Your job contains 1 sequence.
>psy1724
MFPDIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTN
QKMGRITHSGVLEFVADEGKVYLPYWCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRL
NICYPMLFKLTNQKMGRITHSGVLELDGKRKKKDTVETGGTPTKREYQRGIPHYDYEPNT
LVFLRNIKPASAHKEFQFGFNMFPDIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPP
SALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELV
NIESVSLPVATFSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELC
VLETKPGNAVTIIECDMNVDFAPPVGYTEPEKVKEKEEDNMIDPVDLMPEPSGFVAFHGT
GNRLDGKRKKKDTVETGGTPTKREYQRGIPHYDYEPNTLVFLRNIKPASAHKE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1724
(473 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0036136 - symbol:Ufd1-like "Ubiquitin fusion-degra... 863 2.6e-86 1
UNIPROTKB|F1NVD8 - symbol:UFD1L "Uncharacterized protein"... 863 2.6e-86 1
UNIPROTKB|J9NYF2 - symbol:UFD1L "Uncharacterized protein"... 856 1.4e-85 1
UNIPROTKB|Q92890 - symbol:UFD1L "Ubiquitin fusion degrada... 856 1.4e-85 1
RGD|619822 - symbol:Ufd1l "ubiquitin fusion degradation 1... 856 1.4e-85 1
MGI|MGI:109353 - symbol:Ufd1l "ubiquitin fusion degradati... 856 1.4e-85 1
UNIPROTKB|F1RK61 - symbol:UFD1L "Uncharacterized protein"... 854 2.4e-85 1
ZFIN|ZDB-GENE-040718-150 - symbol:ufd1l "ubiquitin fusion... 838 1.2e-83 1
UNIPROTKB|F1PAI5 - symbol:UFD1L "Uncharacterized protein"... 834 3.1e-83 1
UNIPROTKB|A6NJ11 - symbol:UFD1L "Ubiquitin fusion degrada... 777 3.4e-77 1
UNIPROTKB|Q0P568 - symbol:UFD1L "Ubiquitin fusion degrada... 756 5.7e-75 1
UNIPROTKB|C9IZG3 - symbol:UFD1L "Ubiquitin fusion degrada... 665 2.5e-65 1
TAIR|locus:2050054 - symbol:UFD1 "AT2G21270" species:3702... 600 1.9e-58 1
TAIR|locus:2066122 - symbol:AT2G29070 species:3702 "Arabi... 566 7.8e-55 1
TAIR|locus:2120247 - symbol:AT4G38930 "AT4G38930" species... 563 1.6e-54 1
UNIPROTKB|G4NAF1 - symbol:MGG_03175 "Ubiquitin fusion deg... 513 2.9e-52 2
SGD|S000003280 - symbol:UFD1 "Substrate-recruiting cofact... 535 1.5e-51 1
CGD|CAL0002326 - symbol:orf19.5833 species:5476 "Candida ... 507 6.8e-51 2
POMBASE|SPBC16A3.09c - symbol:ufd1 "Cdc48-Ufd1-Npl4 compl... 526 1.3e-50 1
DICTYBASE|DDB_G0271122 - symbol:ufd1 "ubiquitin fusion de... 516 1.5e-49 1
WB|WBGene00006733 - symbol:ufd-1 species:6239 "Caenorhabd... 471 3.3e-49 2
UNIPROTKB|C9JNP9 - symbol:UFD1L "Ubiquitin fusion degrada... 482 6.2e-46 1
GENEDB_PFALCIPARUM|PF14_0178 - symbol:PF14_0178 "hypothet... 479 1.3e-45 1
UNIPROTKB|Q8ILR6 - symbol:UFD1 "Ubiquitin fusion degradat... 479 1.3e-45 1
UNIPROTKB|C9J6N9 - symbol:UFD1L "Ubiquitin fusion degrada... 476 2.7e-45 1
UNIPROTKB|C9J7C8 - symbol:UFD1L "Ubiquitin fusion degrada... 259 9.6e-22 1
TAIR|locus:2130120 - symbol:AT4G15420 species:3702 "Arabi... 249 2.7e-18 1
ASPGD|ASPL0000066677 - symbol:AN10877 species:162425 "Eme... 142 9.0e-07 2
>FB|FBgn0036136 [details] [associations]
symbol:Ufd1-like "Ubiquitin fusion-degradation 1-like"
species:7227 "Drosophila melanogaster" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP;NAS]
[GO:0006508 "proteolysis" evidence=IMP] [GO:0032436 "positive
regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=NAS] InterPro:IPR004854 Pfam:PF03152 EMBL:AE014296
GO:GO:0000502 GO:GO:0006511 GO:GO:0032436 eggNOG:COG5140
GeneTree:ENSGT00390000002408 KO:K14016 PANTHER:PTHR12555
EMBL:AF228282 EMBL:AF228283 EMBL:AY060735 RefSeq:NP_524023.1
UniGene:Dm.927 ProteinModelPortal:Q9VTF9 SMR:Q9VTF9 DIP:DIP-21844N
IntAct:Q9VTF9 MINT:MINT-755529 STRING:Q9VTF9 PaxDb:Q9VTF9
PRIDE:Q9VTF9 EnsemblMetazoa:FBtr0076223 GeneID:39254
KEGG:dme:Dmel_CG6233 CTD:39254 FlyBase:FBgn0036136
InParanoid:Q9VTF9 OMA:YKCFSVS OrthoDB:EOG463XTR PhylomeDB:Q9VTF9
GenomeRNAi:39254 NextBio:812728 Bgee:Q9VTF9 GermOnline:CG6233
Uniprot:Q9VTF9
Length = 316
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 177/285 (62%), Positives = 209/285 (73%)
Query: 196 FQF-GFNM-FPDIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICY 253
F F GFNM FP+ R F+ +YKCFSVSM PGNER DVE+GGKIIMPPSAL+ LTRLN+ Y
Sbjct: 2 FHFSGFNMMFPE-GRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEY 60
Query: 254 PMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFS 313
PMLFKLTN K R +H+GVLEFVADEGK YLP+WMM NLLL EG+++NIESVSLPVATFS
Sbjct: 61 PMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFS 120
Query: 314 KFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVTII 373
KFQP + DFLDITNPKAVLEN LRNFACLT GD+IAI YN K+YELCVLETKPGNAV+II
Sbjct: 121 KFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSII 180
Query: 374 ECDMNVDFAPPVGYTEPEKVKEKEEDNMIDPVDLMPEPSGFV---------AFHGTGNRL 424
ECDMNV+F PVGY + + + + E +G F G+G RL
Sbjct: 181 ECDMNVEFEAPVGYKDHSETQASGSGQQGAAGTVGGEIAGATNAILEEVVETFKGSGVRL 240
Query: 425 DGKRKKKDTVETGGTPTKREYQRGIPHYDYEPNTLVFLRNIKPAS 469
DGK+KK+ +ET K+ RG+P YD++ + F RNI+P S
Sbjct: 241 DGKKKKESQLET--PVVKKVLARGVPDYDFQFGLIRFDRNIRPIS 283
Score = 337 (123.7 bits), Expect = 4.2e-42, Sum P(3) = 4.2e-42
Identities = 64/86 (74%), Positives = 73/86 (84%)
Query: 1 MFPDIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTN 60
MFP+ R F+ +YKCFSVSM PGNER DVE+GGKIIMPPSAL+ LTRLN+ YPMLFKLTN
Sbjct: 10 MFPE-GRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEYPMLFKLTN 68
Query: 61 QKMGRITHSGVLEFVADEGKVYLPYW 86
K R +H+GVLEFVADEGK YLP+W
Sbjct: 69 VKKSRSSHAGVLEFVADEGKCYLPHW 94
Score = 247 (92.0 bits), Expect = 6.2e-31, Sum P(3) = 6.2e-31
Identities = 50/79 (63%), Positives = 58/79 (73%)
Query: 68 HSGVLEFVADEGK-VYLPYWCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPM 126
H + EG+ + Y CFSVSM PGNER DVE+GGKIIMPPSAL+ LTRLN+ YPM
Sbjct: 3 HFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEYPM 62
Query: 127 LFKLTNQKMGRITHSGVLE 145
LFKLTN K R +H+GVLE
Sbjct: 63 LFKLTNVKKSRSSHAGVLE 81
Score = 99 (39.9 bits), Expect = 4.2e-42, Sum P(3) = 4.2e-42
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 141 SGVLELDGKRKKKDTVETGGTPTKREYQRGIPHYDYEPNTLVFLRNIKPAS 191
SGV LDGK+KK+ +ET K+ RG+P YD++ + F RNI+P S
Sbjct: 236 SGV-RLDGKKKKESQLET--PVVKKVLARGVPDYDFQFGLIRFDRNIRPIS 283
Score = 37 (18.1 bits), Expect = 4.2e-42, Sum P(3) = 4.2e-42
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 393 VKEKEEDNMIDPVDLMPEPSGFVAFHGTGNRLDGKRK 429
+ ++ +++ D V + S +FHGTG + RK
Sbjct: 282 ISDRSQED--DAVAGNADASDAESFHGTGFSMKKTRK 316
>UNIPROTKB|F1NVD8 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737 GO:GO:0006511
GeneTree:ENSGT00390000002408 PANTHER:PTHR12555 OMA:IRNSRPQ
EMBL:AADN02034776 IPI:IPI00589702 Ensembl:ENSGALT00000034831
Uniprot:F1NVD8
Length = 307
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 179/280 (63%), Positives = 214/280 (76%)
Query: 197 QFGFNMFPD-IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLN 250
QF FNMF IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLN
Sbjct: 1 QFSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN 60
Query: 251 ICYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVA 310
I YPMLFKLTN+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VA
Sbjct: 61 ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVA 120
Query: 311 TFSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAV 370
T+SKFQPQ+ DFLDITNPKAVLEN LR+FACLT+GD+IAINYN KIYEL V+ETKP AV
Sbjct: 121 TYSKFQPQSPDFLDITNPKAVLENALRSFACLTTGDVIAINYNEKIYELRVMETKPDKAV 180
Query: 371 TIIECDMNVDFAPPVGYTEPEKVKEKEEDNMIDPVDLMPEPS--GFVAFHGTGNRLDGKR 428
+IIECDMNVDF P+GY EPE+ + EE ++ D S GF AF G+GNRLDGK+
Sbjct: 181 SIIECDMNVDFDAPLGYKEPERSAQHEETTDVE-ADHSGYVSDVGFRAFSGSGNRLDGKK 239
Query: 429 KKKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 467
K VE +P K + +RGIP+YD++ + F+RN +P
Sbjct: 240 KG---VEPSPSPIKPGDIRRGIPNYDFKIGRITFIRNSRP 276
Score = 305 (112.4 bits), Expect = 5.4e-37, Sum P(3) = 5.4e-37
Identities = 62/87 (71%), Positives = 70/87 (80%)
Query: 5 IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLT 59
IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLT
Sbjct: 11 IPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLT 70
Query: 60 NQKMGRITHSGVLEFVADEGKVYLPYW 86
N+ R+TH GVLEFVADEG YLP+W
Sbjct: 71 NKNSDRMTHCGVLEFVADEGICYLPHW 97
Score = 233 (87.1 bits), Expect = 2.8e-28, Sum P(3) = 2.8e-28
Identities = 46/62 (74%), Positives = 52/62 (83%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+TH GV
Sbjct: 23 YRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGV 82
Query: 144 LE 145
LE
Sbjct: 83 LE 84
Score = 86 (35.3 bits), Expect = 5.4e-37, Sum P(3) = 5.4e-37
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 146 LDGKRKKKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 189
LDGK+K VE +P K + +RGIP+YD++ + F+RN +P
Sbjct: 235 LDGKKKG---VEPSPSPIKPGDIRRGIPNYDFKIGRITFIRNSRP 276
Score = 40 (19.1 bits), Expect = 5.4e-37, Sum P(3) = 5.4e-37
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 412 SGFVAFHGTGNRLDGKRKK 430
S F+AF G G L K +K
Sbjct: 288 SRFIAFSGEGQSLRKKGRK 306
>UNIPROTKB|J9NYF2 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR004854 Pfam:PF03152
GO:GO:0006511 GeneTree:ENSGT00390000002408 KO:K14016
PANTHER:PTHR12555 CTD:7353 EMBL:AAEX03014865 EMBL:AAEX03014866
RefSeq:XP_850373.3 Ensembl:ENSCAFT00000047839 GeneID:608300
KEGG:cfa:608300 Uniprot:J9NYF2
Length = 307
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 178/279 (63%), Positives = 212/279 (75%)
Query: 198 FGFNMFPD-IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNI 251
F FNMF IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 252 CYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVAT 311
YPMLFKLTN+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 121
Query: 312 FSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVT 371
+SKFQPQ+ DFLDITNPKAVLEN LRNFACLT+GD+IAINYN KIYEL V+ETKP AV+
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVS 181
Query: 372 IIECDMNVDFAPPVGYTEPEKVKEKEE--DNMIDPVDLMPEPSGFVAFHGTGNRLDGKRK 429
IIECDMNVDF P+GY EPE+ + EE + D E GF AF G+GNRLDGK+K
Sbjct: 182 IIECDMNVDFDAPLGYKEPERQVQHEESAEGEADHSGYAGE-LGFRAFSGSGNRLDGKKK 240
Query: 430 KKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 467
VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 241 G---VEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
Score = 305 (112.4 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 62/87 (71%), Positives = 70/87 (80%)
Query: 5 IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLT 59
IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLT
Sbjct: 11 IPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLT 70
Query: 60 NQKMGRITHSGVLEFVADEGKVYLPYW 86
N+ R+TH GVLEFVADEG YLP+W
Sbjct: 71 NKNSDRMTHCGVLEFVADEGICYLPHW 97
Score = 233 (87.1 bits), Expect = 7.2e-28, Sum P(3) = 7.2e-28
Identities = 46/62 (74%), Positives = 52/62 (83%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+TH GV
Sbjct: 23 YRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGV 82
Query: 144 LE 145
LE
Sbjct: 83 LE 84
Score = 82 (33.9 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 146 LDGKRKKKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 189
LDGK+K VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 235 LDGKKKG---VEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
Score = 40 (19.1 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 410 EPSG-FVAFHGTGNRLDGKRKK 430
E G FVAF G G L K +K
Sbjct: 285 EAGGRFVAFSGEGQSLRKKGRK 306
>UNIPROTKB|Q92890 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0005102 "receptor binding"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001501 "skeletal system development"
evidence=TAS] [GO:0004843 "ubiquitin-specific protease activity"
evidence=TAS] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=TAS] InterPro:IPR004854 Pfam:PF03152
UniPathway:UPA00144 GO:GO:0005829 GO:GO:0005634 GO:GO:0005737
GO:GO:0043161 GO:GO:0001501 GO:GO:0006511 Orphanet:567
GO:GO:0004843 EMBL:AC000087 eggNOG:COG5140 HOGENOM:HOG000212737
KO:K14016 PANTHER:PTHR12555 EMBL:U64444 EMBL:AF141201 EMBL:CR456607
EMBL:AK225877 EMBL:AC000068 EMBL:BC001049 EMBL:BC005087
IPI:IPI00218292 IPI:IPI00655754 IPI:IPI00852988
RefSeq:NP_001030324.2 RefSeq:NP_005650.2 UniGene:Hs.474213 PDB:2YUJ
PDBsum:2YUJ ProteinModelPortal:Q92890 SMR:Q92890 DIP:DIP-45954N
IntAct:Q92890 MINT:MINT-2837704 STRING:Q92890 PhosphoSite:Q92890
DMDM:160332310 OGP:Q92890 PaxDb:Q92890 PRIDE:Q92890 DNASU:7353
Ensembl:ENST00000263202 Ensembl:ENST00000399523 GeneID:7353
KEGG:hsa:7353 UCSC:uc002zpm.2 CTD:7353 GeneCards:GC22M019437
HGNC:HGNC:12520 HPA:HPA030287 MIM:601754 neXtProt:NX_Q92890
PharmGKB:PA37167 HOVERGEN:HBG001266 OrthoDB:EOG4H9XKW ChiTaRS:UFD1L
EvolutionaryTrace:Q92890 GenomeRNAi:7353 NextBio:28788
ArrayExpress:Q92890 Bgee:Q92890 CleanEx:HS_UFD1L
Genevestigator:Q92890 Uniprot:Q92890
Length = 307
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 178/279 (63%), Positives = 212/279 (75%)
Query: 198 FGFNMFPD-IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNI 251
F FNMF IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 252 CYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVAT 311
YPMLFKLTN+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 121
Query: 312 FSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVT 371
+SKFQPQ+ DFLDITNPKAVLEN LRNFACLT+GD+IAINYN KIYEL V+ETKP AV+
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVS 181
Query: 372 IIECDMNVDFAPPVGYTEPEKVKEKEE--DNMIDPVDLMPEPSGFVAFHGTGNRLDGKRK 429
IIECDMNVDF P+GY EPE+ + EE + D E GF AF G+GNRLDGK+K
Sbjct: 182 IIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGE-LGFRAFSGSGNRLDGKKK 240
Query: 430 KKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 467
VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 241 G---VEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
Score = 305 (112.4 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 62/87 (71%), Positives = 70/87 (80%)
Query: 5 IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLT 59
IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLT
Sbjct: 11 IPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLT 70
Query: 60 NQKMGRITHSGVLEFVADEGKVYLPYW 86
N+ R+TH GVLEFVADEG YLP+W
Sbjct: 71 NKNSDRMTHCGVLEFVADEGICYLPHW 97
Score = 233 (87.1 bits), Expect = 7.2e-28, Sum P(3) = 7.2e-28
Identities = 46/62 (74%), Positives = 52/62 (83%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+TH GV
Sbjct: 23 YRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGV 82
Query: 144 LE 145
LE
Sbjct: 83 LE 84
Score = 82 (33.9 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 146 LDGKRKKKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 189
LDGK+K VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 235 LDGKKKG---VEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
Score = 40 (19.1 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 410 EPSG-FVAFHGTGNRLDGKRKK 430
E G FVAF G G L K +K
Sbjct: 285 EAGGRFVAFSGEGQSLRKKGRK 306
>RGD|619822 [details] [associations]
symbol:Ufd1l "ubiquitin fusion degradation 1 like (yeast)"
species:10116 "Rattus norvegicus" [GO:0005102 "receptor binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IPI] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 UniPathway:UPA00144
RGD:619822 GO:GO:0005829 GO:GO:0005634 GO:GO:0043161 EMBL:CH473999
KO:K14016 PANTHER:PTHR12555 HSSP:P53044 CTD:7353 EMBL:AF234601
EMBL:BC161818 IPI:IPI00195248 RefSeq:NP_445870.1 UniGene:Rn.11946
ProteinModelPortal:Q9ES53 SMR:Q9ES53 IntAct:Q9ES53
PhosphoSite:Q9ES53 PRIDE:Q9ES53 GeneID:84478 KEGG:rno:84478
NextBio:616986 Genevestigator:Q9ES53 Uniprot:Q9ES53
Length = 307
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 178/279 (63%), Positives = 212/279 (75%)
Query: 198 FGFNMFPD-IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNI 251
F FNMF IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 252 CYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVAT 311
YPMLFKLTN+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 121
Query: 312 FSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVT 371
+SKFQPQ+ DFLDITNPKAVLEN LRNFACLT+GD+IAINYN KIYEL V+ETKP AV+
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVS 181
Query: 372 IIECDMNVDFAPPVGYTEPEKVKEKEE--DNMIDPVDLMPEPSGFVAFHGTGNRLDGKRK 429
IIECDMNVDF P+GY EPE+ + EE + D E GF AF G+GNRLDGK+K
Sbjct: 182 IIECDMNVDFDAPLGYKEPERPVQHEESIEGEADHSGYAGEV-GFRAFSGSGNRLDGKKK 240
Query: 430 KKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 467
VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 241 G---VEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
Score = 305 (112.4 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 62/87 (71%), Positives = 70/87 (80%)
Query: 5 IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLT 59
IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLT
Sbjct: 11 IPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLT 70
Query: 60 NQKMGRITHSGVLEFVADEGKVYLPYW 86
N+ R+TH GVLEFVADEG YLP+W
Sbjct: 71 NKNSDRMTHCGVLEFVADEGICYLPHW 97
Score = 233 (87.1 bits), Expect = 7.2e-28, Sum P(3) = 7.2e-28
Identities = 46/62 (74%), Positives = 52/62 (83%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+TH GV
Sbjct: 23 YRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGV 82
Query: 144 LE 145
LE
Sbjct: 83 LE 84
Score = 82 (33.9 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 146 LDGKRKKKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 189
LDGK+K VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 235 LDGKKKG---VEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
Score = 40 (19.1 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 410 EPSG-FVAFHGTGNRLDGKRKK 430
E G FVAF G G L K +K
Sbjct: 285 EAGGRFVAFSGEGQSLRKKGRK 306
>MGI|MGI:109353 [details] [associations]
symbol:Ufd1l "ubiquitin fusion degradation 1 like"
species:10090 "Mus musculus" [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0032403 "protein complex
binding" evidence=ISO] InterPro:IPR004854 Pfam:PF03152
UniPathway:UPA00144 MGI:MGI:109353 GO:GO:0005829 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 EMBL:CH466521 eggNOG:COG5140
GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737 KO:K14016
PANTHER:PTHR12555 CTD:7353 HOVERGEN:HBG001266 OrthoDB:EOG4H9XKW
EMBL:U64445 EMBL:AK147138 EMBL:AK169062 EMBL:BC006630
IPI:IPI00656165 RefSeq:NP_035802.3 UniGene:Mm.237594
ProteinModelPortal:P70362 SMR:P70362 STRING:P70362
PhosphoSite:P70362 REPRODUCTION-2DPAGE:P70362 PaxDb:P70362
PRIDE:P70362 Ensembl:ENSMUST00000005394 Ensembl:ENSMUST00000115578
GeneID:22230 KEGG:mmu:22230 InParanoid:Q923C4 OMA:IRNSRPQ
NextBio:302271 Bgee:P70362 CleanEx:MM_UFD1L Genevestigator:P70362
GermOnline:ENSMUSG00000005262 Uniprot:P70362
Length = 307
Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
Identities = 178/279 (63%), Positives = 212/279 (75%)
Query: 198 FGFNMFPD-IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNI 251
F FNMF IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 252 CYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVAT 311
YPMLFKLTN+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 121
Query: 312 FSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVT 371
+SKFQPQ+ DFLDITNPKAVLEN LRNFACLT+GD+IAINYN KIYEL V+ETKP AV+
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVS 181
Query: 372 IIECDMNVDFAPPVGYTEPEKVKEKEE--DNMIDPVDLMPEPSGFVAFHGTGNRLDGKRK 429
IIECDMNVDF P+GY EPE+ + EE + D E GF AF G+GNRLDGK+K
Sbjct: 182 IIECDMNVDFDAPLGYKEPERPVQHEESIEGEADHSGYAGEV-GFRAFSGSGNRLDGKKK 240
Query: 430 KKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 467
VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 241 G---VEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
Score = 305 (112.4 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 62/87 (71%), Positives = 70/87 (80%)
Query: 5 IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLT 59
IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLT
Sbjct: 11 IPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLT 70
Query: 60 NQKMGRITHSGVLEFVADEGKVYLPYW 86
N+ R+TH GVLEFVADEG YLP+W
Sbjct: 71 NKNSDRMTHCGVLEFVADEGICYLPHW 97
Score = 233 (87.1 bits), Expect = 9.2e-28, Sum P(3) = 9.2e-28
Identities = 46/62 (74%), Positives = 52/62 (83%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+TH GV
Sbjct: 23 YRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGV 82
Query: 144 LE 145
LE
Sbjct: 83 LE 84
Score = 82 (33.9 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 146 LDGKRKKKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 189
LDGK+K VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 235 LDGKKKG---VEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
Score = 39 (18.8 bits), Expect = 1.8e-36, Sum P(3) = 1.8e-36
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 410 EPSG-FVAFHGTGNRLDGKRKK 430
E G F+AF G G L K +K
Sbjct: 285 EAGGRFIAFSGEGQSLRKKGRK 306
>UNIPROTKB|F1RK61 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737 GO:GO:0006511
GeneTree:ENSGT00390000002408 PANTHER:PTHR12555 OMA:IRNSRPQ
EMBL:CU468637 EMBL:CU618331 Ensembl:ENSSSCT00000011082
Uniprot:F1RK61
Length = 307
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 178/279 (63%), Positives = 212/279 (75%)
Query: 198 FGFNMFPD-IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNI 251
F FNMF IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 252 CYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVAT 311
YPMLFKLTN+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 121
Query: 312 FSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVT 371
+SKFQPQ+ DFLDITNPKAVLEN LRNFACLT+GD+IAINYN KIYEL V+ETKP AV+
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVS 181
Query: 372 IIECDMNVDFAPPVGYTEPEKVKEKEE--DNMIDPVDLMPEPSGFVAFHGTGNRLDGKRK 429
IIECDMNVDF P+GY EPE+ + EE + D E GF AF G+GNRLDGK+K
Sbjct: 182 IIECDMNVDFDAPLGYKEPERQIQHEESAEGEADHGGYAGE-LGFRAFSGSGNRLDGKKK 240
Query: 430 KKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 467
VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 241 G---VEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
Score = 305 (112.4 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 62/87 (71%), Positives = 70/87 (80%)
Query: 5 IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLT 59
IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLT
Sbjct: 11 IPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLT 70
Query: 60 NQKMGRITHSGVLEFVADEGKVYLPYW 86
N+ R+TH GVLEFVADEG YLP+W
Sbjct: 71 NKNSDRMTHCGVLEFVADEGICYLPHW 97
Score = 233 (87.1 bits), Expect = 7.2e-28, Sum P(3) = 7.2e-28
Identities = 46/62 (74%), Positives = 52/62 (83%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+TH GV
Sbjct: 23 YRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGV 82
Query: 144 LE 145
LE
Sbjct: 83 LE 84
Score = 82 (33.9 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 146 LDGKRKKKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 189
LDGK+K VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 235 LDGKKKG---VEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 276
Score = 40 (19.1 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 410 EPSG-FVAFHGTGNRLDGKRKK 430
E G FVAF G G L K +K
Sbjct: 285 EAGGRFVAFSGEGQSLRKKGRK 306
>ZFIN|ZDB-GENE-040718-150 [details] [associations]
symbol:ufd1l "ubiquitin fusion degradation 1-like"
species:7955 "Danio rerio" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0042221 "response to chemical
stimulus" evidence=IDA] InterPro:IPR004854 Pfam:PF03152
ZFIN:ZDB-GENE-040718-150 GO:GO:0042221 GO:GO:0006511 EMBL:BX323451
GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737 KO:K14016
PANTHER:PTHR12555 CTD:7353 HOVERGEN:HBG001266 OMA:IRNSRPQ
EMBL:FP085395 EMBL:BC076020 EMBL:BC153586 EMBL:AY648824
IPI:IPI00489675 RefSeq:NP_001002451.1 UniGene:Dr.79033 SMR:Q6DRD5
STRING:Q6DRD5 Ensembl:ENSDART00000034968 GeneID:436724
KEGG:dre:436724 InParanoid:Q6DRD5 NextBio:20831165 Uniprot:Q6DRD5
Length = 308
Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
Identities = 173/279 (62%), Positives = 212/279 (75%)
Query: 198 FGFNMF-PDIPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNI 251
F FNMF P + R F NR Y+C+SVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFEPHVGRVFQNRFSTQYRCYSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 252 CYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVAT 311
YPMLFKLTN+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRMTHCGVLEFVADEGFCYLPHWMMQNLLLEEGGLVQVESVNLMVAT 121
Query: 312 FSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVT 371
+SKFQPQ+ DFLDITNPKAVLEN LRNFACLT+GD+IAINYN KIYEL V+ETKP AV+
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVS 181
Query: 372 IIECDMNVDFAPPVGYTEPEK-VKEKEE--DNMIDPVDLMPEPSGFVAFHGTGNRLDGKR 428
IIECDMNVDF P+GY EPE+ ++ EE + DP + + GF AF G+GNRLDGK+
Sbjct: 182 IIECDMNVDFDAPLGYKEPERHMQHPEEPAEEETDPSNYDMD-LGFRAFTGSGNRLDGKK 240
Query: 429 KKKDTVETGGTPTK-REYQRGIPHYDYEPNTLVFLRNIK 466
K +E P + +RGIP+Y+++ + F+RN +
Sbjct: 241 KG---IEPSPAPLDPSDIKRGIPNYEFKVGRITFIRNAR 276
Score = 300 (110.7 bits), Expect = 2.7e-35, Sum P(3) = 2.7e-35
Identities = 62/92 (67%), Positives = 72/92 (78%)
Query: 1 MF-PDIPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPM 54
MF P + R F NR Y+C+SVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPM
Sbjct: 6 MFEPHVGRVFQNRFSTQYRCYSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPM 65
Query: 55 LFKLTNQKMGRITHSGVLEFVADEGKVYLPYW 86
LFKLTN+ R+TH GVLEFVADEG YLP+W
Sbjct: 66 LFKLTNKNSDRMTHCGVLEFVADEGFCYLPHW 97
Score = 230 (86.0 bits), Expect = 6.6e-27, Sum P(3) = 6.6e-27
Identities = 45/62 (72%), Positives = 52/62 (83%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y C+SVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+TH GV
Sbjct: 23 YRCYSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGV 82
Query: 144 LE 145
LE
Sbjct: 83 LE 84
Score = 71 (30.1 bits), Expect = 2.7e-35, Sum P(3) = 2.7e-35
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 139 THSGVLELDGKRKKKDTVETGGTPTK-REYQRGIPHYDYEPNTLVFLRNIK 188
T SG LDGK+K +E P + +RGIP+Y+++ + F+RN +
Sbjct: 230 TGSGN-RLDGKKKG---IEPSPAPLDPSDIKRGIPNYEFKVGRITFIRNAR 276
Score = 45 (20.9 bits), Expect = 2.7e-35, Sum P(3) = 2.7e-35
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 406 DLMPEPSGFVAFHGTGNRLDGKRKK 430
DL S F+AF G G L K +K
Sbjct: 283 DLDETVSNFIAFSGEGQSLRKKGRK 307
>UNIPROTKB|F1PAI5 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR004854 Pfam:PF03152
GO:GO:0006511 GeneTree:ENSGT00390000002408 PANTHER:PTHR12555
OMA:IRNSRPQ EMBL:AAEX03014865 EMBL:AAEX03014866
Ensembl:ENSCAFT00000023194 Uniprot:F1PAI5
Length = 310
Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
Identities = 178/283 (62%), Positives = 212/283 (74%)
Query: 198 FGFNMFPD-IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNI 251
F FNMF IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 1 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 60
Query: 252 CYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYW-MMRNLLLDEGELVNIESVSLPVA 310
YPMLFKLTN+ R+TH GVLEFVADEG YLP+W MM+NLLL+EG LV +ESV+L VA
Sbjct: 61 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWWMMQNLLLEEGGLVQVESVNLQVA 120
Query: 311 TFSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAV 370
T+SKFQPQ+ DFLDITNPKAVLEN LRNFACLT+GD+IAINYN KIYEL V+ETKP AV
Sbjct: 121 TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV 180
Query: 371 TIIECDMN---VDFAPPVGYTEPEKVKEKEE--DNMIDPVDLMPEPSGFVAFHGTGNRLD 425
+IIECDMN VDF P+GY EPE+ + EE + D E GF AF G+GNRLD
Sbjct: 181 SIIECDMNGPKVDFDAPLGYKEPERQVQHEESAEGEADHSGYAGE-LGFRAFSGSGNRLD 239
Query: 426 GKRKKKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 467
GK+K VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 240 GKKKG---VEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 279
Score = 305 (112.4 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 62/87 (71%), Positives = 70/87 (80%)
Query: 5 IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLT 59
IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLT
Sbjct: 10 IPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLT 69
Query: 60 NQKMGRITHSGVLEFVADEGKVYLPYW 86
N+ R+TH GVLEFVADEG YLP+W
Sbjct: 70 NKNSDRMTHCGVLEFVADEGICYLPHW 96
Score = 233 (87.1 bits), Expect = 7.2e-28, Sum P(3) = 7.2e-28
Identities = 46/62 (74%), Positives = 52/62 (83%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+TH GV
Sbjct: 22 YRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGV 81
Query: 144 LE 145
LE
Sbjct: 82 LE 83
Score = 82 (33.9 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 146 LDGKRKKKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 189
LDGK+K VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 238 LDGKKKG---VEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 279
Score = 40 (19.1 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 410 EPSG-FVAFHGTGNRLDGKRKK 430
E G FVAF G G L K +K
Sbjct: 288 EAGGRFVAFSGEGQSLRKKGRK 309
>UNIPROTKB|A6NJ11 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511 EMBL:AC000087
HOGENOM:HOG000212737 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 HOVERGEN:HBG001266 ChiTaRS:UFD1L IPI:IPI00654779
ProteinModelPortal:A6NJ11 SMR:A6NJ11 STRING:A6NJ11 PRIDE:A6NJ11
Ensembl:ENST00000360834 ArrayExpress:A6NJ11 Bgee:A6NJ11
Uniprot:A6NJ11
Length = 296
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 168/279 (60%), Positives = 201/279 (72%)
Query: 198 FGFNMFPD-IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNI 251
F FNMF IPR F NR Y+CFSVSM G N+R DVE+GGK +RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGK-----------SRLNI 50
Query: 252 CYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVAT 311
YPMLFKLTN+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VAT
Sbjct: 51 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 110
Query: 312 FSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVT 371
+SKFQPQ+ DFLDITNPKAVLEN LRNFACLT+GD+IAINYN KIYEL V+ETKP AV+
Sbjct: 111 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVS 170
Query: 372 IIECDMNVDFAPPVGYTEPEKVKEKEE--DNMIDPVDLMPEPSGFVAFHGTGNRLDGKRK 429
IIECDMNVDF P+GY EPE+ + EE + D E GF AF G+GNRLDGK+K
Sbjct: 171 IIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHSGYAGE-LGFRAFSGSGNRLDGKKK 229
Query: 430 KKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 467
VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 230 G---VEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 265
Score = 226 (84.6 bits), Expect = 4.5e-27, Sum P(3) = 4.5e-27
Identities = 52/87 (59%), Positives = 59/87 (67%)
Query: 5 IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLT 59
IPR F NR Y+CFSVSM G N+R DVE+GGK +RLNI YPMLFKLT
Sbjct: 11 IPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGK-----------SRLNITYPMLFKLT 59
Query: 60 NQKMGRITHSGVLEFVADEGKVYLPYW 86
N+ R+TH GVLEFVADEG YLP+W
Sbjct: 60 NKNSDRMTHCGVLEFVADEGICYLPHW 86
Score = 154 (59.3 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
Identities = 36/62 (58%), Positives = 41/62 (66%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y CFSVSM G N+R DVE+GGK +RLNI YPMLFKLTN+ R+TH GV
Sbjct: 23 YRCFSVSMLAGPNDRSDVEKGGK-----------SRLNITYPMLFKLTNKNSDRMTHCGV 71
Query: 144 LE 145
LE
Sbjct: 72 LE 73
Score = 82 (33.9 bits), Expect = 4.5e-27, Sum P(3) = 4.5e-27
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 146 LDGKRKKKDTVETGGTPTKR-EYQRGIPHYDYEPNTLVFLRNIKP 189
LDGK+K VE +P K + +RGIP+Y+++ + F+RN +P
Sbjct: 224 LDGKKKG---VEPSPSPIKPGDIKRGIPNYEFKLGKITFIRNSRP 265
Score = 40 (19.1 bits), Expect = 4.5e-27, Sum P(3) = 4.5e-27
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 410 EPSG-FVAFHGTGNRLDGKRKK 430
E G FVAF G G L K +K
Sbjct: 274 EAGGRFVAFSGEGQSLRKKGRK 295
>UNIPROTKB|Q0P568 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation 1 like"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737
GO:GO:0006511 eggNOG:COG5140 GeneTree:ENSGT00390000002408
HOGENOM:HOG000212737 KO:K14016 PANTHER:PTHR12555 CTD:7353
HOVERGEN:HBG001266 OrthoDB:EOG4H9XKW EMBL:DAAA02045760
EMBL:BC120441 IPI:IPI00907531 RefSeq:NP_001068768.1
UniGene:Bt.11225 SMR:Q0P568 STRING:Q0P568
Ensembl:ENSBTAT00000056937 GeneID:507124 KEGG:bta:507124
OMA:AISIIEC NextBio:20867911 Uniprot:Q0P568
Length = 231
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 150/207 (72%), Positives = 171/207 (82%)
Query: 198 FGFNMFPD-IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNI 251
F FNMF IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 252 CYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVAT 311
YPMLFKLTN+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VAT
Sbjct: 62 TYPMLFKLTNKNSDRVTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 121
Query: 312 FSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVT 371
+SKFQPQ+ DFLDITNPKAVLEN LRNFACLT+GD+IAINYN KIYEL V+ETKP AV+
Sbjct: 122 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVS 181
Query: 372 IIECDMNVDFAPPVGYTEPEKVKEKEE 398
IIECDMNVDF P+GY EPE+ + EE
Sbjct: 182 IIECDMNVDFDAPLGYKEPERQAQHEE 208
Score = 307 (113.1 bits), Expect = 3.6e-27, P = 3.6e-27
Identities = 62/87 (71%), Positives = 70/87 (80%)
Query: 5 IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLT 59
IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLT
Sbjct: 11 IPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLT 70
Query: 60 NQKMGRITHSGVLEFVADEGKVYLPYW 86
N+ R+TH GVLEFVADEG YLP+W
Sbjct: 71 NKNSDRVTHCGVLEFVADEGICYLPHW 97
Score = 235 (87.8 bits), Expect = 4.3e-19, P = 4.3e-19
Identities = 46/62 (74%), Positives = 52/62 (83%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+TH GV
Sbjct: 23 YRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRVTHCGV 82
Query: 144 LE 145
LE
Sbjct: 83 LE 84
>UNIPROTKB|C9IZG3 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511 EMBL:AC000087
HOGENOM:HOG000212737 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI00654779
ProteinModelPortal:C9IZG3 SMR:C9IZG3 STRING:C9IZG3
Ensembl:ENST00000421968 UCSC:uc010grq.2 ArrayExpress:C9IZG3
Bgee:C9IZG3 Uniprot:C9IZG3
Length = 190
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 138/200 (69%), Positives = 156/200 (78%)
Query: 198 FGFNMFPD-IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNI 251
F FNMF IPR F NR Y+CFSVSM G N+R DVE+GGK +RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGK-----------SRLNI 50
Query: 252 CYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVAT 311
YPMLFKLTN+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VAT
Sbjct: 51 TYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVAT 110
Query: 312 FSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVT 371
+SKFQPQ+ DFLDITNPKAVLEN LRNFACLT+GD+IAINYN KIYEL V+ETKP AV+
Sbjct: 111 YSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVS 170
Query: 372 IIECDMNVDFAPPVGYTEPE 391
IIECDMNVDF P+GY EPE
Sbjct: 171 IIECDMNVDFDAPLGYKEPE 190
Score = 226 (84.6 bits), Expect = 4.1e-18, P = 4.1e-18
Identities = 52/87 (59%), Positives = 59/87 (67%)
Query: 5 IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLT 59
IPR F NR Y+CFSVSM G N+R DVE+GGK +RLNI YPMLFKLT
Sbjct: 11 IPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGK-----------SRLNITYPMLFKLT 59
Query: 60 NQKMGRITHSGVLEFVADEGKVYLPYW 86
N+ R+TH GVLEFVADEG YLP+W
Sbjct: 60 NKNSDRMTHCGVLEFVADEGICYLPHW 86
Score = 154 (59.3 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 36/62 (58%), Positives = 41/62 (66%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y CFSVSM G N+R DVE+GGK +RLNI YPMLFKLTN+ R+TH GV
Sbjct: 23 YRCFSVSMLAGPNDRSDVEKGGK-----------SRLNITYPMLFKLTNKNSDRMTHCGV 71
Query: 144 LE 145
LE
Sbjct: 72 LE 73
>TAIR|locus:2050054 [details] [associations]
symbol:UFD1 "AT2G21270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005829
EMBL:CP002685 EMBL:AC006841 GO:GO:0006511 eggNOG:COG5140
HOGENOM:HOG000212737 KO:K14016 PANTHER:PTHR12555 EMBL:AK317375
IPI:IPI00846355 RefSeq:NP_001077933.1 UniGene:At.39582
ProteinModelPortal:A8MQW3 SMR:A8MQW3 PaxDb:A8MQW3 PRIDE:A8MQW3
EnsemblPlants:AT2G21270.3 GeneID:816666 KEGG:ath:AT2G21270
TAIR:At2g21270 OMA:AERTSHC PhylomeDB:A8MQW3 ProtClustDB:CLSN2688302
Genevestigator:A8MQW3 Uniprot:A8MQW3
Length = 340
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 117/222 (52%), Positives = 156/222 (70%)
Query: 210 FNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITH 269
F +SY+C+ S ++ +E G KIIMPPSAL++L L+I YPMLF+L N + R+TH
Sbjct: 34 FEQSYRCYPASFI---DKPQLESGDKIIMPPSALDRLASLHIDYPMLFELRNAGIERVTH 90
Query: 270 SGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPK 329
GVLEF+A+EG +Y+PYWMM+NLLL EG++V + +V+LP T+ K QP T DFLDI+NPK
Sbjct: 91 CGVLEFIAEEGMIYMPYWMMQNLLLQEGDIVRVRNVTLPKGTYVKLQPHTTDFLDISNPK 150
Query: 330 AVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVTIIECDMNVDFAPPVGYTE 389
A+LE LRN++CLTSGD I + YN+K Y + ++ETKP NA++IIE D VDFAPP+ Y E
Sbjct: 151 AILETALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEVDFAPPLDYKE 210
Query: 390 PEKVKE----KEEDNMIDPVDLMPEPSGFVAFHGTGNRLDGK 427
PE+ K + VD PEP F F G+G RLDG+
Sbjct: 211 PERPTAPSAAKGPAKAEEVVD-EPEPK-FNPFTGSGRRLDGR 250
Score = 229 (85.7 bits), Expect = 5.6e-17, P = 5.6e-17
Identities = 45/109 (41%), Positives = 67/109 (61%)
Query: 9 FNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITH 68
F +SY+C+ S ++ +E G KIIMPPSAL++L L+I YPMLF+L N + R+TH
Sbjct: 34 FEQSYRCYPASFI---DKPQLESGDKIIMPPSALDRLASLHIDYPMLFELRNAGIERVTH 90
Query: 69 SGVLEFVADEGKVYLPYWCFSVSMFPGNEREDVERGGKIIMPPSALEQL 117
GVLEF+A+EG +Y+PYW + + D+ R + +P +L
Sbjct: 91 CGVLEFIAEEGMIYMPYWMMQNLLL---QEGDIVRVRNVTLPKGTYVKL 136
Score = 149 (57.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 31/61 (50%), Positives = 41/61 (67%)
Query: 85 YWCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVL 144
Y C+ S ++ +E G KIIMPPSAL++L L+I YPMLF+L N + R+TH GVL
Sbjct: 38 YRCYPASFI---DKPQLESGDKIIMPPSALDRLASLHIDYPMLFELRNAGIERVTHCGVL 94
Query: 145 E 145
E
Sbjct: 95 E 95
>TAIR|locus:2066122 [details] [associations]
symbol:AT2G29070 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] InterPro:IPR004854
Pfam:PF03152 EMBL:CP002685 GO:GO:0006511 HOGENOM:HOG000212737
KO:K14016 OMA:IDKAHLE PANTHER:PTHR12555 EMBL:BT011682 EMBL:BT012260
IPI:IPI00519577 RefSeq:NP_973557.1 UniGene:At.43163
ProteinModelPortal:Q6NLS0 SMR:Q6NLS0 EnsemblPlants:AT2G29070.2
GeneID:817455 KEGG:ath:AT2G29070 TAIR:At2g29070 InParanoid:Q6NLS0
PhylomeDB:Q6NLS0 ProtClustDB:CLSN2918124 Genevestigator:Q6NLS0
Uniprot:Q6NLS0
Length = 312
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 112/232 (48%), Positives = 160/232 (68%)
Query: 210 FNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITH 269
F + Y+C+ V+ ++ +E+G KIIMPPSAL++L L+I YPMLF+L+N + + +H
Sbjct: 8 FEQCYRCYPVTFI---DKAHLEKGDKIIMPPSALDRLASLHIEYPMLFQLSNVSVEKTSH 64
Query: 270 SGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPK 329
GVLEF ADEG VYLPYWMM+N+ L+EG+++ ++++SL T+ K QP T DFLDI+NPK
Sbjct: 65 CGVLEFTADEGLVYLPYWMMQNMSLEEGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPK 124
Query: 330 AVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVTIIECDMNVDFAPPVGYTE 389
A+LE LR+++CLT+GD I + YN+K Y + V+E KP +AV+IIE D VDFAPP+ Y E
Sbjct: 125 AILETTLRSYSCLTTGDTIMVPYNNKQYYINVVEAKPSSAVSIIETDCEVDFAPPLDYKE 184
Query: 390 PEKVKEKEEDNMIDPVDLMPE--PSG----FVAFHGTGNRLDGKRKKKDTVE 435
PEK ++ N P+ + E P+ F F G+G RLDGK + + E
Sbjct: 185 PEKPQKLTPSNK-RPLQVKEEEEPASKVPKFTPFTGSGKRLDGKAQTQTEPE 235
Score = 220 (82.5 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 43/89 (48%), Positives = 63/89 (70%)
Query: 9 FNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITH 68
F + Y+C+ V+ ++ +E+G KIIMPPSAL++L L+I YPMLF+L+N + + +H
Sbjct: 8 FEQCYRCYPVTFI---DKAHLEKGDKIIMPPSALDRLASLHIEYPMLFQLSNVSVEKTSH 64
Query: 69 SGVLEFVADEGKVYLPYWCF-SVSMFPGN 96
GVLEF ADEG VYLPYW ++S+ G+
Sbjct: 65 CGVLEFTADEGLVYLPYWMMQNMSLEEGD 93
Score = 143 (55.4 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 29/61 (47%), Positives = 43/61 (70%)
Query: 85 YWCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVL 144
Y C+ V+ ++ +E+G KIIMPPSAL++L L+I YPMLF+L+N + + +H GVL
Sbjct: 12 YRCYPVTFI---DKAHLEKGDKIIMPPSALDRLASLHIEYPMLFQLSNVSVEKTSHCGVL 68
Query: 145 E 145
E
Sbjct: 69 E 69
>TAIR|locus:2120247 [details] [associations]
symbol:AT4G38930 "AT4G38930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA;ISS] InterPro:IPR004854
Pfam:PF03152 EMBL:CP002687 GO:GO:0006511 EMBL:AL035679
EMBL:AL161594 HOGENOM:HOG000212737 KO:K14016 PANTHER:PTHR12555
OMA:NQTNEAS IPI:IPI00528563 PIR:T06053 RefSeq:NP_974709.1
UniGene:At.2837 UniGene:At.67000 ProteinModelPortal:Q9SVK0
SMR:Q9SVK0 PRIDE:Q9SVK0 DNASU:830048 EnsemblPlants:AT4G38930.2
GeneID:830048 KEGG:ath:AT4G38930 TAIR:At4g38930 InParanoid:Q9SVK0
PhylomeDB:Q9SVK0 ProtClustDB:CLSN2917686 ArrayExpress:Q9SVK0
Genevestigator:Q9SVK0 Uniprot:Q9SVK0
Length = 315
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 108/224 (48%), Positives = 149/224 (66%)
Query: 210 FNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITH 269
F ++Y+C+ S ++ +E G KIIMPPSAL++L L I YPMLF+L N +H
Sbjct: 13 FEQTYRCYPSSFI---DKPQIESGDKIIMPPSALDRLASLQIDYPMLFELRNASTDSFSH 69
Query: 270 SGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPK 329
GVLEF+A+EG +Y+PYWMM+NLLL EG++V + +V+LP T+ K QP T DFLDI NPK
Sbjct: 70 CGVLEFIAEEGVIYIPYWMMQNLLLQEGDMVRVRNVTLPKGTYVKLQPHTTDFLDIANPK 129
Query: 330 AVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVTIIECDMNVDFAPPVGYTE 389
A+LE LRN++CLT GD I + YN+K Y + ++E KP N ++IIE D VDFAPP+ Y E
Sbjct: 130 AILETALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVDFAPPLDYKE 189
Query: 390 PEK------VKEKEEDNMIDPVDLMPEPSGFVAFHGTGNRLDGK 427
PE+ K + + +D + P+ F F G+G RLDG+
Sbjct: 190 PERPVAPAPAKGEAKAKEVDVAEAEPK---FNPFTGSGRRLDGR 230
Score = 210 (79.0 bits), Expect = 7.0e-15, P = 7.0e-15
Identities = 38/78 (48%), Positives = 53/78 (67%)
Query: 9 FNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITH 68
F ++Y+C+ S ++ +E G KIIMPPSAL++L L I YPMLF+L N +H
Sbjct: 13 FEQTYRCYPSSFI---DKPQIESGDKIIMPPSALDRLASLQIDYPMLFELRNASTDSFSH 69
Query: 69 SGVLEFVADEGKVYLPYW 86
GVLEF+A+EG +Y+PYW
Sbjct: 70 CGVLEFIAEEGVIYIPYW 87
Score = 136 (52.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 29/61 (47%), Positives = 37/61 (60%)
Query: 85 YWCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVL 144
Y C+ S ++ +E G KIIMPPSAL++L L I YPMLF+L N +H GVL
Sbjct: 17 YRCYPSSFI---DKPQIESGDKIIMPPSALDRLASLQIDYPMLFELRNASTDSFSHCGVL 73
Query: 145 E 145
E
Sbjct: 74 E 74
>UNIPROTKB|G4NAF1 [details] [associations]
symbol:MGG_03175 "Ubiquitin fusion degradation protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511
EMBL:CM001234 KO:K14016 PANTHER:PTHR12555 RefSeq:XP_003716815.1
ProteinModelPortal:G4NAF1 SMR:G4NAF1 EnsemblFungi:MGG_03175T0
GeneID:2677027 KEGG:mgr:MGG_03175 Uniprot:G4NAF1
Length = 379
Score = 513 (185.6 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 96/192 (50%), Positives = 137/192 (71%)
Query: 204 PDIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQK 263
P + R F+ Y+C+ + M PG ER ++ G KII+PPSALE++++L++ +P+L +L N +
Sbjct: 12 PIVQR-FDEYYRCYPMIMVPGAERPELNHGSKIILPPSALEKVSKLHVQWPLLMELINGE 70
Query: 264 MGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFL 323
+ THSGVLEFVA+EG+ YLP WMM+ L LD G+++ I+S SL +A K QPQ+ FL
Sbjct: 71 NDKHTHSGVLEFVAEEGRAYLPQWMMQTLQLDVGDMIQIKSTSLELARMVKLQPQSAKFL 130
Query: 324 DITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNA---VTIIECDMNVD 380
DI++P+AVLE RNFA LT GD+ + YN +YE+ VL+ KP V++IE D++VD
Sbjct: 131 DISDPRAVLEKAFRNFATLTKGDVFSFEYNDDVYEMAVLDVKPETTKMGVSMIETDVSVD 190
Query: 381 FAPPVGYTEPEK 392
FA PVGY EPE+
Sbjct: 191 FAAPVGYVEPER 202
Score = 228 (85.3 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 41/84 (48%), Positives = 62/84 (73%)
Query: 3 PDIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQK 62
P + R F+ Y+C+ + M PG ER ++ G KII+PPSALE++++L++ +P+L +L N +
Sbjct: 12 PIVQR-FDEYYRCYPMIMVPGAERPELNHGSKIILPPSALEKVSKLHVQWPLLMELINGE 70
Query: 63 MGRITHSGVLEFVADEGKVYLPYW 86
+ THSGVLEFVA+EG+ YLP W
Sbjct: 71 NDKHTHSGVLEFVAEEGRAYLPQW 94
Score = 159 (61.0 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 29/61 (47%), Positives = 45/61 (73%)
Query: 85 YWCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVL 144
Y C+ + M PG ER ++ G KII+PPSALE++++L++ +P+L +L N + + THSGVL
Sbjct: 21 YRCYPMIMVPGAERPELNHGSKIILPPSALEKVSKLHVQWPLLMELINGENDKHTHSGVL 80
Query: 145 E 145
E
Sbjct: 81 E 81
Score = 46 (21.3 bits), Expect = 2.9e-52, Sum P(2) = 2.9e-52
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 417 FHGTGNRLDGKRKKKDTVETGGTPTK 442
F G GN++ K+ KD GTP K
Sbjct: 253 FMGEGNKIGSKKGSKD-----GTPVK 273
Score = 37 (18.1 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 419 GTGNRLDGK 427
G G RLDGK
Sbjct: 370 GEGRRLDGK 378
>SGD|S000003280 [details] [associations]
symbol:UFD1 "Substrate-recruiting cofactor of the
Cdc48p-Npl4p-Ufd1p segregase" species:4932 "Saccharomyces
cerevisiae" [GO:0071712 "ER-associated misfolded protein catabolic
process" evidence=IMP] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0030433 "ER-associated protein
catabolic process" evidence=IMP] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IMP] [GO:1900182 "positive
regulation of protein localization to nucleus" evidence=IMP]
[GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0043130 "ubiquitin binding" evidence=IDA] [GO:0031593
"polyubiquitin binding" evidence=IDA] [GO:0071629
"cytoplasm-associated proteasomal ubiquitin-dependent protein
catabolic process" evidence=IMP] InterPro:IPR004854 Pfam:PF03152
SGD:S000003280 GO:GO:0005634 EMBL:BK006941 GO:GO:0031593
GO:GO:0034098 GO:GO:0030970 GO:GO:0071629 GO:GO:0071712
GO:GO:1900182 EMBL:DQ115391 EMBL:Z72833 eggNOG:COG5140
GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737 KO:K14016
PANTHER:PTHR12555 OrthoDB:EOG4BP4N3 EMBL:U22153 EMBL:U17264
EMBL:AY692806 PIR:S59814 RefSeq:NP_011562.1 PDB:1ZC1 PDBsum:1ZC1
ProteinModelPortal:P53044 SMR:P53044 DIP:DIP-1476N IntAct:P53044
MINT:MINT-393265 STRING:P53044 PaxDb:P53044 PeptideAtlas:P53044
EnsemblFungi:YGR048W GeneID:852939 KEGG:sce:YGR048W CYGD:YGR048w
OMA:RCYPIAM EvolutionaryTrace:P53044 NextBio:972678
Genevestigator:P53044 GermOnline:YGR048W Uniprot:P53044
Length = 361
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 102/206 (49%), Positives = 142/206 (68%)
Query: 199 GFNMFPDIPRPFNRSYKCFSVSMFPGNER-EDVERGGKIIMPPSALEQLTRLNICYPMLF 257
G N F ++P+ F ++C+ ++M R +D GGKI +PPSAL +L+ LNI YPMLF
Sbjct: 10 GGNGFVNMPQTFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLF 69
Query: 258 KLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQP 317
KLT + GR+TH GVLEF+A+EG+VYLP WMM L + G L+ I S +P+ F K +P
Sbjct: 70 KLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEP 129
Query: 318 QTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKP---GNAVTIIE 374
Q+ DFLDI++PKAVLEN LRNF+ LT D+I I+YN K +++ +LE KP ++ +IE
Sbjct: 130 QSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIE 189
Query: 375 CDMNVDFAPPVGYTEPE-KVKEKEED 399
D+ DFAPPVGY EP+ K + ++D
Sbjct: 190 TDLVTDFAPPVGYVEPDYKALKAQQD 215
Score = 257 (95.5 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 52/122 (42%), Positives = 78/122 (63%)
Query: 2 FPDIPRPFNRSYKCFSVSMFPGNER-EDVERGGKIIMPPSALEQLTRLNICYPMLFKLTN 60
F ++P+ F ++C+ ++M R +D GGKI +PPSAL +L+ LNI YPMLFKLT
Sbjct: 14 FVNMPQTFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTA 73
Query: 61 QKMGRITHSGVLEFVADEGKVYLPYWCF-SVSMFPGN----EREDVERGGKIIMPPSALE 115
+ GR+TH GVLEF+A+EG+VYLP W ++ + PG+ DV G + + P +++
Sbjct: 74 NETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVD 133
Query: 116 QL 117
L
Sbjct: 134 FL 135
Score = 171 (65.3 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 39/84 (46%), Positives = 50/84 (59%)
Query: 69 SGVLEFVADEGKVYLP------YWCFSVSMFPGNER-EDVERGGKIIMPPSALEQLTRLN 121
SG F G V +P + C+ ++M R +D GGKI +PPSAL +L+ LN
Sbjct: 3 SGFSSFGGGNGFVNMPQTFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLN 62
Query: 122 ICYPMLFKLTNQKMGRITHSGVLE 145
I YPMLFKLT + GR+TH GVLE
Sbjct: 63 IRYPMLFKLTANETGRVTHGGVLE 86
>CGD|CAL0002326 [details] [associations]
symbol:orf19.5833 species:5476 "Candida albicans" [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0071629 "cytoplasm-associated proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:1900182 "positive
regulation of protein localization to nucleus" evidence=IEA]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=IEA] [GO:0071712 "ER-associated misfolded protein
catabolic process" evidence=IEA] [GO:0031593 "polyubiquitin
binding" evidence=IEA] InterPro:IPR004854 Pfam:PF03152
CGD:CAL0002326 GO:GO:0006511 EMBL:AACQ01000088 EMBL:AACQ01000087
eggNOG:COG5140 KO:K14016 PANTHER:PTHR12555 RefSeq:XP_715308.1
RefSeq:XP_715373.1 ProteinModelPortal:Q5A0H8 SMR:Q5A0H8
STRING:Q5A0H8 GeneID:3643035 GeneID:3643074 KEGG:cal:CaO19.13255
KEGG:cal:CaO19.5833 Uniprot:Q5A0H8
Length = 363
Score = 507 (183.5 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
Identities = 103/213 (48%), Positives = 139/213 (65%)
Query: 198 FGFNMFPDIPRPFNRSYKCFSVSMFPGNER-EDVERGGKIIMPPSALEQLTRLNICYPML 256
FG + FP F ++C+ ++M P R +D GGKI +PPSAL +LT L+I YPML
Sbjct: 14 FGSSGFPS--NKFEEYFRCYPIAMMPDLIRKDDANYGGKIFLPPSALNKLTMLHIRYPML 71
Query: 257 FKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQ 316
F++ N++ ++THSGVLEF+A+EG+ YLP WMM L L G L+ I + L + F K +
Sbjct: 72 FEIKNEQNEKLTHSGVLEFIAEEGRTYLPQWMMNTLELTPGSLIKITNCDLNLGKFVKIE 131
Query: 317 PQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNA---VTII 373
PQ+ DFLDI++PKAVLEN LR F+ LT D+I +NYN IY + VLE KP + + ++
Sbjct: 132 PQSVDFLDISDPKAVLENVLRKFSTLTVNDIIEVNYNDAIYGIRVLEVKPDSTSKGICVV 191
Query: 374 ECDMNVDFAPPVGYTEPE-KVKEKEEDNM-IDP 404
E D+ DFAP VGY EPE K K E + IDP
Sbjct: 192 ETDLETDFAPLVGYVEPEYKPKTVEPSSKPIDP 224
Score = 234 (87.4 bits), Expect = 5.2e-18, Sum P(2) = 5.2e-18
Identities = 44/97 (45%), Positives = 66/97 (68%)
Query: 2 FPDIPRPFNRSYKCFSVSMFPGNER-EDVERGGKIIMPPSALEQLTRLNICYPMLFKLTN 60
FP F ++C+ ++M P R +D GGKI +PPSAL +LT L+I YPMLF++ N
Sbjct: 19 FPS--NKFEEYFRCYPIAMMPDLIRKDDANYGGKIFLPPSALNKLTMLHIRYPMLFEIKN 76
Query: 61 QKMGRITHSGVLEFVADEGKVYLPYWCFS-VSMFPGN 96
++ ++THSGVLEF+A+EG+ YLP W + + + PG+
Sbjct: 77 EQNEKLTHSGVLEFIAEEGRTYLPQWMMNTLELTPGS 113
Score = 162 (62.1 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 31/60 (51%), Positives = 44/60 (73%)
Query: 87 CFSVSMFPGNER-EDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLE 145
C+ ++M P R +D GGKI +PPSAL +LT L+I YPMLF++ N++ ++THSGVLE
Sbjct: 30 CYPIAMMPDLIRKDDANYGGKIFLPPSALNKLTMLHIRYPMLFEIKNEQNEKLTHSGVLE 89
Score = 42 (19.8 bits), Expect = 5.2e-18, Sum P(2) = 5.2e-18
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 376 DMNVDFAPPVGYTEPEK--------VKEKEEDNMIDPVDLMPEPSGFVAFHGTGNRLDGK 427
D++ D APPV + PE V +E+ ID + E AF G+G L
Sbjct: 282 DLDPD-APPVPLSLPENQLFFGFPVVLPTQEE--IDE-ESKEELKKQQAFSGSGQSLRQS 337
Query: 428 RKKKD 432
+K+KD
Sbjct: 338 KKRKD 342
Score = 39 (18.8 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 402 IDPVDLMPEPSGFVAFHGTGNRLDGK 427
I+ L+ E F G+G +L GK
Sbjct: 240 INYAKLVAEAGKTTKFSGSGQKLSGK 265
>POMBASE|SPBC16A3.09c [details] [associations]
symbol:ufd1 "Cdc48-Ufd1-Npl4 complex subunit Ufd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISS]
[GO:0033554 "cellular response to stress" evidence=IEP] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=ISO]
InterPro:IPR004854 Pfam:PF03152 PomBase:SPBC16A3.09c GO:GO:0005829
GO:GO:0005634 GO:GO:0033554 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0030433 GO:GO:0034098 eggNOG:COG5140 HOGENOM:HOG000212737
KO:K14016 PANTHER:PTHR12555 EMBL:AJ005825 EMBL:AJ005824
EMBL:AF034137 PIR:T43554 PIR:T43667 RefSeq:NP_596780.1
ProteinModelPortal:O42915 SMR:O42915 STRING:O42915
EnsemblFungi:SPBC16A3.09c.1 GeneID:2539623 KEGG:spo:SPBC16A3.09c
OMA:ARRNITW OrthoDB:EOG4BP4N3 NextBio:20800779 Uniprot:O42915
Length = 342
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 101/233 (43%), Positives = 155/233 (66%)
Query: 205 DIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKM 264
++ + F+ Y+C+ V+M PG ER +V GGK+I+PPSALE+L+RLN+ YPMLF N+
Sbjct: 27 NVNQRFDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAA 86
Query: 265 GRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLD 324
+ TH GVLEF+A+EG+VYLPYWMM L L+ G+LV + + + ++ K QPQ+ +FLD
Sbjct: 87 EKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFLD 146
Query: 325 ITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNA---VTIIECDMNVDF 381
IT+ +AVLEN LRNF+ LT D+ I YN ++Y++ V++ +P ++ V+++E D+ VDF
Sbjct: 147 ITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVDF 206
Query: 382 APPVGYTEP-EKVKEKE----EDNMIDPV--DLMPEPSGFVAFHGTGNRLDGK 427
PP+GY E +K K++ + M+ + D + GTG +L+GK
Sbjct: 207 DPPIGYEESLQKNKQQNIAGVQGTMVTKIGYDELVRQGDSNLMKGTGTKLNGK 259
Score = 285 (105.4 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 53/119 (44%), Positives = 81/119 (68%)
Query: 4 DIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKM 63
++ + F+ Y+C+ V+M PG ER +V GGK+I+PPSALE+L+RLN+ YPMLF N+
Sbjct: 27 NVNQRFDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAA 86
Query: 64 GRITHSGVLEFVADEGKVYLPYWCFS-VSMFPGNE----REDVERGGKIIMPPSALEQL 117
+ TH GVLEF+A+EG+VYLPYW + +S+ PG+ D+ +G + + P ++ L
Sbjct: 87 EKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFL 145
Score = 192 (72.6 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 35/61 (57%), Positives = 45/61 (73%)
Query: 85 YWCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVL 144
Y C+ V+M PG ER +V GGK+I+PPSALE+L+RLN+ YPMLF N+ + TH GVL
Sbjct: 36 YRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAAEKKTHGGVL 95
Query: 145 E 145
E
Sbjct: 96 E 96
Score = 46 (21.3 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 17/54 (31%), Positives = 20/54 (37%)
Query: 386 GYTEPEKVKEKEEDNMIDPVDLMPEPSGFVAFHGTGNRLDGKRKKKDTVETGGT 439
GY P K EED+ DP F G G L RK T+ G +
Sbjct: 291 GY--PYKAPSIEEDSKKDP--------NLFKFEGAGTSLRASRKTNGTMGKGSS 334
>DICTYBASE|DDB_G0271122 [details] [associations]
symbol:ufd1 "ubiquitin fusion degradation protein
UFD1 family protein" species:44689 "Dictyostelium discoideum"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA;ISS] [GO:0005789 "endoplasmic reticulum membrane"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR004854 Pfam:PF03152 UniPathway:UPA00144
dictyBase:DDB_G0271122 GO:GO:0043161 GenomeReviews:CM000151_GR
EMBL:AAFI02000006 GO:GO:0006511 eggNOG:COG5140 KO:K14016
PANTHER:PTHR12555 RefSeq:XP_645814.1 HSSP:P53044
ProteinModelPortal:Q55BK0 SMR:Q55BK0 STRING:Q55BK0
EnsemblProtists:DDB0238023 GeneID:8617805 KEGG:ddi:DDB_G0271122
OMA:NQTNEAS Uniprot:Q55BK0
Length = 330
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 109/229 (47%), Positives = 149/229 (65%)
Query: 207 PRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGR 266
P + + +K F +S P E+ +E GGKI++PPSAL L+RLNI YPMLF+++N G+
Sbjct: 22 PGRYEQKFKAFPISFLP-KEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPISGK 80
Query: 267 ITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDIT 326
+H GVLEF+A+EG YLP WMM+NL L EGE ++I++ +L TF K QP+T +F+DI+
Sbjct: 81 KSHCGVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNFIDIS 140
Query: 327 NPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVTIIECDMNVDFAPPVG 386
NPKAVLEN LR FA LT D I I+YN+ Y L V+E KP NA++IIE D++VDFAPP+
Sbjct: 141 NPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAPPMD 200
Query: 387 YTEPEKVKEKEEDNMIDPVDLMPEPSGFVAFH--GTGNR-LDGKRKKKD 432
KE + P + PS + F T + + G +KKKD
Sbjct: 201 S------KEATSPSTSSPGSHVSGPSKGLTFGPASTSAKPIPGGKKKKD 243
Score = 224 (83.9 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 41/81 (50%), Positives = 57/81 (70%)
Query: 6 PRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGR 65
P + + +K F +S P E+ +E GGKI++PPSAL L+RLNI YPMLF+++N G+
Sbjct: 22 PGRYEQKFKAFPISFLP-KEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPISGK 80
Query: 66 ITHSGVLEFVADEGKVYLPYW 86
+H GVLEF+A+EG YLP W
Sbjct: 81 KSHCGVLEFIAEEGICYLPLW 101
Score = 161 (61.7 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 32/67 (47%), Positives = 45/67 (67%)
Query: 79 GKVYLPYWCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRI 138
G+ + F +S P E+ +E GGKI++PPSAL L+RLNI YPMLF+++N G+
Sbjct: 23 GRYEQKFKAFPISFLP-KEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPISGKK 81
Query: 139 THSGVLE 145
+H GVLE
Sbjct: 82 SHCGVLE 88
Score = 69 (29.3 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 364 TKPGNAVTIIECDMNVDFAPPVGYTEPEKVKEKEEDNMIDPVDLMPEPSGFVAFHGTGNR 423
+ PG+ V+ + F P +P +K++D D EP F AF GTG R
Sbjct: 210 SSPGSHVS--GPSKGLTFGPASTSAKPIPGGKKKKDESDSDSDSDDEPK-FKAFAGTGAR 266
Query: 424 LDGK 427
LDGK
Sbjct: 267 LDGK 270
>WB|WBGene00006733 [details] [associations]
symbol:ufd-1 species:6239 "Caenorhabditis elegans"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0008340 "determination of
adult lifespan" evidence=IMP] [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA
ATPase complex" evidence=IPI] [GO:0071712 "ER-associated misfolded
protein catabolic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0034098 GO:GO:0071712 EMBL:Z69635
PIR:T21108 RefSeq:NP_502348.1 ProteinModelPortal:Q19584 SMR:Q19584
DIP:DIP-26847N IntAct:Q19584 MINT:MINT-1079679 STRING:Q19584
PaxDb:Q19584 PRIDE:Q19584 EnsemblMetazoa:F19B6.2a GeneID:3565860
KEGG:cel:CELE_F19B6.2 UCSC:F19B6.2b CTD:3565860 WormBase:F19B6.2a
eggNOG:COG5140 GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737
InParanoid:Q19584 KO:K14016 OMA:IDKAHLE NextBio:958135
ArrayExpress:Q19584 PANTHER:PTHR12555 Uniprot:Q19584
Length = 342
Score = 471 (170.9 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
Identities = 106/226 (46%), Positives = 137/226 (60%)
Query: 229 DVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWM 288
++ GGKI++P SAL L + NI PMLFKLTN + R+TH GVLEF A EG+ LP WM
Sbjct: 43 EINYGGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWM 102
Query: 289 MRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMI 348
M+ L LD+G+ + IES +LP ATF+K +P + +FL+ITNPKAVLE LR +ACLT D I
Sbjct: 103 MQQLGLDDGDTIRIESATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRI 162
Query: 349 AINYNSKIYELCVLETKPGNAVTIIECDMNVDFAPPVGYTE-PEKV------KEKEED-N 400
+Y + E V++ KP N+V IIECD+N+DF PP GY E P +V K D +
Sbjct: 163 PTSYAGQTLEFLVVDLKPANSVCIIECDVNLDFDPPEGYVEQPRQVTPAVTAKPPAPDAS 222
Query: 401 MIDPVDLMPEPSGFVA------FHGTGNRLDGKRKKKDTVE-TGGT 439
SG F G G RLDGK+K +V + GT
Sbjct: 223 AFIGAGQKAGGSGGTGQNATSVFGGAGRRLDGKKKPSSSVSLSDGT 268
Score = 172 (65.6 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 41/107 (38%), Positives = 58/107 (54%)
Query: 28 DVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWC 87
++ GGKI++P SAL L + NI PMLFKLTN + R+TH GVLEF A EG+ LP W
Sbjct: 43 EINYGGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWM 102
Query: 88 FSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQK 134
G + D R +P + +L +++ + +TN K
Sbjct: 103 MQQL---GLDDGDTIRIESATLPKATFAKLKPMSLEF---LNITNPK 143
Score = 132 (51.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 26/46 (56%), Positives = 33/46 (71%)
Query: 100 DVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLE 145
++ GGKI++P SAL L + NI PMLFKLTN + R+TH GVLE
Sbjct: 43 EINYGGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLE 88
Score = 59 (25.8 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 417 FHGTGNRLDGKRKKKDTVE----TG-GTPTKREYQRGIP-------HYDYEPNTLVFLR 463
F G G RLDGK+K +V TG T +P + DY+P + FLR
Sbjct: 245 FGGAGRRLDGKKKPSSSVSLSDGTGVSTSNAAPVANDLPAIPPVVVNEDYKPGRVSFLR 303
Score = 38 (18.4 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 146 LDGKRKKKDTVE----TG-GTPTKREYQRGIP-------HYDYEPNTLVFLR 185
LDGK+K +V TG T +P + DY+P + FLR
Sbjct: 252 LDGKKKPSSSVSLSDGTGVSTSNAAPVANDLPAIPPVVVNEDYKPGRVSFLR 303
>UNIPROTKB|C9JNP9 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511 EMBL:AC000087
HOGENOM:HOG000212737 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI01011883
ProteinModelPortal:C9JNP9 SMR:C9JNP9 STRING:C9JNP9
Ensembl:ENST00000447868 ArrayExpress:C9JNP9 Bgee:C9JNP9
Uniprot:C9JNP9
Length = 159
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 102/157 (64%), Positives = 119/157 (75%)
Query: 288 MMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDM 347
MM+NLLL+EG LV +ESV+L VAT+SKFQPQ+ DFLDITNPKAVLEN LRNFACLT+GD+
Sbjct: 2 MMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDV 61
Query: 348 IAINYNSKIYELCVLETKPGNAVTIIECDMNVDFAPPVGYTEPEKVKEKEE--DNMIDPV 405
IAINYN KIYEL V+ETKP AV+IIECDMNVDF P+GY EPE+ + EE + D
Sbjct: 62 IAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERQVQHEESTEGEADHS 121
Query: 406 DLMPEPSGFVAFHGTGNRLDGKRKKKDTVETGGTPTK 442
E GF AF G+GNRLDGK+K VE +P K
Sbjct: 122 GYAGE-LGFRAFSGSGNRLDGKKKG---VEPSPSPIK 154
>GENEDB_PFALCIPARUM|PF14_0178 [details] [associations]
symbol:PF14_0178 "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004854 Pfam:PF03152
EMBL:AE014187 GO:GO:0006511 GenomeReviews:AE014187_GR KO:K14016
PANTHER:PTHR12555 RefSeq:XP_001348351.2 ProteinModelPortal:Q8ILR6
MINT:MINT-1732927 PRIDE:Q8ILR6 EnsemblProtists:PF14_0178:mRNA
GeneID:811759 KEGG:pfa:PF14_0178 EuPathDB:PlasmoDB:PF3D7_1418000
ProtClustDB:CLSZ2428901 Uniprot:Q8ILR6
Length = 282
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 99/225 (44%), Positives = 143/225 (63%)
Query: 203 FPDIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQ 262
F ++ PF Y C+ VS F G ++D+E G KII+P +AL L R +I +PMLF+++N
Sbjct: 15 FLNVSEPFQEEYTCYPVS-FIG--KDDMENGNKIILPQTALNALARRHISWPMLFEVSNP 71
Query: 263 KMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDF 322
+ THSGVLEF++DEG ++PYWMM+ L L EG++V + SVSLP TF K +P + DF
Sbjct: 72 YTDKRTHSGVLEFISDEGTCHMPYWMMQQLNLKEGDIVRVTSVSLPKGTFVKLKPCSKDF 131
Query: 323 LDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVTIIECDMNVDFA 382
++++N +AVLE LRN+A LT GD I I+Y K YE+ +++ KP A TIIE D+ V+F
Sbjct: 132 MELSNHRAVLETALRNYATLTIGDNIVIHYLGKTYEIKIVDLKPAFACTIIETDVEVEFE 191
Query: 383 PPVGYTEPEKVKEKEEDNMIDPVDLMPEPSGFVAFHGTGNRLDGK 427
P+ ++EP + +++PE F G G R DGK
Sbjct: 192 EPIDHSEPVQYV----------TEIVPEEEN--KFKGKGQRTDGK 224
Score = 217 (81.4 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 50/134 (37%), Positives = 76/134 (56%)
Query: 2 FPDIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQ 61
F ++ PF Y C+ VS F G ++D+E G KII+P +AL L R +I +PMLF+++N
Sbjct: 15 FLNVSEPFQEEYTCYPVS-FIG--KDDMENGNKIILPQTALNALARRHISWPMLFEVSNP 71
Query: 62 KMGRITHSGVLEFVADEGKVYLPYWCFSVSMFPGNERE-DVERGGKIIMPPSALEQLTRL 120
+ THSGVLEF++DEG ++PYW M N +E D+ R + +P +L
Sbjct: 72 YTDKRTHSGVLEFISDEGTCHMPYWM----MQQLNLKEGDIVRVTSVSLPKGTF---VKL 124
Query: 121 NICYPMLFKLTNQK 134
C +L+N +
Sbjct: 125 KPCSKDFMELSNHR 138
Score = 138 (53.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 30/61 (49%), Positives = 42/61 (68%)
Query: 85 YWCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVL 144
Y C+ VS F G ++D+E G KII+P +AL L R +I +PMLF+++N + THSGVL
Sbjct: 26 YTCYPVS-FIG--KDDMENGNKIILPQTALNALARRHISWPMLFEVSNPYTDKRTHSGVL 82
Query: 145 E 145
E
Sbjct: 83 E 83
>UNIPROTKB|Q8ILR6 [details] [associations]
symbol:UFD1 "Ubiquitin fusion degradation protein UFD1,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004854 Pfam:PF03152
EMBL:AE014187 GO:GO:0006511 GenomeReviews:AE014187_GR KO:K14016
PANTHER:PTHR12555 RefSeq:XP_001348351.2 ProteinModelPortal:Q8ILR6
MINT:MINT-1732927 PRIDE:Q8ILR6 EnsemblProtists:PF14_0178:mRNA
GeneID:811759 KEGG:pfa:PF14_0178 EuPathDB:PlasmoDB:PF3D7_1418000
ProtClustDB:CLSZ2428901 Uniprot:Q8ILR6
Length = 282
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 99/225 (44%), Positives = 143/225 (63%)
Query: 203 FPDIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQ 262
F ++ PF Y C+ VS F G ++D+E G KII+P +AL L R +I +PMLF+++N
Sbjct: 15 FLNVSEPFQEEYTCYPVS-FIG--KDDMENGNKIILPQTALNALARRHISWPMLFEVSNP 71
Query: 263 KMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDF 322
+ THSGVLEF++DEG ++PYWMM+ L L EG++V + SVSLP TF K +P + DF
Sbjct: 72 YTDKRTHSGVLEFISDEGTCHMPYWMMQQLNLKEGDIVRVTSVSLPKGTFVKLKPCSKDF 131
Query: 323 LDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVTIIECDMNVDFA 382
++++N +AVLE LRN+A LT GD I I+Y K YE+ +++ KP A TIIE D+ V+F
Sbjct: 132 MELSNHRAVLETALRNYATLTIGDNIVIHYLGKTYEIKIVDLKPAFACTIIETDVEVEFE 191
Query: 383 PPVGYTEPEKVKEKEEDNMIDPVDLMPEPSGFVAFHGTGNRLDGK 427
P+ ++EP + +++PE F G G R DGK
Sbjct: 192 EPIDHSEPVQYV----------TEIVPEEEN--KFKGKGQRTDGK 224
Score = 217 (81.4 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 50/134 (37%), Positives = 76/134 (56%)
Query: 2 FPDIPRPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQ 61
F ++ PF Y C+ VS F G ++D+E G KII+P +AL L R +I +PMLF+++N
Sbjct: 15 FLNVSEPFQEEYTCYPVS-FIG--KDDMENGNKIILPQTALNALARRHISWPMLFEVSNP 71
Query: 62 KMGRITHSGVLEFVADEGKVYLPYWCFSVSMFPGNERE-DVERGGKIIMPPSALEQLTRL 120
+ THSGVLEF++DEG ++PYW M N +E D+ R + +P +L
Sbjct: 72 YTDKRTHSGVLEFISDEGTCHMPYWM----MQQLNLKEGDIVRVTSVSLPKGTF---VKL 124
Query: 121 NICYPMLFKLTNQK 134
C +L+N +
Sbjct: 125 KPCSKDFMELSNHR 138
Score = 138 (53.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 30/61 (49%), Positives = 42/61 (68%)
Query: 85 YWCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVL 144
Y C+ VS F G ++D+E G KII+P +AL L R +I +PMLF+++N + THSGVL
Sbjct: 26 YTCYPVS-FIG--KDDMENGNKIILPQTALNALARRHISWPMLFEVSNPYTDKRTHSGVL 82
Query: 145 E 145
E
Sbjct: 83 E 83
>UNIPROTKB|C9J6N9 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005102 "receptor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737
GO:GO:0006511 EMBL:AC000087 HOGENOM:HOG000212737 PANTHER:PTHR12555
EMBL:AC000068 HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI01010945
ProteinModelPortal:C9J6N9 SMR:C9J6N9 STRING:C9J6N9
Ensembl:ENST00000494054 ArrayExpress:C9J6N9 Bgee:C9J6N9
Uniprot:C9J6N9
Length = 136
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 96/131 (73%), Positives = 110/131 (83%)
Query: 206 IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLT 260
IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLT
Sbjct: 6 IPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLT 65
Query: 261 NQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQPQTC 320
N+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VAT+SKFQPQ+
Sbjct: 66 NKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSP 125
Query: 321 DFLDITNPKAV 331
DFLDITNPKAV
Sbjct: 126 DFLDITNPKAV 136
Score = 305 (112.4 bits), Expect = 6.2e-27, P = 6.2e-27
Identities = 62/87 (71%), Positives = 70/87 (80%)
Query: 5 IPRPF-NR---SYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLT 59
IPR F NR Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLT
Sbjct: 6 IPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLT 65
Query: 60 NQKMGRITHSGVLEFVADEGKVYLPYW 86
N+ R+TH GVLEFVADEG YLP+W
Sbjct: 66 NKNSDRMTHCGVLEFVADEGICYLPHW 92
Score = 233 (87.1 bits), Expect = 7.1e-19, P = 7.1e-19
Identities = 46/62 (74%), Positives = 52/62 (83%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+TH GV
Sbjct: 18 YRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGV 77
Query: 144 LE 145
LE
Sbjct: 78 LE 79
>UNIPROTKB|C9J7C8 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005102 "receptor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737
GO:GO:0006511 EMBL:AC000087 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI00945833
ProteinModelPortal:C9J7C8 SMR:C9J7C8 STRING:C9J7C8
Ensembl:ENST00000474226 ArrayExpress:C9J7C8 Bgee:C9J7C8
Uniprot:C9J7C8
Length = 69
Score = 259 (96.2 bits), Expect = 9.6e-22, P = 9.6e-22
Identities = 50/69 (72%), Positives = 59/69 (85%)
Query: 255 MLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSK 314
MLFKLTN+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VAT+SK
Sbjct: 1 MLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSK 60
Query: 315 FQPQTCDFL 323
FQPQ+ DFL
Sbjct: 61 FQPQSPDFL 69
Score = 129 (50.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/33 (72%), Positives = 27/33 (81%)
Query: 54 MLFKLTNQKMGRITHSGVLEFVADEGKVYLPYW 86
MLFKLTN+ R+TH GVLEFVADEG YLP+W
Sbjct: 1 MLFKLTNKNSDRMTHCGVLEFVADEGICYLPHW 33
>TAIR|locus:2130120 [details] [associations]
symbol:AT4G15420 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR004854 InterPro:IPR015880 Pfam:PF03152 SMART:SM00355
EMBL:CP002687 GO:GO:0008270 GO:GO:0005622 GO:GO:0006511
InterPro:IPR007280 Pfam:PF04151 PANTHER:PTHR12555 EMBL:AF446353
EMBL:AY086035 EMBL:AY143927 EMBL:DQ778953 IPI:IPI00544100
RefSeq:NP_567465.1 UniGene:At.4344 UniGene:At.71880
ProteinModelPortal:Q8W1E7 SMR:Q8W1E7 STRING:Q8W1E7 PRIDE:Q8W1E7
EnsemblPlants:AT4G15420.1 GeneID:827213 KEGG:ath:AT4G15420
InParanoid:Q8W1E7 OMA:FHEPLQC ProtClustDB:PLN03086
Genevestigator:Q8W1E7 Uniprot:Q8W1E7
Length = 561
Score = 249 (92.7 bits), Expect = 2.7e-18, P = 2.7e-18
Identities = 62/192 (32%), Positives = 99/192 (51%)
Query: 233 GGKIIMPPSALEQLTRLNICY--PMLFKLT---NQKMGRITHSGVLEFVADEGKVYLPYW 287
G KI +PPS +L+ P+ F+L+ + + THSGVLEF A++G + LP
Sbjct: 91 GDKIKLPPSCFTELSDQGAFDKGPLYFELSVVDHADNKKTTHSGVLEFTAEDGTIGLPPH 150
Query: 288 MMRNLLLDEGE----LVNIESVSLPVATFSKFQPQTCDFLDITNPKAVLENCLRNFACLT 343
+ NL LV I + LP +++K QP F D+ N KA+LE LR A L+
Sbjct: 151 VWSNLFSTHDPMDVPLVEIRYIRLPKGSYAKLQPDNLGFSDLPNHKAILETILRQHATLS 210
Query: 344 SGDMIAINYNSKIYELCVLETKPGNAVTIIECDMNVDFAPPVGYTEPEKVKEKEEDNMID 403
D++ +NY Y+L VLE +P +++++E D+ VD P+ V ++ +++
Sbjct: 211 LDDVLLVNYGQVSYKLQVLELRPATSISVLETDIEVDIV------SPDIVSDQPNQHVLK 264
Query: 404 PVDLMPEPSGFV 415
P+ SG V
Sbjct: 265 PLQYGKSESGTV 276
>ASPGD|ASPL0000066677 [details] [associations]
symbol:AN10877 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR004854
Pfam:PF03152 EMBL:BN001304 GO:GO:0006511 PANTHER:PTHR12555
EnsemblFungi:CADANIAT00000493 OMA:GIREFSA Uniprot:C8VCB5
Length = 756
Score = 142 (55.0 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 41/152 (26%), Positives = 79/152 (51%)
Query: 253 YPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNL-LLDEG-----ELVNIESVS 306
+P+ F+L N + R+ ++G+ EF A E ++ L + L + EG +V + +
Sbjct: 89 HPLTFRLVNTQNSRVIYAGIREFSARENEIGLSASLREALDISQEGGDADAPIVTVHAEQ 148
Query: 307 LPVATFSKFQPQTCDFLDITNPKAVLENCLR-NFACLTSGDMIAI-NYNSKIYELCVLET 364
LP T+ + +P + D + KA+LE LR N+ LT+G+ + + + ++ V +
Sbjct: 149 LPKGTYVRLRPLEAGY-DTDDWKALLERHLRSNYTTLTTGETLTVPRGQEESFKFLVDKV 207
Query: 365 KP-GNAVTIIECDMNVDFAPPVGYTEPEKVKE 395
+P G + +++ D+ VD V TE E+ +E
Sbjct: 208 EPQGEGICVVDTDLEVDI---VALTE-EQARE 235
Score = 51 (23.0 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 86 WCFSVSMFPGNEREDVERGGKIIMPPSALEQL 117
W ++ P + + G +II+P SALEQL
Sbjct: 10 WSSQFTVTPPQYTQKLS-GDRIILPQSALEQL 40
Score = 49 (22.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 32 GGKIIMPPSALEQL 45
G +II+P SALEQL
Sbjct: 27 GDRIILPQSALEQL 40
Score = 49 (22.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 233 GGKIIMPPSALEQL 246
G +II+P SALEQL
Sbjct: 27 GDRIILPQSALEQL 40
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.139 0.424 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 473 473 0.00099 118 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 603 (64 KB)
Total size of DFA: 270 KB (2138 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.69u 0.16s 39.85t Elapsed: 00:00:03
Total cpu time: 39.70u 0.16s 39.86t Elapsed: 00:00:03
Start: Thu Aug 15 11:21:04 2013 End: Thu Aug 15 11:21:07 2013