RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1724
         (473 letters)



>d1ohfa_ b.121.4.8 (A:) Tetraomegavirus capsid protein {Nudaurelia
           capensis omega virus [TaxId: 12541]}
          Length = 539

 Score = 28.0 bits (62), Expect = 2.7
 Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 3/37 (8%)

Query: 290 RNLLLDEGELVNIESVSLPVATFSKF---QPQTCDFL 323
           RNL  +     N   V LP  TF +     P+    L
Sbjct: 349 RNLDAETTAASNRSEVPLPPLTFGQTAPNNPKIEQTL 385


>d1bqba_ d.92.1.2 (A:) Aureolysin {Staphylococcus aureus [TaxId:
           1280]}
          Length = 301

 Score = 27.3 bits (60), Expect = 4.6
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 419 GTGNRLDGKRKKKDTVETGGTPTKREYQRG--IPHYDYEPNT 458
           GTG  + G  K  +     G  +  +      +  Y++   T
Sbjct: 5   GTGKGVLGDTKDININSIDGGFSLEDLTHQGKLSAYNFNDQT 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,837,870
Number of extensions: 89851
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 4
Length of query: 473
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 384
Effective length of database: 1,185,626
Effective search space: 455280384
Effective search space used: 455280384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)