0028 19.7 6.3 41 44-84 38-78 (79)
7 d2hi7b1 a.29.15.1 (B:14-162) D 27.7 23 0.0016 22.9 3.0 27 4-30 52-78 (149)
8 d2nr9a1 f.51.1.1 (A:4-192) Glp 25.9 23 0.0017 23.3 2.9 22 17-38 167-188 (189)
9 d1nkpa_ a.38.1.1 (A:) Myc prot 25.7 62 0.0045 19.0 7.0 42 44-85 43-84 (88)
10 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 25.1 53 0.0039 20.1 4.3 25 43-67 29-54 (67)
11 d2a26a1 a.2.16.1 (A:1-47) Calc 22.6 67 0.0049 18.3 4.5 15 71-85 28-42 (47)
12 d1fxka_ a.2.5.1 (A:) Prefoldin 21.4 85 0.0062 19.1 7.1 44 49-92 4-47 (107)
13 d1lqla_ d.227.1.1 (A:) Hypothe 20.5 25 0.0018 22.2 2.1 21 15-35 43-63 (141)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=52.33 E-value=8.4 Score=20.11 Aligned_cols=17 Identities=29% Similarity=0.557 Sum_probs=10.2
Q ss_pred HHHHHHhHHHH-HHhhhh
Q psy17239 16 LILIALTICWY-VYRQKE 32 (115)
Q Consensus 16 slvia~~GcWf-Ay~Qnk 32 (115)
+++..++|.+| ||.|-|
T Consensus 5 li~~tl~glf~aayqqyk 22 (27)
T d2e74g1 5 LVFATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHHHHHhc
Confidence 45555666665 577755
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=44.68 E-value=8.8 Score=26.57 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=20.7
Q ss_pred CCCchHHHHHHHHHHHHHhHHHHHHh
Q psy17239 4 STSHVKDYILGTLILIALTICWYVYR 29 (115)
Q Consensus 4 ~~n~~KD~~Lv~slvia~~GcWfAy~ 29 (115)
..+.||=++-+++++||++++.|.+.
T Consensus 71 p~gewK~v~g~~~~~i~~s~~i~~~~ 96 (144)
T d1v54d_ 71 STNEWKTVVGAAMFFIGFTALLLIWE 96 (144)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999888776653
No 3
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=40.64 E-value=45 Score=22.05 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 45 MEGLQRAELDLANLQKELERARQ 67 (115)
Q Consensus 45 le~Lq~AE~sL~dLQ~~Le~A~~ 67 (115)
+--||-||-+|.+...-|.+.||
T Consensus 16 ~s~lqtae~al~~~~~iL~r~re 38 (395)
T d1io1a_ 16 ISIAQTTEGALNEINNNLQRVRE 38 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777776666666554
No 4
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.02 E-value=49 Score=21.67 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 51 AELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 51 AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
-...+..|++++..+..+.+.+..++..|=+++..
T Consensus 89 Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~ 123 (129)
T d1ykhb1 89 QLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999988888766
No 5
>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=35.78 E-value=32 Score=23.09 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc-cccccHHHHHHH
Q psy17239 32 ESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKS-SSAFSDLEVCQL 110 (115)
Q Consensus 32 k~Sk~hl~kmmkDle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~~~~l~~-~~~~sdlEv~~L 110 (115)
|.--++|.|+|++.+- . .++.-|+.-.........--..+|+=...+. .++...+.. ...|.+.+.++|
T Consensus 45 rRQ~q~IGKLmR~~D~-e-------~i~~~l~~~~~~~~~~~~~~h~lE~wRdrLi--~~~~~al~e~~~~~P~~DrQ~L 114 (148)
T d2p0ta1 45 KRHILFIGKLMRDQDQ-E-------AILVLLDQLDASTRQYNERFHNLERWRDRLI--AGDDADLEKFVIEYPDADRQQL 114 (148)
T ss_dssp HHHHHHHHHHGGGSCH-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHSTTSCHHHH
T ss_pred HHHHHHHHHHHhhcCH-H-------HHHHHHHHHHcccHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHCcchHHHHH
Confidence 4445789999998753 2 3333333333333333333344554443322 222333333 334555566776
Q ss_pred HH
Q psy17239 111 KQ 112 (115)
Q Consensus 111 kq 112 (115)
++
T Consensus 115 Rq 116 (148)
T d2p0ta1 115 RS 116 (148)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 6
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.31 E-value=38 Score=19.67 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 44 DMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQ 84 (115)
Q Consensus 44 Dle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~ 84 (115)
..+.|.+|=.-+..||.+++....+.+....+.+.|.+++.
T Consensus 38 K~~iL~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 38 TLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35578888888888888888887777777777777777664
No 7
>d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB {Escherichia coli [TaxId: 562]}
Probab=27.66 E-value=23 Score=22.87 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=18.9
Q ss_pred CCCchHHHHHHHHHHHHHhHHHHHHhh
Q psy17239 4 STSHVKDYILGTLILIALTICWYVYRQ 30 (115)
Q Consensus 4 ~~n~~KD~~Lv~slvia~~GcWfAy~Q 30 (115)
+.+..+=+..++.++.+++|.++|++|
T Consensus 52 ~~~~~~~~~~~~~~l~~~~G~~~a~~h 78 (149)
T d2hi7b1 52 PKTPLRYVAMVIWLYSAFRGVQLTYEH 78 (149)
T ss_dssp SSSSCTHHHHHHTTHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566677777788888888765
No 8
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=25.93 E-value=23 Score=23.34 Aligned_cols=22 Identities=9% Similarity=0.012 Sum_probs=17.2
Q ss_pred HHHHHhHHHHHHhhhhhHHHHH
Q psy17239 17 ILIALTICWYVYRQKESSQQHL 38 (115)
Q Consensus 17 lvia~~GcWfAy~Qnk~Sk~hl 38 (115)
+.++++|+.++|..+|..|+.+
T Consensus 167 l~G~l~G~~~g~~~~~~~k~~~ 188 (189)
T d2nr9a1 167 ISGLIVGLIWGFIDSKLRKNSL 188 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccccc
Confidence 4566889999999888877654
No 9
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.70 E-value=62 Score=19.05 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17239 44 DMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85 (115)
Q Consensus 44 Dle~Lq~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~ 85 (115)
..+.|..|-.-+..||++++....+......+-..|.+++..
T Consensus 43 K~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 84 (88)
T d1nkpa_ 43 KVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688888888888888888777766666666666666643
No 10
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.08 E-value=53 Score=20.07 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=14.6
Q ss_pred HhhH-HHHHHHHHHHHHHHHHHHHHH
Q psy17239 43 KDME-GLQRAELDLANLQKELERARQ 67 (115)
Q Consensus 43 kDle-~Lq~AE~sL~dLQ~~Le~A~~ 67 (115)
.||| +|-+...++..||.+|.+.+.
T Consensus 29 ~diE~eLerCk~~irrLeqel~~ErF 54 (67)
T d1k1fa_ 29 GDIEQELERAKASIRRLEQEVNQERF 54 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 456666666666666665544
No 11
>d2a26a1 a.2.16.1 (A:1-47) Calcyclin-binding protein, CacyBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.58 E-value=67 Score=18.33 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy17239 71 NAASEKIKLERRLQE 85 (115)
Q Consensus 71 ~v~~EK~~LE~kl~~ 85 (115)
....||..||-++.+
T Consensus 28 ~Lt~Ek~kletEik~ 42 (47)
T d2a26a1 28 ALTAEKSKIETEIKN 42 (47)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345678888877776
No 12
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.37 E-value=85 Score=19.06 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17239 49 QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQGD 92 (115)
Q Consensus 49 q~AE~sL~dLQ~~Le~A~~e~~~v~~EK~~LE~kl~~~~~~~~~ 92 (115)
+..-..|..+|.++............++...+.-+.++....++
T Consensus 4 qe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d 47 (107)
T d1fxka_ 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADD 47 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 34444566666666666666666666666555555553334444
No 13
>d1lqla_ d.227.1.1 (A:) Hypothetical protein MPN625 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=20.52 E-value=25 Score=22.22 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=15.0
Q ss_pred HHHHHHHhHHHHHHhhhhhHH
Q psy17239 15 TLILIALTICWYVYRQKESSQ 35 (115)
Q Consensus 15 ~slvia~~GcWfAy~Qnk~Sk 35 (115)
=+++.|++||.-+..+.-..+
T Consensus 43 elllaaLa~C~~~~~~~~a~~ 63 (141)
T d1lqla_ 43 AALLSGLAACELATANLMAPA 63 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367889999998776654433
Done!