Query psy1724
Match_columns 473
No_of_seqs 324 out of 574
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 16:54:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zc1_A Ubiquitin fusion degrad 100.0 7.6E-77 2.6E-81 565.9 17.6 192 202-393 13-208 (208)
2 2yuj_A Ubiquitin fusion degrad 100.0 9.6E-74 3.3E-78 538.4 19.6 186 198-383 3-190 (190)
3 2yuj_A Ubiquitin fusion degrad 100.0 1.9E-48 6.6E-53 366.5 12.8 146 1-146 7-171 (190)
4 1zc1_A Ubiquitin fusion degrad 100.0 2.9E-48 1E-52 369.5 9.3 146 1-146 13-176 (208)
5 3qwz_A Transitional endoplasmi 99.3 1.9E-11 6.6E-16 116.7 15.8 145 233-382 39-188 (211)
6 1cz4_A VCP-like ATPase; double 99.3 1E-11 3.6E-16 116.0 13.2 143 233-382 21-173 (185)
7 3tiw_A Transitional endoplasmi 99.3 4.3E-11 1.5E-15 112.4 16.8 144 233-381 36-184 (187)
8 1wlf_A PEX1, peroxisome biogen 98.9 3.7E-09 1.3E-13 98.4 9.4 147 232-383 23-177 (179)
9 3cf2_A TER ATPase, transitiona 97.5 0.00073 2.5E-08 75.5 13.7 142 234-379 37-184 (806)
10 2jv2_A Putative uncharacterize 96.9 0.0031 1.1E-07 52.2 8.3 68 309-381 11-79 (83)
11 1ypw_A Transitional endoplasmi 96.9 0.0097 3.3E-07 66.0 14.6 137 234-374 37-178 (806)
12 3hu3_A Transitional endoplasmi 96.2 0.19 6.5E-06 52.7 18.0 143 234-381 37-184 (489)
13 3qwz_A Transitional endoplasmi 94.6 0.13 4.3E-06 49.1 9.2 98 32-133 39-158 (211)
14 3tiw_A Transitional endoplasmi 94.5 0.19 6.3E-06 47.1 9.9 98 32-133 36-155 (187)
15 1cz4_A VCP-like ATPase; double 93.7 0.19 6.6E-06 46.6 8.2 94 32-132 21-137 (185)
16 1yfb_A Transition state regula 88.3 0.99 3.4E-05 34.9 5.9 39 277-319 19-57 (59)
17 2glw_A PHS018, 92AA long hypot 86.5 1.7 5.8E-05 36.2 6.7 68 278-352 13-84 (92)
18 1cr5_A SEC18P (residues 22 - 2 83.2 4.4 0.00015 37.5 8.7 88 278-365 54-154 (189)
19 1qcs_A N-ethylmaleimide sensit 80.3 4.6 0.00016 37.9 7.8 88 278-365 60-157 (211)
20 2l66_A SSO7C4, transcriptional 80.0 1.2 4E-05 33.2 2.8 38 277-318 9-46 (53)
21 2glw_A PHS018, 92AA long hypot 79.9 4.5 0.00015 33.6 6.7 74 228-304 9-84 (92)
22 1wlf_A PEX1, peroxisome biogen 78.1 3.1 0.00011 38.2 5.8 97 31-132 23-143 (179)
23 1yfb_A Transition state regula 69.9 3.8 0.00013 31.5 3.5 30 75-104 18-47 (59)
24 2l66_A SSO7C4, transcriptional 68.5 3.8 0.00013 30.4 3.1 29 76-104 9-37 (53)
25 3cf2_A TER ATPase, transitiona 66.0 4.5 0.00015 45.4 4.4 85 278-375 35-119 (806)
26 3hu3_A Transitional endoplasmi 54.5 7.5 0.00025 40.7 3.5 85 251-352 20-104 (489)
27 1mvf_D MAZE protein, PEMI-like 48.6 22 0.00076 28.1 4.6 37 279-319 12-48 (82)
28 2oyn_A Hypothetical protein MJ 46.7 15 0.0005 33.4 3.6 32 267-305 101-133 (146)
29 2w1t_A Spovt, stage V sporulat 44.2 16 0.00056 33.9 3.6 41 276-319 10-50 (178)
30 3cgm_A SLYD, peptidyl-prolyl C 37.2 1.7E+02 0.0058 26.0 9.1 92 273-386 27-122 (158)
31 1eik_A RNA polymerase subunit 36.1 44 0.0015 27.2 4.5 31 286-316 43-73 (77)
32 1s3s_G P47 protein; AAA ATPase 35.7 8.2 0.00028 33.5 0.1 17 412-428 5-21 (127)
33 1ypw_A Transitional endoplasmi 32.1 23 0.0008 39.2 3.1 87 250-353 19-105 (806)
34 1hmj_A RPB5, protein (subunit 29.7 42 0.0015 27.4 3.4 30 287-316 42-71 (78)
35 1a62_A RHO; transcription term 28.8 40 0.0014 29.5 3.4 43 267-310 49-106 (130)
36 2oyn_A Hypothetical protein MJ 28.7 42 0.0014 30.4 3.6 29 69-104 105-133 (146)
37 2ki8_A Tungsten formylmethanof 28.5 36 0.0012 29.8 3.1 29 278-306 51-79 (146)
38 3o27_A Putative uncharacterize 27.3 50 0.0017 26.4 3.3 27 278-304 23-49 (68)
39 2fhd_A RAD9 homolog, DNA repai 25.7 23 0.00079 32.3 1.3 27 288-316 58-84 (153)
40 2k8i_A SLYD, peptidyl-prolyl C 25.6 1.9E+02 0.0065 26.0 7.5 92 273-386 32-126 (171)
41 2w1t_A Spovt, stage V sporulat 24.8 52 0.0018 30.6 3.5 30 75-104 10-39 (178)
42 1yle_A Arginine N-succinyltran 22.8 72 0.0025 32.4 4.4 44 257-303 292-338 (342)
43 2k52_A Uncharacterized protein 22.7 1.1E+02 0.0038 23.6 4.7 54 292-351 1-55 (80)
44 2kfw_A FKBP-type peptidyl-prol 22.6 96 0.0033 28.8 5.0 91 274-386 33-126 (196)
45 2ln7_A LPXTG-SITE transpeptida 22.1 88 0.003 27.3 4.4 28 337-364 71-98 (147)
46 4ayb_H DNA-directed RNA polyme 20.8 1E+02 0.0036 25.2 4.2 30 287-316 50-79 (84)
47 3k3s_A Altronate hydrolase; st 20.5 35 0.0012 29.3 1.3 32 284-315 17-48 (105)
48 3ttz_A DNA gyrase subunit B; p 20.5 97 0.0033 28.6 4.5 48 306-353 133-181 (198)
49 4duh_A DNA gyrase subunit B; s 20.4 94 0.0032 29.2 4.5 48 306-353 160-208 (220)
No 1
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-77 Score=565.86 Aligned_cols=192 Identities=51% Similarity=0.967 Sum_probs=186.8
Q ss_pred CCCCCCCCCccceEEeeeeccCCC-CCCCCCCCCeEeeCHHHHHHHHhCCCCCceeEEEEeCCCCceEEEEEEeeeeCCC
Q psy1724 202 MFPDIPRPFNRSYKCFSVSMFPGN-EREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEFVADEG 280 (473)
Q Consensus 202 ~~~~~~~~f~~~yrcyp~s~~~~~-~r~~~~~GdKIiLPpSaL~~L~~~~i~~Pm~F~L~n~~~~r~th~GVLEFsA~EG 280 (473)
.|++.+++|+++|||||+||++++ +|+++++||||+||||||++|++++++|||+|+|+|..++++||||||||+|+||
T Consensus 13 ~~~~~~~~f~~~~rc~~~~~~p~~~~r~~~~~GdKIiLP~SaL~~L~~~~i~~Pm~F~l~n~~~~~~th~GVlEF~A~EG 92 (208)
T 1zc1_A 13 GFVNMPQTFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEG 92 (208)
T ss_dssp TCCCCCEEEEEEEEEEEGGGSCTTTSCHHHHHSSEEEECHHHHHHHHHTTCCSSCCEEEECTTTCCEEEEEEEEECCSSC
T ss_pred cCCcccccccceEEEEEEEeccCcccccccCCCCeEECCHHHHHHHHHCCCCcCEEEEEEeCCCCCEEEEEEEEEEcCCC
Confidence 455567899999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred cEEcCHHHHhhcCCCCCCeEEEEEeecCCceEEEEEeCccCcCCCCCcHHHHHHhcccceecccCCEEEEEECCEEEEEE
Q psy1724 281 KVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELC 360 (473)
Q Consensus 281 ~v~LP~WMm~~L~l~egd~V~I~~v~LPkGtfvkLqP~s~~FldIsnpKavLE~~LRnystLT~GD~I~I~yn~~~Y~l~ 360 (473)
+||||+|||++|++++||.|+|++++||||||||||||+++|++|+|||||||++||||+|||+||+|.|+||++.|+|+
T Consensus 93 ~v~lP~wmm~~L~l~~gd~V~i~~~~LPkgt~vklqP~~~~Fldi~npKavLE~~LRnfstLT~Gd~I~i~~~~~~y~l~ 172 (208)
T 1zc1_A 93 RVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIK 172 (208)
T ss_dssp EEEECHHHHHHHTCCTTCEEEEEEEECCCCSEEEEECCHHHHHTSSCHHHHHHHHHHHCSCEESSSEEEEEETTEEEEEE
T ss_pred eEEcCHHHHHhcCCCCCCEEEEEEeEcCCCCEEEEeECccccccccCHHHHHHHHhhcCccccCCCEEEEEeCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC---eEEEEccceEEEecCCCCCCCCCcc
Q psy1724 361 VLETKPGN---AVTIIECDMNVDFAPPVGYTEPEKV 393 (473)
Q Consensus 361 V~e~kP~~---aVsIIdTDleVDf~pP~~y~ep~~~ 393 (473)
|+|++|++ |||||||||+|||+||+||+||+++
T Consensus 173 V~e~kP~~~~~aV~IidTDleVDf~~p~~y~ep~~~ 208 (208)
T 1zc1_A 173 ILEVKPESSSKSICVIETDLVTDFAPPVGYVEPDYK 208 (208)
T ss_dssp EEEEECSSTTCEECCSSSCSEEEECCCCCCCCCCCC
T ss_pred EEEEcCCCCCceEEEEeCceEEEecCCCCCcCCCCC
Confidence 99999997 9999999999999999999999863
No 2
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=9.6e-74 Score=538.38 Aligned_cols=186 Identities=72% Similarity=1.159 Sum_probs=180.9
Q ss_pred cccCCCCCCCCC-CccceEEeeeeccCC-CCCCCCCCCCeEeeCHHHHHHHHhCCCCCceeEEEEeCCCCceEEEEEEee
Q psy1724 198 FGFNMFPDIPRP-FNRSYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEF 275 (473)
Q Consensus 198 f~~~~~~~~~~~-f~~~yrcyp~s~~~~-~~r~~~~~GdKIiLPpSaL~~L~~~~i~~Pm~F~L~n~~~~r~th~GVLEF 275 (473)
|+|++|++.+|+ |+++|||||+||++| ++|+++++||||+||||||++|++++++|||+|+|+|..++|+||||||||
T Consensus 3 ~~~~~~~~~~~~~f~~~~~cy~~s~~~~~~~r~~~~~GdKI~LP~SaL~~L~~~~i~~Pm~F~l~n~~~~r~th~GVlEF 82 (190)
T 2yuj_A 3 SGSSGIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEF 82 (190)
T ss_dssp SCCSSCCCCCSSSCEEEEEEECSTTSSSSSCCSTTTTTTEEECCHHHHHHHHHTTCCSSCEEEEEETTTTEEEEEEEEEC
T ss_pred cccCCCCCCCCccccceEEEEehhHcCCcccccccCCCCeEECcHHHHHHHHHCCCCcCeEEEEecCCCCceEEEEEEEE
Confidence 457888877777 999999999999998 789999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEcCHHHHhhcCCCCCCeEEEEEeecCCceEEEEEeCccCcCCCCCcHHHHHHhcccceecccCCEEEEEECCE
Q psy1724 276 VADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSK 355 (473)
Q Consensus 276 sA~EG~v~LP~WMm~~L~l~egd~V~I~~v~LPkGtfvkLqP~s~~FldIsnpKavLE~~LRnystLT~GD~I~I~yn~~ 355 (473)
+|+||+||||+|||++|++++||.|+|++++||||||||||||+++|++|+|||||||++||||+|||+||+|.|+||++
T Consensus 83 sA~EG~i~lP~wmm~~L~l~~gd~V~v~~~~LPkgt~vklqP~~~~Fl~i~npKavLE~~LrnfstLT~Gd~I~I~~~~~ 162 (190)
T 2yuj_A 83 VADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEK 162 (190)
T ss_dssp CCBTTBEECCSHHHHHHTCCTTEEEEEEEECCCCCSEEEEEESSHHHHHSSCHHHHHHHHHTTCCEECTTCEEEEESSSC
T ss_pred ecCCCeEEeCHHHHHhcCCCCCCEEEEEEeecCCCcEEEEEECCccccccccHHHHHHHHHhcCcccccCCEEEEEeCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEecCCCeEEEEccceEEEecC
Q psy1724 356 IYELCVLETKPGNAVTIIECDMNVDFAP 383 (473)
Q Consensus 356 ~Y~l~V~e~kP~~aVsIIdTDleVDf~p 383 (473)
.|+|+|+|++|++|||||||||+|||+|
T Consensus 163 ~y~l~V~e~kP~~aV~IidTDl~vDf~p 190 (190)
T 2yuj_A 163 IYELRVMETKPDKAVSIIECDMNVDFDA 190 (190)
T ss_dssp EEEEEEEEESSSSSEECSSCCCEEEECC
T ss_pred EEEEEEEEEcCCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999986
No 3
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.9e-48 Score=366.54 Aligned_cols=146 Identities=47% Similarity=0.735 Sum_probs=136.3
Q ss_pred CCCCCCcc-cccceeeeeeeccCC-CCCCCCCCCCeeecCHHHHHHHHhCCCCCceeEEEEeCCCCCeEEEEEeeeEecC
Q psy1724 1 MFPDIPRP-FNRSYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEFVADE 78 (473)
Q Consensus 1 ~~~~~~~~-f~~~y~cy~~s~~~~-~~~~~~~~GdKIiLP~SaL~~L~~~~i~~PmlF~l~n~~~~~~th~GVLEF~AeE 78 (473)
|||+++++ |+++|||||+||++| ++|.++++||||+||||||++|++++++|||+|+|+|.++++.||||||||+|+|
T Consensus 7 ~~~~~~~~~f~~~~~cy~~s~~~~~~~r~~~~~GdKI~LP~SaL~~L~~~~i~~Pm~F~l~n~~~~r~th~GVlEFsA~E 86 (190)
T 2yuj_A 7 GIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADE 86 (190)
T ss_dssp SCCCCCSSSCEEEEEEECSTTSSSSSCCSTTTTTTEEECCHHHHHHHHHTTCCSSCEEEEEETTTTEEEEEEEEECCCBT
T ss_pred CCCCCCCccccceEEEEehhHcCCcccccccCCCCeEECcHHHHHHHHHCCCCcCeEEEEecCCCCceEEEEEEEEecCC
Confidence 68888888 999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred CcEeccHhhHhhcCCCCCCcEEEEEeee-----------------ccCCHHHHHhhcccccccccceeecccccccccCC
Q psy1724 79 GKVYLPYWCFSVSMFPGNEREDVERGGK-----------------IIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHS 141 (473)
Q Consensus 79 G~v~LP~wmm~nL~l~~~~~v~ie~~~l-----------------I~n~KavLE~~Lr~~~cLt~g~~~~~~~~~~~~~~ 141 (473)
|+|+||+|||++|++++|+.|+|+++++ |+|||||||+.||+|+|||+|++++..++...+..
T Consensus 87 G~i~lP~wmm~~L~l~~gd~V~v~~~~LPkgt~vklqP~~~~Fl~i~npKavLE~~LrnfstLT~Gd~I~I~~~~~~y~l 166 (190)
T 2yuj_A 87 GICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYEL 166 (190)
T ss_dssp TBEECCSHHHHHHTCCTTEEEEEEEECCCCCSEEEEEESSHHHHHSSCHHHHHHHHHTTCCEECTTCEEEEESSSCEEEE
T ss_pred CeEEeCHHHHHhcCCCCCCEEEEEEeecCCCcEEEEEECCccccccccHHHHHHHHHhcCcccccCCEEEEEeCCEEEEE
Confidence 9999999999999999999999999976 99999999999999999999999999877665555
Q ss_pred Ccccc
Q psy1724 142 GVLEL 146 (473)
Q Consensus 142 ~~~~l 146 (473)
.+.++
T Consensus 167 ~V~e~ 171 (190)
T 2yuj_A 167 RVMET 171 (190)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55443
No 4
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-48 Score=369.54 Aligned_cols=146 Identities=36% Similarity=0.641 Sum_probs=136.6
Q ss_pred CCCCCCcccccceeeeeeeccCCC-CCCCCCCCCeeecCHHHHHHHHhCCCCCceeEEEEeCCCCCeEEEEEeeeEecCC
Q psy1724 1 MFPDIPRPFNRSYKCFSVSMFPGN-EREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEFVADEG 79 (473)
Q Consensus 1 ~~~~~~~~f~~~y~cy~~s~~~~~-~~~~~~~GdKIiLP~SaL~~L~~~~i~~PmlF~l~n~~~~~~th~GVLEF~AeEG 79 (473)
+|++.+++|+++|||||+||++|+ +|+++++||||+||||||++|+++|++|||+|+|+|..++++||||||||+|+||
T Consensus 13 ~~~~~~~~f~~~~rc~~~~~~p~~~~r~~~~~GdKIiLP~SaL~~L~~~~i~~Pm~F~l~n~~~~~~th~GVlEF~A~EG 92 (208)
T 1zc1_A 13 GFVNMPQTFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEG 92 (208)
T ss_dssp TCCCCCEEEEEEEEEEEGGGSCTTTSCHHHHHSSEEEECHHHHHHHHHTTCCSSCCEEEECTTTCCEEEEEEEEECCSSC
T ss_pred cCCcccccccceEEEEEEEeccCcccccccCCCCeEECCHHHHHHHHHCCCCcCEEEEEEeCCCCCEEEEEEEEEEcCCC
Confidence 466778999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred cEeccHhhHhhcCCCCCCcEEEEEeee-----------------ccCCHHHHHhhcccccccccceeecccccccccCCC
Q psy1724 80 KVYLPYWCFSVSMFPGNEREDVERGGK-----------------IIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSG 142 (473)
Q Consensus 80 ~v~LP~wmm~nL~l~~~~~v~ie~~~l-----------------I~n~KavLE~~Lr~~~cLt~g~~~~~~~~~~~~~~~ 142 (473)
+|+||+|||++|++++|+.|+|++++| |+|||||||++||+|+|||+|++|...++.......
T Consensus 93 ~v~lP~wmm~~L~l~~gd~V~i~~~~LPkgt~vklqP~~~~Fldi~npKavLE~~LRnfstLT~Gd~I~i~~~~~~y~l~ 172 (208)
T 1zc1_A 93 RVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIK 172 (208)
T ss_dssp EEEECHHHHHHHTCCTTCEEEEEEEECCCCSEEEEECCHHHHHTSSCHHHHHHHHHHHCSCEESSSEEEEEETTEEEEEE
T ss_pred eEEcCHHHHHhcCCCCCCEEEEEEeEcCCCCEEEEeECccccccccCHHHHHHHHhhcCccccCCCEEEEEeCCEEEEEE
Confidence 999999999999999999999999977 999999999999999999999999998776655555
Q ss_pred cccc
Q psy1724 143 VLEL 146 (473)
Q Consensus 143 ~~~l 146 (473)
+.++
T Consensus 173 V~e~ 176 (208)
T 1zc1_A 173 ILEV 176 (208)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 5
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=99.33 E-value=1.9e-11 Score=116.73 Aligned_cols=145 Identities=16% Similarity=0.197 Sum_probs=120.8
Q ss_pred CCeEeeCHHHHHHHHhCCCCCceeEEEEeCCCCceEEEEEEee-eeCCCcEEcCHHHHhhcCCCCCCeEEEEEe-ecCCc
Q psy1724 233 GGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEF-VADEGKVYLPYWMMRNLLLDEGELVNIESV-SLPVA 310 (473)
Q Consensus 233 GdKIiLPpSaL~~L~~~~i~~Pm~F~L~n~~~~r~th~GVLEF-sA~EG~v~LP~WMm~~L~l~egd~V~I~~v-~LPkG 310 (473)
.+.+.|+|+++++|.- ..==+.+|+.. ..+.|+|-|+.- ..++|.|.|..|+++||++..||.|.|+.+ .++.|
T Consensus 39 rgivrl~p~~m~~Lgl---~~GD~V~I~Gk-r~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A 114 (211)
T 3qwz_A 39 NSVVSLSQPKMDELQL---FRGDTVLLKGX-KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYG 114 (211)
T ss_dssp TTEEEECHHHHHHHTC---CBTCEEEEECS-TTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCCBC
T ss_pred CcEEEECHHHHHHcCC---CCCCEEEEeCC-CCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCc
Confidence 6789999999998843 22225777753 345899999974 456899999999999999999999999999 89999
Q ss_pred eEEEEEeCccCcCCCCC--cHHHHHHhcc-cceecccCCEEEEEECCEEEEEEEEEecCCCeEEEEccceEEEec
Q psy1724 311 TFSKFQPQTCDFLDITN--PKAVLENCLR-NFACLTSGDMIAINYNSKIYELCVLETKPGNAVTIIECDMNVDFA 382 (473)
Q Consensus 311 tfvkLqP~s~~FldIsn--pKavLE~~LR-nystLT~GD~I~I~yn~~~Y~l~V~e~kP~~aVsIIdTDleVDf~ 382 (473)
+.|.|.|.+..+-.++. ....|...|. +|-.+++||+|.|.+.++..+|.|++++|+ .+|+|..|-+|++.
T Consensus 115 ~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~t~P~-g~viV~~~T~I~~~ 188 (211)
T 3qwz_A 115 KRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPS-PYCIVAPDTVIHCE 188 (211)
T ss_dssp SEEEEEEBGGGCTTCCSCHHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEEEEESS-SEEEECTTCEEECC
T ss_pred eEEEEeccCcchhccCchhHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEEeecCC-CCEEECCCcEEEEc
Confidence 99999998655543543 3677888887 489999999999999999999999999997 57888888888884
No 6
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.33 E-value=1e-11 Score=116.05 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=118.6
Q ss_pred CCeEeeCHHHHHHHHhCCCCCceeEEEEeCCCCceEEEEEEe-eeeC--CCcEEcCHHHHhhcCCCCCCeEEEEEeecCC
Q psy1724 233 GGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLE-FVAD--EGKVYLPYWMMRNLLLDEGELVNIESVSLPV 309 (473)
Q Consensus 233 GdKIiLPpSaL~~L~~~~i~~Pm~F~L~n~~~~r~th~GVLE-FsA~--EG~v~LP~WMm~~L~l~egd~V~I~~v~LPk 309 (473)
-+.+.|+|++|++|. +..==+.+|+ ..|.|+|-|+. +..+ .|.|-|..|+++|+++..||.|.|+.+.++.
T Consensus 21 r~ivrl~p~~m~~Lg---l~~GD~V~I~---G~r~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD~V~V~~~~~~~ 94 (185)
T 1cz4_A 21 MSRVRLDESSRRLLD---AEIGDVVEIE---KVRKTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDKVKVRKVRTEI 94 (185)
T ss_dssp SSEEEECHHHHHTTC---CCTTCEEEEE---SSSEEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTCEEEEEEECCCB
T ss_pred CCEEEECHHHHHHcC---CCCCCEEEEE---cCCeEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCCEEEEEECCCCC
Confidence 357999999999885 3222235665 35789999996 3444 6899999999999999999999999999999
Q ss_pred ceEEEEEeCc---cCcCCCCCcHHHHHHhcccceecccCCEEEEEE---CCE-EEEEEEEEecCCCeEEEEccceEEEec
Q psy1724 310 ATFSKFQPQT---CDFLDITNPKAVLENCLRNFACLTSGDMIAINY---NSK-IYELCVLETKPGNAVTIIECDMNVDFA 382 (473)
Q Consensus 310 GtfvkLqP~s---~~FldIsnpKavLE~~LRnystLT~GD~I~I~y---n~~-~Y~l~V~e~kP~~aVsIIdTDleVDf~ 382 (473)
|+.|.|.|.+ ..+.-..+....|...|+++. |++||+|.+.+ .++ ...|.|++++|+.++|+|..|-+|++.
T Consensus 95 A~~V~l~P~~~~~~~~~~~~~~~~~l~~~l~~rp-v~~Gd~v~v~~~~~~g~~~~~f~Vv~t~P~~~~v~Vt~~T~I~i~ 173 (185)
T 1cz4_A 95 AKKVTLAPIIRKDQRLKFGEGIEEYVQRALIRRP-MLEQDNISVPGLTLAGQTGLLFKVVKTLPSKVPVEIGEETKIEIR 173 (185)
T ss_dssp CSEEEEEEECSTTCCSCCCSSHHHHHHHHHTTCE-ECTTCEECCSSCCCSSCCCCEEEEEEESSSSSCEECCTTCEEEEC
T ss_pred ccEEEEecccccccccccccchHHHHHHHHCCCc-ccCCCEEEEeeeccCCCeEEEEEEEEEcCCCceEEEcCCeEEEEC
Confidence 9999999985 444323677889999999974 99999999986 667 899999999998878899888888885
No 7
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=99.32 E-value=4.3e-11 Score=112.40 Aligned_cols=144 Identities=16% Similarity=0.199 Sum_probs=114.5
Q ss_pred CCeEeeCHHHHHHHHhCCCCCceeEEEEeCCCCceEEEEEEee-eeCCCcEEcCHHHHhhcCCCCCCeEEEEEe-ecCCc
Q psy1724 233 GGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEF-VADEGKVYLPYWMMRNLLLDEGELVNIESV-SLPVA 310 (473)
Q Consensus 233 GdKIiLPpSaL~~L~~~~i~~Pm~F~L~n~~~~r~th~GVLEF-sA~EG~v~LP~WMm~~L~l~egd~V~I~~v-~LPkG 310 (473)
.+.+.|+|+++++|.- ..==+.+|+.. ..+.|+|-|+.- ..++|.|.|..|+++||++..||.|.|+.+ .++.|
T Consensus 36 ~givrl~p~~m~~Lgl---~~GD~V~I~Gk-r~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A 111 (187)
T 3tiw_A 36 NSVVSLSQPKMDELQL---FRGDTVLLKGK-KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYG 111 (187)
T ss_dssp TTEEEECHHHHHHHTC---CTTCEEEEECS-TTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCEEC
T ss_pred CcEEEECHHHHHHcCC---CCCCEEEEECC-CCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCc
Confidence 6789999999999853 22224677753 345899999975 456899999999999999999999999999 89999
Q ss_pred eEEEEEeCccCcCCCCC--cHHHHHHhccc-ceecccCCEEEEEECCEEEEEEEEEecCCCeEEEEccceEEEe
Q psy1724 311 TFSKFQPQTCDFLDITN--PKAVLENCLRN-FACLTSGDMIAINYNSKIYELCVLETKPGNAVTIIECDMNVDF 381 (473)
Q Consensus 311 tfvkLqP~s~~FldIsn--pKavLE~~LRn-ystLT~GD~I~I~yn~~~Y~l~V~e~kP~~aVsIIdTDleVDf 381 (473)
+.|.|.|.+...-.++. ....|...|.. |-.+++||+|.|.+.++..+|.|++++|+ .+|+|..|-+|..
T Consensus 112 ~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f~Vv~t~P~-~~v~V~~~T~I~~ 184 (187)
T 3tiw_A 112 KRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS-PYCIVAPDTVIHC 184 (187)
T ss_dssp SEEEEEECCCC-----CCHHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEEEEEEEESS-SEEECCTTCEEEC
T ss_pred eEEEEeccccchhhccchhHHHHHHHHhccCCceeeCCCEEEEccCCCEEEEEEEEecCC-CCEEECCCcEEEe
Confidence 99999998644323432 36778888884 99999999999999999999999999998 5666765555544
No 8
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=98.90 E-value=3.7e-09 Score=98.37 Aligned_cols=147 Identities=14% Similarity=0.139 Sum_probs=120.1
Q ss_pred CCCeEeeCHHHHHHHHhCCCCCceeEEEEeCCCCceEEEEEEeeee----CCCcEEcCHHHHhhcCCCCCCeEEEEE-ee
Q psy1724 232 RGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEFVA----DEGKVYLPYWMMRNLLLDEGELVNIES-VS 306 (473)
Q Consensus 232 ~GdKIiLPpSaL~~L~~~~i~~Pm~F~L~n~~~~r~th~GVLEFsA----~EG~v~LP~WMm~~L~l~egd~V~I~~-v~ 306 (473)
..+-+-||++++++|. +..=-.-+|+-. .++.++|...+.. ..+.|-|..-+.+|||+.+||.|.|+- ++
T Consensus 23 ~~~~vrL~~~~~~~L~---~~~gd~VeI~g~--~~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd~V~V~~~~~ 97 (179)
T 1wlf_A 23 RDCFLHLPRRLVAQLH---LLQNQAIEVASD--HQPTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGDQVFLRPCSH 97 (179)
T ss_dssp SSSCEEECHHHHHHTT---CCTTCCEEEESS--SCCEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTCEEEEEECSC
T ss_pred CCcEEECCHHHHHHcC---CCCCcEEEEEeC--CeeEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCCEEEEEECCC
Confidence 4458999999999875 233346677643 3577888888765 478999999999999999999999998 79
Q ss_pred cCCceEEEEEeCccCcCCC-CCcHHHHHHhccc-ceecccCCEEEEEECC-EEEEEEEEEecCCCeEEEEccceEEEecC
Q psy1724 307 LPVATFSKFQPQTCDFLDI-TNPKAVLENCLRN-FACLTSGDMIAINYNS-KIYELCVLETKPGNAVTIIECDMNVDFAP 383 (473)
Q Consensus 307 LPkGtfvkLqP~s~~FldI-snpKavLE~~LRn-ystLT~GD~I~I~yn~-~~Y~l~V~e~kP~~aVsIIdTDleVDf~p 383 (473)
.+.|+-|.|.|.+.|-++| .+.-..||..|.+ +-.+++||+|.++..+ ....|.|+++.|...+++|..|-+|.++|
T Consensus 98 ~~~A~~V~laP~~~dD~ei~e~~a~~le~~Ll~QiR~v~~G~~i~v~~~g~~~i~f~V~~~~P~~~~v~It~~TeI~v~p 177 (179)
T 1wlf_A 98 VVSCQQVEVEPLSADDWEILELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGRLETNTKLLIQP 177 (179)
T ss_dssp CEECSEEEEEESSHHHHHHHHHSCSSHHHHHHHHCCEECTTCEEEEESSSSCEEEEEEEEEESCCSSEECCTTCEEEECC
T ss_pred CccceEEEEEcCCcCCeEEehhHHHHHHHHHhcCceeccCCCEEEEEecCCeEEEEEEEEeeCCCCeEEECCCcEEEEec
Confidence 9999999999998664444 4556678888875 8899999999999766 88999999999976788998888888864
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.51 E-value=0.00073 Score=75.49 Aligned_cols=142 Identities=15% Similarity=0.195 Sum_probs=100.5
Q ss_pred CeEeeCHHHHHHHHhCCCCCceeEEEEeCCCCceEEEEEEe-eeeCCCcEEcCHHHHhhcCCCCCCeEEEEEe-ecCCce
Q psy1724 234 GKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLE-FVADEGKVYLPYWMMRNLLLDEGELVNIESV-SLPVAT 311 (473)
Q Consensus 234 dKIiLPpSaL~~L~~~~i~~Pm~F~L~n~~~~r~th~GVLE-FsA~EG~v~LP~WMm~~L~l~egd~V~I~~v-~LPkGt 311 (473)
.-|.|.|..+++|. +..==+-+|+... .+.+.|-++. =..+.|.|.|..-+.+|+++..||.|.|+-+ .++.++
T Consensus 37 ~~~~~~~~~~~~l~---~~~gd~v~i~g~~-~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~v~~gd~V~v~~~~~~~~a~ 112 (806)
T 3cf2_A 37 SVVSLSQPKMDELQ---LFRGDTVLLKGKK-RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGK 112 (806)
T ss_dssp TEEEECHHHHHHTT---CCSSCEEEEECGG-GCBCCEEEEECTTSBTTBCEECHHHHHTTTCCTTCEEEEEECCCCCBCS
T ss_pred CEEEECHHHHHHcC---CCCCCEEEEEcCC-CceEEEEEcCCCCCCCCEEEeCHHHHHhcCCCCCCEEEEEECCCCCcCC
Confidence 36889999998874 3222233555332 2233344332 2345799999999999999999999999988 799999
Q ss_pred EEEEEeCccCcCCC--CCcHHHHHHhcc-cceecccCCEEEEEECCEEEEEEEEEecCCCeEEEE-ccceEE
Q psy1724 312 FSKFQPQTCDFLDI--TNPKAVLENCLR-NFACLTSGDMIAINYNSKIYELCVLETKPGNAVTII-ECDMNV 379 (473)
Q Consensus 312 fvkLqP~s~~FldI--snpKavLE~~LR-nystLT~GD~I~I~yn~~~Y~l~V~e~kP~~aVsII-dTDleV 379 (473)
.|.|.|.+..--.+ ......|...|. .+-.+++||+|.+.+.+....|.|++++|...+.|- +|.+.+
T Consensus 113 ~v~l~p~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~~P~~~~~v~~~T~i~~ 184 (806)
T 3cf2_A 113 RIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHC 184 (806)
T ss_dssp BEEEEEBTTTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEESSSSEEECCTTSBCCB
T ss_pred EEEEeccccchhccchhHHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEEEEEEeCCCCeEECCCcEEEE
Confidence 99999975432222 222444555554 367899999999999999999999999998765443 455444
No 10
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=96.94 E-value=0.0031 Score=52.21 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=53.6
Q ss_pred CceEEEEEeCccCcCCC-CCcHHHHHHhcccceecccCCEEEEEECCEEEEEEEEEecCCCeEEEEccceEEEe
Q psy1724 309 VATFSKFQPQTCDFLDI-TNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVTIIECDMNVDF 381 (473)
Q Consensus 309 kGtfvkLqP~s~~FldI-snpKavLE~~LRnystLT~GD~I~I~yn~~~Y~l~V~e~kP~~aVsIIdTDleVDf 381 (473)
-|+-|.|.|.+. +.+ .|....|-+.|++.. +++||+|.|..-++...|.|++++|. +++|.-|=++++
T Consensus 11 ~A~kVvLAP~~~--i~~~~~~~~~lk~~L~grP-V~~GD~I~i~~~G~~i~F~Vv~t~P~--~V~Vt~~T~I~i 79 (83)
T 2jv2_A 11 IMSELKLKPLPK--VELPPDFVDVIRIKLQGKT-VRTGDVIGISILGKEVKFKVVQAYPS--PLRVEDRTKITL 79 (83)
T ss_dssp CCCEEEEEESSS--CCCCHHHHHHHHHHHTTSE-ECTTCEEEEEETTEEEEEEEEEEESS--SEECCTTSEEEE
T ss_pred EEEEEEEcCCCc--eecCccHHHHHHHHHCCCC-ccCCCEEEEeeCCCEEEEEEEEecCc--cEEECCCcEEEE
Confidence 478899999842 334 344566778888855 99999999998889999999999998 778866666665
No 11
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.91 E-value=0.0097 Score=66.03 Aligned_cols=137 Identities=16% Similarity=0.209 Sum_probs=98.7
Q ss_pred CeEeeCHHHHHHHHhCCCCCceeEEEEeCCCCceEEEEEEe-eeeCCCcEEcCHHHHhhcCCCCCCeEEEEEe-ecCCce
Q psy1724 234 GKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLE-FVADEGKVYLPYWMMRNLLLDEGELVNIESV-SLPVAT 311 (473)
Q Consensus 234 dKIiLPpSaL~~L~~~~i~~Pm~F~L~n~~~~r~th~GVLE-FsA~EG~v~LP~WMm~~L~l~egd~V~I~~v-~LPkGt 311 (473)
+.+-|.|.++++|. +..==+-+|+... .+.|.|-|+. -..+.|.|.|..-+.+|+++..||.|.|+-+ ..+.|+
T Consensus 37 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 112 (806)
T 1ypw_A 37 SVVSLSQPKMDELQ---LFRGDTVLLKGKK-RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGK 112 (806)
T ss_dssp SCEEECHHHHHHHT---CCTTCEEEEEETT-TEECCEEEEECSSSCTTEEECCHHHHTTTTCCTTCEEEEEECTTCCBCS
T ss_pred CEEEECHHHHHHcC---CCCCCEEEEecCc-cCcEEEEEecCCCCCCCeEEecHHHHhhcCCCCCCEEEEEECCCCCcCc
Confidence 89999999999884 3222233555432 2356676663 3345789999999999999999999999999 799999
Q ss_pred EEEEEeCccCcCCCCC--cHHHHHHhccc-ceecccCCEEEEEECCEEEEEEEEEecCCCeEEEEc
Q psy1724 312 FSKFQPQTCDFLDITN--PKAVLENCLRN-FACLTSGDMIAINYNSKIYELCVLETKPGNAVTIIE 374 (473)
Q Consensus 312 fvkLqP~s~~FldIsn--pKavLE~~LRn-ystLT~GD~I~I~yn~~~Y~l~V~e~kP~~aVsIId 374 (473)
.|.|.|-+...-.+.. ....|...|.+ +-.+++||++.+......+.|.|.++.|+..+.|..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~v~~ 178 (806)
T 1ypw_A 113 RIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAP 178 (806)
T ss_dssp EEEEEECTTTSSSCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEEEETTTTCCBCCS
T ss_pred EEEEeCCccchhhcccchHHHHHHHHhccCCccccCCCEEEecCCCcceEEEEEeccCCCCceecC
Confidence 9999997533221221 11223333322 456999999999988889999999999987665553
No 12
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.19 E-value=0.19 Score=52.73 Aligned_cols=143 Identities=17% Similarity=0.189 Sum_probs=103.2
Q ss_pred CeEeeCHHHHHHHHhCCCCCceeEEEEeCCCCceEEEEEEe-eeeCCCcEEcCHHHHhhcCCCCCCeEEEEEe-ecCCce
Q psy1724 234 GKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLE-FVADEGKVYLPYWMMRNLLLDEGELVNIESV-SLPVAT 311 (473)
Q Consensus 234 dKIiLPpSaL~~L~~~~i~~Pm~F~L~n~~~~r~th~GVLE-FsA~EG~v~LP~WMm~~L~l~egd~V~I~~v-~LPkGt 311 (473)
+.|.|.|+++++|. +..==+=+|+. +..+.|.|.|+- -..+.|.|-|..-+.+|+|+.-||.|.|+-+ .+|.|+
T Consensus 37 ~~~~~~~~~~~~l~---~~~gd~v~~~g-~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~a~ 112 (489)
T 3hu3_A 37 SVVSLSQPKMDELQ---LFRGDTVLLKG-KKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGK 112 (489)
T ss_dssp TEEEECHHHHHHHT---CCTTCEEEEEC-STTCEEEEEEEECTTSCTTEEECCHHHHHHTTCCTTCEEEEEECTTCCBCS
T ss_pred CEEEECHHHHHHcC---CCCCCEEEEec-CccCcEEEEEeeCCCCCCCEEEecHHHHhhcCCCCCCEEEEEECCCCCccC
Confidence 89999999999885 33222334553 233578999963 2235789999999999999999999999999 999999
Q ss_pred EEEEEeCccCcCCCCCc-HHHHHHhcc--cceecccCCEEEEEECCEEEEEEEEEecCCCeEEEEccceEEEe
Q psy1724 312 FSKFQPQTCDFLDITNP-KAVLENCLR--NFACLTSGDMIAINYNSKIYELCVLETKPGNAVTIIECDMNVDF 381 (473)
Q Consensus 312 fvkLqP~s~~FldIsnp-KavLE~~LR--nystLT~GD~I~I~yn~~~Y~l~V~e~kP~~aVsIIdTDleVDf 381 (473)
-|.|.|-+..--.+..- -..++.-+. .+-.+..||.+.+.-..+..++.+++++|...+ ++..+-.+.+
T Consensus 113 ~v~~~~~~~av~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~~~ 184 (489)
T 3hu3_A 113 RIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYC-IVAPDTVIHC 184 (489)
T ss_dssp EEEEEEBGGGSSSCCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEESSSEE-EECTTCEEEC
T ss_pred EEEEcCCCcccccccchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEEEEEeecCCCce-EEcCCeEEEE
Confidence 99999976544323221 122333322 367788899999999999999999999987544 3333444443
No 13
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=94.62 E-value=0.13 Score=49.07 Aligned_cols=98 Identities=7% Similarity=-0.114 Sum_probs=72.8
Q ss_pred CCeeecCHHHHHHHHhCCCCCceeEEEEeCCCCCeEEEEEeee-EecCCcEeccHhhHhhcCCCCCCcEEEEEe-ee---
Q psy1724 32 GGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEF-VADEGKVYLPYWCFSVSMFPGNEREDVERG-GK--- 106 (473)
Q Consensus 32 GdKIiLP~SaL~~L~~~~i~~PmlF~l~n~~~~~~th~GVLEF-~AeEG~v~LP~wmm~nL~l~~~~~v~ie~~-~l--- 106 (473)
.+.+.|+|+++++|.-..=. +.+|+.. ..+.|+|-|+.- ..++|.|.|..|+++||+...||.|.|+-+ ..
T Consensus 39 rgivrl~p~~m~~Lgl~~GD---~V~I~Gk-r~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A 114 (211)
T 3qwz_A 39 NSVVSLSQPKMDELQLFRGD---TVLLKGX-KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYG 114 (211)
T ss_dssp TTEEEECHHHHHHHTCCBTC---EEEEECS-TTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCCBC
T ss_pred CcEEEECHHHHHHcCCCCCC---EEEEeCC-CCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCc
Confidence 77899999999988543222 4677753 345899999864 456789999999999999999999999988 33
Q ss_pred -----------c---cC--CHHHHHhhcc-cccccccceeeccc
Q psy1724 107 -----------I---IM--PPSALEQLTR-LNICYPMLFKLTNQ 133 (473)
Q Consensus 107 -----------I---~n--~KavLE~~Lr-~~~cLt~g~~~~~~ 133 (473)
+ +. ...+|...|. .+-+++.|+.+...
T Consensus 115 ~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~ 158 (211)
T 3qwz_A 115 KRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVR 158 (211)
T ss_dssp SEEEEEEBGGGCTTCCSCHHHHTTHHHHTTCCEEEETTCEEECC
T ss_pred eEEEEeccCcchhccCchhHHHHHHHHHhhCCceeecCCEEEEc
Confidence 2 11 1445555555 36789999988654
No 14
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=94.54 E-value=0.19 Score=47.06 Aligned_cols=98 Identities=7% Similarity=-0.114 Sum_probs=72.3
Q ss_pred CCeeecCHHHHHHHHhCCCCCceeEEEEeCCCCCeEEEEEeee-EecCCcEeccHhhHhhcCCCCCCcEEEEEe-ee---
Q psy1724 32 GGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEF-VADEGKVYLPYWCFSVSMFPGNEREDVERG-GK--- 106 (473)
Q Consensus 32 GdKIiLP~SaL~~L~~~~i~~PmlF~l~n~~~~~~th~GVLEF-~AeEG~v~LP~wmm~nL~l~~~~~v~ie~~-~l--- 106 (473)
.+.+.|+|+++++|.-..=. +.+|+.. ..+.|+|-|+.- ..++|.|.|..|+.+|++...||.|.|+-+ ..
T Consensus 36 ~givrl~p~~m~~Lgl~~GD---~V~I~Gk-r~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A 111 (187)
T 3tiw_A 36 NSVVSLSQPKMDELQLFRGD---TVLLKGK-KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYG 111 (187)
T ss_dssp TTEEEECHHHHHHHTCCTTC---EEEEECS-TTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCEEC
T ss_pred CcEEEECHHHHHHcCCCCCC---EEEEECC-CCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCc
Confidence 67899999999998643222 4677753 245899999864 456889999999999999999999999888 33
Q ss_pred -----------c---cC--CHHHHHhhccc-ccccccceeeccc
Q psy1724 107 -----------I---IM--PPSALEQLTRL-NICYPMLFKLTNQ 133 (473)
Q Consensus 107 -----------I---~n--~KavLE~~Lr~-~~cLt~g~~~~~~ 133 (473)
+ +. ...+|...|.. +-+++.|+.+...
T Consensus 112 ~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~ 155 (187)
T 3tiw_A 112 KRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVR 155 (187)
T ss_dssp SEEEEEECCCC-----CCHHHHTHHHHHTTTCCEEETTCEEEEE
T ss_pred eEEEEeccccchhhccchhHHHHHHHHhccCCceeeCCCEEEEc
Confidence 1 11 14455566653 6789999988653
No 15
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=93.69 E-value=0.19 Score=46.61 Aligned_cols=94 Identities=11% Similarity=-0.082 Sum_probs=69.1
Q ss_pred CCeeecCHHHHHHHHhCCCCCceeEEEEeCCCCCeEEEEEee-eEec--CCcEeccHhhHhhcCCCCCCcEEEEEeee--
Q psy1724 32 GGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLE-FVAD--EGKVYLPYWCFSVSMFPGNEREDVERGGK-- 106 (473)
Q Consensus 32 GdKIiLP~SaL~~L~~~~i~~PmlF~l~n~~~~~~th~GVLE-F~Ae--EG~v~LP~wmm~nL~l~~~~~v~ie~~~l-- 106 (473)
-+.+.|+|++|++|.-..=. +.+|+ ..+.|+|-|.. +..+ +|.|.|..|+++|+++..||.|.|+-+..
T Consensus 21 r~ivrl~p~~m~~Lgl~~GD---~V~I~---G~r~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD~V~V~~~~~~~ 94 (185)
T 1cz4_A 21 MSRVRLDESSRRLLDAEIGD---VVEIE---KVRKTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDKVKVRKVRTEI 94 (185)
T ss_dssp SSEEEECHHHHHTTCCCTTC---EEEEE---SSSEEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTCEEEEEEECCCB
T ss_pred CCEEEECHHHHHHcCCCCCC---EEEEE---cCCeEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCCEEEEEECCCCC
Confidence 45799999999988633222 25665 35789999985 3333 58999999999999999999999988643
Q ss_pred --------c----------cCCHHHHHhhcccccccccceeecc
Q psy1724 107 --------I----------IMPPSALEQLTRLNICYPMLFKLTN 132 (473)
Q Consensus 107 --------I----------~n~KavLE~~Lr~~~cLt~g~~~~~ 132 (473)
. .+....|...|..+. ++.|+.+..
T Consensus 95 A~~V~l~P~~~~~~~~~~~~~~~~~l~~~l~~rp-v~~Gd~v~v 137 (185)
T 1cz4_A 95 AKKVTLAPIIRKDQRLKFGEGIEEYVQRALIRRP-MLEQDNISV 137 (185)
T ss_dssp CSEEEEEEECSTTCCSCCCSSHHHHHHHHHTTCE-ECTTCEECC
T ss_pred ccEEEEecccccccccccccchHHHHHHHHCCCc-ccCCCEEEE
Confidence 2 233566777777754 788888854
No 16
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=88.27 E-value=0.99 Score=34.86 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=32.6
Q ss_pred eCCCcEEcCHHHHhhcCCCCCCeEEEEEeecCCceEEEEEeCc
Q psy1724 277 ADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQT 319 (473)
Q Consensus 277 A~EG~v~LP~WMm~~L~l~egd~V~I~~v~LPkGtfvkLqP~s 319 (473)
...|+|.+|.=+.+.|+|++||.|.|.... + -+.|+|.+
T Consensus 19 ~~kGqItIPkeiR~~Lgi~~Gd~l~i~~~~---~-~IiL~p~~ 57 (59)
T 1yfb_A 19 DELGRVVIPIELRRTLGIAEKDALEIYVDD---E-KIILKKYK 57 (59)
T ss_dssp CTTCEEECCHHHHHHTTCCTTCEEEEEEET---T-EEEEEECC
T ss_pred CCCCEEEeCHHHHHHcCCCCCCEEEEEEEC---C-EEEEEECC
Confidence 467999999999999999999999887642 3 58888864
No 17
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=86.46 E-value=1.7 Score=36.24 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=47.7
Q ss_pred CCCcEEcCHHHHhhcCCCCCCeEEEEEeecCCce----EEEEEeCccCcCCCCCcHHHHHHhcccceecccCCEEEEEE
Q psy1724 278 DEGKVYLPYWMMRNLLLDEGELVNIESVSLPVAT----FSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINY 352 (473)
Q Consensus 278 ~EG~v~LP~WMm~~L~l~egd~V~I~~v~LPkGt----fvkLqP~s~~FldIsnpKavLE~~LRnystLT~GD~I~I~y 352 (473)
..|+|-+|..+.+.|++++||.|.+..+.+..|. +...+= ++=-+|.=||.+- .---|..||.+.+.-
T Consensus 13 ~~gqvtiP~~iR~~LgI~~GD~V~v~~i~~~~g~~~~~~~~~~v--~~kGqitIPkeiR-----~~lgi~~Gd~l~~~~ 84 (92)
T 2glw_A 13 RIGRIIIPAGTRKFYGIEQGDFVEIKIVKYEGEEPKEGTFTARV--GEQGSVIIPKALR-----DVIGIKPGEVIEVLL 84 (92)
T ss_dssp GGGEEECCHHHHHHHTCCTTCEEEEEEEEEETTEEEEEEEEEEC--CGGGEEECCHHHH-----HHHTCCTTCEEEEEE
T ss_pred CCCEEEecHHHHHHcCCCCCCEEEEEEEEecCCccceeEEEEEE--CcCceEECcHHHH-----HHcCCCCCCEEEEEE
Confidence 3699999999999999999999999876666555 111111 1222556676654 444688999988864
No 18
>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1
Probab=83.25 E-value=4.4 Score=37.52 Aligned_cols=88 Identities=7% Similarity=0.091 Sum_probs=61.4
Q ss_pred CCCcEEcCHHHHhhcCCCCCCeEEEEEeecC-Cc---eEEEEEeCccCcCC------C-CCcHHHHHHhcccce--eccc
Q psy1724 278 DEGKVYLPYWMMRNLLLDEGELVNIESVSLP-VA---TFSKFQPQTCDFLD------I-TNPKAVLENCLRNFA--CLTS 344 (473)
Q Consensus 278 ~EG~v~LP~WMm~~L~l~egd~V~I~~v~LP-kG---tfvkLqP~s~~Fld------I-snpKavLE~~LRnys--tLT~ 344 (473)
+.|+|.|-.-..+-+++.-|+.|.|+.-..| .+ .++-.-=.+.+|+. . -|-..+-..-+++|. .||.
T Consensus 54 ~~G~I~ls~~QR~wa~lsl~~~v~V~~y~p~~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~~Qift~ 133 (189)
T 1cr5_A 54 PPGTIGFNGNQRTWGGWSLNQDVQAKAFDLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYESQIFSP 133 (189)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEEECCHHHHHTTCCEEEEEEEEEEECC-------CCCHHHHHHHHHHHHTTCEECT
T ss_pred CCCEEecCHHHHHhhcccCCCeEEEEEeCCccCCCCcceEEEEEEEEEehhcCCCCCCccCHHHHHHHHHHHHcCCCCCC
Confidence 6899999998888899999999999988543 11 22222222234431 1 244444444555665 6999
Q ss_pred CCEEEEEECCEEEEEEEEEec
Q psy1724 345 GDMIAINYNSKIYELCVLETK 365 (473)
Q Consensus 345 GD~I~I~yn~~~Y~l~V~e~k 365 (473)
|..+.+.|++..|.|.|.++.
T Consensus 134 gQ~l~f~~~g~~l~l~V~~i~ 154 (189)
T 1cr5_A 134 TQYLIMEFQGHFFDLKIRNVQ 154 (189)
T ss_dssp TCEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEEEE
Confidence 999999999999999998764
No 19
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} SCOP: b.52.2.3 d.31.1.1 PDB: 1qdn_A
Probab=80.26 E-value=4.6 Score=37.94 Aligned_cols=88 Identities=17% Similarity=0.251 Sum_probs=61.7
Q ss_pred CCCcEEcCHHHHhhcCCCCCCeEEEEEeecCCc-eEEEEEeCccCcCC------C-CCcHHHHHHhcccce--ecccCCE
Q psy1724 278 DEGKVYLPYWMMRNLLLDEGELVNIESVSLPVA-TFSKFQPQTCDFLD------I-TNPKAVLENCLRNFA--CLTSGDM 347 (473)
Q Consensus 278 ~EG~v~LP~WMm~~L~l~egd~V~I~~v~LPkG-tfvkLqP~s~~Fld------I-snpKavLE~~LRnys--tLT~GD~ 347 (473)
+.|+|.|-.-..+-+++.-||.|.|+.-..+.. .++-.-=.+.+|+. . -|-..+-..-+++|. .+|.|..
T Consensus 60 ~~G~Igls~~QR~wa~lsl~~~v~V~~y~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~~Qift~gQ~ 139 (211)
T 1qcs_A 60 VPGSVAFSLPQRKWAGLSIGQEIEVALYSFDKAKQCIGTMTIEIDFLQKKNIDSNPYDTDKMAAEFIQQFNNQAFSVGQQ 139 (211)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEEEECCCHHHHBEEEEEEEEEESCGGGCCCCEEEHHHHHHHHHHHHTTCEEETTCE
T ss_pred CCCEeecCHHHHhhhcccCCCcEEEEEecCCCCCceEEEEEEEEEehhcCCCCCcccCHHHHHHHHHHHHcCCCCCCCCE
Confidence 689999999999999999999999997754421 22222223334542 1 133444444445566 6999999
Q ss_pred EEEEECCEEEEEEEEEec
Q psy1724 348 IAINYNSKIYELCVLETK 365 (473)
Q Consensus 348 I~I~yn~~~Y~l~V~e~k 365 (473)
|.+.|++..|.|.|.+++
T Consensus 140 l~f~~~g~~l~l~V~~v~ 157 (211)
T 1qcs_A 140 LVFSFNDKLFGLLVKDIE 157 (211)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEECCcEEEEEEeEEE
Confidence 999999999999888754
No 20
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=79.96 E-value=1.2 Score=33.22 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=30.7
Q ss_pred eCCCcEEcCHHHHhhcCCCCCCeEEEEEeecCCceEEEEEeC
Q psy1724 277 ADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQ 318 (473)
Q Consensus 277 A~EG~v~LP~WMm~~L~l~egd~V~I~~v~LPkGtfvkLqP~ 318 (473)
...|+|.+|.=+.+.|++++||.|.+... .+. +.|+|.
T Consensus 9 ~~kgqi~IPk~ir~~lgi~~Gd~v~i~~~---~~~-ivl~p~ 46 (53)
T 2l66_A 9 SRNYQVTIPAKVRQKFQIKEGDLVKVTFD---ESE-GVVKIQ 46 (53)
T ss_dssp CSSSCBCCCHHHHHHSCCCTTCEEEEEEC---SSS-CCEEEE
T ss_pred CCCCEEEeCHHHHHHcCcCCCCEEEEEEE---CCE-EEEEEC
Confidence 35799999999999999999999988753 233 667775
No 21
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=79.89 E-value=4.5 Score=33.65 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=47.3
Q ss_pred CCCCCCCeEeeCHHHHHHHHhCCCCCceeEE-EEeCCCCceEEEEEEee-eeCCCcEEcCHHHHhhcCCCCCCeEEEEE
Q psy1724 228 EDVERGGKIIMPPSALEQLTRLNICYPMLFK-LTNQKMGRITHSGVLEF-VADEGKVYLPYWMMRNLLLDEGELVNIES 304 (473)
Q Consensus 228 ~~~~~GdKIiLPpSaL~~L~~~~i~~Pm~F~-L~n~~~~r~th~GVLEF-sA~EG~v~LP~WMm~~L~l~egd~V~I~~ 304 (473)
..+...++|.+|.++-+.|.=..-. -+.++ +.-. .+. -..+.... ....|+|.+|.=+.+.|++++||.|.+..
T Consensus 9 ~kv~~~gqvtiP~~iR~~LgI~~GD-~V~v~~i~~~-~g~-~~~~~~~~~v~~kGqitIPkeiR~~lgi~~Gd~l~~~~ 84 (92)
T 2glw_A 9 TTVHRIGRIIIPAGTRKFYGIEQGD-FVEIKIVKYE-GEE-PKEGTFTARVGEQGSVIIPKALRDVIGIKPGEVIEVLL 84 (92)
T ss_dssp EECBGGGEEECCHHHHHHHTCCTTC-EEEEEEEEEE-TTE-EEEEEEEEECCGGGEEECCHHHHHHHTCCTTCEEEEEE
T ss_pred EEEeCCCEEEecHHHHHHcCCCCCC-EEEEEEEEec-CCc-cceeEEEEEECcCceEECcHHHHHHcCCCCCCEEEEEE
Confidence 3456678999999999988421111 12232 1111 111 12222223 35689999999999999999999988764
No 22
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=78.14 E-value=3.1 Score=38.23 Aligned_cols=97 Identities=10% Similarity=-0.104 Sum_probs=69.0
Q ss_pred CCCeeecCHHHHHHHHhCCCCCceeEEEEeCCCCCeEEEEEeeeEe----cCCcEeccHhhHhhcCCCCCCcEEEEE-ee
Q psy1724 31 RGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEFVA----DEGKVYLPYWCFSVSMFPGNEREDVER-GG 105 (473)
Q Consensus 31 ~GdKIiLP~SaL~~L~~~~i~~PmlF~l~n~~~~~~th~GVLEF~A----eEG~v~LP~wmm~nL~l~~~~~v~ie~-~~ 105 (473)
..+-+-||++++++|.- ..=-+-+|+.. .+..++|...+.. ..+.|-|..-+.+|+++..||.|.|+. ..
T Consensus 23 ~~~~vrL~~~~~~~L~~---~~gd~VeI~g~--~~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd~V~V~~~~~ 97 (179)
T 1wlf_A 23 RDCFLHLPRRLVAQLHL---LQNQAIEVASD--HQPTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGDQVFLRPCSH 97 (179)
T ss_dssp SSSCEEECHHHHHHTTC---CTTCCEEEESS--SCCEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTCEEEEEECSC
T ss_pred CCcEEECCHHHHHHcCC---CCCcEEEEEeC--CeeEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCCEEEEEECCC
Confidence 56789999999998752 22236677643 3577788777754 467999999999999999999999998 32
Q ss_pred e----------ccC--CH------HHHHhh-cccccccccceeecc
Q psy1724 106 K----------IIM--PP------SALEQL-TRLNICYPMLFKLTN 132 (473)
Q Consensus 106 l----------I~n--~K------avLE~~-Lr~~~cLt~g~~~~~ 132 (473)
. .+. |. ..||.. |.+.-+++.|++++.
T Consensus 98 ~~~A~~V~laP~~~dD~ei~e~~a~~le~~Ll~QiR~v~~G~~i~v 143 (179)
T 1wlf_A 98 VVSCQQVEVEPLSADDWEILELHAISLEQHLLDQIRIVFPKAVVPI 143 (179)
T ss_dssp CEECSEEEEEESSHHHHHHHHHSCSSHHHHHHHHCCEECTTCEEEE
T ss_pred CccceEEEEEcCCcCCeEEehhHHHHHHHHHhcCceeccCCCEEEE
Confidence 1 322 43 233333 444678899999876
No 23
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=69.93 E-value=3.8 Score=31.53 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=26.8
Q ss_pred EecCCcEeccHhhHhhcCCCCCCcEEEEEe
Q psy1724 75 VADEGKVYLPYWCFSVSMFPGNEREDVERG 104 (473)
Q Consensus 75 ~AeEG~v~LP~wmm~nL~l~~~~~v~ie~~ 104 (473)
+...|+|.||.-+.+.|++++||.|.+...
T Consensus 18 v~~kGqItIPkeiR~~Lgi~~Gd~l~i~~~ 47 (59)
T 1yfb_A 18 VDELGRVVIPIELRRTLGIAEKDALEIYVD 47 (59)
T ss_dssp CCTTCEEECCHHHHHHTTCCTTCEEEEEEE
T ss_pred ECCCCEEEeCHHHHHHcCCCCCCEEEEEEE
Confidence 347899999999999999999999988764
No 24
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=68.48 E-value=3.8 Score=30.37 Aligned_cols=29 Identities=10% Similarity=-0.041 Sum_probs=26.3
Q ss_pred ecCCcEeccHhhHhhcCCCCCCcEEEEEe
Q psy1724 76 ADEGKVYLPYWCFSVSMFPGNEREDVERG 104 (473)
Q Consensus 76 AeEG~v~LP~wmm~nL~l~~~~~v~ie~~ 104 (473)
...|++.||.-+.+.|++++||.|.++..
T Consensus 9 ~~kgqi~IPk~ir~~lgi~~Gd~v~i~~~ 37 (53)
T 2l66_A 9 SRNYQVTIPAKVRQKFQIKEGDLVKVTFD 37 (53)
T ss_dssp CSSSCBCCCHHHHHHSCCCTTCEEEEEEC
T ss_pred CCCCEEEeCHHHHHHcCcCCCCEEEEEEE
Confidence 46799999999999999999999998865
No 25
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=65.99 E-value=4.5 Score=45.35 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=55.0
Q ss_pred CCCcEEcCHHHHhhcCCCCCCeEEEEEeecCCceEEEEEeCccCcCCCCCcHHHHHHhcccceecccCCEEEEEECCEEE
Q psy1724 278 DEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIY 357 (473)
Q Consensus 278 ~EG~v~LP~WMm~~L~l~egd~V~I~~v~LPkGtfvkLqP~s~~FldIsnpKavLE~~LRnystLT~GD~I~I~yn~~~Y 357 (473)
+.+.|.|..-.|+.|+|.+||.|.|+..+--.+.-+...+.+ +.+-..-|-..+|.-..+..||.|.|.--
T Consensus 35 d~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~-----~~~~~i~~~~~~r~n~~v~~gd~V~v~~~---- 105 (806)
T 3cf2_A 35 DNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDT-----CSDEKIRMNRVVRNNLRVRLGDVISIQPC---- 105 (806)
T ss_dssp CTTEEEECHHHHHHTTCCSSCEEEEECGGGCBCCEEEEECTT-----SBTTBCEECHHHHHTTTCCTTCEEEEEEC----
T ss_pred CCCEEEECHHHHHHcCCCCCCEEEEEcCCCceEEEEEcCCCC-----CCCCEEEeCHHHHHhcCCCCCCEEEEEEC----
Confidence 467899999999999999999999987653222222233322 22222234456677778899999999642
Q ss_pred EEEEEEecCCCeEEEEcc
Q psy1724 358 ELCVLETKPGNAVTIIEC 375 (473)
Q Consensus 358 ~l~V~e~kP~~aVsIIdT 375 (473)
.+++++..|.|..+
T Consensus 106 ----~~~~~a~~v~l~p~ 119 (806)
T 3cf2_A 106 ----PDVKYGKRIHVLPI 119 (806)
T ss_dssp ----CCCCBCSBEEEEEB
T ss_pred ----CCCCcCCEEEEecc
Confidence 23455555555433
No 26
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=54.54 E-value=7.5 Score=40.68 Aligned_cols=85 Identities=19% Similarity=0.161 Sum_probs=59.7
Q ss_pred CCCceeEEEEeCCCCceEEEEEEeeeeCCCcEEcCHHHHhhcCCCCCCeEEEEEeecCCceEEEEEeCccCcCCCCCcHH
Q psy1724 251 ICYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPKA 330 (473)
Q Consensus 251 i~~Pm~F~L~n~~~~r~th~GVLEFsA~EG~v~LP~WMm~~L~l~egd~V~I~~v~LPkGtfvkLqP~s~~FldIsnpKa 330 (473)
...|--+.+..... .+.|.|+|..--|+.|++.+||.|.|+..+ .+.+.+...|... +..-..
T Consensus 20 ~~~~~~~~v~~~~~------------~d~~~~~~~~~~~~~l~~~~gd~v~~~g~~-~~~~~~~~~~~~~----~~~~~i 82 (489)
T 3hu3_A 20 KNRPNRLIVDEAIN------------EDNSVVSLSQPKMDELQLFRGDTVLLKGKK-RREAVCIVLSDDT----CSDEKI 82 (489)
T ss_dssp CCCTTEEEEECCTT------------CCTTEEEECHHHHHHHTCCTTCEEEEECST-TCEEEEEEEECTT----SCTTEE
T ss_pred ccCCCeeEEccCCC------------CcCCEEEECHHHHHHcCCCCCCEEEEecCc-cCcEEEEEeeCCC----CCCCEE
Confidence 45566666655432 134999999999999999999999999652 2346677777421 222233
Q ss_pred HHHHhcccceecccCCEEEEEE
Q psy1724 331 VLENCLRNFACLTSGDMIAINY 352 (473)
Q Consensus 331 vLE~~LRnystLT~GD~I~I~y 352 (473)
.+-..+|+-..+..||.|.|.-
T Consensus 83 ~~~~~~r~n~~~~~gd~v~v~~ 104 (489)
T 3hu3_A 83 RMNRVVRNNLRVRLGDVISIQP 104 (489)
T ss_dssp ECCHHHHHHTTCCTTCEEEEEE
T ss_pred EecHHHHhhcCCCCCCEEEEEE
Confidence 4566788888899999998864
No 27
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=48.62 E-value=22 Score=28.08 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=30.0
Q ss_pred CCcEEcCHHHHhhcCCCCCCeEEEEEeecCCceEEEEEeCc
Q psy1724 279 EGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQT 319 (473)
Q Consensus 279 EG~v~LP~WMm~~L~l~egd~V~I~~v~LPkGtfvkLqP~s 319 (473)
.+.|.||.=+.+.|+|.+||.|.|... +.-+.|.|..
T Consensus 12 s~~v~iPk~~~~~lgl~~gd~v~i~~~----~~~iii~p~~ 48 (82)
T 1mvf_D 12 SPAVRIPATLMQALNLNIDDEVKIDLV----DGKLIIEPVR 48 (82)
T ss_dssp EEEEECCHHHHHHTTCCTTCBEEEEEE----TTEEEEEEC-
T ss_pred ccEEEECHHHHHHcCCCCCCEEEEEEE----CCEEEEEECC
Confidence 367999999999999999999998653 3458888874
No 28
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=46.70 E-value=15 Score=33.35 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=26.8
Q ss_pred eEE-EEEEeeeeCCCcEEcCHHHHhhcCCCCCCeEEEEEe
Q psy1724 267 ITH-SGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESV 305 (473)
Q Consensus 267 ~th-~GVLEFsA~EG~v~LP~WMm~~L~l~egd~V~I~~v 305 (473)
+.| -.|+|++|+.. +-+.|+|++||.|.|+-.
T Consensus 101 Thh~~~vlEIIAp~~-------LR~~L~LkDGD~V~I~v~ 133 (146)
T 2oyn_A 101 TYHSSEIIEIIAPMK-------LREQFNLKDGDVIKILIK 133 (146)
T ss_dssp CSSCEEEEEEECSSC-------HHHHHTCCTTCEEEEEEE
T ss_pred CCCCCCEEEEEcCcc-------hhhhcCCCCCCEEEEEEe
Confidence 344 68999999865 899999999999998854
No 29
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=44.17 E-value=16 Score=33.92 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=33.1
Q ss_pred eeCCCcEEcCHHHHhhcCCCCCCeEEEEEeecCCceEEEEEeCc
Q psy1724 276 VADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQT 319 (473)
Q Consensus 276 sA~EG~v~LP~WMm~~L~l~egd~V~I~~v~LPkGtfvkLqP~s 319 (473)
+..-|+|.+|.=+.+.|++++||.|.+.. -+.|. +.|+|.+
T Consensus 10 V~~kGqItIPkeiR~~LgI~~GD~l~~~~--~~dG~-Iil~~~~ 50 (178)
T 2w1t_A 10 IDDLGRVVIPKEIRRTLRIREGDPLEIFV--DRDGD-VILKKYS 50 (178)
T ss_dssp CCTTSEEECCHHHHHHTTCCTTCEEEEEE--CTTSC-EEEEECC
T ss_pred ECCCceEEEcHHHHHHcCcCCCCEEEEEE--eCCCE-EEEEECC
Confidence 34679999999999999999999998764 34444 7788864
No 30
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=37.19 E-value=1.7e+02 Score=26.00 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=61.3
Q ss_pred EeeeeCCCcEEcCHHHHhhcCCCCCCeEEEEEeecCCceEEEEEeCccCcCCCCCcHHHHHHhcccce---ecccCCEEE
Q psy1724 273 LEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPKAVLENCLRNFA---CLTSGDMIA 349 (473)
Q Consensus 273 LEFsA~EG~v~LP~WMm~~L~l~egd~V~I~~v~LPkGtfvkLqP~s~~FldIsnpKavLE~~LRnys---tLT~GD~I~ 349 (473)
++|.-..|.+ +|.|=-.=++++.|+...|... | ..+| --.|+..|.+-.+..|. .+..|+.+.
T Consensus 27 ~~f~~G~g~v-ipG~e~aL~Gm~~Ge~~~v~ip-----------p-~~aY-G~~~~~lv~~v~~~~f~~~~~~~~G~~~~ 92 (158)
T 3cgm_A 27 LSYLHGHRNL-IPGLEEALEGREEGEAFQAHVP-----------A-EKAY-GPHDPEGVQVVPLSAFPEDAEVVPGAQFY 92 (158)
T ss_dssp EEEETTSSSS-CHHHHHHHTTCBTTCEEEEEEC-----------G-GGTT-CCCCGGGEEEEEGGGSCTTSCCCTTCEEE
T ss_pred EEEEECCCCc-ChHHHHHHcCCCCCCEEEEEEC-----------c-HHHc-CCCCcceEEEEEHHHCCCCCCCccCCEEE
Confidence 8888877775 8999988899999998886532 1 1122 12355555444444554 588899998
Q ss_pred EEEC-CEEEEEEEEEecCCCeEEEEccceEEEecCCCC
Q psy1724 350 INYN-SKIYELCVLETKPGNAVTIIECDMNVDFAPPVG 386 (473)
Q Consensus 350 I~yn-~~~Y~l~V~e~kP~~aVsIIdTDleVDf~pP~~ 386 (473)
+.-. ++.+...|.++ -++.+.|||--|+-
T Consensus 93 ~~~~~G~~~~~~V~~v--------~~~~v~vD~NHPLA 122 (158)
T 3cgm_A 93 AQDMEGNPMPLTVVAV--------EGEEVTVDFNHPLA 122 (158)
T ss_dssp EEETTTEEEEEEEEEE--------ETTEEEEECSCTTT
T ss_pred EECCCCCEEEEEEEEE--------CCCEEEEeCCcccc
Confidence 8764 35555555554 46677888887764
No 31
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=36.13 E-value=44 Score=27.22 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=27.2
Q ss_pred HHHHhhcCCCCCCeEEEEEeecCCceEEEEE
Q psy1724 286 YWMMRNLLLDEGELVNIESVSLPVATFSKFQ 316 (473)
Q Consensus 286 ~WMm~~L~l~egd~V~I~~v~LPkGtfvkLq 316 (473)
.-+.+.+|+++||.|.|..-+--.|.+|..+
T Consensus 43 DPvar~~G~k~GdVvkI~R~S~taG~~v~YR 73 (77)
T 1eik_A 43 DPVAKAIGAKRGDIVKIIRKSPTAEEFVTYR 73 (77)
T ss_dssp SHHHHGGGCCTTCEEEEEEEETTTEEEEEEE
T ss_pred CHhhHHhCCCCCCEEEEEECCCCCCCcEEEE
Confidence 3489999999999999999999999988754
No 32
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=35.68 E-value=8.2 Score=33.53 Aligned_cols=17 Identities=35% Similarity=0.702 Sum_probs=10.5
Q ss_pred CccceeeeeeeecCCcc
Q psy1724 412 SGFVAFHGTGNRLDGKR 428 (473)
Q Consensus 412 ~~~~~F~G~G~rLdGK~ 428 (473)
.++.+|+|.|+||++=.
T Consensus 5 ~~~~~F~G~G~~Lgs~~ 21 (127)
T 1s3s_G 5 GAFKAFTGEGQKLGSTA 21 (127)
T ss_dssp -----CCSCCCCCCSSC
T ss_pred CCCCCceecCeECCCCC
Confidence 35789999999998843
No 33
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=32.13 E-value=23 Score=39.17 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=58.9
Q ss_pred CCCCceeEEEEeCCCCceEEEEEEeeeeCCCcEEcCHHHHhhcCCCCCCeEEEEEeecCCceEEEEEeCccCcCCCCCcH
Q psy1724 250 NICYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPK 329 (473)
Q Consensus 250 ~i~~Pm~F~L~n~~~~r~th~GVLEFsA~EG~v~LP~WMm~~L~l~egd~V~I~~v~LPkGtfvkLqP~s~~FldIsnpK 329 (473)
....|.-+.+...... +-|.|.|..-.|+.|+|.+||.|.|+..+- +.+-++..|.... ..-.
T Consensus 19 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~ 81 (806)
T 1ypw_A 19 QKNRPNRLIVDEAINE------------DNSVVSLSQPKMDELQLFRGDTVLLKGKKR-REAVCIVLSDDTC----SDEK 81 (806)
T ss_dssp CCCCTTEEEEECCSSC------------CSSCEEECHHHHHHHTCCTTCEEEEEETTT-EECCEEEEECSSS----CTTE
T ss_pred ccCCCceEEEccCcCC------------cCCEEEECHHHHHHcCCCCCCEEEEecCcc-CcEEEEEecCCCC----CCCe
Confidence 3456777766654321 338999999999999999999999998632 2355556664211 1112
Q ss_pred HHHHHhcccceecccCCEEEEEEC
Q psy1724 330 AVLENCLRNFACLTSGDMIAINYN 353 (473)
Q Consensus 330 avLE~~LRnystLT~GD~I~I~yn 353 (473)
..+-...|+-..+..||+|.|.--
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~ 105 (806)
T 1ypw_A 82 IRMNRVVRNNLRVRLGDVISIQPC 105 (806)
T ss_dssp EECCHHHHTTTTCCTTCEEEEEEC
T ss_pred EEecHHHHhhcCCCCCCEEEEEEC
Confidence 224456677788999999988643
No 34
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=29.68 E-value=42 Score=27.38 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=26.2
Q ss_pred HHHhhcCCCCCCeEEEEEeecCCceEEEEE
Q psy1724 287 WMMRNLLLDEGELVNIESVSLPVATFSKFQ 316 (473)
Q Consensus 287 WMm~~L~l~egd~V~I~~v~LPkGtfvkLq 316 (473)
-+++.+|+++||.|.|...+--.|.+|..+
T Consensus 42 Pvar~~G~k~GdVvkI~R~S~taG~~v~YR 71 (78)
T 1hmj_A 42 PVIQEIGAKEGDVVRVIRKSPTAGVSIAYR 71 (78)
T ss_pred HhhHHhCCCCCCEEEEEECCCCCCCcEEEE
Confidence 389999999999999998888888888654
No 35
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=28.81 E-value=40 Score=29.51 Aligned_cols=43 Identities=26% Similarity=0.398 Sum_probs=32.9
Q ss_pred eEEEEEEe-------eee--------CCCcEEcCHHHHhhcCCCCCCeEEEEEeecCCc
Q psy1724 267 ITHSGVLE-------FVA--------DEGKVYLPYWMMRNLLLDEGELVNIESVSLPVA 310 (473)
Q Consensus 267 ~th~GVLE-------FsA--------~EG~v~LP~WMm~~L~l~egd~V~I~~v~LPkG 310 (473)
....|||| |.- .+.-||+|...++..+|..||.|...-. -|+.
T Consensus 49 ~~~~Gvlei~~dG~GFlr~~~~~y~~~~~DiyVs~~~irrf~lr~GD~V~g~vr-~~~~ 106 (130)
T 1a62_A 49 IFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR-PPKE 106 (130)
T ss_dssp EEEEEEEEECTTSCEEEECGGGTTCCCTTCEEECHHHHHHTTCCTTCEEEEEEE-CCCT
T ss_pred EEEEEEEEEcCCCeEEEecCCcCCCCCCCCEEECHHHHhHhCCCCCCEEEEEEe-CCCC
Confidence 45788888 332 2457999999999999999999988744 4443
No 36
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=28.69 E-value=42 Score=30.36 Aligned_cols=29 Identities=10% Similarity=0.000 Sum_probs=25.4
Q ss_pred EEEeeeEecCCcEeccHhhHhhcCCCCCCcEEEEEe
Q psy1724 69 SGVLEFVADEGKVYLPYWCFSVSMFPGNEREDVERG 104 (473)
Q Consensus 69 ~GVLEF~AeEG~v~LP~wmm~nL~l~~~~~v~ie~~ 104 (473)
--|+|++|+.. +-+.|.|+.||.|+|+..
T Consensus 105 ~~vlEIIAp~~-------LR~~L~LkDGD~V~I~v~ 133 (146)
T 2oyn_A 105 SEIIEIIAPMK-------LREQFNLKDGDVIKILIK 133 (146)
T ss_dssp EEEEEEECSSC-------HHHHHTCCTTCEEEEEEE
T ss_pred CCEEEEEcCcc-------hhhhcCCCCCCEEEEEEe
Confidence 57999999886 788999999999999875
No 37
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=28.50 E-value=36 Score=29.82 Aligned_cols=29 Identities=17% Similarity=0.059 Sum_probs=25.3
Q ss_pred CCCcEEcCHHHHhhcCCCCCCeEEEEEee
Q psy1724 278 DEGKVYLPYWMMRNLLLDEGELVNIESVS 306 (473)
Q Consensus 278 ~EG~v~LP~WMm~~L~l~egd~V~I~~v~ 306 (473)
++..|.|-.=-++.|||++||.|+|++..
T Consensus 51 ~~~~v~inp~dA~~lGI~dGd~V~V~s~~ 79 (146)
T 2ki8_A 51 AVNYAEINEEDWNALGLQEGDRVKVKTEF 79 (146)
T ss_dssp SSSEEEECHHHHHHHTCCTTCEEEEECSS
T ss_pred CCCEEEECHHHHHHcCCCCCCEEEEEeCC
Confidence 46789999999999999999999998653
No 38
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=27.29 E-value=50 Score=26.42 Aligned_cols=27 Identities=7% Similarity=0.043 Sum_probs=22.7
Q ss_pred CCCcEEcCHHHHhhcCCCCCCeEEEEE
Q psy1724 278 DEGKVYLPYWMMRNLLLDEGELVNIES 304 (473)
Q Consensus 278 ~EG~v~LP~WMm~~L~l~egd~V~I~~ 304 (473)
+.=++.+|.=+.++|+|++||.+.++.
T Consensus 23 etyYInIPaeI~kaLgIk~gD~fel~v 49 (68)
T 3o27_A 23 TTFYLLIPKDIAEALDIKPDDTFILNM 49 (68)
T ss_dssp CCEEEEECHHHHHHTTCCTTCCEEEEE
T ss_pred eEEEEeCcHHHHHHhCCCCCCEEEEEE
Confidence 344689999999999999999877664
No 39
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=25.74 E-value=23 Score=32.31 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=24.0
Q ss_pred HHhhcCCCCCCeEEEEEeecCCceEEEEE
Q psy1724 288 MMRNLLLDEGELVNIESVSLPVATFSKFQ 316 (473)
Q Consensus 288 Mm~~L~l~egd~V~I~~v~LPkGtfvkLq 316 (473)
-++.|.|+.||.|.|. .+||.+++-.-
T Consensus 58 ~vk~LeLRiGD~VKVd--~vpK~~hiVvG 84 (153)
T 2fhd_A 58 QIKRFFLKKGDVVQST--RLGKIKHTVVK 84 (153)
T ss_dssp SEEESCCCTTCEEEET--TSTTCCEEEEE
T ss_pred hceeeeeecCCEEEEC--CCCCccEEEEE
Confidence 4788999999999999 99999998654
No 40
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=25.60 E-value=1.9e+02 Score=26.02 Aligned_cols=92 Identities=10% Similarity=0.001 Sum_probs=54.5
Q ss_pred EeeeeCCCcEEcCHHHHhhcCCCCCCeEEEEEeecCCceEEEEEeCccCcCCCCCcHHHHHHhcccc---eecccCCEEE
Q psy1724 273 LEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPKAVLENCLRNF---ACLTSGDMIA 349 (473)
Q Consensus 273 LEFsA~EG~v~LP~WMm~~L~l~egd~V~I~~v~LPkGtfvkLqP~s~~FldIsnpKavLE~~LRny---stLT~GD~I~ 349 (473)
++|.-..|. ++|.|--.=++++.|+.+.|... |. .+|- -.|+..|.+-....| ..+..|+++.
T Consensus 32 ~~f~lG~g~-vipG~eeaL~Gm~~Ge~~~v~ip--pe----------~aYG-~~~~~~v~~v~~~~f~~~~~~~~G~~~~ 97 (171)
T 2k8i_A 32 LDYLHGHGS-LISGLETALEGHEVGDKFDVAVG--AN----------DAYG-QYDENLVQRVPKDVFMGVDELQVGMRFL 97 (171)
T ss_dssp EEEETTSCS-SCSHHHHHHTTCCTTCEEEEEEE--TT----------TSSC-CCCTTSEEEEEGGGGTTSSCCCTTCEEE
T ss_pred EEEEECCCC-cchHHHHHHcCCCCCCEEEEEEC--cH----------HhcC-CCChhhEEEeeHHHCCcccCccCCcEEE
Confidence 445544444 47999999999999999887643 11 1121 122222222222233 2588999999
Q ss_pred EEECCEEEEEEEEEecCCCeEEEEccceEEEecCCCC
Q psy1724 350 INYNSKIYELCVLETKPGNAVTIIECDMNVDFAPPVG 386 (473)
Q Consensus 350 I~yn~~~Y~l~V~e~kP~~aVsIIdTDleVDf~pP~~ 386 (473)
+.-.+-.+...|.++ -+..+.|||.-|+-
T Consensus 98 ~~~~~G~~~~~V~~v--------~~~~V~vD~NHPLA 126 (171)
T 2k8i_A 98 AETDQGPVPVEITAV--------EDDHVVVDGNHMLA 126 (171)
T ss_dssp EEETTEEEEEEEEEE--------CSSEEEEESCCSSC
T ss_pred EECCCCcEEEEEEEE--------cCCEEEEeCCCCCC
Confidence 887654344445554 45667788877754
No 41
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=24.77 E-value=52 Score=30.58 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=27.2
Q ss_pred EecCCcEeccHhhHhhcCCCCCCcEEEEEe
Q psy1724 75 VADEGKVYLPYWCFSVSMFPGNEREDVERG 104 (473)
Q Consensus 75 ~AeEG~v~LP~wmm~nL~l~~~~~v~ie~~ 104 (473)
+...|+|.||--+.+.|++++||.|.+...
T Consensus 10 V~~kGqItIPkeiR~~LgI~~GD~l~~~~~ 39 (178)
T 2w1t_A 10 IDDLGRVVIPKEIRRTLRIREGDPLEIFVD 39 (178)
T ss_dssp CCTTSEEECCHHHHHHTTCCTTCEEEEEEC
T ss_pred ECCCceEEEcHHHHHHcCcCCCCEEEEEEe
Confidence 457899999999999999999999998875
No 42
>1yle_A Arginine N-succinyltransferase, alpha chain; structural genomics, acyltransferase, arginine metabolism, protein structure initiative; 1.70A {Pseudomonas aeruginosa} SCOP: d.108.1.8
Probab=22.83 E-value=72 Score=32.42 Aligned_cols=44 Identities=30% Similarity=0.342 Sum_probs=33.3
Q ss_pred EEEEeCCCC--ceEEEEEEeeeeCCCc-EEcCHHHHhhcCCCCCCeEEEE
Q psy1724 257 FKLTNQKMG--RITHSGVLEFVADEGK-VYLPYWMMRNLLLDEGELVNIE 303 (473)
Q Consensus 257 F~L~n~~~~--r~th~GVLEFsA~EG~-v~LP~WMm~~L~l~egd~V~I~ 303 (473)
+-|.|..-. |.| +.+...+.|. +.|+.-+++.|++++||.|++-
T Consensus 292 ~lv~n~~~~~FRa~---~~~~~~~~~~~~~l~~~~a~aL~v~~Gd~vr~~ 338 (342)
T 1yle_A 292 YLVTNGQLQDFRAV---VLDLDWAPGKPVALSVEAAEALGVGEGASVRLV 338 (342)
T ss_dssp EEEECCCSTTCCEE---EEEECCCTTSCEEECHHHHHHHTCCTTCEEEEE
T ss_pred EEEECCCccCeeEE---EeccccCCCCeEecCHHHHHhcCCCCCCEEEEE
Confidence 667775432 444 4455666677 9999999999999999999974
No 43
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=22.73 E-value=1.1e+02 Score=23.63 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=36.3
Q ss_pred cCCCCCCeEEEEEe-ecCCceEEEEEeCccCcCCCCCcHHHHHHhcccceecccCCEEEEE
Q psy1724 292 LLLDEGELVNIESV-SLPVATFSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAIN 351 (473)
Q Consensus 292 L~l~egd~V~I~~v-~LPkGtfvkLqP~s~~FldIsnpKavLE~~LRnystLT~GD~I~I~ 351 (473)
|.++.|+.+.-+-+ -.+.|-||.|.+.-..|+-+++... ..+..+..||.|.+.
T Consensus 1 m~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~------~~~~~~~~Gd~V~v~ 55 (80)
T 2k52_A 1 MDVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMIS------LRLENLNVGDEIIVQ 55 (80)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSS------CCGGGCCTTCEEEEE
T ss_pred CCCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCc------ccceeeCCCCEEEEE
Confidence 35678988776654 4689999999876666765543210 011578999998764
No 44
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=22.63 E-value=96 Score=28.76 Aligned_cols=91 Identities=9% Similarity=-0.002 Sum_probs=55.9
Q ss_pred eeeeCCCcEEcCHHHHhhcCCCCCCeEEEEEeecCCceEEEEEeCccCcCCCCCcHHHHHHhcccce---ecccCCEEEE
Q psy1724 274 EFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPKAVLENCLRNFA---CLTSGDMIAI 350 (473)
Q Consensus 274 EFsA~EG~v~LP~WMm~~L~l~egd~V~I~~v~LPkGtfvkLqP~s~~FldIsnpKavLE~~LRnys---tLT~GD~I~I 350 (473)
+|.--.|. ++|.|--.=++++.|+.+.|.. |.. .+|- -.|+..|.+-.+..|. .|..|+++.+
T Consensus 33 ~f~lG~g~-vipG~eeaL~Gm~vGe~~~v~I---ppe---------~aYG-e~~~~lV~~vp~~~f~~~~~~~~G~~~~~ 98 (196)
T 2kfw_A 33 DYLHGHGS-LISGLETALEGHEVGDKFDVAV---GAN---------DAYG-QYDENLVQRVPKDVFMGVDELQVGMRFLA 98 (196)
T ss_dssp EEESSSSS-SCHHHHHHHSSSCTTCEEEEEC---STT---------TTSS-CCCTTTCEEECGGGCCCSSCCCTTCEEEE
T ss_pred EEEECCCC-cchHHHHHHcCCCCCCEEEEEe---CcH---------HhcC-CCChhhEEEEEHHHCCCccCcccCCEEEE
Confidence 44443443 4799988889999999888653 211 1222 1344444443444454 4889999998
Q ss_pred EECCEEEEEEEEEecCCCeEEEEccceEEEecCCCC
Q psy1724 351 NYNSKIYELCVLETKPGNAVTIIECDMNVDFAPPVG 386 (473)
Q Consensus 351 ~yn~~~Y~l~V~e~kP~~aVsIIdTDleVDf~pP~~ 386 (473)
.-.+-.+...|+++ -+..+.|||--|+-
T Consensus 99 ~~~~G~~~~~V~~v--------~~~~V~vD~NHPLA 126 (196)
T 2kfw_A 99 ETDQGPVPVEITAV--------EDDHVVVDGNHMLA 126 (196)
T ss_dssp EETTEEEEEEBCCC--------CSSSEEECCCCTTS
T ss_pred ECCCCcEEEEEEEE--------cCCEEEEeCCCCCC
Confidence 76655444445554 45567788887764
No 45
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=22.05 E-value=88 Score=27.34 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=22.9
Q ss_pred ccceecccCCEEEEEECCEEEEEEEEEe
Q psy1724 337 RNFACLTSGDMIAINYNSKIYELCVLET 364 (473)
Q Consensus 337 RnystLT~GD~I~I~yn~~~Y~l~V~e~ 364 (473)
++..-|..||.|.|...++.|...|.++
T Consensus 71 ~~L~~l~~GD~i~v~~~~~~~~Y~V~~~ 98 (147)
T 2ln7_A 71 TDLGQLKEKDTLVLEYDNKTYTYEIQKI 98 (147)
T ss_dssp SHHHHSSTTCEEEEEETTEEEEEEEEEE
T ss_pred hhhhcccCCCEEEEEECCcEEEEEEEeE
Confidence 3334578999999999999999988765
No 46
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=20.80 E-value=1e+02 Score=25.20 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=25.2
Q ss_pred HHHhhcCCCCCCeEEEEEeecCCceEEEEE
Q psy1724 287 WMMRNLLLDEGELVNIESVSLPVATFSKFQ 316 (473)
Q Consensus 287 WMm~~L~l~egd~V~I~~v~LPkGtfvkLq 316 (473)
-+.+.+|+++||+|.|.-.+--.|.++-.+
T Consensus 50 Pva~~~g~k~GdVvkI~R~S~tag~~~~YR 79 (84)
T 4ayb_H 50 PVARSINAKPGDIIRIIRKSQLYGEVVSYR 79 (84)
T ss_dssp HHHHHHTCCTTCEEEEEEEETTTEEEEEEE
T ss_pred HhHHhhCCCCCCEEEEEEcCCCCCccEEEE
Confidence 389999999999999998887788877543
No 47
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=20.48 E-value=35 Score=29.32 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=25.7
Q ss_pred cCHHHHhhcCCCCCCeEEEEEeecCCceEEEE
Q psy1724 284 LPYWMMRNLLLDEGELVNIESVSLPVATFSKF 315 (473)
Q Consensus 284 LP~WMm~~L~l~egd~V~I~~v~LPkGtfvkL 315 (473)
|=..||+.|.|.+.|.|.|....|++|+-+.+
T Consensus 17 ~~~~~m~~I~i~p~DNVaVAl~~L~aG~~v~~ 48 (105)
T 3k3s_A 17 LYFQGMQYIKIHALDNVAVALADLAEGTEVSV 48 (105)
T ss_dssp ----CCSEECCSTTCSEEEESSCBCTTCEEEE
T ss_pred hhhhcCCEEEcCCCCCEEEecCccCCCCEEee
Confidence 33569999999999999999889999998764
No 48
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=20.45 E-value=97 Score=28.60 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=39.5
Q ss_pred ecCCceEEEEEeCccCcC-CCCCcHHHHHHhcccceecccCCEEEEEEC
Q psy1724 306 SLPVATFSKFQPQTCDFL-DITNPKAVLENCLRNFACLTSGDMIAINYN 353 (473)
Q Consensus 306 ~LPkGtfvkLqP~s~~Fl-dIsnpKavLE~~LRnystLT~GD~I~I~yn 353 (473)
.-+.||.|.|+|--.-|+ ...---..|.+.||.++.|..|=.|.+...
T Consensus 133 ~~~~GT~V~F~Pd~~iF~~~~~~~~~~l~~rlrelA~ln~gv~i~l~de 181 (198)
T 3ttz_A 133 TDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDE 181 (198)
T ss_dssp CSCCEEEEEEEECTTTCCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEEC
T ss_pred CCCCCcEEEEEECHHHhccCCccCHHHHHHHHHHHhhcCCCCEEEEEee
Confidence 358999999999988894 444556789999999999999988877754
No 49
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=20.38 E-value=94 Score=29.25 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=40.8
Q ss_pred ecCCceEEEEEeCccCcCCC-CCcHHHHHHhcccceecccCCEEEEEEC
Q psy1724 306 SLPVATFSKFQPQTCDFLDI-TNPKAVLENCLRNFACLTSGDMIAINYN 353 (473)
Q Consensus 306 ~LPkGtfvkLqP~s~~FldI-snpKavLE~~LRnystLT~GD~I~I~yn 353 (473)
.-+.||-|.|+|--.-|... .-....|++.||.++-|..|=.|.+...
T Consensus 160 ~~~~GT~V~F~Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~de 208 (220)
T 4duh_A 160 TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK 208 (220)
T ss_dssp CSCCEEEEEEEECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEET
T ss_pred cCCCCcEEEEEECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 46899999999998889875 5566789999999999999988877754
Done!