BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1724
(473 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VTF9|UFD1_DROME Ubiquitin fusion degradation protein 1 homolog OS=Drosophila
melanogaster GN=Ufd1-like PE=2 SV=1
Length = 316
Score = 345 bits (886), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 177/285 (62%), Positives = 209/285 (73%), Gaps = 14/285 (4%)
Query: 196 FQF-GFNM-FPDIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICY 253
F F GFNM FP+ R F+ +YKCFSVSM PGNER DVE+GGKIIMPPSAL+ LTRLN+ Y
Sbjct: 2 FHFSGFNMMFPE-GRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEY 60
Query: 254 PMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFS 313
PMLFKLTN K R +H+GVLEFVADEGK YLP+WMM NLLL EG+++NIESVSLPVATFS
Sbjct: 61 PMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFS 120
Query: 314 KFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVTII 373
KFQP + DFLDITNPKAVLEN LRNFACLT GD+IAI YN K+YELCVLETKPGNAV+II
Sbjct: 121 KFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSII 180
Query: 374 ECDMNVDFAPPVGYTEPEKVKEKEEDNMIDPVDLMPEPSGFV---------AFHGTGNRL 424
ECDMNV+F PVGY + + + + E +G F G+G RL
Sbjct: 181 ECDMNVEFEAPVGYKDHSETQASGSGQQGAAGTVGGEIAGATNAILEEVVETFKGSGVRL 240
Query: 425 DGKRKKKDTVETGGTPTKREYQRGIPHYDYEPNTLVFLRNIKPAS 469
DGK+KK+ +ET K+ RG+P YD++ + F RNI+P S
Sbjct: 241 DGKKKKESQLET--PVVKKVLARGVPDYDFQFGLIRFDRNIRPIS 283
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 73/86 (84%), Gaps = 1/86 (1%)
Query: 1 MFPDIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTN 60
MFP+ R F+ +YKCFSVSM PGNER DVE+GGKIIMPPSAL+ LTRLN+ YPMLFKLTN
Sbjct: 10 MFPE-GRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEYPMLFKLTN 68
Query: 61 QKMGRITHSGVLEFVADEGKVYLPYW 86
K R +H+GVLEFVADEGK YLP+W
Sbjct: 69 VKKSRSSHAGVLEFVADEGKCYLPHW 94
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 52/62 (83%)
Query: 85 YWCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVL 144
Y CFSVSM PGNER DVE+GGKIIMPPSAL+ LTRLN+ YPMLFKLTN K R +H+GVL
Sbjct: 21 YKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEYPMLFKLTNVKKSRSSHAGVL 80
Query: 145 EL 146
E
Sbjct: 81 EF 82
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 141 SGVLELDGKRKKKDTVETGGTPTKREYQRGIPHYDYEPNTLVFLRNIKPAS 191
SGV LDGK+KK+ +ET K+ RG+P YD++ + F RNI+P S
Sbjct: 236 SGV-RLDGKKKKESQLET--PVVKKVLARGVPDYDFQFGLIRFDRNIRPIS 283
>sp|Q92890|UFD1_HUMAN Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens
GN=UFD1L PE=1 SV=3
Length = 307
Score = 332 bits (851), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 178/279 (63%), Positives = 212/279 (75%), Gaps = 13/279 (4%)
Query: 198 FGFNMFPD-IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNI 251
F FNMF IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 252 CYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVAT 311
YPMLFKLTN+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 121
Query: 312 FSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVT 371
+SKFQPQ+ DFLDITNPKAVLEN LRNFACLT+GD+IAINYN KIYEL V+ETKP AV+
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVS 181
Query: 372 IIECDMNVDFAPPVGYTEPEKVKEKEE--DNMIDPVDLMPEPSGFVAFHGTGNRLDGKRK 429
IIECDMNVDF P+GY EPE+ + EE + D E GF AF G+GNRLDGK+K
Sbjct: 182 IIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGE-LGFRAFSGSGNRLDGKKK 240
Query: 430 KKDTVETGGTPTK-REYQRGIPHYDYEPNTLVFLRNIKP 467
VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 241 ---GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 70/87 (80%), Gaps = 5/87 (5%)
Query: 5 IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLT 59
IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLT
Sbjct: 11 IPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLT 70
Query: 60 NQKMGRITHSGVLEFVADEGKVYLPYW 86
N+ R+TH GVLEFVADEG YLP+W
Sbjct: 71 NKNSDRMTHCGVLEFVADEGICYLPHW 97
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+TH GV
Sbjct: 23 YRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGV 82
Query: 144 LEL 146
LE
Sbjct: 83 LEF 85
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 146 LDGKRKKKDTVETGGTPTK-REYQRGIPHYDYEPNTLVFLRNIKP 189
LDGK+K VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 235 LDGKKK---GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
>sp|Q9ES53|UFD1_RAT Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus
GN=Ufd1l PE=1 SV=1
Length = 307
Score = 331 bits (849), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 178/279 (63%), Positives = 212/279 (75%), Gaps = 13/279 (4%)
Query: 198 FGFNMFPD-IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNI 251
F FNMF IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 252 CYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVAT 311
YPMLFKLTN+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 121
Query: 312 FSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVT 371
+SKFQPQ+ DFLDITNPKAVLEN LRNFACLT+GD+IAINYN KIYEL V+ETKP AV+
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVS 181
Query: 372 IIECDMNVDFAPPVGYTEPEKVKEKEE--DNMIDPVDLMPEPSGFVAFHGTGNRLDGKRK 429
IIECDMNVDF P+GY EPE+ + EE + D E GF AF G+GNRLDGK+K
Sbjct: 182 IIECDMNVDFDAPLGYKEPERPVQHEESIEGEADHSGYAGE-VGFRAFSGSGNRLDGKKK 240
Query: 430 KKDTVETGGTPTK-REYQRGIPHYDYEPNTLVFLRNIKP 467
VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 241 ---GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 66/79 (83%), Gaps = 1/79 (1%)
Query: 9 FNRSYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRIT 67
F+ Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 68 HSGVLEFVADEGKVYLPYW 86
H GVLEFVADEG YLP+W
Sbjct: 79 HCGVLEFVADEGICYLPHW 97
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+TH GV
Sbjct: 23 YRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGV 82
Query: 144 LEL 146
LE
Sbjct: 83 LEF 85
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 146 LDGKRKKKDTVETGGTPTK-REYQRGIPHYDYEPNTLVFLRNIKP 189
LDGK+K VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 235 LDGKKK---GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
>sp|P70362|UFD1_MOUSE Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus
GN=Ufd1l PE=1 SV=2
Length = 307
Score = 331 bits (849), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 178/279 (63%), Positives = 212/279 (75%), Gaps = 13/279 (4%)
Query: 198 FGFNMFPD-IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNI 251
F FNMF IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 252 CYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVAT 311
YPMLFKLTN+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 121
Query: 312 FSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVT 371
+SKFQPQ+ DFLDITNPKAVLEN LRNFACLT+GD+IAINYN KIYEL V+ETKP AV+
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVS 181
Query: 372 IIECDMNVDFAPPVGYTEPEKVKEKEE--DNMIDPVDLMPEPSGFVAFHGTGNRLDGKRK 429
IIECDMNVDF P+GY EPE+ + EE + D E GF AF G+GNRLDGK+K
Sbjct: 182 IIECDMNVDFDAPLGYKEPERPVQHEESIEGEADHSGYAGE-VGFRAFSGSGNRLDGKKK 240
Query: 430 KKDTVETGGTPTK-REYQRGIPHYDYEPNTLVFLRNIKP 467
VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 241 ---GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 66/79 (83%), Gaps = 1/79 (1%)
Query: 9 FNRSYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRIT 67
F+ Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 68 HSGVLEFVADEGKVYLPYW 86
H GVLEFVADEG YLP+W
Sbjct: 79 HCGVLEFVADEGICYLPHW 97
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+TH GV
Sbjct: 23 YRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGV 82
Query: 144 LEL 146
LE
Sbjct: 83 LEF 85
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 146 LDGKRKKKDTVETGGTPTK-REYQRGIPHYDYEPNTLVFLRNIKP 189
LDGK+K VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 235 LDGKKK---GVEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
>sp|P53044|UFD1_YEAST Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UFD1 PE=1 SV=1
Length = 361
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 98/193 (50%), Positives = 136/193 (70%), Gaps = 8/193 (4%)
Query: 205 DIPRPFNRSYKCFSVSMFPGNER---EDVERGGKIIMPPSALEQLTRLNICYPMLFKLTN 261
++P+ F ++C+ ++M N+R +D GGKI +PPSAL +L+ LNI YPMLFKLT
Sbjct: 16 NMPQTFEEFFRCYPIAMM--NDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTA 73
Query: 262 QKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCD 321
+ GR+TH GVLEF+A+EG+VYLP WMM L + G L+ I S +P+ F K +PQ+ D
Sbjct: 74 NETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVD 133
Query: 322 FLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKP---GNAVTIIECDMN 378
FLDI++PKAVLEN LRNF+ LT D+I I+YN K +++ +LE KP ++ +IE D+
Sbjct: 134 FLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLV 193
Query: 379 VDFAPPVGYTEPE 391
DFAPPVGY EP+
Sbjct: 194 TDFAPPVGYVEPD 206
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 79/122 (64%), Gaps = 10/122 (8%)
Query: 4 DIPRPFNRSYKCFSVSMFPGNER---EDVERGGKIIMPPSALEQLTRLNICYPMLFKLTN 60
++P+ F ++C+ ++M N+R +D GGKI +PPSAL +L+ LNI YPMLFKLT
Sbjct: 16 NMPQTFEEFFRCYPIAMM--NDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTA 73
Query: 61 QKMGRITHSGVLEFVADEGKVYLPYWCF-SVSMFPGN----EREDVERGGKIIMPPSALE 115
+ GR+TH GVLEF+A+EG+VYLP W ++ + PG+ DV G + + P +++
Sbjct: 74 NETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVD 133
Query: 116 QL 117
L
Sbjct: 134 FL 135
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 5/65 (7%)
Query: 85 YWCFSVSMFPGNER---EDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHS 141
+ C+ ++M N+R +D GGKI +PPSAL +L+ LNI YPMLFKLT + GR+TH
Sbjct: 25 FRCYPIAMM--NDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHG 82
Query: 142 GVLEL 146
GVLE
Sbjct: 83 GVLEF 87
>sp|O42915|UFD1_SCHPO Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ufd1 PE=2 SV=4
Length = 342
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 154/235 (65%), Gaps = 14/235 (5%)
Query: 205 DIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKM 264
++ + F+ Y+C+ V+M PG ER +V GGK+I+PPSALE+L+RLN+ YPMLF N+
Sbjct: 27 NVNQRFDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAA 86
Query: 265 GRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLD 324
+ TH GVLEF+A+EG+VYLPYWMM L L+ G+LV + + + ++ K QPQ+ +FLD
Sbjct: 87 EKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFLD 146
Query: 325 ITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNA---VTIIECDMNVDF 381
IT+ +AVLEN LRNF+ LT D+ I YN ++Y++ V++ +P ++ V+++E D+ VDF
Sbjct: 147 ITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVDF 206
Query: 382 APPVGYTEPEKVKEKEEDNMIDPVDLMPEPSGFVAF---------HGTGNRLDGK 427
PP+GY E +++ ++ N+ M G+ GTG +L+GK
Sbjct: 207 DPPIGYE--ESLQKNKQQNIAGVQGTMVTKIGYDELVRQGDSNLMKGTGTKLNGK 259
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 81/119 (68%), Gaps = 5/119 (4%)
Query: 4 DIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKM 63
++ + F+ Y+C+ V+M PG ER +V GGK+I+PPSALE+L+RLN+ YPMLF N+
Sbjct: 27 NVNQRFDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAA 86
Query: 64 GRITHSGVLEFVADEGKVYLPYWCF-SVSMFPGNE----REDVERGGKIIMPPSALEQL 117
+ TH GVLEF+A+EG+VYLPYW ++S+ PG+ D+ +G + + P ++ L
Sbjct: 87 EKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFL 145
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 45/62 (72%)
Query: 85 YWCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVL 144
Y C+ V+M PG ER +V GGK+I+PPSALE+L+RLN+ YPMLF N+ + TH GVL
Sbjct: 36 YRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAAEKKTHGGVL 95
Query: 145 EL 146
E
Sbjct: 96 EF 97
>sp|Q55BK0|UFD1_DICDI Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium
discoideum GN=ufd1 PE=3 SV=1
Length = 330
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/183 (53%), Positives = 132/183 (72%), Gaps = 1/183 (0%)
Query: 207 PRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGR 266
P + + +K F +S P E+ +E GGKI++PPSAL L+RLNI YPMLF+++N G+
Sbjct: 22 PGRYEQKFKAFPISFLP-KEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPISGK 80
Query: 267 ITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDIT 326
+H GVLEF+A+EG YLP WMM+NL L EGE ++I++ +L TF K QP+T +F+DI+
Sbjct: 81 KSHCGVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNFIDIS 140
Query: 327 NPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVTIIECDMNVDFAPPVG 386
NPKAVLEN LR FA LT D I I+YN+ Y L V+E KP NA++IIE D++VDFAPP+
Sbjct: 141 NPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAPPMD 200
Query: 387 YTE 389
E
Sbjct: 201 SKE 203
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 6 PRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGR 65
P + + +K F +S P E+ +E GGKI++PPSAL L+RLNI YPMLF+++N G+
Sbjct: 22 PGRYEQKFKAFPISFLP-KEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPISGK 80
Query: 66 ITHSGVLEFVADEGKVYLPYW 86
+H GVLEF+A+EG YLP W
Sbjct: 81 KSHCGVLEFIAEEGICYLPLW 101
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 79 GKVYLPYWCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRI 138
G+ + F +S P E+ +E GGKI++PPSAL L+RLNI YPMLF+++N G+
Sbjct: 23 GRYEQKFKAFPISFLP-KEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPISGKK 81
Query: 139 THSGVLEL 146
+H GVLE
Sbjct: 82 SHCGVLEF 89
>sp|Q19584|UFD1_CAEEL Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis
elegans GN=ufd-1 PE=2 SV=1
Length = 342
Score = 195 bits (496), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 111/266 (41%), Positives = 149/266 (56%), Gaps = 34/266 (12%)
Query: 228 EDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYW 287
++ GGKI++P SAL L + NI PMLFKLTN + R+TH GVLEF A EG+ LP W
Sbjct: 42 SEINYGGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLW 101
Query: 288 MMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDM 347
MM+ L LD+G+ + IES +LP ATF+K +P + +FL+ITNPKAVLE LR +ACLT D
Sbjct: 102 MMQQLGLDDGDTIRIESATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDR 161
Query: 348 IAINYNSKIYELCVLETKPGNAVTIIECDMNVDFAPPVGYTEPEKVKEKEEDNMIDPVDL 407
I +Y + E V++ KP N+V IIECD+N+DF PP GY E + ++ +
Sbjct: 162 IPTSYAGQTLEFLVVDLKPANSVCIIECDVNLDFDPPEGYVE----QPRQVTPAVTAKPP 217
Query: 408 MPEPSGFVA------------------FHGTGNRLDGKRKKKDTVE----TG-GTPTKRE 444
P+ S F+ F G G RLDGK+K +V TG T
Sbjct: 218 APDASAFIGAGQKAGGSGGTGQNATSVFGGAGRRLDGKKKPSSSVSLSDGTGVSTSNAAP 277
Query: 445 YQRGIP-------HYDYEPNTLVFLR 463
+P + DY+P + FLR
Sbjct: 278 VANDLPAIPPVVVNEDYKPGRVSFLR 303
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%)
Query: 27 EDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYW 86
++ GGKI++P SAL L + NI PMLFKLTN + R+TH GVLEF A EG+ LP W
Sbjct: 42 SEINYGGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLW 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,229,569
Number of Sequences: 539616
Number of extensions: 8796875
Number of successful extensions: 16667
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16612
Number of HSP's gapped (non-prelim): 33
length of query: 473
length of database: 191,569,459
effective HSP length: 121
effective length of query: 352
effective length of database: 126,275,923
effective search space: 44449124896
effective search space used: 44449124896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)