RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17239
         (115 letters)



>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
           thermophilus [TaxId: 274]}
          Length = 387

 Score = 26.2 bits (57), Expect = 1.0
 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 13/83 (15%)

Query: 28  YRQKESSQQHLRRMMKDMEGLQRAELDLANLQKELERARQEQENA-------------AS 74
             +     + + ++  + E  +     L   Q  L+  R+E E A               
Sbjct: 288 EAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYG 347

Query: 75  EKIKLERRLQEHQALQGDASDLK 97
           E  KLE  ++        A  ++
Sbjct: 348 ELPKLEAEVEALSEKLRGARFVR 370


>d1z0pa1 a.2.18.1 (A:1-77) Hypothetical protein SPy1572
           {Streptococcus pyogenes [TaxId: 1314]}
          Length = 77

 Score = 24.5 bits (53), Expect = 2.0
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 42  MKDMEGLQRAELDLANLQKELERARQEQ---ENAASEKIKLERRLQEHQALQGDASDLKS 98
           +KD E   + ++ +  L     +   ++   E A    I+ E +L  ++ L G   + K+
Sbjct: 8   LKDFEDWVKTQIQVNQLAMATSQEVAQEDGDERAKDAFIRYESKLDAYEFLLGKFDNYKN 67

Query: 99  SSAFSDL 105
             AF D+
Sbjct: 68  GKAFHDI 74


>d2okqa1 d.58.4.18 (A:1-117) Hypothetical protein YbaA {Shigella
          flexneri [TaxId: 623]}
          Length = 117

 Score = 24.2 bits (53), Expect = 3.5
 Identities = 7/23 (30%), Positives = 9/23 (39%)

Query: 24 CWYVYRQKESSQQHLRRMMKDME 46
           W  Y  KE      ++MM D  
Sbjct: 69 SWIEYPSKEVRDAANQKMMSDPR 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.127    0.340 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 372,051
Number of extensions: 14043
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 30
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (21.9 bits)