RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1724
(473 letters)
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1,
double-PSI-beta-barrel, protein turnover; NMR
{Saccharomyces cerevisiae}
Length = 208
Score = 262 bits (671), Expect = 3e-86
Identities = 99/199 (49%), Positives = 137/199 (68%), Gaps = 4/199 (2%)
Query: 198 FGFNMFPDIPRPFNRSYKCFSVSMFPGNE-REDVERGGKIIMPPSALEQLTRLNICYPML 256
G N F ++P+ F ++C+ ++M ++D GGKI +PPSAL +L+ LNI YPML
Sbjct: 9 GGGNGFVNMPQTFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPML 68
Query: 257 FKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSKFQ 316
FKLT + GR+TH GVLEF+A+EG+VYLP WMM L + G L+ I S +P+ F K +
Sbjct: 69 FKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLE 128
Query: 317 PQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKP---GNAVTII 373
PQ+ DFLDI++PKAVLEN LRNF+ LT D+I I+YN K +++ +LE KP ++ +I
Sbjct: 129 PQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVI 188
Query: 374 ECDMNVDFAPPVGYTEPEK 392
E D+ DFAPPVGY EP+
Sbjct: 189 ETDLVTDFAPPVGYVEPDY 207
Score = 119 bits (299), Expect = 2e-31
Identities = 44/87 (50%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Query: 1 MFPDIPRPFNRSYKCFSVSMFPGNE-REDVERGGKIIMPPSALEQLTRLNICYPMLFKLT 59
F ++P+ F ++C+ ++M ++D GGKI +PPSAL +L+ LNI YPMLFKLT
Sbjct: 13 GFVNMPQTFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLT 72
Query: 60 NQKMGRITHSGVLEFVADEGKVYLPYW 86
+ GR+TH GVLEF+A+EG+VYLP W
Sbjct: 73 ANETGRVTHGGVLEFIAEEGRVYLPQW 99
Score = 84.7 bits (209), Expect = 4e-19
Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 85 YWCFSVSMFPGNE-REDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
+ C+ ++M ++D GGKI +PPSAL +L+ LNI YPMLFKLT + GR+TH GV
Sbjct: 25 FRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGV 84
Query: 144 LE 145
LE
Sbjct: 85 LE 86
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent
proteolytic, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 190
Score = 254 bits (649), Expect = 3e-83
Identities = 132/188 (70%), Positives = 152/188 (80%), Gaps = 1/188 (0%)
Query: 196 FQFGFNMFPDIPRPFNRSYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYP 254
+ F+ Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YP
Sbjct: 2 SSGSSGIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYP 61
Query: 255 MLFKLTNQKMGRITHSGVLEFVADEGKVYLPYWMMRNLLLDEGELVNIESVSLPVATFSK 314
MLFKLTN+ R+TH GVLEFVADEG YLP+WMM+NLLL+EG LV +ESV+L VAT+SK
Sbjct: 62 MLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSK 121
Query: 315 FQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVTIIE 374
FQPQ+ DFLDITNPKAVLEN LRNFACLT+GD+IAINYN KIYEL V+ETKP AV+IIE
Sbjct: 122 FQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIE 181
Query: 375 CDMNVDFA 382
CDMNVDF
Sbjct: 182 CDMNVDFD 189
Score = 115 bits (290), Expect = 2e-30
Identities = 57/87 (65%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 1 MFPDIPRPFNRSYKCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLT 59
+ F+ Y+CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLT
Sbjct: 8 IPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLT 67
Query: 60 NQKMGRITHSGVLEFVADEGKVYLPYW 86
N+ R+TH GVLEFVADEG YLP+W
Sbjct: 68 NKNSDRMTHCGVLEFVADEGICYLPHW 94
Score = 85.7 bits (212), Expect = 1e-19
Identities = 46/62 (74%), Positives = 52/62 (83%), Gaps = 1/62 (1%)
Query: 85 YWCFSVSMFPG-NEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGV 143
Y CFSVSM G N+R DVE+GGKIIMPPSAL+QL+RLNI YPMLFKLTN+ R+TH GV
Sbjct: 20 YRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGV 79
Query: 144 LE 145
LE
Sbjct: 80 LE 81
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 7e-08
Identities = 80/529 (15%), Positives = 150/529 (28%), Gaps = 159/529 (30%)
Query: 10 NRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRIT-H 68
+R Y +F + +V R L+ +L L +L + +
Sbjct: 117 DRLYN--DNQVFA---KYNVSR----------LQPYLKLRQA---LLEL--RPAKNVLID 156
Query: 69 ----SG----VLEFVADEG-KVYLP---YWCFSVSMFPGNEREDVERGGKIIMPPSALEQ 116
SG L+ + + +W +++ N P + LE
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFW---LNL--KNCNS----------PETVLEM 201
Query: 117 LTRLNICYPMLFKLTNQKMGRITHSGVLELDGKRKKKDTVETGGTPTKREYQRGIPHYDY 176
L +L Y +I + D K + + + E +R + Y
Sbjct: 202 LQKL--LY------------QIDPNWTSRSDHSSNIKLRIHS----IQAELRRLLKSKPY 243
Query: 177 EPNTLVFLRNIKPASAHKEFQFG--------FNMFPDIPRPFNRSYKCFSVSMFPGNERE 228
N L+ L N++ A A F F D ++ E
Sbjct: 244 -ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 229 DVERGGKII-MPPSAL-EQLTRLNICYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPY 286
K + P L ++ N P + + E + D G
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTN---PRRLSI------------IAESIRD-GLATWDN 346
Query: 287 WMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCD---FLDITN-PKAVL--------EN 334
W +++ D +L I SL V ++++ F + P +L ++
Sbjct: 347 W--KHVNCD--KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 335 CLRNFAC-LTSGDMIAINYNSKIYEL----CVLETKPGNAVT----IIEC-------DMN 378
+ L ++ + L+ K N I++ D +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 379 VDFAPP---------VGYTEPEKVKEKEEDNMIDPVDLMPEPSGFVAFHGTGNRLDGKRK 429
D PP +G+ +K E + + L F+ F L+ K +
Sbjct: 463 -DLIPPYLDQYFYSHIGH----HLKNIE---HPERMTLFRMV--FLDF----RFLEQKIR 508
Query: 430 KKDTVETGGTPTK------REYQRGI----PHYDYEPNTLV-FLRNIKP 467
T + Y+ I P Y+ N ++ FL I+
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Score = 44.5 bits (104), Expect = 7e-05
Identities = 51/328 (15%), Positives = 95/328 (28%), Gaps = 113/328 (34%)
Query: 173 HYDYEPNTLVFLRNIKPASAHKEFQFGFN-MFPDIPRPFNRSYKCFSVSMFPGN--ERED 229
H D+E E Q+ + + F ++ C V P + +E+
Sbjct: 6 HMDFETG---------------EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE 50
Query: 230 VERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLEFVADEGKVYLPY-WM 288
++ IIM A+ RL L+ Q+ V +FV E + + Y ++
Sbjct: 51 ID---HIIMSKDAVSGTLRLFWTL-----LSKQE------EMVQKFV--EEVLRINYKFL 94
Query: 289 MRNLLLDEGELVNIESV--SLPVATFSKFQ------PQTCDFLDITNPKAV--LENCLRN 338
M + E S+ + + + Q +++ + L L
Sbjct: 95 M--------SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 339 FACLTSGDMIAINYNSKIY------------ELC----VLETKPGNA--VTIIECDMNVD 380
L + I ++C V + + C+
Sbjct: 147 ---LRPAKNVL------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN---- 193
Query: 381 FAPPVGYTEPEKVKEKEED--NMIDPVDLMPEPSGFVAFHGTGNRLDGKRKKKDTVETGG 438
PE V E + IDP +R D K + +
Sbjct: 194 --------SPETVLEMLQKLLYQIDPNWT--------------SRSDHSSNIKLRIHS-- 229
Query: 439 TPTKREYQRGIPHYDYEPNTLVFLRNIK 466
+ E +R + Y N L+ L N++
Sbjct: 230 --IQAELRRLLKSKPY-ENCLLVLLNVQ 254
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix,
transport protein ATPase ubiquitin ubiquitin,
phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A
3qc8_A
Length = 187
Score = 50.8 bits (121), Expect = 1e-07
Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 277 ADEGKVYLPYWMMRNLLLDEGELVNIESVS-LPVATFSKFQPQTCDFLDITNP--KAVLE 333
+ K+ + + NL + G++++I+ + P IT + L+
Sbjct: 77 CSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLK 136
Query: 334 NCLR-NFACLTSGDMIAINYNSKIYELCVLETKPGNAV-----TIIECD 376
+ + GD+ + + E V+ET P T+I C+
Sbjct: 137 PYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCE 185
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding,
transport protein; HET: MLY; 2.00A {Homo sapiens} PDB:
2pjh_B
Length = 211
Score = 35.0 bits (80), Expect = 0.027
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 277 ADEGKVYLPYWMMRNLLLDEGELVNIESVS-LPVATFSKFQPQTCDFLDITNP--KAVLE 333
+ K+ + + NL + G++++I+ + P IT + L+
Sbjct: 80 CSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLK 139
Query: 334 NCLRNFAC-LTSGDMIAINYNSKIYELCVLETKPGNAV-----TIIECDMNVDFAPPVGY 387
+ GD+ + + E V+ET P T+I C
Sbjct: 140 PYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPSPYCIVAPDTVIHC------------ 187
Query: 388 TEPEKVKEKEEDNMIDPV 405
E E +K ++E+ ++ V
Sbjct: 188 -EGEPIKREDEEESLNEV 204
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.054
Identities = 36/198 (18%), Positives = 58/198 (29%), Gaps = 78/198 (39%)
Query: 9 FNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQL-TRL-NICYPMLFKLTNQKMGRI 66
N K VS G PP +L L L P +Q RI
Sbjct: 371 VN-GAKNLVVS-------------G----PPQSLYGLNLTLRKAKAPS---GLDQS--RI 407
Query: 67 THS-----GVLEFVADEGKVYLPYWCFSVSMFPGNER--EDVERGG--------KI---- 107
S F+ V P+ S + P ++ +D+ + +I
Sbjct: 408 PFSERKLKFSNRFLP----VASPF--HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 108 --------IMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSGVLELDGKRKKKDTVETG 159
++ S E++ I P+ ++ T Q + TH +L+ G
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF--KATH--ILDFG----------PG 507
Query: 160 GTP-----TKREYQ-RGI 171
G T R G+
Sbjct: 508 GASGLGVLTHRNKDGTGV 525
Score = 33.1 bits (75), Expect = 0.25
Identities = 31/186 (16%), Positives = 47/186 (25%), Gaps = 68/186 (36%)
Query: 287 WMMRNLLLDEGELVNIESVSLPVAT------------FSKFQPQTCD------------- 321
+ R L L G ++E L V T F+K P+ +
Sbjct: 4 YSTRPLTLSHG---SLE-HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 322 ----FL----------DITNPKAVLENCLRNF--ACLTSGD--MIAINYNSKIYELCVLE 363
FL + VL CL F L D +A + +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN------D 113
Query: 364 TKPGNAVTIIECDMNVDFAPPVGYTEPEKVKEKEEDNMIDPVDLMPEPSG----FVAFHG 419
T +I+ Y + ++ D + G F G
Sbjct: 114 TTLVKTKELIKN-----------YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 420 TGNRLD 425
GN D
Sbjct: 163 QGNTDD 168
Score = 33.1 bits (75), Expect = 0.26
Identities = 46/253 (18%), Positives = 67/253 (26%), Gaps = 93/253 (36%)
Query: 153 KDTVETG-GTPTKREYQ---RGIPHYDYEPNTLVFLRNIK-PASAHKEFQFGFNMFPDIP 207
+D++E G P+ + + V N PA E I
Sbjct: 325 EDSLENNEGVPS---PMLSISNLTQEQVQ--DYVNKTNSHLPAGKQVE----------IS 369
Query: 208 RPFNRSYKCFSVSMFPGNEREDVERGGKIIMPPSALEQL-TRL-NICYPMLFKLTNQKMG 265
N K VS G PP +L L L P +Q
Sbjct: 370 L-VN-GAKNLVVS-------------G----PPQSLYGLNLTLRKAKAPS---GLDQS-- 405
Query: 266 RITHS-----GVLEFVADEGKVYLPY---WM---MRNLLLD-EGELVNIESVSL--PVAT 311
RI S F+ V P+ + + D V+ + + PV
Sbjct: 406 RIPFSERKLKFSNRFLP----VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV-- 459
Query: 312 FSKFQPQTCDFLDITNPKAVLENCLRNFACLTSGDMIAINYNSKIYELCVL-ETKPGNAV 370
+ T D D+ + + + D I L V ET
Sbjct: 460 YD-----TFDGSDL---RVLSGSISERIV-----DCII--------RLPVKWETTTQFKA 498
Query: 371 TIIECDMNVDFAP 383
T I +DF P
Sbjct: 499 THI-----LDFGP 506
Score = 29.2 bits (65), Expect = 3.8
Identities = 25/118 (21%), Positives = 37/118 (31%), Gaps = 39/118 (33%)
Query: 323 LDI--TNPK--AVLENCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAV--TIIECD 376
LDI NP + + G I NY++ I+E V + I E
Sbjct: 1662 LDIVINNPVNLTIHFGGEK-------GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 377 MNVDFAPPVG------YTEP----------EKVKEKEEDNMIDPVDLMPEPSGFVAFH 418
+ F G +T+P E +K K L+P + A H
Sbjct: 1715 TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK---------GLIPADA-TFAGH 1762
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 35.2 bits (81), Expect = 0.055
Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Query: 278 DEGKVYLPYWMMRNLLLDEGELVNIESV-SLPVATFSKFQP--QTCDFLDITNPKAVLEN 334
+ K+ + + NL + G++++I+ + P T + + + L+
Sbjct: 78 SDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKP 137
Query: 335 CLRNFA-CLTSGDMIAINYNSKIYELCVLETKPGNAVTI 372
+ GD+ + + E V+ET P +
Sbjct: 138 YFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIV 176
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 34.0 bits (78), Expect = 0.10
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Query: 278 DEGKVYLPYWMMRNLLLDEGELVNIESVS-LPVATFSKFQPQTCDFLDITNP---KAVLE 333
+ K+ + + NL + G++++I+ + P IT +
Sbjct: 78 SDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKP 137
Query: 334 NCLRNFACLTSGDMIAINYNSKIYELCVLETKPGNAVTI 372
L + + GD+ ++ + E V+ET P +
Sbjct: 138 YFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYCIV 176
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 28.1 bits (63), Expect = 6.2
Identities = 26/173 (15%), Positives = 44/173 (25%), Gaps = 35/173 (20%)
Query: 8 PFNRSYKCFSVSMF-----------------PGNEREDVERGGKIIMPPSALEQLT---- 46
P N S K S+ F G + + + RG + + L+ +
Sbjct: 236 PINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIVA 295
Query: 47 RLNICYPMLFKLTNQKMGRITHS-----GVLEFVADEGKVYLPYWCFSVSMFPGNEREDV 101
++ I + LT + + V + GNE
Sbjct: 296 KIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXA 355
Query: 102 ERGGKIIMPPSALEQLTRLNICYPMLFKLTNQKMGRITHSG-VLELDGKRKKK 153
+ E R+ I L T RI G + E +
Sbjct: 356 FE----LEEKVLAEVGDRVLITRLDLPPTT----LRIXGHGLIEEFKPIKDLN 400
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 27.9 bits (63), Expect = 6.8
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 9/47 (19%)
Query: 287 WMMRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPKAVLE 333
+ LL + E++ ++ + Q LD+T+ + +
Sbjct: 14 IELSRLLSERHEVI---------KVYNSSEIQGGYKLDLTDFPRLED 51
>4dkc_A Interleukin-34, IL-34; dimeric four-helix bundle cytokine,
activating CSF-1R, CSF-1 receptor, glycosylation,
cytokine; HET: NAG BMA; 1.85A {Homo sapiens} PDB:
4dke_A* 4dkf_A* 4dkd_A* 4exp_A* 4exn_A*
Length = 190
Score = 27.4 bits (60), Expect = 8.0
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 289 MRNLLLDEGELVNIESVSLPVATFSKFQPQTCDFLDITNPKAVLENCLRNFACL 342
+ LLL+ + + VS V + L + PKA+L+NC R L
Sbjct: 105 VETLLLNVQQGLTDVEVSPKVESVLSLLNAPGPNLKLVRPKALLDNCFRVMELL 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.424
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,377,887
Number of extensions: 449587
Number of successful extensions: 716
Number of sequences better than 10.0: 1
Number of HSP's gapped: 703
Number of HSP's successfully gapped: 22
Length of query: 473
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 376
Effective length of database: 3,993,456
Effective search space: 1501539456
Effective search space used: 1501539456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.1 bits)