BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17241
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2APJ|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
           At4g34215 At 1.6 Angstrom Resolution
 pdb|2APJ|B Chain B, X-Ray Structure Of Protein From Arabidopsis Thaliana
           At4g34215 At 1.6 Angstrom Resolution
 pdb|2APJ|C Chain C, X-Ray Structure Of Protein From Arabidopsis Thaliana
           At4g34215 At 1.6 Angstrom Resolution
 pdb|2APJ|D Chain D, X-Ray Structure Of Protein From Arabidopsis Thaliana
           At4g34215 At 1.6 Angstrom Resolution
          Length = 260

 Score = 31.6 bits (70), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 13/74 (17%)

Query: 3   IATGANMIFDKLKQEQPGFLSKVTIICGDCSKKKLGISDENLKLLQTNVNVIFHTAAIVN 62
           IA+G   I DK+++ Q G L    ++C D   K L +  +NL L          T A V 
Sbjct: 200 IASGGGYI-DKVREAQLG-LKLSNVVCVDA--KGLPLKSDNLHLT---------TEAQVQ 246

Query: 63  FEASLAQAVLSNVC 76
              SLAQA LSN C
Sbjct: 247 LGLSLAQAYLSNFC 260


>pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar
           Epimerase From Agrobacterium Tumefaciens
          Length = 342

 Score = 30.4 bits (67), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 10  IFDKLKQEQP-GFLSKVTIICGDCSKKKLGISDENLKLLQTNVNVIFHTAAIVNFEASL 67
           + D  + E P GF   V     D     L    E  KL++   +VIFH AAIV+ EA L
Sbjct: 50  LIDVFQPEAPAGFSGAV-----DARAADLSAPGEAEKLVEARPDVIFHLAAIVSGEAEL 103


>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
           Peptide Synthetase From Mycobacterium Tuberculosis
          Length = 478

 Score = 27.7 bits (60), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 24  KVTIICGDCSKKKLGISDENLKLLQTNVNVIFHTAAIVNFEASLAQAVLSNVCATKEFLE 83
           ++ ++ GD S+  LG+     + L   V++I  +AA VN      +    NV  T E + 
Sbjct: 141 RLEVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXVN-AFPYHELFGPNVAGTAELIR 199

Query: 84  LATS 87
           +A +
Sbjct: 200 IALT 203


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,222,678
Number of Sequences: 62578
Number of extensions: 64505
Number of successful extensions: 127
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 4
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)