RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17239
(115 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.012
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 17/44 (38%)
Query: 75 EK--IK-LERRLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
EK +K L+ L+ + A D S+ A + +K +E
Sbjct: 18 EKQALKKLQASLKLY------ADD--SAPALA------IKATME 47
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 30.6 bits (69), Expect = 0.097
Identities = 11/88 (12%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 29 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQ-EHQ 87
+ ++ + + L + +L + E+E +E+E + + ++++Q +
Sbjct: 899 EKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQML 958
Query: 88 ALQGDASDLKSSSAFSDLEVCQLKQEIE 115
L+ + +++ LE +I+
Sbjct: 959 DLEEQLEEEEAARQKLQLEKVTADGKIK 986
Score = 28.6 bits (64), Expect = 0.47
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 29 RQKESSQQHLRRMMKDMEGL-QRAELDLANLQKELERARQEQENAASEKIKLERRLQE-- 85
++ K++ L + E ++ L+ L++ + ++ K KLE +
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLH 1073
Query: 86 --HQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
LQ ++LK+ A + E+ +E
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEEELQAALARLE 1105
Score = 28.3 bits (63), Expect = 0.62
Identities = 13/87 (14%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 29 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQA 88
++E Q L+ K M+ + +L+++LE ++ EK+ + ++++
Sbjct: 937 EEEEERSQQLQAEKKKMQQ------QMLDLEEQLEEEEAARQKLQLEKVTADGKIKK--- 987
Query: 89 LQGDASDLKSSSAFSDLEVCQLKQEIE 115
++ D ++ + E L++ +
Sbjct: 988 MEDDILIMEDQNNKLTKERKLLEERVS 1014
Score = 28.3 bits (63), Expect = 0.64
Identities = 12/94 (12%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 23 ICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE-QENAASEKIKLER 81
+ + +K+ ++ L M +E + L +K++++ + +E E+ ++
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 82 RLQEHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
E G ++ + + +L +E +
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK 1007
Score = 26.3 bits (58), Expect = 2.5
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 48 LQRAELDLANLQKELERARQEQENAASEKIKLERRLQE 85
++ E +++LQ++LE + + A +K L L+
Sbjct: 1118 IRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 29.8 bits (68), Expect = 0.17
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 27/93 (29%)
Query: 32 ESSQQHLRRMMKDMEGLQRAELDL--------------ANLQKELERARQEQENA----- 72
SQ+ L+ + ++ L L Q L+ R+E E A
Sbjct: 426 PDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYD 485
Query: 73 ---ASE----KI-KLERRLQEHQALQGDASDLK 97
A+E ++ KLE ++ A ++
Sbjct: 486 LNRAAELRYGELPKLEAEVEALSEKLRGARFVR 518
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.4 bits (66), Expect = 0.26
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 29 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE-HQ 87
+ + Q++ R + +E L + L + L K L ++ EK + ++ +
Sbjct: 1861 AKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLS--ISLVKSLTFEKERWLNTTKQFSK 1918
Query: 88 ALQGDASDLKSSSAF 102
Q + SS +
Sbjct: 1919 TSQELIGNCIISSIY 1933
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 28.9 bits (65), Expect = 0.33
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 29 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASE----KIKLERRL- 83
+ + L+ + +E ++ + L N +L+R EQ LE
Sbjct: 900 MMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYS 959
Query: 84 QEHQALQGDASDLKSS 99
E + L+ D L+ S
Sbjct: 960 TETEKLRSDVERLRMS 975
Score = 26.2 bits (58), Expect = 3.1
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 30 QKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQE-HQA 88
+ E + + R+ E + A + +LQ+E+ + R+E +EK + ++E
Sbjct: 961 ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK----KTIEEWADK 1016
Query: 89 LQGDASDLKSSSAFSDLEVCQLKQEIE 115
+ + L S + LK E E
Sbjct: 1017 YKHETEQLVSE---LKEQNTLLKTEKE 1040
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting),
transit peptide, F1FO ATP synthase, ATP phosphorylase;
3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Length = 168
Score = 28.8 bits (64), Expect = 0.33
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 52 ELDLANLQKELERARQEQENAASE--KIKLERRLQEHQALQ 90
LDL + LE+A+ E AA E + +++ R++ ++AL
Sbjct: 124 MLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALV 164
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Length = 490
Score = 28.9 bits (64), Expect = 0.35
Identities = 4/36 (11%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 14 GTLILIALTICWYVYRQ--KESSQQHLRRMMKDMEG 47
I++ + + + E Q + + + G
Sbjct: 450 AAGIVVGIAGGFSLLEVITIEYQQSGGQSALNQVLG 485
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.37
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 31 KESSQQHLRRMMKDMEGLQRAELDLANLQKELE---RARQEQENAASEKIKLERRLQEHQ 87
+E ++ L+ D + +K+LE + + EQ EK K+ R+ +
Sbjct: 91 REEQRKRLQE--LDAASKVMEQEWREKAKKDLEEWNQRQSEQV----EKNKINNRIADKA 144
Query: 88 ALQGDASDL 96
Q +D+
Sbjct: 145 FYQQPDADI 153
Score = 25.9 bits (56), Expect = 2.7
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 49 QRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQALQ 90
E + +E +R R ++ +AAS+ ++ E R + + L+
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE 121
Score = 24.3 bits (52), Expect = 9.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 61 ELERARQEQENAASEKIKLERRLQEHQA 88
+ +R QE E+ + + +RLQE A
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDA 103
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure
initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 28.5 bits (64), Expect = 0.39
Identities = 7/42 (16%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 48 LQRAELDLANLQKELERARQ-EQENAASEKIKLERRLQEHQA 88
+A + ++ L+R R+ ++ A+++ + + QA
Sbjct: 100 AAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQA 141
>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB:
1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*
Length = 146
Score = 28.3 bits (63), Expect = 0.42
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 51 AELDLANLQKELERARQEQENAASE--KIKLERRLQEHQALQ 90
LDL + LE+A+ E AA E + +++ R++ ++AL
Sbjct: 101 DMLDLGAAKANLEKAQSELLGAADEATRAEIQIRIEANEALV 142
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 27.5 bits (60), Expect = 1.1
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 29 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKLERRLQEHQA 88
Q+ +++ +R+ ++ G R E Q E E+AR+E + + +E
Sbjct: 668 SQEAAAKHEAQRLEQEARG--RLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAE 725
Query: 89 LQGDA 93
+ A
Sbjct: 726 AESRA 730
Score = 26.7 bits (58), Expect = 2.4
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 29 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAA-SEKIKLERRLQEHQ 87
+ E +++ L + ++ A + E AR E E + K+K + E +
Sbjct: 697 SEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETE 756
Query: 88 A 88
A
Sbjct: 757 A 757
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 27.0 bits (60), Expect = 1.5
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 54 DLANLQKELERARQEQENAASEKIKLERRLQEHQALQGDASDLKSSSAFSDLEV 107
DL N E + ++ E A + ++ +E++ L+ L + + D +
Sbjct: 20 DLKNTYTENQHLKERLEELAQLESEVADLKKENKDLK---ESLDITDSIRDYDP 70
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 26.8 bits (59), Expect = 1.8
Identities = 14/91 (15%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 29 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE--QENAASEKI--KLERRLQ 84
+++ ++ + ++ L+ E + +LQ L + +E +N + + ++ + Q
Sbjct: 1910 EKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ 1969
Query: 85 EHQALQGDASDLKSSSAFSDLEVCQLKQEIE 115
+ Q DA +L+ + E+ K +
Sbjct: 1970 AAEIKQKDARELQVQLDVRNKEIAVQKVKAY 2000
>2ksd_A Aerobic respiration control sensor protein ARCB; methods
development, histidine kinase receptor, membrane domain,
two-helical hairpin; NMR {Escherichia coli}
Length = 115
Score = 26.1 bits (57), Expect = 2.1
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 12 ILGTLILIALTICWYVY------RQKESSQQHLRRMMKDMEGLQRAELDL-ANLQKELER 64
++ ++ L W VY Q E S+Q L R+++ +E ++ +L L L+ + +
Sbjct: 55 VIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDLSLNVQLKDNIAQ 114
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 26.4 bits (59), Expect = 2.4
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 33 SSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQ--ENAAS---EKIKLERRLQEHQ 87
S+ LR L+ E L ++KE + A Q Q E AAS + +L ++++ +
Sbjct: 382 GSKVRLRSFTTPPN-LKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTK 440
Query: 88 A 88
Sbjct: 441 K 441
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 26.2 bits (58), Expect = 2.8
Identities = 9/91 (9%), Positives = 27/91 (29%), Gaps = 9/91 (9%)
Query: 29 RQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERAR-------QEQENAASEKIKLER 81
+ K + + + +E ++ DL ++ +L E+++ +
Sbjct: 922 QAKLKNLEAFDGECQSLE--GQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGV 979
Query: 82 RLQEHQALQGDASDLKSSSAFSDLEVCQLKQ 112
+ ++L+ DL
Sbjct: 980 KSSAETYKNTLLAELERLQKIEDLHHHHHHH 1010
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner
membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces
cerevisiae}
Length = 160
Score = 25.9 bits (57), Expect = 2.8
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 51 AELDLANLQKELERARQEQENA-ASEKIKLERRLQEHQALQ 90
N++ L A++ ++ A E + +++ + LQ
Sbjct: 116 ESFSQENIKNLLAEAKKNVSSSDAREAAEAAIQVEVLENLQ 156
>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP
synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A
{Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H*
3oeh_H* 3ofn_H* 3zry_H* 3oe7_H*
Length = 138
Score = 25.8 bits (57), Expect = 2.9
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 51 AELDLANLQKELERARQEQENA-ASEKIKLERRLQEHQALQ 90
N++ L A++ ++ A E + +++ + LQ
Sbjct: 94 ESFSQENIKNLLAEAKKNVSSSDAREAAEAAIQVEVLENLQ 134
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 26.0 bits (58), Expect = 3.6
Identities = 4/30 (13%), Positives = 14/30 (46%)
Query: 54 DLANLQKELERARQEQENAASEKIKLERRL 83
L ++++ R + + + + +R+L
Sbjct: 794 GLLDVEEWRRRQEKRLKELLALAERSQRKL 823
Score = 25.2 bits (56), Expect = 7.2
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 14/59 (23%)
Query: 44 DMEGLQRAELDLANLQKELERARQEQE-------------NAASEKIKLER-RLQEHQA 88
+EGL E +K L+ E A E ++ E RL+E+
Sbjct: 791 PLEGLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLE 849
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon
subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB:
2e5t_A 2e5u_A
Length = 133
Score = 25.4 bits (56), Expect = 4.3
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 51 AELDLANLQKELERARQEQENAASEKIKLERRLQEHQAL 89
++D+ + ERA + ++ + L +A+
Sbjct: 86 EDIDVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAM 124
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel,
membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP:
f.46.1.1 PDB: 2v4d_A 1t5e_A
Length = 369
Score = 25.7 bits (57), Expect = 4.4
Identities = 8/30 (26%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 48 LQRAELDLANLQKELERARQ-EQENAASEK 76
Q A+ +LA+ Q++ +R + + A S++
Sbjct: 83 YQSAQANLASTQEQAQRYKLLVADQAVSKQ 112
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A
{Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J
1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Length = 138
Score = 25.0 bits (55), Expect = 4.8
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 51 AELDLANLQKELERARQEQENAAS--EKIKLERRLQEHQA 88
+LD A + +A + ++ + + L + A
Sbjct: 87 QDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIA 126
>1z0p_A Hypothetical protein SPY1572; structural genomics, PSI, protein ST
initiative, midwest center for structural genomics,
MCSG, U function; 1.70A {Streptococcus pyogenes} SCOP:
a.2.18.1
Length = 84
Score = 24.6 bits (53), Expect = 5.5
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 39 RRMMKDMEGLQRAELDLANLQKELERARQEQ---ENAASEKIKLERRLQEHQALQGDASD 95
+ +KD E + ++ + L + ++ E A I+ E +L ++ L G +
Sbjct: 5 KEFLKDFEDWVKTQIQVNQLAMATSQEVAQEDGDERAKDAFIRYESKLDAYEFLLGKFDN 64
Query: 96 LKSSSAFSDL 105
K+ AF D+
Sbjct: 65 YKNGKAFHDI 74
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 25.2 bits (56), Expect = 5.6
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 35 QQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENAASEKIKL 79
H++R+ + L + L++E++ EQ+N +K+
Sbjct: 40 SAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAEQQNGV---LKV 81
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 7.4
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 1 MINSTSHVKDYILGTLILIALTICWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQ 59
M+ + D + + I + S Q LRR++K + + L L N+Q
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNI----KLRIHSIQAELRRLLKS-KPYENCLLVLLNVQ 254
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 24.8 bits (55), Expect = 8.5
Identities = 9/45 (20%), Positives = 24/45 (53%)
Query: 24 CWYVYRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE 68
C+ ++Q + + + M+ D E + A+ +L +++ E+ Q+
Sbjct: 51 CFTDWQQVQEDIETAQMMLDDPEMREMAQDELREAKEKSEQLEQQ 95
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 24.8 bits (55), Expect = 8.8
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 28 YRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQE 68
YR+ + ++ D E + A+ + L E +E
Sbjct: 51 YRKVLEDLEQAESLLDDPELKEMAKAEREALLARKEALEKE 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.127 0.340
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,584,534
Number of extensions: 78530
Number of successful extensions: 476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 179
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.4 bits)